BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00026989
         (763 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP72277.1| Retrotransposable element Tf2 [Cajanus cajan]          275   2e-89
ref|XP_016472554.1| PREDICTED: uncharacterized protein LOC107794...   278   2e-89
dbj|GAV81381.1| RVT_1 domain-containing protein/zf-CCHC domain-c...   287   4e-88
gb|PKA63075.1| hypothetical protein AXF42_Ash007871 [Apostasia s...   276   1e-87
gb|EOY14138.1| Uncharacterized protein TCM_033423 [Theobroma cacao]   283   1e-86
gb|KYP69549.1| Retrotransposable element Tf2 [Cajanus cajan]          263   5e-85
ref|XP_017216862.1| PREDICTED: uncharacterized protein LOC108194...   286   6e-85
gb|PKA45782.1| hypothetical protein AXF42_Ash018333 [Apostasia s...   262   1e-84
gb|OMO87331.1| Integrase, catalytic core [Corchorus capsularis]       270   1e-84
gb|KZV40786.1| DNA/RNA polymerase superfamily protein [Dorcocera...   269   3e-84
gb|OMO91869.1| reverse transcriptase [Corchorus capsularis]           283   4e-84
gb|PRQ45918.1| putative nucleotidyltransferase, Ribonuclease H [...   276   6e-84
gb|AAP43915.1| integrase, partial [Gossypium herbaceum]               263   6e-84
gb|PNX84232.1| retrotransposon-related protein [Trifolium pratense]   262   2e-83
gb|PKA58643.1| RNA-directed DNA polymerase like [Apostasia shenz...   271   2e-83
gb|KYP50860.1| Retrotransposable element Tf2 [Cajanus cajan]          266   1e-82
emb|CAA73042.1| polyprotein, partial [Ananas comosus]                 273   2e-82
gb|KYP31581.1| Retrotransposable element Tf2 [Cajanus cajan]          265   3e-82
gb|KYP52342.1| Retrotransposable element Tf2 [Cajanus cajan]          255   4e-82
gb|KYP36025.1| Retrotransposable element Tf2 [Cajanus cajan]          268   7e-82

>gb|KYP72277.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 286

 Score =  275 bits (704), Expect = 2e-89
 Identities = 128/254 (50%), Positives = 178/254 (70%), Gaps = 3/254 (1%)
 Frame = -3

Query: 761 DALSRKT-YVARLMIREWKSLEELSYWN--PKKVGIQLLCANLSVKPELLTEILLSQQKD 591
           DALSRK+ +++ +M+RE + +EE    N   +     + C  +++  E L ++ L Q +D
Sbjct: 29  DALSRKSIHISGMMLRELELVEEFRDLNLCVELAQDHISCGAVTITNEFLRQVGLKQLQD 88

Query: 590 HKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGGK 411
            +       +     + F+LG+D ILRFR RIC+P D +L+R +L E H S+ +IHPG  
Sbjct: 89  EELVRLLGLLGTEKAAGFELGEDGILRFRGRICLPQDAELRRAVLEEGHKSRLSIHPGMT 148

Query: 410 KMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMDF 231
           KMYQDL+++FWW  MK ++ E+VA CLTCQ+ K EHQ+PSGL+Q + IPEWKW+ ITMDF
Sbjct: 149 KMYQDLRKNFWWSGMKREIPEYVAACLTCQKAKVEHQKPSGLMQQIEIPEWKWDNITMDF 208

Query: 230 VTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVSD 51
           V  LP++    DAIWV+VDRLTK AHFLPI    SL++L Q+Y++E++RLHGVP  I+SD
Sbjct: 209 VVGLPRSARNSDAIWVIVDRLTKCAHFLPINIKWSLEKLTQLYVKELVRLHGVPSSIISD 268

Query: 50  RDPRFVSRFWKSLH 9
           RDPRF SRFW+SLH
Sbjct: 269 RDPRFTSRFWQSLH 282


>ref|XP_016472554.1| PREDICTED: uncharacterized protein LOC107794570 [Nicotiana tabacum]
          Length = 381

 Score =  278 bits (712), Expect = 2e-89
 Identities = 127/218 (58%), Positives = 168/218 (77%), Gaps = 1/218 (0%)
 Frame = -3

Query: 656 LCANLSVKPELLTEILLSQQKDHKFGEFKNKMIQRGKS-DFKLGDDSILRFRNRICIPHD 480
           + AN  VKP LL ++  +Q+ D K  + + + +Q G+  DF L  D  L ++NR+C+P+D
Sbjct: 13  IIANSPVKPVLLEQVQEAQKLDEKLVK-RVEEVQNGRELDFSLRKDGTLFYKNRLCVPND 71

