BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00023904
         (1619 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]   587   0.0  
gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   463   e-155
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif...   441   e-142
gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   435   e-140
gb|KYP63409.1| Retrotransposable element Tf2 [Cajanus cajan]          417   e-139
gb|KYP55262.1| Retrotransposable element Tf2, partial [Cajanus c...   417   e-138
gb|PNX84282.1| hypothetical protein L195_g040340 [Trifolium prat...   416   e-137
gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pra...   424   e-136
gb|PNX78431.1| transposon Tf2-1 polyprotein, partial [Trifolium ...   413   e-135
gb|KYP37665.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]   416   e-131
gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   420   e-131
gb|KYP53324.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]   409   e-131
dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifo...   418   e-131
gb|PNX96980.1| retrotransposon-related protein, partial [Trifoli...   419   e-130
emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]   404   e-130
gb|PNY14541.1| hypothetical protein L195_g011223 [Trifolium prat...   407   e-130
gb|KYP66317.1| Retrotransposable element Tf2 [Cajanus cajan]          405   e-130
gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium prat...   408   e-129
gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   420   e-129
gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   422   e-129

>gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1514

 Score =  587 bits (1513), Expect = 0.0
 Identities = 282/418 (67%), Positives = 338/418 (80%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DVK FV +C +CQT+KYST  P GLLQPLE+P+RVWED++LDFIVGLP S+GNTSILVVI
Sbjct: 1065 DVKTFVSQCFVCQTVKYSTTPPNGLLQPLELPERVWEDVALDFIVGLPMSKGNTSILVVI 1124

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR TKYAHFGALPT++TATKVA+LF +M+++LHG+PRTIVSDRDPIFTS+FW++LFK MG
Sbjct: 1125 DRFTKYAHFGALPTHHTATKVAELFTNMIVKLHGIPRTIVSDRDPIFTSRFWQELFKLMG 1184

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+LKMSSSYHPQTDGQTEV NRY+EQYLRAF+AD+PK+W  FLSWAEYHYNTSH SAI M
Sbjct: 1185 TKLKMSSSYHPQTDGQTEVTNRYVEQYLRAFSADYPKKWGRFLSWAEYHYNTSHHSAINM 1244

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PFQAVYGRP PTIP YVRG+S +QAVD +L  R+ +L+ LK+NL  AQ+RM    NKKR
Sbjct: 1245 TPFQAVYGRPPPTIPHYVRGNSKIQAVDGDLLTRDEILQHLKHNLTRAQHRMVQQANKKR 1304

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
             D+QF +GD+VLVKLQPYRQ+TVA RLN+K+ R YFGPFPI+ R G VAY LGLP  S I
Sbjct: 1305 TDVQFAVGDLVLVKLQPYRQATVAVRLNHKIARRYFGPFPILERVGTVAYKLGLPSESRI 1364

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HPTFHVSLL+ FKG    +FYPLPE+S  N+PLL P AI++ R+ ++ G P KQ+LV WS
Sbjct: 1365 HPTFHVSLLRAFKGAVGDKFYPLPEVSVANRPLLHPTAILAGRIVSQQGVPRKQILVQWS 1424

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSNEKWAGVVLDEAQIQDQLKSW 364
            H+  EDATWE+L  F  LY +P+LEDKV+F  G SDS      V LD    Q  +K W
Sbjct: 1425 HNQQEDATWEDLQIFTDLYGVPDLEDKVIFQEGSSDSFSH-KEVPLDTNTTQQLMKEW 1481


>gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 544

 Score =  463 bits (1192), Expect = e-155
 Identities = 221/396 (55%), Positives = 286/396 (72%)
 Frame = -3

Query: 1614 VKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVID 1435
            V+ FV  C++CQ IKY+T  P GLLQPL +P+ VWEDI++DFI GLP S G+T I VV+D
Sbjct: 131  VENFVASCLVCQQIKYATQVPAGLLQPLPIPEAVWEDITMDFITGLPPSHGSTVIFVVVD 190

