BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00026987
         (1024 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   420   e-133
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   412   e-130
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   409   e-129
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    405   e-127
gb|KYP59969.1| Retrovirus-related Pol polyprotein from transposo...   343   e-114
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]   359   e-111
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         360   e-110
gb|KYP54197.1| Retrovirus-related Pol polyprotein from transposo...   337   e-109
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]   347   e-108
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]      350   e-107
gb|KYP42945.1| Retrovirus-related Pol polyprotein from transposo...   330   e-107
gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposo...   336   e-106
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]   347   e-106
gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposo...   337   e-104
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           342   e-104
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   342   e-104
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...   339   e-103
gb|KYP45754.1| Retrovirus-related Pol polyprotein from transposo...   316   e-102
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo...   327   e-101
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...   333   e-101

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  420 bits (1079), Expect = e-133
 Identities = 206/334 (61%), Positives = 246/334 (73%), Gaps = 15/334 (4%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXLVHS 845
            +R+GHMSEKGL  L KK LI+  K   + PC++CLFGKQ                 LV+S
Sbjct: 427  KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 486

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP+E+ES+GGNKYF+TFIDD SRKLWVY LKTKDQVF+ F+ FH +VERETG KLK 
Sbjct: 487  DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 546

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            LRSDNGGEYTS+ F+ YC ++GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML MAKLP
Sbjct: 547  LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 606

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            K FWGEAV+ ACYLINRSPSVPL FE+PE++W+ K+ SYSHL+VFGC A+AHV KE R K
Sbjct: 607  KSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTK 666

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHES--KTIEDIEK--------- 158
            LD ++ PCIFIGYGDEEFGYRLWDP +KKVIRSRDVVF ES  +T  D+ +         
Sbjct: 667  LDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPN 726

Query: 157  ----PTMSQKSNIGAQISDAAPEPFVRDGDVVPE 68
                P+ S         +D   E   + G+V+ +
Sbjct: 727  FVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQ 760


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  412 bits (1059), Expect = e-130
 Identities = 198/322 (61%), Positives = 232/322 (72%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXLVHS 845
            +RLGHMSEKGL  L KK LI   K  +LD C++CLFGKQ                 LVHS
Sbjct: 428  KRLGHMSEKGLQVLAKKSLIPFAKGTSLDSCDYCLFGKQHKVSFTRTFTRKENVLDLVHS 487

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP+EVES+G NKYF+T+IDD SRK+WVY LKTKDQVF+ FK FH MVERETG  LKC
Sbjct: 488  DVCGPMEVESVGHNKYFVTYIDDASRKVWVYLLKTKDQVFQTFKEFHAMVERETGRTLKC 547

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +RSDNGGEYTS  F  YC  +GI+H KT+P TPQHNGVAERMNRTI+E+VRSML  A L 
Sbjct: 548  IRSDNGGEYTSNEFRDYCSKHGIKHVKTIPGTPQHNGVAERMNRTILEKVRSMLKTANLT 607

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            K FWGEA+  ACYLINR+P VPL  E PE +W+G+  SYSHLRVFGC A+AHV KE R K
Sbjct: 608  KKFWGEAMTTACYLINRTPCVPLGLETPEGVWTGRSASYSHLRVFGCKAFAHVPKEQRSK 667

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LD +  PCIF+GYG+EE GYRLW+PK KK+ RSRDVVFHE +TI D +K  +     +  
Sbjct: 668  LDDKAMPCIFLGYGNEEMGYRLWNPKTKKLFRSRDVVFHEGQTIADFDKNEVEHADQLTY 727

Query: 124  QISDAAPEPFVRDGDVVPEDIP 59
              S    EP  +  D+V ED+P
Sbjct: 728  DSSPLQEEPSDKAQDMVNEDVP 749


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  409 bits (1051), Expect = e-129
 Identities = 190/314 (60%), Positives = 233/314 (74%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXLVHS 845
            +RL H+SEKGL  L K+ LI   K   L+PC++C+FGK                  LVHS
Sbjct: 420  RRLAHISEKGLQLLAKQSLIPQAKGDFLNPCDYCVFGKHHRVSFKKSSNRKKNKLELVHS 479

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP+EVESLGGNKYF+TFIDD SRK WVY L+ K QVF+ F+ FH MVERETG +LKC
Sbjct: 480  DVCGPMEVESLGGNKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFHAMVERETGKQLKC 539

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +R+DNGGEY SK F  YC  YGIRHEKTVP TPQHNG+AERMNRTI+E+VR ML MAKLP
Sbjct: 540  IRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIAERMNRTIVEKVRCMLRMAKLP 599

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            KPFWGEAV+ A YLINR PSVPL F++PE++W+GK+ SYSHL+VFGC A+ HV KE R K
Sbjct: 600  KPFWGEAVQTAVYLINRLPSVPLGFDIPERVWAGKEVSYSHLKVFGCKAFMHVPKEQRSK 659

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LD +  PC+F+GYG+EEFGY+LWDP+ K+++RSRDV+FHE +TIED++    ++    G 
Sbjct: 660  LDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIFHEHETIEDLKGGEAAKPMEDGV 719

Query: 124  QISDAAPEPFVRDG 83
              +   P     DG
Sbjct: 720  NPTSHVPSECATDG 733


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  405 bits (1040), Expect = e-127
 Identities = 192/297 (64%), Positives = 228/297 (76%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXLVHS 845
            +R+GH SEKGL  L KK LI+  K   + PCN+ LFGKQ                 LV+S
Sbjct: 428  KRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSSERKSNILDLVYS 487

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP+E+ES+GGNKYF+TFIDD SRKLWVY  + KDQVF+ F+ FH +VERETG K K 
Sbjct: 488  DVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFHALVERETGRKRKR 547

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            LR+DNGGEYTS+ F+ YC  +GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML MAKLP
Sbjct: 548  LRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 607

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            K FWGEAVR ACYLINRSPSVPL F++PE++W+ K+ SYSHL+VFGC A+AHV KE R K
Sbjct: 608  KTFWGEAVRTACYLINRSPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPKEQRTK 667

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSN 134
            LD ++ PCIFIGYGDEEFGYRLWD  +KKVIRSRDV+F ES+     +    ++K N
Sbjct: 668  LDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSRDVIFRESEVGTAADLSEKAKKKN 724


>gb|KYP59969.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 345

 Score =  343 bits (879), Expect = e-114
 Identities = 169/289 (58%), Positives = 212/289 (73%), Gaps = 1/289 (0%)
 Frame = -1

Query: 1021 RLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHS 845
            RL H+SEKGL+ L KK+++   K A L+ C+HC+ GKQ +                LVHS
Sbjct: 1    RLSHISEKGLNCLAKKDVLQGLKSAELEKCSHCMAGKQTRVSFKKHPPSRKSELLQLVHS 60

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGPL+V+S  G  YF+TFIDD SRKLWVY L+ KDQV E FK FH +VER++G KLK 
Sbjct: 61   DVCGPLKVKSFSGALYFVTFIDDCSRKLWVYALQRKDQVLERFKQFHALVERQSGKKLKP 120

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +R+DN GEY    FD YCK +GI HEKT P+TPQ NG+A RMNRT++ERVR MLS AKL 
Sbjct: 121  IRTDNDGEYCGP-FDVYCKQHGIAHEKTPPKTPQLNGLAARMNRTLLERVRCMLSDAKLH 179

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            K FWGE +  A ++IN +P+V LN EVP+K+W GK+ SY HLRVFGC A+ H+ ++ R K
Sbjct: 180  KHFWGETLYTAVHVINLTPTVILNSEVPDKIWFGKNESYDHLRVFGCKAFVHIPRDERSK 239

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK 158
            LDA+T  CIFIGYG++EFGYR +DP EKK++RSRDV F E +TIEDI+K
Sbjct: 240  LDAKTRQCIFIGYGEDEFGYRFYDPVEKKLVRSRDVQFMEDQTIEDIDK 288


>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score =  359 bits (922), Expect = e-111
 Identities = 172/309 (55%), Positives = 226/309 (73%), Gaps = 1/309 (0%)
 Frame = -1

Query: 1021 RLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHS 845
            RLGHMSEKGL  L KK L++  K+ +L  C HCL GKQ +                LV+S
Sbjct: 308  RLGHMSEKGLMILAKKNLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRYTRKPGMLDLVYS 367

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G KLKC
Sbjct: 368  DVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKC 427

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +R+DNGGEY+S  FD YC+ +GIRH+KT P+TPQ NG+AERMNRT++ERVR +LS ++LP
Sbjct: 428  IRTDNGGEYSSP-FDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLLSQSQLP 486