Query: 479 EDLKRKILSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQ 300
           ++L+++IL EAH S Y +HPGG KMY+ +K H+WW  MK  +AEF++KCL CQ++KAEHQ
Sbjct: 72  DELRKQILIEAHSSPYAMHPGGTKMYRTIKEHYWWSGMKKDIAEFISKCLVCQQIKAEHQ 131

Query: 299 RPSGLLQPLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQ 120
            P+GLLQPL+IPEWKWE+ITMDFV+ LP T+  HDAIWV+VDRLTKSAHFL IR   SL+
Sbjct: 132 VPAGLLQPLSIPEWKWERITMDFVSGLPHTQRNHDAIWVIVDRLTKSAHFLAIRMDYSLE 191

Query: 119 RLAQIYIREIIRLHGVPEDIVSDRDPRFVSRFWKSLHE 6
           RLA++YI EI++LHG+P  IVSDRDPRF SRFW SL E
Sbjct: 192 RLAELYINEIVKLHGIPVSIVSDRDPRFTSRFWSSLQE 229


>dbj|GAV81381.1| RVT_1 domain-containing protein/zf-CCHC domain-containing protein/rve
            domain-containing protein/RVP_2 domain-containing
            protein, partial [Cephalotus follicularis]
          Length = 813

 Score =  287 bits (734), Expect = 4e-88
 Identities = 132/248 (53%), Positives = 175/248 (70%)
 Frame = -3

Query: 761  DALSRKTYVARLMIREWKSLEELSYWNPKKVGIQLLCANLSVKPELLTEILLSQQKDHKF 582
            DALSRK  VA  M+ +WK LE+   W+P      +  A++ V+P LL  I  +Q  D + 
Sbjct: 523  DALSRKAMVANAMVSQWKLLEDFQEWSPFNQSPGIFLASMRVEPVLLHHIKDAQPHDPEL 582

Query: 581  GEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGGKKMY 402
               +  +    +SDF++ +D I+R+R R+C+P++ +LK ++L  AH S Y+IHPG  KMY
Sbjct: 583  QRIRENL--DSESDFRVHNDGIMRYRGRVCLPNEPELKGRLLHAAHKSTYSIHPGSTKMY 640

Query: 401  QDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMDFVTD 222
            QD+ + +WW  MK ++A++VAKC TCQ VKAEHQRP+GLLQPL IPEWKWE +TMDFV  
Sbjct: 641  QDMNKCYWWPGMKREIADYVAKCYTCQTVKAEHQRPAGLLQPLPIPEWKWEHVTMDFVLG 700

Query: 221  LPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVSDRDP 42
             P TRN H+AIWV+VDRLTKSAHFLP   TDS  +LA++YI+EI+RLHGVP  IV DRD 
Sbjct: 701  FPLTRNRHNAIWVIVDRLTKSAHFLPTHVTDSASKLARVYIKEIVRLHGVPVSIVCDRDS 760

Query: 41   RFVSRFWK 18
             F S FW+
Sbjct: 761  IFTSNFWR 768


>gb|PKA63075.1| hypothetical protein AXF42_Ash007871 [Apostasia shenzhenica]
          Length = 461

 Score =  276 bits (707), Expect = 1e-87
 Identities = 131/258 (50%), Positives = 187/258 (72%), Gaps = 7/258 (2%)
 Frame = -3

Query: 761 DALSRKTYVARLMIREWKSLEELSYWNPKKVGIQ-------LLCANLSVKPELLTEILLS 603
           DALSRK ++  L + +    E+   +  +K+ +Q       +  + L + P  L ++  +
Sbjct: 95  DALSRKVHINMLTVEK---NEQQLVFEIEKLQLQSSIDHSLIRLSQLLITPNWLQQVKEN 151

Query: 602 QQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIH 423
           Q +D +  +   K+ Q   SDFKL D+ +L+F+NR+CIP+ +D+++ +L EAH+SK+++H
Sbjct: 152 QIQDPELTKLMQKLQQGWTSDFKL-DNGVLKFKNRMCIPNVDDIRQLLLREAHYSKFSVH 210

Query: 422 PGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKI 243
           PGG KMYQ LK+  WW  +K  VAEFV+KCLTCQ+VK EHQRPSG+LQPL+IP WKWE+I
Sbjct: 211 PGGNKMYQGLKQMVWWPGLKKDVAEFVSKCLTCQQVKGEHQRPSGMLQPLSIPMWKWEEI 270

Query: 242 TMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPED 63
            MDFV  LP+++ G DAIWVVVDRLTKSAHFLPI+ TD+ +RLA++Y+ +IIRLHG+P+ 
Sbjct: 271 AMDFVIGLPRSQQGRDAIWVVVDRLTKSAHFLPIKTTDTAERLAKLYVEQIIRLHGIPKV 330

