BLASTX nr result

ID: Rehmannia30_contig00027580 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00027580
         (418 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011097425.1| ATP-dependent RNA helicase-like protein DB10...    65   2e-09
gb|PIN04912.1| ATP-dependent RNA helicase [Handroanthus impetigi...    64   4e-09
ref|XP_022859389.1| ATP-dependent RNA helicase-like protein DB10...    55   4e-06
ref|XP_011098453.1| ATP-dependent RNA helicase-like protein DB10...    55   7e-06

>ref|XP_011097425.1| ATP-dependent RNA helicase-like protein DB10 [Sesamum indicum]
          Length = 779

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = +2

Query: 245 FSFNAH-RHDYGSSGHDTNATGGYQYKSFHESMMAAAKNGGGTNCSRSRSPDKNLGWAE 418
           + +  H RH  GS   DTNATG + YKSFHESMMAAAK+GG    +   SP++N GW E
Sbjct: 586 YDYKQHERHGAGSFEQDTNATGSFHYKSFHESMMAAAKDGG----TSGSSPNRNFGWVE 640


>gb|PIN04912.1| ATP-dependent RNA helicase [Handroanthus impetiginosus]
          Length = 740

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 38/77 (49%), Positives = 46/77 (59%)
 Frame = +2

Query: 188 GGGGLRLACSICAACGLRFFSFNAHRHDYGSSGHDTNATGGYQYKSFHESMMAAAKNGGG 367
           G GG  ++ SI    G  + +    RHD GSSG++TNATG     SFHE MMAA +NG  
Sbjct: 578 GKGGWGMSSSIDKGFGFGYDNEQPDRHDSGSSGYNTNATG-----SFHERMMAAPRNG-- 630

Query: 368 TNCSRSRSPDKNLGWAE 418
            + S SRSP  N GWAE
Sbjct: 631 -DSSSSRSPRGNSGWAE 646


>ref|XP_022859389.1| ATP-dependent RNA helicase-like protein DB10, partial [Olea
           europaea var. sylvestris]
          Length = 406

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 30/52 (57%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +2

Query: 266 HDYGS-SGHDTNATGGYQYKSFHESMMAAAKNGGGTNCSRSRSPDKNLGWAE 418
           H YGS S HD +  G  Q+KSFHESMMA   N    + SRSRSP+KN GW E
Sbjct: 348 HSYGSHSVHDGDGPGSSQFKSFHESMMA---NNTSRSRSRSRSPNKNSGWGE 396


>ref|XP_011098453.1| ATP-dependent RNA helicase-like protein DB10 [Sesamum indicum]
          Length = 803

 Score = 54.7 bits (130), Expect = 7e-06
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +2

Query: 263 RHDYGSSGHDTNATGGYQYKSFHESMMAAAKNGGGTNCSRSRSPDKNLGWAE 418
           R  +GS   D   T G+ YKSFHES+ A AKN G +  SRSRSP++N GW E
Sbjct: 594 RDRHGSGTSDGQDTIGFHYKSFHESVTATAKNRGRSR-SRSRSPNRNSGWGE 644


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