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            + FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+ K+ R K
Sbjct: 487  RSFWGEALNTVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCKAFVHIPKDERSK 546

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LDA+T PC+FIGYG +E GYR +DP +KK++RSRDVVF E  TI+DIEK T   +S    
Sbjct: 547  LDAKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEK-TNPMESQHSG 605

Query: 124  QISDAAPEP 98
             + D  P P
Sbjct: 606  DLIDLDPAP 614


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  360 bits (924), Expect = e-110
 Identities = 181/323 (56%), Positives = 223/323 (69%), Gaps = 2/323 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL-VH 848
            +RLGHMS KG+  L KK  ++  KEA LD C HCL GKQ+                  +H
Sbjct: 422  KRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCLAGKQRRVSFMSHPPTRKSEPLDLIH 481

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGP++V SLGG  YF+TFIDD SRKLWVY LK K  V   FK FH +VER+TG KLK
Sbjct: 482  SDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLK 541

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
            C+R+DNGGEY    FD YC+ YGIRH+KT P+ PQ NG+AERMNRTIMERVR ML  AKL
Sbjct: 542  CIRTDNGGEYCGP-FDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKL 600

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            P  FW EAV  A ++IN SP + L  EVP+K+W GKD SY HLRVFGC A+ HV ++ R 
Sbjct: 601  PSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERS 660

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIG 128
            KLD++T  CIFIGYG +EFGYRL+DP EKK++RSRDVVF E++TIEDI+K    +  + G
Sbjct: 661  KLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSG 720

Query: 127  AQIS-DAAPEPFVRDGDVVPEDI 62
            + +  +     +  D D V E++
Sbjct: 721  SLVDIEPVSRRYTDDVDEVQENV 743


>gb|KYP54197.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 512

 Score =  337 bits (864), Expect = e-109
 Identities = 167/290 (57%), Positives = 209/290 (72%), Gaps = 1/290 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL-VH 848
            +RL H+SEKGL+ L KK+++   K A L+ C+HC+ GKQ                   VH
Sbjct: 80   RRLSHISEKGLNCLAKKDVLQGLKSAELEKCSHCMAGKQTIVSFKKHLPSRKSELLQLVH 139

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGPL+V+S  G  YF+TFIDD SRKLWVY L+ KDQV E FK FH +VER++G KLK
Sbjct: 140  SDVCGPLKVKSFSGALYFVTFIDDCSRKLWVYALQRKDQVLERFKQFHALVERQSGKKLK 199

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
             +R+DNG EY    FD YCK +GI HEKT P+TPQ NG+ ERMNRT++ERVR MLS AKL
Sbjct: 200  HIRTDNGSEYCGP-FDVYCKQHGIAHEKTPPKTPQLNGLVERMNRTLLERVRYMLSDAKL 258

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK F GEA+    ++IN +P+V LN EVPEK+W GK+ SY HLRVF C A+ H+ ++ R 
Sbjct: 259  PKHFLGEALYTVVHVINLTPTVILNSEVPEKIWFGKNASYDHLRVFVCKAFVHIPRDERS 318

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK 158
            KLDA+T  CI IGYG++EFGYR +DP EKK++RSRDV F E +TIEDI+K
Sbjct: 319  KLDAKTRQCILIGYGEDEFGYRFYDPVEKKLVRSRDVQFMEDQTIEDIDK 368


>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
          Length = 1017

 Score =  347 bits (891), Expect = e-108
 Identities = 167/308 (54%), Positives = 221/308 (71%), Gaps = 2/308 (0%)
 Frame = -1

Query: 1021 RLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHS 845
            RL HMSEKGL  + KK L++  K+ +L  C HCL GKQ +                LV+S
Sbjct: 179  RLSHMSEKGLMIMAKKNLLSGMKKGSLKRCAHCLGGKQTRVAFKTLHHTRKPGMLDLVYS 238

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G KLKC
Sbjct: 239  DVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKC 298

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            ++ DNGGEY+S  FD YC+ +GIRH+KT P+TPQ NG+AE MNRT++ERVR +LS ++LP
Sbjct: 299  IQIDNGGEYSSP-FDEYCRQHGIRHQKTPPKTPQLNGLAESMNRTLVERVRCLLSQSQLP 357