Query: 62  IVSDRDPRFVSRFWKSLH 9
           I+SDRD +F S FWK +H
Sbjct: 331 IISDRDSKFTSHFWKKVH 348


>gb|EOY14138.1| Uncharacterized protein TCM_033423 [Theobroma cacao]
          Length = 809

 Score =  283 bits (724), Expect = 1e-86
 Identities = 143/261 (54%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
 Frame = -3

Query: 761  DALSRKTY--VARLMIREWKSLEELSYWNPKKVGIQL-------LCANLSVKPELLTEIL 609
            DALSRK+   +A L    +  L E+     K +GIQL       L A+  V+P LL +I 
Sbjct: 501  DALSRKSSSSLATLQSSYFSMLLEM-----KSLGIQLNNGEDGTLLASFVVRPSLLNQIR 555

Query: 608  LSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYT 429
              Q+ D    +   K+     S+F+L DD I   R+RIC+P D+ L+R IL EAH S Y 
Sbjct: 556  ELQKSDDWLKQEVQKLQDGEASEFRLNDDGIFMLRDRICVPKDDQLRRAILEEAHSSAYA 615

Query: 428  IHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWE 249
            +HPG  KMY+ +K  +WW  MK  +AEFVAKCLTCQ++KAEHQ+PSG LQPL IPEWKWE
Sbjct: 616  LHPGSTKMYRTIKESYWWPGMKRDIAEFVAKCLTCQQIKAEHQKPSGTLQPLLIPEWKWE 675

Query: 248  KITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVP 69
             +TMDFV  LP+T++G DAIWV+VDRLTKSAHFL I  T S++RLA++YI EI+RLHGVP
Sbjct: 676  HVTMDFVLGLPRTQSGKDAIWVIVDRLTKSAHFLAIHSTYSIERLARLYIDEIVRLHGVP 735

Query: 68   EDIVSDRDPRFVSRFWKSLHE 6
              IVSDRDPRF SRFW   HE
Sbjct: 736  VSIVSDRDPRFTSRFWPKFHE 756


>gb|KYP69549.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 261

 Score =  263 bits (672), Expect = 5e-85
 Identities = 124/209 (59%), Positives = 153/209 (73%)
 Frame = -3

Query: 638 VKPELLTEILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKI 459
           V  ELL EI  +Q  D      ++ + Q    +F LG D +LRF+NR+C+P D  L+  I
Sbjct: 4   VTSELLREIGEAQLVDSFLVARRDAIGQGIGGEFTLGVDGVLRFKNRVCVPSDPTLRCLI 63

Query: 458 LSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQ 279
           L E H SK + HPG  KMYQDL++ FWW  MK  +A FV+ CL CQ+ K EHQ+PSGLLQ
Sbjct: 64  LEEGHGSKLSFHPGATKMYQDLRKIFWWPRMKKDIAAFVSACLVCQKAKIEHQKPSGLLQ 123

Query: 278 PLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYI 99
           PL+IPEWKW+ I+MDFV  LP+TR GHD+IWV+VDRLTKSAHFLPI    SL+RLA++YI
Sbjct: 124 PLSIPEWKWDSISMDFVVALPRTRRGHDSIWVIVDRLTKSAHFLPINIRYSLERLARLYI 183

Query: 98  REIIRLHGVPEDIVSDRDPRFVSRFWKSL 12
            EI+RLHG+P  IVSDRDPRF SRFW+SL
Sbjct: 184 NEIVRLHGIPSSIVSDRDPRFTSRFWESL 212


>ref|XP_017216862.1| PREDICTED: uncharacterized protein LOC108194427 [Daucus carota subsp.
            sativus]
          Length = 1810

 Score =  286 bits (732), Expect = 6e-85
 Identities = 146/258 (56%), Positives = 184/258 (71%), Gaps = 6/258 (2%)
 Frame = -3

Query: 761  DALSRK-TYVARLMIREWKSLEELSYWNPKKVGIQL-----LCANLSVKPELLTEILLSQ 600
            DALSRK + VA L    + SL EL   N   +G+++     L A L+++P L   I  +Q
Sbjct: 1278 DALSRKCSSVANLQGSTFPSLVELRKMN---IGLEVDTCGVLLATLNIRPVLKERIQKAQ 1334

Query: 599  QKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHP 420
              D K  +   ++ Q  ++ F L +D+++   NRIC+P+DEDL+R+IL EAH++ Y +HP
Sbjct: 1335 INDPKLRDAVERVRQGQENQFTLYEDTLM-LGNRICVPNDEDLRREILDEAHNAPYAMHP 1393

Query: 419  GGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKIT 240
            G  KMY  +K H+WW  MK  VAEF AKCLTCQ+VK EHQ P+G L PL+IPEWKWEKIT
Sbjct: 1394 GATKMYNTMKSHYWWSGMKRDVAEFTAKCLTCQQVKVEHQAPAGKLHPLSIPEWKWEKIT 1453

