BLASTX nr result

ID: Rehmannia30_contig00024254 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00024254
         (629 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_016725950.1| PREDICTED: uncharacterized protein LOC107937...    65   4e-10
gb|PIN08627.1| hypothetical protein CDL12_18785 [Handroanthus im...    59   1e-07

>ref|XP_016725950.1| PREDICTED: uncharacterized protein LOC107937561 [Gossypium
           hirsutum]
          Length = 117

 Score = 65.1 bits (157), Expect = 4e-10
 Identities = 42/95 (44%), Positives = 47/95 (49%)
 Frame = +3

Query: 75  FLLKFMVGLPKGFLQSLLAFCPPPAPMGXXXXXXXXXXXXXXXXXXXXXXNFHPSKIM*F 254
           FL+ F  GL KGFLQSLLAFCPPP                            H  K   F
Sbjct: 11  FLVCFHGGLAKGFLQSLLAFCPPP----------------------------HHGKSPYF 42

Query: 255 FYFCYRGGGHTAN*ALLASLCETLVKFWFSLFSNS 359
               + GGGHTAN ALLASLC+ LV  +F L S+S
Sbjct: 43  SPLVFHGGGHTANWALLASLCKILVMHFFQLSSHS 77


>gb|PIN08627.1| hypothetical protein CDL12_18785 [Handroanthus impetiginosus]
          Length = 132

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 46/133 (34%), Positives = 57/133 (42%)
 Frame = +2

Query: 95  GFTKGFLTEFIGILSTSCAYGIFIYLILSFFXXXXXXXXXXXXXXXXXXXHVIFLFLL*R 274
           GF+KGFL   +           F +L   F+                   HVI+ ++L  
Sbjct: 3   GFSKGFLRSLLAFCPPPPIEIHFSFLFFYFWIKRTRNEKNFDRKN-----HVIWCYIL-W 56

Query: 275 RWAYCQLSSVGFSL*NPREILVFLIXXXXXXXXXXXXXXVCTLCRSRFVLSEFLGNLFIA 454
           RWAYCQ SSVGFSL NPRE                      TL RSRF        LF A
Sbjct: 57  RWAYCQRSSVGFSLRNPRETCT-----SNHALLVLPSLSFSTLFRSRF--------LFNA 103

Query: 455 NYIWQKPRKSRKK 493
           NY W+KP++ R+K
Sbjct: 104 NYKWKKPKRERRK 116


Top