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            + FWGEA+    +L+N +P VPL F+VP+++WS  +  Y HLRVFGC A+ H+ K+   K
Sbjct: 358  RSFWGEALNTVVHLLNLTPCVPLEFDVPDRIWSNNEICYDHLRVFGCKAFVHIPKDEISK 417

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LDA+T PC+FIGYG +E GYR +DP +KK++RSRDVVF E  TI+DIEK    +  + G 
Sbjct: 418  LDAKTRPCVFIGYGHDELGYRFYDPMQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGD 477

Query: 124  QIS-DAAP 104
             I  D AP
Sbjct: 478  LIDLDLAP 485


>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
          Length = 1339

 Score =  350 bits (897), Expect = e-107
 Identities = 170/317 (53%), Positives = 219/317 (69%), Gaps = 6/317 (1%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL-VH 848
            +RLGHMSEKGLS L KK +++   +A L  C+HCL GKQ+                  VH
Sbjct: 431  KRLGHMSEKGLSILAKKNVLHGVSDAKLRKCSHCLAGKQRRVSFKSSEPKRKSEVLDLVH 490

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGP++  SLGG  YF+TFIDD SRK W Y LKTKDQV + FK F   VERETG KLK
Sbjct: 491  SDVCGPMKTRSLGGAYYFVTFIDDYSRKTWAYTLKTKDQVLDTFKSFQASVERETGKKLK 550

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
            C+R++NGGEY    FD YC+  GIRH+K+ P+TPQ NG+AERMNRT++ER+R +LS + L
Sbjct: 551  CIRTNNGGEYVGP-FDKYCQDQGIRHQKSPPKTPQLNGLAERMNRTLVERMRCLLSQSML 609

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FWGEA+    +L+N +P VPL F+VP  +W+GK+ SY HLRVFGC+AY H+ K+ R 
Sbjct: 610  PKYFWGEALNTVVHLLNLTPCVPLKFDVPNHVWNGKEVSYDHLRVFGCMAYVHIPKDERS 669

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK-----PTMSQ 143
            KLD ++  C+F+GYG +EFGYR +DP ++K+IRSRDVVF E  TIEDI+K     PT   
Sbjct: 670  KLDEKSKKCVFVGYGLDEFGYRFFDPVQRKLIRSRDVVFMEDYTIEDIDKVENKDPTFED 729

Query: 142  KSNIGAQISDAAPEPFV 92
            +  +    +  AP P +
Sbjct: 730  EEIVDIGSTTIAPTPII 746


>gb|KYP42945.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 497

 Score =  330 bits (847), Expect = e-107
 Identities = 162/286 (56%), Positives = 207/286 (72%), Gaps = 1/286 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVH 848
            +RL H+SE GL+ L KK+++   K   L+ C++C+ GKQ +                LVH
Sbjct: 211  RRLSHISENGLNCLAKKDVLQGLKSVELEKCSYCMAGKQTRVFFKKHPPSRKLELLKLVH 270

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGPL+V++  G  YF+TFIDD SRKLWVY L  KDQV E FK FH +VER++G KLK
Sbjct: 271  SDVCGPLKVKAFSGALYFVTFIDDCSRKLWVYALSRKDQVLEGFKQFHALVERQSGKKLK 330

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
             +R+DNGGEY    FD YCK +GI H+KT P+TPQ NG+AERMNRT++ERVR MLS AKL
Sbjct: 331  RIRTDNGGEYCGP-FDVYCKKHGIAHKKTPPKTPQLNGLAERMNRTLLERVRCMLSDAKL 389

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FWGEA+    ++IN +P+V LN EVPEK+W GK+ SY HLRVFGC A+ H+ ++ R 
Sbjct: 390  PKHFWGEALYTVVHVINLTPTVILNSEVPEKIWFGKNASYDHLRVFGCKAFVHIPRDERS 449

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIE 170
            KLD +T  CIFIGYG++EF YR +DP EKK++RSRDV F E +TI+
Sbjct: 450  KLDTKTRQCIFIGYGEDEFVYRFYDPVEKKLVRSRDVQFMEDQTIK 495


>gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 728

 Score =  336 bits (862), Expect = e-106
 Identities = 164/290 (56%), Positives = 209/290 (72%), Gaps = 1/290 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVH 848
            ++L H+SEKGL+ L K +++   K A L+ C+HC+ GKQ +                LVH
Sbjct: 396  RKLSHISEKGLNCLAKNDVLQGLKSAELEKCSHCMAGKQTRVSFKKHPPSRKSELLPLVH 455

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
             DVCGPL+ +S  G  YF+TFIDD SRKLWVY  + KDQV E FK FH +VER++G KLK
Sbjct: 456  PDVCGPLKEKSFSGALYFVTFIDDCSRKLWVYVFQRKDQVLERFKQFHALVERQSGKKLK 515

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
             + +DNGGEY    FD YCK +GI HEKT P+TPQ NG+ ERMNRT++E VR MLS AKL
Sbjct: 516  HIHTDNGGEYCGP-FDVYCKQHGIAHEKTPPKTPQLNGLVERMNRTLLETVRCMLSDAKL 574

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FWGEA+  A ++IN +P+V LN EVP+K+W GK+ SY HLRVFGC A+ H+ ++ R 
Sbjct: 575  PKHFWGEALYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPRDERS 634

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK 158
            KLDA+T  CIFIGY ++EFGYR +DP EKK++RSRDV F E +TIEDI+K
Sbjct: 635  KLDAKTRQCIFIGYDEDEFGYRFYDPVEKKLVRSRDVQFMEDQTIEDIDK 684


>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
          Length = 1317

 Score =  347 bits (889), Expect = e-106
 Identities = 167/308 (54%), Positives = 220/308 (71%), Gaps = 2/308 (0%)
 Frame = -1

Query: 1021 RLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHS 845
            RLGHMSEKGL  L K  L++  K+ +L  C HCL GKQ +                LV+S
Sbjct: 376  RLGHMSEKGLMILAKNNLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRHTRKPGMFDLVYS 435

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DVCGP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G KLKC
Sbjct: 436  DVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKC 495

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +R+DNGGEY S  FD YC+ + IRH+KT P+TPQ NG+AERMNRT++ERVR +LS ++LP
Sbjct: 496  IRTDNGGEY-SGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLP 554

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            + FW EA+    +++N +P VPL F+V +++WS  + SY HLRVFGC A+ H+ K+ R K
Sbjct: 555  RSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSK 614

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LD +T PC+FIGYG +E GYR +DP +KK++RSRDVVF E  TI+DIEK    +  + G 
Sbjct: 615  LDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMESQHSGD 674

Query: 124  QIS-DAAP 104
             I  D AP
Sbjct: 675  LIDLDLAP 682


>gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 990

 Score =  337 bits (865), Expect = e-104
 Identities = 168/290 (57%), Positives = 213/290 (73%), Gaps = 1/290 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVH 848
            +RL H+SEKGL+ L KK+++   K A L+ C+HC+ GKQ +                LVH
Sbjct: 337  RRLSHISEKGLNCLAKKDVLQGLKIAELEKCSHCMAGKQTRVSFKKHPPSRKSKLLQLVH 396

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGPL+V+S  G  YF+TFIDD S+KLWVY L+ KD V E FK FH +VER++G KLK
Sbjct: 397  SDVCGPLKVKSFSGALYFVTFIDDCSKKLWVYALQRKD-VLERFKQFHALVERQSGKKLK 455

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
             +R+DNGGEY    FD YCK +GI HEKT P+TPQ N +AERMN T++ERVR MLS AKL
Sbjct: 456  RIRTDNGGEYCGP-FDVYCKQHGIAHEKTPPKTPQLNDLAERMNMTLLERVRCMLSDAKL 514

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FWGEA+  A ++IN +P+V LN EVP+K+W GK+ SY HLRVFGC A+ H+ ++ R 
Sbjct: 515  PKHFWGEALYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPRDERS 574

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK 158
            KLD +T  CIFIGYG++EFGYR +DP EKK++RSRDV F E +TIEDI+K
Sbjct: 575  KLDTKTRQCIFIGYGEDEFGYRFYDPIEKKLVRSRDVQFMEDQTIEDIDK 624


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  342 bits (878), Expect = e-104
 Identities = 169/290 (58%), Positives = 210/290 (72%), Gaps = 1/290 (0%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVH 848
            +RLGHMSEK ++ L+KK  +    +  L  C  CL GKQ +                LVH
Sbjct: 425  RRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVH 484