Query: 239  MDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDI 60
            MDFVT+LPKTR G+DAIW++VDRLTKSAHFLPIR   +L  LAQ Y+ EI+RLHGVP  I
Sbjct: 1454 MDFVTNLPKTRKGNDAIWIIVDRLTKSAHFLPIRWGCTLDHLAQRYVNEIVRLHGVPISI 1513

Query: 59   VSDRDPRFVSRFWKSLHE 6
            VSDRDPRF SRFWKSL E
Sbjct: 1514 VSDRDPRFTSRFWKSLQE 1531


>gb|PKA45782.1| hypothetical protein AXF42_Ash018333 [Apostasia shenzhenica]
          Length = 263

 Score =  262 bits (670), Expect = 1e-84
 Identities = 122/217 (56%), Positives = 159/217 (73%)
 Frame = -3

Query: 656 LCANLSVKPELLTEILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDE 477
           + A+L V+P L  +I  +QQ+D +  +    +++    +F +G D ILRFRNRI IP+  
Sbjct: 1   MIAHLCVQPNLHEKIKKAQQEDSEIAKIAQSIMKEDNPEFMIGSDGILRFRNRIYIPNSP 60

Query: 476 DLKRKILSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQR 297
           +LKR+ILSEAH + Y+IHPGG KMY DL+  FWW+ MKN + + +++CL CQRVK EHQR
Sbjct: 61  ELKREILSEAHSAGYSIHPGGTKMYHDLREQFWWLGMKNDIIKVISRCLVCQRVKIEHQR 120

Query: 296 PSGLLQPLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQR 117
             GLLQ L IP WKWE ITMDF+  LPK++ G DAIWV+VDRLTKSAHFLPI+ T  L+ 
Sbjct: 121 LGGLLQSLEIPTWKWEHITMDFICGLPKSK-GCDAIWVIVDRLTKSAHFLPIKMTHLLEY 179

Query: 116 LAQIYIREIIRLHGVPEDIVSDRDPRFVSRFWKSLHE 6
           L+++YI EI+RLHGVP  I+SDRDP F SR W SL +
Sbjct: 180 LSKLYIDEIVRLHGVPTSIISDRDPHFASRLWSSLQK 216


>gb|OMO87331.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 492

 Score =  270 bits (689), Expect = 1e-84
 Identities = 130/261 (49%), Positives = 175/261 (67%), Gaps = 12/261 (4%)
 Frame = -3

Query: 758 ALSRKTYVARLMIREWKSLEELSYWNPKKVGIQLLCANL------------SVKPELLTE 615
           ALSRK+      I+ +          P+ VGI+ + ANL             V+P L+ +
Sbjct: 187 ALSRKSSTTMARIKSYL---------PQLVGIRFVGANLIGGYQGTLLARFEVRPTLVDQ 237

Query: 614 ILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSK 435
           I  SQ+ D K      K+     S++ L DD +L+   R+C+P +E+LKR +L EAH S 
Sbjct: 238 IRDSQEVDEKLNAELEKLYLGMPSEYSLRDDGVLQKLGRVCVPDNEELKRAVLEEAHSSA 297

Query: 434 YTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWK 255
           Y ++PG  KMY+ ++  +WW  MK  ++EFV++CL CQ+VKAEHQ+P+G LQPL IPEWK
Sbjct: 298 YALYPGSTKMYRTIRESYWWPGMKKDISEFVSRCLVCQQVKAEHQKPTGTLQPLPIPEWK 357

Query: 254 WEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHG 75
           WE IT+DF+  LP+TR+GHDAIWV+VDRLTKSAHFLP+R T + +RLA++Y+ EI+RLHG
Sbjct: 358 WEHITLDFIVGLPRTRHGHDAIWVIVDRLTKSAHFLPVRITFNTKRLARLYVAEIVRLHG 417

Query: 74  VPEDIVSDRDPRFVSRFWKSL 12
           VP  IVSDRDPRF SRFW  L
Sbjct: 418 VPVSIVSDRDPRFTSRFWPKL 438


>gb|KZV40786.1| DNA/RNA polymerase superfamily protein [Dorcoceras hygrometricum]
          Length = 501

 Score =  269 bits (688), Expect = 3e-84
 Identities = 130/255 (50%), Positives = 182/255 (71%), Gaps = 3/255 (1%)
 Frame = -3

Query: 761 DALSRKTY-VARLMIRE--WKSLEELSYWNPKKVGIQLLCANLSVKPELLTEILLSQQKD 591
           DALSRK+  +A++ +++   K +E             ++ A+LSV+  LL  I   QQ+D
Sbjct: 29  DALSRKSARLAQVTVQQPLAKEIERFGLELVSSSSSNIILADLSVRSNLLNRIREGQQQD 88

