BLASTX nr result
ID: Rehmannia30_contig00030699
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00030699
(1309 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009461153.1| RNA polymerase alpha subunit (plastid) [Lami... 44 3e-07
ref|YP_009344468.1| RNA polymerase alpha subunit (chloroplast) [... 46 8e-07
ref|YP_009354237.1| RNA polymerase alpha subunit (chloroplast) [... 46 1e-06
ref|YP_009354062.1| RNA polymerase alpha subunit (chloroplast) [... 46 1e-06
gb|APQ42803.1| RNA polymerase alpha subunit, partial (chloroplas... 44 2e-06
ref|YP_009309483.1| RNA polymerase alpha subunit (chloroplast) [... 44 2e-06
ref|YP_009002287.1| RNA polymerase alpha subunit (chloroplast) [... 45 3e-06
ref|YP_009254247.1| RNA polymerase alpha subunit (chloroplast) [... 44 3e-06
ref|YP_009364425.1| RNA polymerase alpha subunit (chloroplast) [... 44 4e-06
ref|YP_009445363.1| RNA polymerase alpha subunit (chloroplast) [... 44 4e-06
ref|YP_009445276.1| RNA polymerase alpha subunit (chloroplast) [... 44 4e-06
gb|ATV95922.1| RNA polymerase alpha subunit (chloroplast) [Primu... 44 4e-06
gb|ATG27894.1| RNA polymerase alpha subunit (chloroplast) [Primu... 44 4e-06
ref|YP_009366117.1| RNA polymerase alpha subunit (plastid) [Scut... 49 4e-06
ref|YP_009353974.1| RNA polymerase alpha subunit (chloroplast) [... 46 4e-06
ref|YP_009469032.1| RpoA (chloroplast) [Streptocarpus teitensis]... 44 5e-06
ref|YP_009306501.1| DNA0-directed RNA polymerase alpha subunit (... 48 5e-06
ref|YP_009387591.1| RNA polymerase alpha subunit (chloroplast) [... 43 7e-06
ref|YP_009387676.1| RNA polymerase alpha subunit (chloroplast) [... 43 7e-06
gb|AKZ23799.1| RNA polymerase alpha subunit (plastid) [Cicuta ma... 43 7e-06
>ref|YP_009461153.1| RNA polymerase alpha subunit (plastid) [Lamium galeobdolon]
gb|AUT82422.1| RNA polymerase alpha subunit (plastid) [Lamium galeobdolon]
Length = 346
Score = 43.9 bits (102), Expect(2) = 3e-07
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFRLEDVKQILG 322
Score = 40.8 bits (94), Expect(2) = 3e-07
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKEVY 192
KQ+LGILEKHFAIDLP+K+V+
Sbjct: 318 KQILGILEKHFAIDLPKKQVF 338
>ref|YP_009344468.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia chingii]
ref|YP_009354324.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia elata]
gb|APT42264.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia chingii]
gb|AQZ40854.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia elata]
Length = 337
Score = 46.2 bits (108), Expect(2) = 8e-07
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +3
Query: 3 FYLLKQQYVVLKDKIIPKSLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
F L + Y LK I +LLDLLNNSQEDLMKIKHF L+ +K +G
Sbjct: 277 FQLSPRVYNCLKRSNI-YTLLDLLNNSQEDLMKIKHFRLEDVKQLLG 322
Score = 37.0 bits (84), Expect(2) = 8e-07
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQLLGIL+KHFAIDLP+K+
Sbjct: 318 KQLLGILKKHFAIDLPKKK 336
>ref|YP_009354237.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia piasezkii]
gb|AQZ40767.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia piasezkii]
Length = 337
Score = 45.8 bits (107), Expect(2) = 1e-06
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +3
Query: 3 FYLLKQQYVVLKDKIIPKSLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
F L + Y LK I +LLDLLNNSQEDLMKIKHF L+ +K +G
Sbjct: 277 FELSPRVYNCLKRSNI-YTLLDLLNNSQEDLMKIKHFRLEDVKQLLG 322
Score = 37.0 bits (84), Expect(2) = 1e-06
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQLLGIL+KHFAIDLP+K+
Sbjct: 318 KQLLGILKKHFAIDLPKKK 336
>ref|YP_009354062.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia henryi]
ref|YP_009354149.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia solanifolia]
gb|AQZ40592.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia henryi]