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDVCGP + +SLGG +YF+TFIDD SRK WVY LKTKDQVF+ FK F  +VERETG KLK
Sbjct: 485  SDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGKKLK 543

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
            C+R+DNGGEY  + FDAYCK +GIRH+ T P+TPQ NG+AERMNRT++ER R +LS +KL
Sbjct: 544  CIRTDNGGEYQGQ-FDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLSHSKL 602

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FWGEA+  A Y++N SP VPL ++ PEK+W G+D SY  LRVFGC AY HV K+ R 
Sbjct: 603  PKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVPKDERS 662

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEK 158
            KLD +T  C+FIGYG +  GY+ +DP EKK++RSRDVVF E +TIEDI+K
Sbjct: 663  KLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDK 712


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  342 bits (877), Expect = e-104
 Identities = 166/309 (53%), Positives = 219/309 (70%), Gaps = 1/309 (0%)
 Frame = -1

Query: 1021 RLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHS 845
            +LGHMSEKGL  L KK L+   K+ +L  C HCL GKQ +                LV+S
Sbjct: 405  KLGHMSEKGLMILAKKNLLXGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPGMLDLVYS 464

Query: 844  DVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKC 665
            DV GP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G KLKC
Sbjct: 465  DVYGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKC 524

Query: 664  LRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLP 485
            +R+DNGGEY S  FD YC+ +G RH+KT P+TPQ NG+AERMNRT++ERVR +LS ++LP
Sbjct: 525  IRTDNGGEY-SGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLP 583

Query: 484  KPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQK 305
            + FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+ K+ R K
Sbjct: 584  RSFWGEALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSK 643

Query: 304  LDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIGA 125
            LDA+T PC+FIGYG +E GY+ +D  +KK+ RS DVVF E  TI+DIEK T   +S    
Sbjct: 644  LDAKTRPCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEK-TNPMESQHSG 702

Query: 124  QISDAAPEP 98
             + D  P P
Sbjct: 703  DLIDLDPAP 711


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  339 bits (870), Expect = e-103
 Identities = 178/322 (55%), Positives = 216/322 (67%), Gaps = 13/322 (4%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL--V 851
            +RLGHMSEKGL  L K  L N+ K   L+ C  CL GKQ                 L  V
Sbjct: 421  RRLGHMSEKGLEILAKDHLPNI-KGQPLESCEDCLAGKQHRVSFRRPDDARRRKHILDLV 479

Query: 850  HSDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKL 671
            HSDVC   E  S+GG +YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER TG KL
Sbjct: 480  HSDVCSTSE-RSIGGAQYFVTFIDDHSRKVWVYPLKTKDQVLQAFKEFHALVERATGRKL 538

Query: 670  KCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAK 491
            KC+R+DNGGEY    F+ YCKT+GIRHEK  P+TPQ NGVAERMNRTI E+VRSMLS AK
Sbjct: 539  KCIRTDNGGEYLGP-FEYYCKTHGIRHEKVPPKTPQMNGVAERMNRTIAEKVRSMLSHAK 597

Query: 490  LPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELR 311
            +PK FWGEAV  A  LIN SPS PLN E+PE++WSGK   Y HL+VFGC A+ H+ K+ R
Sbjct: 598  IPKSFWGEAVLTAADLINLSPSRPLNGEIPEEVWSGKKAYYGHLKVFGCRAFVHIPKDER 657

Query: 310  QKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQK--- 140
             KLDA+   CI++    +E G+RLWDP  KK++RSRDV+F E +TI+DI+KP   ++   
Sbjct: 658  TKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFFEDQTIQDIKKPEKPKQKEV 717

Query: 139  --------SNIGAQISDAAPEP 98
                    +N G +IS    EP
Sbjct: 718  QDSSPIVINNSGGEISQRIDEP 739


>gb|KYP45754.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 427

 Score =  316 bits (809), Expect = e-102
 Identities = 154/263 (58%), Positives = 193/263 (73%), Gaps = 1/263 (0%)
 Frame = -1

Query: 943 LDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXLVHSDVCGPLEVESLGGNKYFLTFIDDVSR 767
           L+ C+HC+ GKQ +                LVHSDVCGPL+V+S  G  YF+TFIDD SR
Sbjct: 157 LEKCSHCMAGKQTRVSFKKHPPSRKLELLNLVHSDVCGPLKVKSFSGVLYFVTFIDDCSR 216