Query: 590 HKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGGK 411
            +  ++  +  +RG S +   +D I+R+  RI +P   DL+ K+L EAH + Y++HPG  
Sbjct: 89  QQLKKWVQQNKERGNSLY-FSEDGIVRYLGRIWVPQVNDLRAKLLKEAHTAPYSVHPGST 147

Query: 410 KMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMDF 231
           KMY+DL++ +WW  MK  VA+FVA+CLTCQ VKAEHQRP+GLL+PL IPEWKWE ITMDF
Sbjct: 148 KMYKDLQQLYWWPGMKRDVAKFVAECLTCQLVKAEHQRPAGLLKPLPIPEWKWESITMDF 207

Query: 230 VTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVSD 51
           VT LP+T  G+++IWV++DRLTKSAHFLP++ T  + R A++Y++EI+RLHGVP  IVSD
Sbjct: 208 VTGLPRTVQGYNSIWVIIDRLTKSAHFLPVKMTYEVSRYAELYVKEIVRLHGVPISIVSD 267

Query: 50  RDPRFVSRFWKSLHE 6
           RDP+F S FWKSLH+
Sbjct: 268 RDPKFTSAFWKSLHK 282


>gb|OMO91869.1| reverse transcriptase [Corchorus capsularis]
          Length = 1401

 Score =  283 bits (725), Expect = 4e-84
 Identities = 142/254 (55%), Positives = 187/254 (73%), Gaps = 4/254 (1%)
 Frame = -3

Query: 761  DALSRKTY--VARLMIREWKSLEELSYWNPKKV--GIQLLCANLSVKPELLTEILLSQQK 594
            DALSRK+   +A L+  + + LEEL     + V  G  +L A+L V+P L+  I ++Q+ 
Sbjct: 941  DALSRKSTGSMAALITTQRRLLEELDGEQIEVVMQGEGVLLASLVVQPSLIERIKVAQKD 1000

Query: 593  DHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGG 414
            D +    K  +    K+DF +  D  L+F +R+C+P+D  LKR+IL EAH S++TIHPGG
Sbjct: 1001 DLELCRIKEDVENGLKTDFNIHIDGTLQFGSRLCVPNDFVLKREILEEAHGSRFTIHPGG 1060

Query: 413  KKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMD 234
             KMY+DLK +FWW NMK ++A+FV++CL CQ+VKAEHQRPSGLLQPL IPEWKWE I+MD
Sbjct: 1061 TKMYKDLKENFWWNNMKREIAQFVSQCLVCQQVKAEHQRPSGLLQPLEIPEWKWEHISMD 1120

Query: 233  FVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVS 54
            FV  LP++  G++ IWV+VDRLTKSAHFLPI+ T  L +LAQ+Y+ EI+RLHGVP  IVS
Sbjct: 1121 FVMGLPRSTKGNNVIWVIVDRLTKSAHFLPIKSTTPLDKLAQMYVDEIVRLHGVPVSIVS 1180

Query: 53   DRDPRFVSRFWKSL 12
            DRD RFVS+FW SL
Sbjct: 1181 DRDSRFVSKFWASL 1194


>gb|PRQ45918.1| putative nucleotidyltransferase, Ribonuclease H [Rosa chinensis]
          Length = 815

 Score =  276 bits (706), Expect = 6e-84
 Identities = 131/263 (49%), Positives = 177/263 (67%), Gaps = 11/263 (4%)
 Frame = -3

Query: 761  DALSRKTYVARL---MIREWKSLEELSYWNPKKVGIQL--------LCANLSVKPELLTE 615
            DALSRKTY + L    +   +++     +  +  G+ L        L A+  V+P L+ +
Sbjct: 285  DALSRKTYPSLLPSPSLSHMRTVRVPLLYELRATGVSLEGTDEFAALIASFHVRPILIDK 344

Query: 614  ILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSK 435
            +  +Q  D    E +  +    + DF +  D  L F NRIC+P  +DLK++IL EAH S 
Sbjct: 345  VREAQLHDEALQEVREAVENGAREDFIVRGDGALMFGNRICVPKQDDLKQEILEEAHSSP 404

Query: 434  YTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWK 255
            Y +HPGG KMY+ LK ++WW NMK ++A++V +CL CQ+VKAE Q+PSGLLQPL IPEWK
Sbjct: 405  YAMHPGGTKMYRTLKEYYWWSNMKREIADYVRRCLVCQQVKAERQKPSGLLQPLPIPEWK 464

Query: 254  WEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHG 75
            WE ITMDFV+ LP++RNGHD+IWV+VDRLTKSAHFLP+ KT  + + A++Y+ EI+RLHG
Sbjct: 465  WEHITMDFVSGLPRSRNGHDSIWVIVDRLTKSAHFLPVSKTYKMDKYAELYLNEIVRLHG 524

