BLASTX nr result
ID: Rehmannia30_contig00031411
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00031411
(719 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012845534.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 216 8e-61
ref|XP_011078257.1| probable RNA-dependent RNA polymerase 5 [Ses... 200 2e-55
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza] 145 4e-36
ref|XP_012833672.1| PREDICTED: probable RNA-dependent RNA polyme... 124 7e-29
ref|XP_011093632.1| probable RNA-dependent RNA polymerase 5 isof... 112 1e-24
gb|PIN13666.1| RNA-directed RNA polymerase QDE-1 [Handroanthus i... 100 2e-20
ref|XP_016449580.1| PREDICTED: probable RNA-dependent RNA polyme... 75 7e-12
ref|XP_009760370.1| PREDICTED: probable RNA-dependent RNA polyme... 75 7e-12
ref|XP_019191939.1| PREDICTED: probable RNA-dependent RNA polyme... 74 2e-11
ref|XP_019239863.1| PREDICTED: probable RNA-dependent RNA polyme... 73 4e-11
ref|XP_017241746.1| PREDICTED: probable RNA-dependent RNA polyme... 73 5e-11
ref|XP_017241744.1| PREDICTED: probable RNA-dependent RNA polyme... 73 5e-11
ref|XP_009760371.1| PREDICTED: probable RNA-dependent RNA polyme... 72 1e-10
ref|XP_009603361.1| PREDICTED: probable RNA-dependent RNA polyme... 69 2e-09
ref|XP_015163793.1| PREDICTED: probable RNA-dependent RNA polyme... 68 3e-09
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 68 3e-09
gb|KJB07221.1| hypothetical protein B456_001G008800 [Gossypium r... 67 4e-09
ref|XP_016474250.1| PREDICTED: probable RNA-dependent RNA polyme... 67 4e-09
ref|XP_009603362.1| PREDICTED: probable RNA-dependent RNA polyme... 67 4e-09
ref|XP_012472313.1| PREDICTED: probable RNA-dependent RNA polyme... 67 4e-09
>ref|XP_012845534.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA
polymerase 5 [Erythranthe guttata]
Length = 1040
Score = 216 bits (549), Expect = 8e-61
Identities = 118/201 (58%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Frame = -2
Query: 601 ASPH-QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI 425
+SP+ Q++RLP+ VE TIQ IC+EK QP +KNYAR+MLAEIGEQAS+EVLT IL SN PI
Sbjct: 5 SSPYNQDIRLPKKVEMTIQTICLEKNQPPLKNYARKMLAEIGEQASMEVLTEILSSNQPI 64
Query: 424 RSFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQS 245
+SFSGFV+ +VKK+YP+ AA VLA Y+S +SPQ+Q++WSPSST SPHT NGENL+S
Sbjct: 65 KSFSGFVSFMVKKDYPVQAAAVLAAYDS--SSPQSQKMWSPSST----SPHTRNGENLES 118
Query: 244 PLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRE 65
PL + S +SNL T PQ++ C+LSFEDET QE +SP+ P E
Sbjct: 119 PLSRLSMNSITSNLHSTSPQSVGCRLSFEDET--------QENRSPNCGTSQPSV---PE 167
Query: 64 TTEPMTISQQLMILNKLEYRK 2
EP+TI+QQL+ LNKLEYRK
Sbjct: 168 VKEPITITQQLITLNKLEYRK 188
>ref|XP_011078257.1| probable RNA-dependent RNA polymerase 5 [Sesamum indicum]
Length = 1036
Score = 200 bits (509), Expect = 2e-55
Identities = 116/200 (58%), Positives = 138/200 (69%)