gb|AQZ40680.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia solanifolia]
Length = 335
Score = 45.8 bits (107), Expect(2) = 1e-06
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +3
Query: 3 FYLLKQQYVVLKDKIIPKSLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
F L + Y LK I +LLDLLNNSQEDLMKIKHF L+ +K +G
Sbjct: 275 FELSPRVYNCLKRSNI-YTLLDLLNNSQEDLMKIKHFRLEDVKQLLG 320
Score = 37.0 bits (84), Expect(2) = 1e-06
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQLLGIL+KHFAIDLP+K+
Sbjct: 316 KQLLGILKKHFAIDLPKKK 334
>gb|APQ42803.1| RNA polymerase alpha subunit, partial (chloroplast) [Nuxia
floribunda]
Length = 153
Score = 44.3 bits (103), Expect(2) = 2e-06
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3
Query: 3 FYLLKQQYVVLKDKIIPKSLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
F L + Y LK I +LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 93 FELSPRVYNCLKRSNI-YTLLDLLNNSQEDLMKIEHFRLEDVKQILG 138
Score = 37.7 bits (86), Expect(2) = 2e-06
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQ+LGILEKHFAIDLP+K+
Sbjct: 134 KQILGILEKHFAIDLPKKK 152
>ref|YP_009309483.1| RNA polymerase alpha subunit (chloroplast) [Paulownia coreana]
ref|YP_009309570.1| RNA polymerase alpha subunit (chloroplast) [Paulownia tomentosa]
gb|AKM21544.1| RNA polymerase alpha subunit (chloroplast) [Paulownia coreana]
gb|AKM21631.1| RNA polymerase alpha subunit (chloroplast) [Paulownia tomentosa]
Length = 337
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFRLEDVKQILG 322
Score = 37.7 bits (86), Expect(2) = 2e-06
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQ+LGILEKHFAIDLP+K+
Sbjct: 318 KQILGILEKHFAIDLPKKK 336
>ref|YP_009002287.1| RNA polymerase alpha subunit (chloroplast) [Pinguicula ehlersiae]
emb|CDL78843.1| RNA polymerase alpha subunit (chloroplast) [Pinguicula ehlersiae]
Length = 337
Score = 45.4 bits (106), Expect(2) = 3e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKIKHF L+ +K +G
Sbjct: 292 TLLDLLNNSQEDLMKIKHFRLEDVKQILG 320
Score = 35.8 bits (81), Expect(2) = 3e-06
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQ+LGILEKHFAI+LP+K+
Sbjct: 316 KQILGILEKHFAINLPKKK 334
>ref|YP_009254247.1| RNA polymerase alpha subunit (chloroplast) [Erythranthe lutea]
gb|ANC62946.1| RNA polymerase alpha subunit (chloroplast) [Erythranthe lutea]
Length = 335
Score = 44.3 bits (103), Expect(2) = 3e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ IK +G
Sbjct: 292 TLLDLLNNSQEDLMKIEHFRLEDIKQILG 320
Score = 37.0 bits (84), Expect(2) = 3e-06
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQ+LGILEKHFA+DLP+K+
Sbjct: 316 KQILGILEKHFALDLPKKK 334
>ref|YP_009364425.1| RNA polymerase alpha subunit (chloroplast) [Lysionotus pauciflorus]
gb|ARF05916.1| RNA polymerase alpha subunit (chloroplast) [Lysionotus pauciflorus]
Length = 353
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFHLEDVKQILG 322
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFA+DLP+K
Sbjct: 318 KQILGILEKHFAVDLPKK 335
>ref|YP_009445363.1| RNA polymerase alpha subunit (chloroplast) [Primulina linearifolia]
gb|ATV96097.1| RNA polymerase alpha subunit (chloroplast) [Primulina linearifolia]
Length = 350
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFNLEDVKQILG 322
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFA+DLP+K
Sbjct: 318 KQILGILEKHFAVDLPKK 335
>ref|YP_009445276.1| RNA polymerase alpha subunit (chloroplast) [Primulina huaijiensis]
gb|ATV96010.1| RNA polymerase alpha subunit (chloroplast) [Primulina huaijiensis]
Length = 350
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFNLEDVKQILG 322
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFA+DLP+K
Sbjct: 318 KQILGILEKHFAVDLPKK 335
>gb|ATV95922.1| RNA polymerase alpha subunit (chloroplast) [Primulina eburnea]
Length = 350