Query: 74   VPEDIVSDRDPRFVSRFWKSLHE 6
             P  I SDRDPRF S+FW  L E
Sbjct: 525  TPVSITSDRDPRFTSKFWSELME 547


>gb|AAP43915.1| integrase, partial [Gossypium herbaceum]
          Length = 350

 Score =  263 bits (673), Expect = 6e-84
 Identities = 128/252 (50%), Positives = 173/252 (68%)
 Frame = -3

Query: 761 DALSRKTYVARLMIREWKSLEELSYWNPKKVGIQLLCANLSVKPELLTEILLSQQKDHKF 582
           DALSRK+  A   +  + S+          +   +L A L  KP L  +I  +Q+ D + 
Sbjct: 95  DALSRKSLFALRAMNVYLSI----------LPDNVLVAELKAKPLLTHQIREAQKVDEEL 144

Query: 581 GEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGGKKMY 402
              + + +   +S+F++ DD  LRFR+R+C+P + +L   IL+EAH S+  IHPG  KMY
Sbjct: 145 LAKRAECVLNKESEFQIDDDDCLRFRSRLCVPKNSELILIILNEAHCSRMAIHPGSTKMY 204

Query: 401 QDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMDFVTD 222
            DLKR FWW  MK  + +FV++CL CQ+VKAEHQ PSGLLQP+ IPEWKW+++TMDFV+ 
Sbjct: 205 NDLKRRFWWHGMKRDIFDFVSRCLICQQVKAEHQVPSGLLQPITIPEWKWDRVTMDFVSG 264

Query: 221 LPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVSDRDP 42
           LP + +  DAIWVVVDRLTKSAHF+P+R   SL +LA++Y+ +I+RLHGVP  +VSDRDP
Sbjct: 265 LPLSASKKDAIWVVVDRLTKSAHFIPVRTDFSLDKLAELYVSQIVRLHGVPISVVSDRDP 324

Query: 41  RFVSRFWKSLHE 6
           RF SRFWK L E
Sbjct: 325 RFTSRFWKKLQE 336


>gb|PNX84232.1| retrotransposon-related protein [Trifolium pratense]
          Length = 347

 Score =  262 bits (669), Expect = 2e-83
 Identities = 132/258 (51%), Positives = 174/258 (67%), Gaps = 6/258 (2%)
 Frame = -3

Query: 761 DALSRKTYVAR---LMIRE---WKSLEELSYWNPKKVGIQLLCANLSVKPELLTEILLSQ 600
           DALSR+   A    +M+R+   W+   +L        G  L  + + V   L+ EI  + 
Sbjct: 6   DALSRQNAFAASATVMVRQQELWEEFRDLHLDVDFSPG-SLKLSMIKVANGLMEEIA-NH 63

Query: 599 QKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHP 420
           Q D    E +  M+Q   SDFK+G D+ILR   RIC+P+  ++++KIL EAH SK +IHP
Sbjct: 64  QDDDLIQERRELMVQGKASDFKVGPDNILRCNERICVPNVAEIRKKILDEAHKSKLSIHP 123

Query: 419 GGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKIT 240
           G  KMYQDLK++FWW  MK QVAE+VA CL CQ+ K EHQRP+G LQ L +PEWKW  I+
Sbjct: 124 GMTKMYQDLKQNFWWPGMKKQVAEYVASCLNCQKAKIEHQRPAGKLQSLDVPEWKWTSIS 183

Query: 239 MDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDI 60
           MDF+T LPKT+  +D+IWV+VDRLTK+AHFL ++ T  + +  +IYI EI+RLHGVP  I
Sbjct: 184 MDFITGLPKTQKKNDSIWVIVDRLTKAAHFLGVKTTYKMPKYTEIYIAEIVRLHGVPSSI 243

Query: 59  VSDRDPRFVSRFWKSLHE 6
           VSDRDP+F S FWK LH+
Sbjct: 244 VSDRDPKFTSHFWKELHK 261


>gb|PKA58643.1| RNA-directed DNA polymerase like [Apostasia shenzhenica]
          Length = 649

 Score =  271 bits (692), Expect = 2e-83
 Identities = 132/256 (51%), Positives = 177/256 (69%), Gaps = 5/256 (1%)
 Frame = -3

Query: 761  DALSRKTYVARLMIREWKSL-----EELSYWNPKKVGIQLLCANLSVKPELLTEILLSQQ 597
            DALSRK  ++ + +   + L     E+LS    ++  + LL + L V+P+ L  ++  Q 
Sbjct: 355  DALSRKANLSIISLTREEQLIVFEMEKLSLTGIEENNLTLL-SQLIVRPDWLQMVVEGQS 413