Frame = -2
Query: 601 ASPHQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR 422
+SP QEVRLP+ VE IQRIC+EK QP +K YAR MLAEIGEQA+LEVLTT+L S T IR
Sbjct: 4 SSPDQEVRLPEPVEMIIQRICLEKNQPPLKKYARNMLAEIGEQAALEVLTTVLSSKT-IR 62
Query: 421 SFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSP 242
SF G+VA LVKK++P AA VL+ Y SP STSP SPHT E L+SP
Sbjct: 63 SFGGYVAFLVKKDFPNQAAAVLSAYGSPH----------QCSTSPNKSPHTPYYERLRSP 112
Query: 241 LLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRET 62
+ SF V+S SNL++TGPQNI C LSFE+ET EK P R QSPL E RE
Sbjct: 113 VSSFSVDSIPSNLNKTGPQNIRCNLSFENET--------LEKSCPGARCQSPLPDELREM 164
Query: 61 TEPMTISQQLMILNKLEYRK 2
T+ +TISQQLMIL++L++RK
Sbjct: 165 TDSVTISQQLMILSQLQFRK 184
>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
Length = 898
Score = 145 bits (366), Expect = 4e-36
Identities = 98/205 (47%), Positives = 121/205 (59%), Gaps = 2/205 (0%)
Frame = -2
Query: 610 KMGASPHQEVRLPQSVEATIQRICVEKKQPAIKNYA--REMLAEIGEQASLEVLTTILFS 437
KM S H++VRLP+SVEA I+RI VEK+QP + + R+ML EIGEQ SL++L I S
Sbjct: 7 KMDGSSHEDVRLPESVEAAIERIAVEKQQPPLPRNSDVRKMLREIGEQPSLKLLNIIHSS 66
Query: 436 NTPIRSFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGE 257
TPI+SF GFV+ LV+ YP AA + + Y+SP P T I+SPSS SP ++ NGE
Sbjct: 67 KTPIKSFGGFVSKLVRTYYPNQAAAIPSPYKSP---PPT--IYSPSSISPNVA---RNGE 118
Query: 256 NLQSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAG 77
+LQS L SNL TG QNISCQLSFEDE E R+
Sbjct: 119 SLQSSL---------SNLQGTGFQNISCQLSFEDEALESRN------------------- 150
Query: 76 ERRETTEPMTISQQLMILNKLEYRK 2
E M IS QL+ LNKLE+RK
Sbjct: 151 ------ESMAISPQLLTLNKLEFRK 169
>ref|XP_012833672.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Erythranthe
guttata]
Length = 953
Score = 124 bits (312), Expect = 7e-29
Identities = 91/203 (44%), Positives = 114/203 (56%), Gaps = 3/203 (1%)
Frame = -2
Query: 601 ASPHQE---VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNT 431
ASP + VRLP++VE I+RI EK QP + AR+ML +IGEQ+SL +L+TIL SN
Sbjct: 7 ASPSRNEEIVRLPEAVERCIKRIRDEKNQPPLAKSARKMLQQIGEQSSLRILSTILSSNK 66
Query: 430 PIRSFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENL 251
PI SF+GFV+ LV K+ P +L + SP R+ SP STS SPH
Sbjct: 67 PIYSFTGFVSHLVNKDNP----NLLTTHTSP-------RLSSPPSTS--TSPH------- 106
Query: 250 QSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGER 71
+PL ++I QLSFEDET QEK SP VR Q L G+
Sbjct: 107 -APLRL---------------KSIRSQLSFEDET--------QEKTSPCVRSQLSLTGQH 142
Query: 70 RETTEPMTISQQLMILNKLEYRK 2
RE TISQQLM+L+KLEYR+
Sbjct: 143 REIEHSATISQQLMVLSKLEYRQ 165
>ref|XP_011093632.1| probable RNA-dependent RNA polymerase 5 isoform X1 [Sesamum
indicum]
Length = 1013
Score = 112 bits (281), Expect = 1e-24
Identities = 81/203 (39%), Positives = 110/203 (54%), Gaps = 1/203 (0%)
Frame = -2
Query: 607 MGASPHQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTP 428