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFNLEDVKQILG 322
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFA+DLP+K
Sbjct: 318 KQILGILEKHFAVDLPKK 335
>gb|ATG27894.1| RNA polymerase alpha subunit (chloroplast) [Primulina brachytricha
var. magnibracteata]
Length = 350
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFHLEDVKQILG 322
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFA+DLP+K
Sbjct: 318 KQILGILEKHFAVDLPKK 335
>ref|YP_009366117.1| RNA polymerase alpha subunit (plastid) [Scutellaria lateriflora]
gb|ARJ61616.1| RNA polymerase alpha subunit (plastid) [Scutellaria lateriflora]
Length = 337
Score = 48.5 bits (114), Expect(2) = 4e-06
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HFCL+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFCLEDVKEILG 322
Score = 32.3 bits (72), Expect(2) = 4e-06
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
K++LGILEK+FAI+LP+K+
Sbjct: 318 KEILGILEKNFAIELPKKK 336
>ref|YP_009353974.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia glutinosa]
gb|AQZ40505.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia glutinosa]
Length = 337
Score = 45.8 bits (107), Expect(2) = 4e-06
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +3
Query: 3 FYLLKQQYVVLKDKIIPKSLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
F L + Y LK I +LLDLLNNSQEDLMKIKHF L+ +K +G
Sbjct: 277 FELSPRVYNCLKRSNI-YTLLDLLNNSQEDLMKIKHFRLEDVKQLLG 322
Score = 35.0 bits (79), Expect(2) = 4e-06
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEKE 186
KQLLGIL+KHF IDLP+K+
Sbjct: 318 KQLLGILKKHFEIDLPKKK 336
>ref|YP_009469032.1| RpoA (chloroplast) [Streptocarpus teitensis]
gb|AVC55574.1| RpoA (chloroplast) [Streptocarpus teitensis]
Length = 350
Score = 43.9 bits (102), Expect(2) = 5e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF L+ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFHLEDVKQILG 322
Score = 36.6 bits (83), Expect(2) = 5e-06
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LG+LEKHFA+DLP+K
Sbjct: 318 KQILGVLEKHFAVDLPKK 335
>ref|YP_009306501.1| DNA0-directed RNA polymerase alpha subunit (chloroplast) [Helwingia
himalaica]
gb|AOP19418.1| DNA0-directed RNA polymerase alpha subunit (chloroplast) [Helwingia
himalaica]
Length = 337
Score = 47.8 bits (112), Expect(2) = 5e-06
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HFC++ +K +G
Sbjct: 294 TLLDLLNNSQEDLMKIEHFCIEDVKQILG 322
Score = 32.7 bits (73), Expect(2) = 5e-06
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLP 177
KQ+LG LEKHFA+DLP
Sbjct: 318 KQILGFLEKHFALDLP 333
>ref|YP_009387591.1| RNA polymerase alpha subunit (chloroplast) [Hansenia
weberbaueriana]
gb|ART32490.1| RNA polymerase alpha subunit (chloroplast) [Hansenia
weberbaueriana]
Length = 353
Score = 42.7 bits (99), Expect(2) = 7e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF ++ +K +G
Sbjct: 295 TLLDLLNNSQEDLMKIEHFHINDVKQILG 323
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFAIDLP+K
Sbjct: 319 KQILGILEKHFAIDLPKK 336
>ref|YP_009387676.1| RNA polymerase alpha subunit (chloroplast) [Hansenia forbesii]
gb|ART32574.1| RNA polymerase alpha subunit (chloroplast) [Hansenia forbesii]
Length = 353
Score = 42.7 bits (99), Expect(2) = 7e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF ++ +K +G
Sbjct: 295 TLLDLLNNSQEDLMKIEHFHINDVKQILG 323
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFAIDLP+K
Sbjct: 319 KQILGILEKHFAIDLPKK 336
>gb|AKZ23799.1| RNA polymerase alpha subunit (plastid) [Cicuta maculata]
Length = 353
Score = 42.7 bits (99), Expect(2) = 7e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 57 SLLDLLNNSQEDLMKIKHFCLDVIKTAIG 143
+LLDLLNNSQEDLMKI+HF ++ +K +G
Sbjct: 295 TLLDLLNNSQEDLMKIEHFRINDVKQILG 323
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 130 KQLLGILEKHFAIDLPEK 183
KQ+LGILEKHFAIDLP+K
Sbjct: 319 KQILGILEKHFAIDLPKK 336