Query: 1434 RLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMGT 1255
            RLTK AHFGALPT +TA+KVA+LF  +V+R HG PR+IVSDRDP+F S FW+KLF+  GT
Sbjct: 191  RLTKSAHFGALPTAFTASKVAELFVSIVVRHHGFPRSIVSDRDPVFISTFWRKLFELSGT 250

Query: 1254 RLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGMS 1075
            +L MSS+YHPQTDGQ+EV+NR LEQYLRAF    P  W   L WAE+HYNTS+ S++ MS
Sbjct: 251  KLAMSSAYHPQTDGQSEVVNRGLEQYLRAFTQQQPSSWLLLLPWAEFHYNTSYHSSLKMS 310

Query: 1074 PFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKRR 895
            PFQA+YGR  PT+P Y RGS+ +Q +DE L+NR+ LLR LK NLL AQNRM    N  RR
Sbjct: 311  PFQALYGRKPPTVPGYTRGSTSIQTLDEALTNRDELLRQLKQNLLEAQNRMIQKANAHRR 370

Query: 894  DIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWIH 715
            D  F +GD+VLV+LQPYRQS+V    ++KL + Y+GP+ +I R GPVAY L LP  S IH
Sbjct: 371  DFSFAVGDLVLVRLQPYRQSSVRQHKHHKLSKRYYGPYRVIERIGPVAYKLQLPSESRIH 430

Query: 714  PTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWSH 535
            P FH+++LK F+G N      LP  S +N+P+  P AI+  R    HG P +QVL+ W  
Sbjct: 431  PVFHIAVLKPFRGSNNPPLSDLPSESLNNQPVDQPSAILERRTILIHGVPREQVLIQWKG 490

Query: 534  SLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDS 427
            +  ++A+WE+++     Y   +LEDKV+ +G GSD+
Sbjct: 491  APPDEASWEDVDIITACYPNFHLEDKVILEGEGSDT 526


>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
          Length = 893

 Score =  441 bits (1133), Expect = e-142
 Identities = 223/412 (54%), Positives = 281/412 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            ++K+FV +C ICQ  KYST+ P GLLQPL +P  VWEDISLDFI GLP S G + +LVV+
Sbjct: 460  EIKDFVARCFICQQTKYSTSKPSGLLQPLPIPSNVWEDISLDFITGLPLSGGYSVLLVVV 519

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +KY H GALP+++TA KVA+LF +MV +LHG+PR+IVSDRDPIF S+FW  LFKF G
Sbjct: 520  DRFSKYTHLGALPSHFTAYKVAELFVNMVCKLHGMPRSIVSDRDPIFISKFWSDLFKFSG 579

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L+MSSSYHPQTDGQTEV NR +EQYLRAF    P  WH FL WAEYHYNTS+ +A G+
Sbjct: 580  TLLRMSSSYHPQTDGQTEVTNRTIEQYLRAFVHQRPMLWHRFLPWAEYHYNTSYHTAAGL 639

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +P+Q VYG+  PTI  YV G+S V A D+ L+ RE +L  L+ NL  AQ RM+ L +  R
Sbjct: 640  TPYQVVYGKEPPTIATYVLGTSKVAATDDLLNEREEVLAMLRKNLTKAQERMKTLADNHR 699

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            RD+ F++   V VKLQPYRQS+V+     KL + YFGPF ++ R G VAY L LP  S I
Sbjct: 700  RDVSFEVNSYVHVKLQPYRQSSVSGVKYNKLQKRYFGPFRVLERIGQVAYKLELPSHSKI 759

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            H  FH SLLK + G    +   LP  S DN P + P+AI++SR+ + +G+  +QVLV W+
Sbjct: 760  HNVFHCSLLKPYLGPIPPDAPILPNDSVDNHPTVTPLAILNSRIISVNGQQMQQVLVQWN 819

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSNEKWAGVVLDEAQIQ 382
                ED TWEN       Y   NLEDKV FDG G D +   A  + +  + Q
Sbjct: 820  GLPPEDTTWENWQDLQISY---NLEDKVEFDGIGDDMDSNAAAAINNGPEAQ 868


>gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 856

 Score =  435 bits (1118), Expect = e-140
 Identities = 212/394 (53%), Positives = 275/394 (69%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DVKEF+  CV+CQ  KYSTA P GLLQPL +P  +WEDISLDF+ GLP S G T ILVV+
Sbjct: 418  DVKEFINCCVVCQQTKYSTAKPGGLLQPLPIPSNIWEDISLDFVTGLPLSHGYTVILVVV 477

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K  H GALPT +TA +VA+LF ++V +LHG+P++IVSDRDPIF S+FW  LF+F G
Sbjct: 478  DRFSKAVHLGALPTQFTAYRVAELFVNLVCKLHGLPKSIVSDRDPIFISRFWADLFRFSG 537

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L+MSSSYHPQTDGQTEV NR +EQYLR+F    P +W  FL WAE+HYNTS  SA GM
Sbjct: 538  TLLRMSSSYHPQTDGQTEVTNRTIEQYLRSFVHARPSQWFRFLPWAEFHYNTSFHSAAGM 597

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +P+Q +YG+  PTIP+Y+ GSS V A D+ L++RE +L  L+ NL  AQ RM+   +  R
Sbjct: 598  TPYQVIYGKIPPTIPSYIEGSSSVNACDDMLNSREEILALLRRNLAKAQARMKANADSHR 657

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            R++ F++G  V VKLQPYRQ +V      KL + ++GPF ++ R G VAY L LP  S I
Sbjct: 658  REVSFEVGSWVYVKLQPYRQISVTGEKYSKLSKRFYGPFVVLERIGEVAYKLELPSHSKI 717

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            H  FH S+LK+ +G +  E  PLP  S DN PL+ P+AI++S+  T  G   +QVLV W+
Sbjct: 718  HNVFHCSVLKQHQGPDPSEIDPLPFDSVDNHPLVEPLAIINSKTVTSAGVSKRQVLVQWT 777

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGG 436
                +D +WE+ ++   +Y   NLEDKV  DG G
Sbjct: 778  GLSPDDTSWEDWDNLSSVY---NLEDKVGLDGEG 808


>gb|KYP63409.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 423

 Score =  417 bits (1073), Expect = e-139
 Identities = 207/394 (52%), Positives = 267/394 (67%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DVK FV +C++CQ  KYST  P GLLQPL +P  VWEDISLDF+ GLP S G T +LVV+
Sbjct: 4    DVKSFVAQCLVCQRTKYSTKCPGGLLQPLPIPTGVWEDISLDFVTGLPPSNGYTVLLVVV 63

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K  H GAL +++TA KVA+LF  +V + HG+P++IVSDRDPIF S+FW  LFKF G
Sbjct: 64   DRFSKGVHLGALRSDFTAYKVAELFVSIVCKHHGLPKSIVSDRDPIFISRFWSDLFKFSG 123

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L+MSSSYHPQTDGQTEV+NR +EQYLRAFA D P  W  +L WAEYHYNTS  S  G+
Sbjct: 124  TLLRMSSSYHPQTDGQTEVMNRTIEQYLRAFAHDKPTHWFKYLPWAEYHYNTSVHSGSGL 183

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            SPF+ +YG+P P+IPAYV G+S     D  L+ RE +L  LK NL  AQ RM+ + + KR
Sbjct: 184  SPFEVMYGKPPPSIPAYVEGTSSNIGCDSTLATREEILSLLKTNLAKAQARMKKIADSKR 243

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            RD  F +G  V +KLQPY+Q +V+    +KL + ++GPF ++ R GPVAY + LP  S I
Sbjct: 244  RDQTFAVGSWVYLKLQPYKQISVSGEKYHKLAQRFYGPFQVLERVGPVAYRVELPSSSKI 303

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            H  FH S+LK  +G  +     LP    DN PL+ P+AI++ +    +G PTK  LV W 
Sbjct: 304  HNVFHCSMLKPHEGPVSALIDQLPPSFVDNNPLVTPLAILAFKTVPVNGTPTKFALVQWH 363

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGG 436
                +D +WEN   + +L    +LEDKVV +G G
Sbjct: 364  GLSPDDTSWEN---WLELKSFYDLEDKVVAEGDG 394