Query: 766 KLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHE 587
           KLWVY L+ KDQV E FK FH +VER++G KLK + +DNGGEY    FD YCK +GI HE
Sbjct: 217 KLWVYALQRKDQVLERFKQFHALVERQSGKKLKHIHTDNGGEYCGP-FDVYCKQHGIAHE 275

Query: 586 KTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFE 407
           KT  +TPQ NG+AERMN+T++ERVR MLS AKLPK FWGEA+    ++IN +P+V LN E
Sbjct: 276 KTPLKTPQLNGLAERMNKTLLERVRCMLSDAKLPKHFWGEALYTTVHVINLTPTVILNSE 335

Query: 406 VPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPK 227
           VP+K+W GK+ SY HLRVF C A+ H+ ++ R KLDA+T  CIFIGYG++EFGY  +DP 
Sbjct: 336 VPDKIWFGKNASYDHLRVFSCKAFVHIPRDERSKLDAKTRQCIFIGYGEDEFGYMFYDPV 395

Query: 226 EKKVIRSRDVVFHESKTIEDIEK 158
           EKK++RSRDV F E +TIEDI+K
Sbjct: 396 EKKIVRSRDVQFMEVQTIEDIDK 418


>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 864

 Score =  327 bits (837), Expect = e-101
 Identities = 164/321 (51%), Positives = 207/321 (64%), Gaps = 4/321 (1%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL-VH 848
            QRLGHMSEKG+  +  K  +   +   ++ C  C+FGKQ+                  VH
Sbjct: 393  QRLGHMSEKGMKIMHSKGKLPGLQSMEIEMCEDCIFGKQKRVSFQKGGRTPKKERLELVH 452

Query: 847  SDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLK 668
            SDV GP  V S+ G +YF+TFIDD SRK+WVYFLK K +VFE FK++  MVE ETG K+K
Sbjct: 453  SDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIK 512

Query: 667  CLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKL 488
             LR+DNGGEY    F  +C  +GIR E+TVP TPQ NGVAERMNRT+ ER RSM   + L
Sbjct: 513  KLRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRVQSGL 572

Query: 487  PKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQ 308
            PK FW E V  A YLINR PSVPL  ++PE++WSGK+   SHLRVFGC+AY H+S + R 
Sbjct: 573  PKQFWAETVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRN 632

Query: 307  KLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDIEKPTMSQKSNIG 128
            KLD ++  C FIGYG++EFGYRLWD + KK+IRSRDV+F+E    +D +  + S    I 
Sbjct: 633  KLDPKSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIFNEGVMYKDKQNTSASNSKPIE 692

Query: 127  ---AQISDAAPEPFVRDGDVV 74
                ++ DA   P V     V
Sbjct: 693  PTYVEVDDALESPPVESSQSV 713


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  333 bits (855), Expect = e-101
 Identities = 168/303 (55%), Positives = 216/303 (71%), Gaps = 5/303 (1%)
 Frame = -1

Query: 1024 QRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXXL--V 851
            +RLGH+SEKGL  L +K+L++  K  +LDPC HCL GKQ                 L  V
Sbjct: 410  KRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQRSSPPVRRKNILDLV 469

Query: 850  HSDVCGPLEVESLGGNKYFLTFIDDVSRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKL 671
            H+DVC   E +S+GG  YF+TFIDD SRK+W++ LK+KDQV + FK FH +VERETG K+
Sbjct: 470  HTDVCSMSE-KSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERETGRKI 528

Query: 670  KCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAK 491
            KC+RSDNGGEY    F+ YCK +GIR EKT P+TPQ NG+AERMNRTI ERVR +LS AK
Sbjct: 529  KCVRSDNGGEYRGP-FETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCVLSHAK 587

Query: 490  LPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELR 311
            LPK FWGEA+     ++N +PSVPL   +P+++W+GK  SY+HL+VFGC A+ H+ K+ R
Sbjct: 588  LPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVFGCRAFVHIPKDER 647

Query: 310  QKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTIEDI---EKPTMSQK 140
             KLDA+T  CI++    +EFGYRLWDP  KKV+RSRDVVF E +TIEDI   EKP + + 
Sbjct: 648  AKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKPRLRKS 707

Query: 139  SNI 131
            + +
Sbjct: 708  TEL 710