M SPHQE LP S+E TIQ+IC ++ QP I +YAR++LA+IGE+A+ ++L I SN
Sbjct: 1 MDGSPHQEAPLPHSIEKTIQKICKDQSQPPISSYARKLLADIGEKAASDLLARI--SNQR 58
Query: 427 I-RSFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENL 251
I +SFSG++ LVKK +P V S ++R SPSS+SP N
Sbjct: 59 ITKSFSGYIITLVKKYHPAVV-----------PSSPSKRSLSPSSSSP------RNTSLK 101
Query: 250 QSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGER 71
+SPL I LSFED+ E R + + + S +V ++ E
Sbjct: 102 KSPL------------------QIGRLLSFEDDVQETRGPIFEHQTSTAVELKN---SEL 140
Query: 70 RETTEPMTISQQLMILNKLEYRK 2
R T+ TISQQL IL+KLEYRK
Sbjct: 141 RGMTKSNTISQQLRILSKLEYRK 163
>gb|PIN13666.1| RNA-directed RNA polymerase QDE-1 [Handroanthus impetiginosus]
Length = 1014
Score = 100 bits (249), Expect = 2e-20
Identities = 80/204 (39%), Positives = 105/204 (51%), Gaps = 2/204 (0%)
Frame = -2
Query: 607 MGASPHQEVR--LPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSN 434
M ASP +E + LPQSVE I IC ++ QP + N R +LAEIGE+A+LE+L I N
Sbjct: 1 MEASPRKEAQCPLPQSVEKIIVDICNDQSQPLLPNAVRRLLAEIGEKAALELLLRIKGQN 60
Query: 433 TPIRSFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGEN 254
+SFSG+V L+KK +P + + SP SP +R SPS +SP SP
Sbjct: 61 I-TKSFSGYVITLLKKYHPSL-------FPSPSNSP-NKRPLSPSCSSPNSSP------- 104
Query: 253 LQSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGE 74
L ++ PQ IS S DE + K P+V +S GE
Sbjct: 105 ----------------LKKSPPQ-ISRMQSLRDEA--------LDWKGPNVAPESSSTGE 139
Query: 73 RRETTEPMTISQQLMILNKLEYRK 2
+E T TIS+QL IL+KLEYRK
Sbjct: 140 LKEMTNRATISEQLKILSKLEYRK 163
>ref|XP_016449580.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Nicotiana
tabacum]
Length = 1060
Score = 75.5 bits (184), Expect = 7e-12
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Frame = -2
Query: 583 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSGFV 404
++LP SVE + +IC ++Q I R +L IGE+ SL++L+ I ++ SGF+
Sbjct: 17 IKLPPSVEQMLNQICKNQRQNPIDEKVRRLLLSIGEEGSLDILSKISVCQIK-KTLSGFI 75
Query: 403 ACLVKKEY-----PIVAATVLADYESPQASPQTQRI--WSPSSTSPYISPHTLNGENLQS 245
+ KK Y T ++ ES SPQ QRI SP+S+S ++ NG Q+
Sbjct: 76 VFMAKKYYQSETQQFYQQTPVSSAESFFQSPQIQRISLSSPNSSSSSVNFSPRNGPLFQA 135
Query: 244 PLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQS--PLAGER 71
+ + + S+ + PQ +S S PE+ ++ RR S P+ E
Sbjct: 136 TVHNNDIVGDGSDSPTSAPQMLSPPTS-----PERTNF----------RRDSHDPMPSEY 180
Query: 70 RETTEPMTISQQLMILNKLEYRK 2
R IS+QL+ L+ LE+RK
Sbjct: 181 RNRAGIQGISKQLLALSNLEFRK 203
>ref|XP_009760370.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
[Nicotiana sylvestris]
Length = 1060
Score = 75.5 bits (184), Expect = 7e-12
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Frame = -2
Query: 583 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSGFV 404
++LP SVE + +IC ++Q I R +L IGE+ SL++L+ I ++ SGF+
Sbjct: 17 IKLPPSVEQMLNQICKNQRQNPIDEKVRRLLLSIGEEGSLDILSKISVCQIK-KTLSGFI 75