>gb|KYP55262.1| Retrotransposable element Tf2, partial [Cajanus cajan]
          Length = 445

 Score =  417 bits (1072), Expect = e-138
 Identities = 205/398 (51%), Positives = 272/398 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV+ FV +C  CQ +KY T  P GLLQPL +P  +WED+SLDFI  LP S+G T++LVV+
Sbjct: 24   DVQHFVAQCHTCQQLKYETKKPAGLLQPLPIPSAIWEDLSLDFITCLPPSRGYTAVLVVV 83

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            D  +K  HFG LPT+++A KVA LF  MV +LHG PR++VSDRDPIF S FW+ LFK  G
Sbjct: 84   DHFSKGVHFGPLPTHFSAFKVAQLFLDMVCKLHGFPRSLVSDRDPIFISHFWRDLFKLSG 143

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MS+SYHP+T+GQTEV+NR LEQYLR+F  DHP +W +FL+ AE+ YNTS  S  G+
Sbjct: 144  TKLRMSTSYHPETNGQTEVINRVLEQYLRSFVHDHPSKWSNFLALAEWSYNTSVHSGTGL 203

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+  YG+P PTI  Y+ GSS V+AVD  L+ REA+   L + L  AQ+ M+ + + KR
Sbjct: 204  TPFEVTYGKPPPTISHYLLGSSSVEAVDNLLATREAIHSSLLHRLTKAQSAMKLIADAKR 263

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            RD+ + +GD V VKL+PYRQ ++     +KL + ++GPF I+ R G VAY L LP  S I
Sbjct: 264  RDVSYSVGDWVYVKLRPYRQQSILGSQFHKLSKRFYGPFQILERIGAVAYRLQLPASSKI 323

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FH SLLK  KG  T +  PLP  + DN PL+ P +I++S+V T    PTK VLV WS
Sbjct: 324  HPVFHCSLLKPHKGLITPQLAPLPPYATDNHPLVEPFSILASKVDTSTFPPTKLVLVQWS 383

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSN 424
                ED +WE  +     ++   LEDK++    G+DSN
Sbjct: 384  GLAPEDTSWEKWDDIQSTFQ---LEDKLLLPAEGNDSN 418


>gb|PNX84282.1| hypothetical protein L195_g040340 [Trifolium pratense]
          Length = 482

 Score =  416 bits (1069), Expect = e-137
 Identities = 206/391 (52%), Positives = 275/391 (70%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV  FVK CVICQ  K +T +PYGLLQPL +P +VWEDISLDF+VGLP+ Q NT ILVV+
Sbjct: 49   DVTAFVKSCVICQQTKPATHSPYGLLQPLPIPGQVWEDISLDFVVGLPSFQANTVILVVV 108

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+K AHFG LPT +TA KVADLF  M+ +LHG+PR+IVSDRDPIF S+FW++LF+  G
Sbjct: 109  DRLSKAAHFGMLPTQFTAAKVADLFVRMICKLHGMPRSIVSDRDPIFLSRFWQELFRLSG 168

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MSS+YHPQ+DGQTE++N+ L+QYLR F  D PK+W  FL WAE+HYNT+  ++ GM
Sbjct: 169  TKLRMSSAYHPQSDGQTEIVNKMLQQYLRCFVHDKPKQWGQFLHWAEWHYNTAIHTSTGM 228

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            SPFQ VYGR  PT+  Y+ GS+ +QAV+     R  +L+ LK  LL AQ  M+   ++KR
Sbjct: 229  SPFQVVYGRAPPTLADYIPGSTNLQAVEANEMERTEVLQMLKKKLLKAQATMKENADQKR 288

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
                F++GD V VKL+PYRQ++VA +  +KL + Y+GPF ++   G VA+ L LP  S I
Sbjct: 289  TQHSFKVGDKVFVKLRPYRQNSVAGKRIHKLAKRYYGPFKLVHALGEVAFQLELPSTSRI 348

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK    D+T+    LP  +  N P + P+A++  +++ + G    +VL+ W 
Sbjct: 349  HPVFHVSQLKPC-FDDTELSLDLPLETVGNLPEIRPLAVLDWQISDDEG--ITKVLIQWE 405