Query: 596  KDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPG 417
            KD    +   K+I    S+F L +  +LR R R+CIP  + L++ +L E+H+SKYTIHPG
Sbjct: 414  KDLAMQKIIEKVIGGETSEFSLDECGVLRLRTRLCIPDTDGLRQMLLQESHNSKYTIHPG 473

Query: 416  GKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITM 237
              KMY DLK+  WW  MK  V E V+KC++CQ+VK+EHQRPSGLLQPL IP WKWE++ M
Sbjct: 474  VNKMYNDLKQIAWWPGMKKDVVETVSKCISCQQVKSEHQRPSGLLQPLPIPMWKWEEVAM 533

Query: 236  DFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIV 57
            DFV  LP+++ GHD IWVVVDRLTK+AHFLPI+  DS  +LA +Y++EI+RLHGVP  IV
Sbjct: 534  DFVIGLPRSQQGHDVIWVVVDRLTKTAHFLPIKSIDSADQLANVYLKEIVRLHGVPSAIV 593

Query: 56   SDRDPRFVSRFWKSLH 9
            SDRDP+F S FWK LH
Sbjct: 594  SDRDPKFTSHFWKKLH 609


>gb|KYP50860.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 558

 Score =  266 bits (681), Expect = 1e-82
 Identities = 125/211 (59%), Positives = 155/211 (73%)
 Frame = -3

Query: 638 VKPELLTEILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKI 459
           V  ELL EI  +Q  D      ++ + Q    +F LG D +LRF++R+C+P D  L+R I
Sbjct: 330 VTSELLREIGEAQLVDSFLVARRDAIGQGVGGEFTLGVDGVLRFKDRVCVPSDPTLRRLI 389

Query: 458 LSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQ 279
           L E H SK + HPG  KMYQDL++ FWW  MK  +AEFV+ CL CQ+ K EHQ+PSGLLQ
Sbjct: 390 LEEGHRSKLSFHPGATKMYQDLRKIFWWPRMKKDIAEFVSACLVCQKAKIEHQKPSGLLQ 449

Query: 278 PLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYI 99
           PL+IPEWKW+ I+MDFV  LP+TR GHD+IWV+VDRLTKSAHFLPI    SL+RLA +YI
Sbjct: 450 PLSIPEWKWDNISMDFVVALPRTRRGHDSIWVIVDRLTKSAHFLPINIRYSLERLAGLYI 509

Query: 98  REIIRLHGVPEDIVSDRDPRFVSRFWKSLHE 6
            EI+RLHG+P  IVSDRDPRF SRFW+SL +
Sbjct: 510 DEIVRLHGIPSSIVSDRDPRFTSRFWESLQQ 540


>emb|CAA73042.1| polyprotein, partial [Ananas comosus]
          Length = 871

 Score =  273 bits (698), Expect = 2e-82
 Identities = 137/261 (52%), Positives = 180/261 (68%), Gaps = 9/261 (3%)
 Frame = -3

Query: 761  DALSRKTY--VARLMIREWKSLEELSYWNPKKVGIQLLCAN-------LSVKPELLTEIL 609
            DALSRK+   +A  ++ + + +E++     K++ ++++  +       L V+P LL  I 
Sbjct: 423  DALSRKSMENLAMHVVTQPRLIEQM-----KRLELEIVTPDTPMRLMTLVVQPTLLDRIK 477

Query: 608  LSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYT 429
              Q  D +  + K KM+     DF L  D ++RFR RIC+P D  +K  IL EAH + Y 
Sbjct: 478  EKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPYA 537

Query: 428  IHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWE 249
            IHPGG KMY+DLK  +WW  +K  V EFVAKCLTCQ+VKAEH+ P+G LQ L IP WKWE
Sbjct: 538  IHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWE 597

Query: 248  KITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVP 69
            KITMDFVT LP+++ GHDAIWV+VDRLTKSAHF+PI  T + +RLAQ+Y+ EI+RLHGVP
Sbjct: 598  KITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRLHGVP 657

Query: 68   EDIVSDRDPRFVSRFWKSLHE 6
              IVSDRD RFVS FW+SL +
Sbjct: 658  TSIVSDRDTRFVSHFWRSLQD 678


>gb|KYP31581.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 539

 Score =  265 bits (677), Expect = 3e-82
 Identities = 127/210 (60%), Positives = 157/210 (74%), Gaps = 1/210 (0%)
 Frame = -3

Query: 638 VKPELLTEILLSQQKDHKFGEFKNKMIQRG-KSDFKLGDDSILRFRNRICIPHDEDLKRK 462
           V  ELL EI  +Q  D  F   +++ I +G   +F LG D +LRF++R+C+P D  L+R 
Sbjct: 46  VTSELLKEIGEAQLVD-SFLVARHEAIGQGIGGEFTLGVDGVLRFKDRVCVPSDPTLRRL 104