Query: 403 ACLVKKEY-----PIVAATVLADYESPQASPQTQRI--WSPSSTSPYISPHTLNGENLQS 245
+ KK Y T ++ ES SPQ QRI SP+S+S ++ NG Q+
Sbjct: 76 VFMAKKYYQSETQQFYQQTPVSSAESFFQSPQIQRISLSSPNSSSSSVNFSPRNGPLFQA 135
Query: 244 PLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQS--PLAGER 71
+ + + S+ + PQ +S S PE+ ++ RR S P+ E
Sbjct: 136 TVHNNDIVGDGSDSPTSAPQMLSPPTS-----PERTNF----------RRDSHDPMPSEY 180
Query: 70 RETTEPMTISQQLMILNKLEYRK 2
R IS+QL+ L+ LE+RK
Sbjct: 181 RNRAGIQGISKQLLALSNLEFRK 203
>ref|XP_019191939.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Ipomoea nil]
Length = 1062
Score = 74.3 bits (181), Expect = 2e-11
Identities = 67/198 (33%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
Frame = -2
Query: 589 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR-SFS 413
+EV L SVEA +Q IC++++Q AR+ LA IGEQASL+VL I S PIR + S
Sbjct: 49 EEVFLAPSVEAKLQEICIKQRQERADTNARKCLASIGEQASLDVLEKI--SPCPIRTTLS 106
Query: 412 GFVACLVKKEYPIVAATVLADYESPQA-SPQTQRIWSPSSTSPYISPHTLNGENLQSPLL 236
F+ +VKK YP + SP + S QR +S S+S S T
Sbjct: 107 RFIVYMVKKYYP-------QQHSSPGSFSHSPQRYFSSPSSSCSSSNFTPRN-------- 151
Query: 235 SFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETTE 56
V SP SN G + ++S D ++ + SP P E E
Sbjct: 152 ---VPSPKSN---AGDETFESKMSKPD--------ILSPQSSPQSFSHHPRRLEFEERAN 197
Query: 55 PMTISQQLMILNKLEYRK 2
+ +S QL L++LE+RK
Sbjct: 198 ALGVSYQLSALSELEFRK 215
>ref|XP_019239863.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Nicotiana
attenuata]
gb|OIT20680.1| putative rna-dependent rna polymerase 5 [Nicotiana attenuata]
Length = 1063
Score = 73.2 bits (178), Expect = 4e-11
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%)
Frame = -2
Query: 589 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSG 410
+ ++LP SVE + +IC ++Q + R +L IGE+ SL++L+ I ++ SG
Sbjct: 16 EAIKLPPSVEQMLNQICKNQRQNSPDETVRRLLLSIGEEGSLDILSKISVYQIK-KTLSG 74
Query: 409 FVACLVKKEYPIVA-------ATVLADYESPQASPQTQRI--WSPSSTSPYISPHTLNGE 257
F+ + KK Y T ++ ES SPQ QRI SP+S+S ++ NG
Sbjct: 75 FIVFIAKKYYQSETKQFYQQQQTPVSSAESFFQSPQIQRISLSSPNSSSSSVNFSPRNGP 134
Query: 256 NLQSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAG 77
Q+ + + + S+ + PQ +S S E ++ SY P+
Sbjct: 135 LFQATVHNNDIVGDGSDSPTSAPQMLSPPTSPERANFQRDSY-------------DPMPS 181
Query: 76 ERRETTEPMTISQQLMILNKLEYRK 2
E R IS+QL+ L+ LE+RK
Sbjct: 182 EYRNRAGIQGISEQLLALSNLEFRK 206
>ref|XP_017241746.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X3
[Daucus carota subsp. sativus]
Length = 879
Score = 72.8 bits (177), Expect = 5e-11
Identities = 73/217 (33%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Frame = -2
Query: 595 PHQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI-RS 419
P + LP+ VE I++IC E+KQP AR++LA IGE+ SL +LT I S T I ++
Sbjct: 4 PQTPIPLPERVETMIEQICKEQKQPHPDADARKILASIGEEKSLHMLTII--SQTQIKKT 61
Query: 418 FSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPY--ISPHTLNGENLQS 245