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFD 445
                EDATWE+ +   + Y   NLEDKVVF+
Sbjct: 406  GLFPEDATWEDYDDIKETYPAFNLEDKVVFE 436


>gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pratense]
          Length = 843

 Score =  424 bits (1091), Expect = e-136
 Identities = 208/398 (52%), Positives = 272/398 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D++ F+ KC +CQ+ KY T  P GLLQPL VP  +WED+SLDFI GLP S G T+I VV+
Sbjct: 417  DIRSFIAKCSVCQSTKYETKKPAGLLQPLPVPSGIWEDLSLDFITGLPPSHGYTTIFVVV 476

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K AHF ALPT YTA KVA LF   + + HG+PR++VSDRDP+F SQFW++LFK  G
Sbjct: 477  DRFSKGAHFSALPTTYTAYKVAQLFLDTICKHHGMPRSLVSDRDPVFISQFWRELFKLSG 536

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MS++YHP+TDGQTEVLNR LEQYLRAF    P  W +FLS AE+ YNTS  SA G 
Sbjct: 537  TQLRMSTAYHPETDGQTEVLNRSLEQYLRAFVHHKPSLWFTFLSLAEWSYNTSKHSATGY 596

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            SPF  VYG+   +IP YV G+SP++AVD  L+ R+A L+FL+  LL  Q+ M+ + +KKR
Sbjct: 597  SPFHVVYGKDPVSIPQYVLGTSPIEAVDSMLAERQAFLQFLRRKLLKVQSHMKEIADKKR 656

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            R ++F +GD V +KL+PYRQ ++      KL + YFGP+ I+ + GPVAY L LP  S I
Sbjct: 657  RHVEFNVGDFVYLKLRPYRQRSITLASYNKLSKRYFGPYKILQKIGPVAYKLDLPSTSKI 716

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FH SLLK  +GD       LP  + D++P++ P+AIV +++ T    PT+ VLV W 
Sbjct: 717  HPVFHCSLLKLHQGDLPAAHAELPPSTIDHQPIIEPLAIVDTKMDTATDPPTRMVLVQWL 776

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSN 424
               LE+ +WE  +     Y   +LEDKV F G   DSN
Sbjct: 777  GLPLEETSWETWDDLQATY---HLEDKVTFPGECIDSN 811


>gb|PNX78431.1| transposon Tf2-1 polyprotein, partial [Trifolium pratense]
          Length = 562

 Score =  413 bits (1061), Expect = e-135
 Identities = 211/435 (48%), Positives = 288/435 (66%), Gaps = 1/435 (0%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV  F+K C  CQ  K+ T +PYGLLQPL +P  VWEDIS+DFIVGLP  Q  T + VV+
Sbjct: 135  DVTNFIKACSTCQQTKHPTHSPYGLLQPLPIPTGVWEDISMDFIVGLPPFQHFTVVFVVV 194

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K AHFG LPT++TATKVADLF  MV +LHG+P++I+SDRDPIF S+FW++LF   G
Sbjct: 195  DRFSKAAHFGMLPTHFTATKVADLFATMVSKLHGMPKSIISDRDPIFMSKFWQQLFILSG 254

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L+MS++YHPQTDGQTE++N+ L+QYLR F  D PK+W +FL WAE+HYNTS  S+ G 
Sbjct: 255  TVLRMSTAYHPQTDGQTEIVNKALQQYLRCFVHDQPKKWGAFLHWAEWHYNTSQHSSTGF 314

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+ VYG+  P+IP YV G++P++A+D  L++RE +L+ L+  LL AQ+ M+   +K R
Sbjct: 315  TPFEVVYGKKPPSIPQYVSGTTPIEALDATLTDRETILQVLRKKLLKAQDDMKKFADKHR 374

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
                F+ GD   VKL+PYRQ++VA     KL + YFGPF +I   GPVA+ L LPP S I
Sbjct: 375  IPHPFKEGDFAYVKLRPYRQTSVAGHRIQKLAKRYFGPFKLIRAMGPVAFELALPPDSKI 434