Query: 461 ILSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLL 282
           IL E H SK + HPG  KMYQDL++ FWW  MK  +AEFV+ CL CQ+ K EHQ+PSGLL
Sbjct: 105 ILEEGHRSKLSFHPGATKMYQDLRKIFWWPRMKKDIAEFVSACLVCQKAKIEHQKPSGLL 164

Query: 281 QPLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIY 102
           QPL+IPEWKW+ I+MDFV  LP+TR GHD+IWV+VDRLTKSAHFLPI    SL+RLA +Y
Sbjct: 165 QPLSIPEWKWDSISMDFVVALPRTRRGHDSIWVIVDRLTKSAHFLPINIRYSLERLAGLY 224

Query: 101 IREIIRLHGVPEDIVSDRDPRFVSRFWKSL 12
           I EI+RLHG+P  IVSDRDPRF SRFW+SL
Sbjct: 225 IDEIVRLHGIPSSIVSDRDPRFTSRFWESL 254


>gb|KYP52342.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 252

 Score =  255 bits (652), Expect = 4e-82
 Identities = 115/214 (53%), Positives = 152/214 (71%)
 Frame = -3

Query: 650 ANLSVKPELLTEILLSQQKDHKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDL 471
           +++ VK E L ++   Q  D    +    +       F+L  D ILRF+ RIC+PHD +L
Sbjct: 39  SSMMVKDEFLRQVGQKQLHDVGLVKLLGLLGIEKAVGFELRRDGILRFKGRICLPHDVEL 98

Query: 470 KRKILSEAHHSKYTIHPGGKKMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPS 291
           KR +L E H ++ +IHPG  KMYQDLK+ FWW  MK ++AE+VA CLTCQ+ K EHQ+PS
Sbjct: 99  KRAVLEEGHKNRLSIHPGMTKMYQDLKKTFWWSGMKREIAEYVAACLTCQKAKVEHQKPS 158

Query: 290 GLLQPLAIPEWKWEKITMDFVTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLA 111
           GL+Q + + EWKW+ ITMDF+  LP++    DAIWV+VDRLTK AHFLP+    SL++L 
Sbjct: 159 GLMQQMEVSEWKWDSITMDFIVGLPRSTRNSDAIWVIVDRLTKCAHFLPVNIKWSLEKLT 218

Query: 110 QIYIREIIRLHGVPEDIVSDRDPRFVSRFWKSLH 9
           Q+Y+REI+RLHGVP  I+SDRDPRF SRFW+SLH
Sbjct: 219 QLYVREIVRLHGVPSSIISDRDPRFTSRFWQSLH 252


>gb|KYP36025.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 710

 Score =  268 bits (686), Expect = 7e-82
 Identities = 125/255 (49%), Positives = 175/255 (68%), Gaps = 3/255 (1%)
 Frame = -3

Query: 761  DALSRK-TYVARLMIREWKSLEELSYWN--PKKVGIQLLCANLSVKPELLTEILLSQQKD 591
            DALSRK  ++  +M+RE + +EE    N   +     + C  +++  E L ++ L Q +D
Sbjct: 377  DALSRKFIHMLSMMLRELELVEEFRDLNLCVELAQDHISCGAVTITNEFLRQVGLKQLQD 436

Query: 590  HKFGEFKNKMIQRGKSDFKLGDDSILRFRNRICIPHDEDLKRKILSEAHHSKYTIHPGGK 411
             +       +     + F+LG+D ILRFR RIC+P D + ++ +L E H S+ +IHPG  
Sbjct: 437  KELVRLLGLLGTEKAAGFELGEDGILRFRGRICLPQDAEPRKDVLEEGHKSRLSIHPGMT 496

Query: 410  KMYQDLKRHFWWVNMKNQVAEFVAKCLTCQRVKAEHQRPSGLLQPLAIPEWKWEKITMDF 231
            KMYQDL+++FWW  MK ++ E+V  CLTCQ+ K EHQ+PSGL+Q + IPEWKW+ ITMDF
Sbjct: 497  KMYQDLRKNFWWSGMKRKITEYVEACLTCQKAKVEHQKPSGLMQQIEIPEWKWDSITMDF 556

Query: 230  VTDLPKTRNGHDAIWVVVDRLTKSAHFLPIRKTDSLQRLAQIYIREIIRLHGVPEDIVSD 51
            V  LP++    DAIWV+VDRLTK AHFLP+    SL++L Q+Y++EI+RLHGVP  I+SD
Sbjct: 557  VVGLPRSARNSDAIWVIVDRLTKCAHFLPVNIKWSLEKLTQLYVKEIVRLHGVPSSIISD 616

Query: 50   RDPRFVSRFWKSLHE 6
            RDPRF SRFW+SLH+
Sbjct: 617  RDPRFTSRFWQSLHQ 631