FSGF+ L+K P L+ SP+++ T +PSS S + I+ H S
Sbjct: 62 FSGFIKYLLKNYRP----KPLSHAMSPKSTLSTPHKRTPSSVSGWDDITSH--------S 109
Query: 244 PLLSFPVESPSSNLDRT-------GPQNISCQLSFEDETPEK---------RSYVIQEKK 113
P+L ++SP SN D+ + + QL+ SY KK
Sbjct: 110 PILKQFLQSPCSNSDKAVTPIAIGASSSTNVQLTGISVGEHSLASPCSTCGNSYANPRKK 169
Query: 112 SPSVRRQSPLAGERRETTEPMTISQQLMILNKLEYRK 2
R SP RE+T IS+Q IL +LE+RK
Sbjct: 170 ----LRFSPHVSINRESTS--AISKQWQILFELEFRK 200
>ref|XP_017241744.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
[Daucus carota subsp. sativus]
ref|XP_017241745.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
[Daucus carota subsp. sativus]
gb|KZN01938.1| hypothetical protein DCAR_010692 [Daucus carota subsp. sativus]
Length = 1050
Score = 72.8 bits (177), Expect = 5e-11
Identities = 73/217 (33%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Frame = -2
Query: 595 PHQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI-RS 419
P + LP+ VE I++IC E+KQP AR++LA IGE+ SL +LT I S T I ++
Sbjct: 4 PQTPIPLPERVETMIEQICKEQKQPHPDADARKILASIGEEKSLHMLTII--SQTQIKKT 61
Query: 418 FSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPY--ISPHTLNGENLQS 245
FSGF+ L+K P L+ SP+++ T +PSS S + I+ H S
Sbjct: 62 FSGFIKYLLKNYRP----KPLSHAMSPKSTLSTPHKRTPSSVSGWDDITSH--------S 109
Query: 244 PLLSFPVESPSSNLDRT-------GPQNISCQLSFEDETPEK---------RSYVIQEKK 113
P+L ++SP SN D+ + + QL+ SY KK
Sbjct: 110 PILKQFLQSPCSNSDKAVTPIAIGASSSTNVQLTGISVGEHSLASPCSTCGNSYANPRKK 169
Query: 112 SPSVRRQSPLAGERRETTEPMTISQQLMILNKLEYRK 2
R SP RE+T IS+Q IL +LE+RK
Sbjct: 170 ----LRFSPHVSINRESTS--AISKQWQILFELEFRK 200
>ref|XP_009760371.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Nicotiana sylvestris]
Length = 1058
Score = 72.0 bits (175), Expect = 1e-10
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 10/204 (4%)
Frame = -2
Query: 583 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSGFV 404
++LP SVE + +IC ++Q I R +L IGE+ SL++L+ I ++ SGF+
Sbjct: 17 IKLPPSVEQMLNQICKNQRQNPIDEKVRRLLLSIGEEGSLDILSKISVCQIK-KTLSGFI 75
Query: 403 ACLVKKEY-----PIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPL 239
+ KK Y T ++ ES SPQ QRI S +SP S ++N PL
Sbjct: 76 VFMAKKYYQSETQQFYQQTPVSSAESFFQSPQIQRI---SLSSPNSSSSSVNFSPRNGPL 132
Query: 238 LSFPVES---PSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQS--PLAGE 74
V + S+ + PQ +S S PE+ ++ RR S P+ E
Sbjct: 133 FQATVHNNVGDGSDSPTSAPQMLSPPTS-----PERTNF----------RRDSHDPMPSE 177
Query: 73 RRETTEPMTISQQLMILNKLEYRK 2
R IS+QL+ L+ LE+RK
Sbjct: 178 YRNRAGIQGISKQLLALSNLEFRK 201
>ref|XP_009603361.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
[Nicotiana tomentosiformis]
Length = 1063
Score = 68.6 bits (166), Expect = 2e-09
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 9/205 (4%)
Frame = -2
Query: 589 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSG 410
+ ++LP SVE + +IC ++Q R +L IGE+ SL++L+ I S ++ SG
Sbjct: 16 EAIKLPPSVEQMLNQICKNQRQNLPDKKVRRLLLSIGEEGSLDILSEISVSQIK-KTLSG 74
Query: 409 FVACLVKKEYPIVA-------ATVLADYESPQASPQTQRI--WSPSSTSPYISPHTLNGE 257
F+ + KK Y T ++ ES SPQ QRI SP+S+S I+ G
Sbjct: 75 FIVFMAKKYYQSETQQFYQQQPTQVSSAESFFQSPQIQRISLSSPNSSSSSINFSPRIGP 134
Query: 256 NLQSPLLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAG 77
Q+ + + + S+ + PQ +S +S E ++ Y P
Sbjct: 135 LFQATVHNNDIVGDGSDSPTSAPQMLSPPMSPERTIFQRDLY-------------DPTPS 181
Query: 76 ERRETTEPMTISQQLMILNKLEYRK 2
E R IS+QL+ L+ LE+RK
Sbjct: 182 EFRNRAGIQGISEQLLALSNLEFRK 206
>ref|XP_015163793.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
[Solanum tuberosum]
Length = 812
Score = 67.8 bits (164), Expect = 3e-09
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Frame = -2
Query: 577 LPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI-RSFSGFVA 401
LP SVE +++IC E+ Q + R L+ IGE+ SLE+L I S+ PI +S S F+
Sbjct: 20 LPYSVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKII--SSRPIKKSLSAFLV 77
Query: 400 CLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFPVE 221
L+ + YP ++ SP SP + S+SP + P + G+ +Q E
Sbjct: 78 YLIDR-YPDCLSS------SPFNSPLKR------SSSPLLFP-SPEGKRVQG-------E 116
Query: 220 SPSSN------LDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETT 59
SPS + L PQ ++ QLSF +E PE + RR SP
Sbjct: 117 SPSKSKLEMGFLACASPQKVARQLSFREE-PES-----------NCRRTSP--------- 155
Query: 58 EPMTISQQLMILNKLEYRK 2
+SQQLMILN+LE+RK
Sbjct: 156 ---NVSQQLMILNELEFRK 171
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
[Solanum tuberosum]
Length = 911
Score = 67.8 bits (164), Expect = 3e-09
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Frame = -2
Query: 577 LPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI-RSFSGFVA 401
LP SVE +++IC E+ Q + R L+ IGE+ SLE+L I S+ PI +S S F+
Sbjct: 20 LPYSVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKII--SSRPIKKSLSAFLV 77
Query: 400 CLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFPVE 221
L+ + YP ++ SP SP + S+SP + P + G+ +Q E
Sbjct: 78 YLIDR-YPDCLSS------SPFNSPLKR------SSSPLLFP-SPEGKRVQG-------E 116
Query: 220 SPSSN------LDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETT 59
SPS + L PQ ++ QLSF +E PE + RR SP
Sbjct: 117 SPSKSKLEMGFLACASPQKVARQLSFREE-PES-----------NCRRTSP--------- 155
Query: 58 EPMTISQQLMILNKLEYRK 2
+SQQLMILN+LE+RK
Sbjct: 156 ---NVSQQLMILNELEFRK 171
>gb|KJB07221.1| hypothetical protein B456_001G008800 [Gossypium raimondii]
Length = 1009
Score = 67.4 bits (163), Expect = 4e-09
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Frame = -2
Query: 607 MGASPHQEV-RLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNT 431
M + H++V LPQ+VEA I RIC E++QP + R+ LAE+GE+ASL +L I T
Sbjct: 105 MANNSHEDVVLLPQAVEALISRICNEQEQPRLGYSTRQALAEVGEEASLRILEKI--QRT 162
Query: 430 PIR-SFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGEN 254
IR +F FV +++ + + SPQ + + ++SP+ SP
Sbjct: 163 EIRTTFDRFVMYMIRND------------SNGNGSPQKRAKSAQLNSSPFSSPAKTCPLM 210
Query: 253 LQSPLLSFPVESPSSNLDRTG--PQNISCQL 167
+ S P++S S N +R G PQ+++ L
Sbjct: 211 MNSQASVTPIQSSSVNANREGFSPQSVATPL 241
>ref|XP_016474250.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Nicotiana tabacum]
Length = 1058
Score = 67.4 bits (163), Expect = 4e-09
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Frame = -2
Query: 589 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSG 410
+ ++LP SVE + +IC ++Q R +L IGE+ SL++L+ I S ++ SG
Sbjct: 16 EAIKLPPSVEQMLNQICKNQRQNLPDKKVRRLLLSIGEEGSLDILSEISVSQIK-KTLSG 74
Query: 409 FVACLVKKEYPIVA-------ATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENL 251
F+ + KK Y T ++ ES SPQ QRI S +SP S ++N
Sbjct: 75 FIVFMAKKYYQSETQQFYQQQPTQVSSAESFFQSPQIQRI---SLSSPNSSSSSINFSPR 131
Query: 250 QSPLLSFPVES---PSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLA 80
PL V + S+ + PQ +S +S E ++ Y P
Sbjct: 132 IGPLFQATVHNNVGDGSDSPTSAPQMLSPPMSPERTIFQRDLY-------------DPTP 178
Query: 79 GERRETTEPMTISQQLMILNKLEYRK 2
E R IS+QL+ L+ LE+RK
Sbjct: 179 SEFRNRAGIQGISEQLLALSNLEFRK 204
>ref|XP_009603362.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Nicotiana tomentosiformis]
Length = 1061
Score = 67.4 bits (163), Expect = 4e-09
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Frame = -2
Query: 589 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSG 410
+ ++LP SVE + +IC ++Q R +L IGE+ SL++L+ I S ++ SG
Sbjct: 16 EAIKLPPSVEQMLNQICKNQRQNLPDKKVRRLLLSIGEEGSLDILSEISVSQIK-KTLSG 74
Query: 409 FVACLVKKEYPIVA-------ATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENL 251
F+ + KK Y T ++ ES SPQ QRI S +SP S ++N
Sbjct: 75 FIVFMAKKYYQSETQQFYQQQPTQVSSAESFFQSPQIQRI---SLSSPNSSSSSINFSPR 131
Query: 250 QSPLLSFPVES---PSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLA 80
PL V + S+ + PQ +S +S E ++ Y P
Sbjct: 132 IGPLFQATVHNNVGDGSDSPTSAPQMLSPPMSPERTIFQRDLY-------------DPTP 178
Query: 79 GERRETTEPMTISQQLMILNKLEYRK 2
E R IS+QL+ L+ LE+RK
Sbjct: 179 SEFRNRAGIQGISEQLLALSNLEFRK 204
>ref|XP_012472313.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Gossypium raimondii]
Length = 1063
Score = 67.4 bits (163), Expect = 4e-09
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Frame = -2
Query: 607 MGASPHQEV-RLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNT 431
M + H++V LPQ+VEA I RIC E++QP + R+ LAE+GE+ASL +L I T
Sbjct: 58 MANNSHEDVVLLPQAVEALISRICNEQEQPRLGYSTRQALAEVGEEASLRILEKI--QRT 115
Query: 430 PIR-SFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGEN 254
IR +F FV +++ + + SPQ + + ++SP+ SP
Sbjct: 116 EIRTTFDRFVMYMIRND------------SNGNGSPQKRAKSAQLNSSPFSSPAKTCPLM 163
Query: 253 LQSPLLSFPVESPSSNLDRTG--PQNISCQL 167
+ S P++S S N +R G PQ+++ L
Sbjct: 164 MNSQASVTPIQSSSVNANREGFSPQSVATPL 194