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK    D T +  PLP ++ +++ ++ P+A++  R  ++       VLV W+
Sbjct: 435  HPVFHVSQLKPC-FDPTNDSSPLPSMNAEDQLVIEPLAVLGWRHDSD--GILSHVLVQWA 491

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSNEKWAGVVLDEAQIQDQL-KSWA 361
              L ED +WE L+     Y   NLEDKV  DGG    +       ++EAQ+++ + K   
Sbjct: 492  GLLPEDTSWEPLSDLKLAYPQFNLEDKVAVDGGKDVMDP------VNEAQLEEPMGKGKR 545

Query: 360  ITEKEAQLEGNQAEK 316
            I  K    +  Q  K
Sbjct: 546  IKSKPIWFDDFQVSK 560


>gb|KYP37665.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
          Length = 976

 Score =  416 bits (1069), Expect = e-131
 Identities = 201/398 (50%), Positives = 275/398 (69%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D+K +V++C+I Q  K ST  P GLLQPL +P+++W+D+++DFIVGLP S G T I+VVI
Sbjct: 525  DIKSYVQQCLIYQQAKSSTTLPAGLLQPLPIPQQIWDDLAMDFIVGLPPSYGFTVIMVVI 584

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+KYAHF  L  +Y++ +VA++F   ++RLHG+P++IVSDRD +FTS FW++L K  G
Sbjct: 585  DRLSKYAHFCQLKADYSSKQVAEVFMKSIVRLHGIPKSIVSDRDRVFTSNFWQQLCKLSG 644

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MS++YHPQ+DGQ+E LNR LE YLR F  D PK W   L WAEY YNTS  ++IGM
Sbjct: 645  TTLAMSTAYHPQSDGQSEALNRCLEMYLRCFTVDDPKSWSKMLPWAEYWYNTSFHTSIGM 704

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+AVYGR  PT+P YV+  +   ++ E L +R+  +  LK NL+ AQN M+   ++KR
Sbjct: 705  TPFKAVYGRDPPTLPKYVKDDTEPPSLQEILLHRDQTILCLKQNLMKAQNLMKKYADQKR 764

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
              ++FQ+GD+V VKLQPYRQ +VA R N KL   YFGPFP++ R G VAY L LPP + I
Sbjct: 765  VHVEFQVGDLVFVKLQPYRQHSVALRKNQKLGLRYFGPFPVMQRIGLVAYKLALPPTAKI 824

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVSLLK  KG++ +++ PLP L+ +  P++ P+ ++ SRV     +   QVLV W 
Sbjct: 825  HPVFHVSLLKPCKGEHQQQYLPLPFLTNEFGPVIQPLKVLQSRVILRENQHIPQVLVQWE 884

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSN 424
               +   TWE+  +    Y   NLEDKVV  GG +  N
Sbjct: 885  GLDISQVTWEDALTLQSEYPNFNLEDKVVVHGGSNVMN 922


>gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1139

 Score =  420 bits (1079), Expect = e-131
 Identities = 204/400 (51%), Positives = 277/400 (69%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D+ +FV +C+ CQ  K STA P GLLQPL +P ++WEDI++DFI GLP S G T I VV+
Sbjct: 646  DITKFVTECLTCQQAKSSTALPAGLLQPLPIPLQIWEDIAMDFITGLPPSNGFTVIFVVV 705

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+KY HF  L +++ A KVA  F + +++LHG+P++IVSDRD +FTSQFW++LF+  G
Sbjct: 706  DRLSKYGHFTPLKSDFDAPKVAAAFFNNIVKLHGIPKSIVSDRDKVFTSQFWQQLFRLSG 765

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MS++YHPQTDGQ+E LN+ LE YLR F   +PK W   L WAEY YNT+ Q++I M
Sbjct: 766  TTLAMSTAYHPQTDGQSEALNKCLEMYLRCFTGTNPKSWARLLPWAEYWYNTAFQNSIAM 825

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+AVYGR  P++  YV  S+    + E L  R+ +L+ LK+NLL AQ  M+   +KKR
Sbjct: 826  TPFKAVYGRDPPSLIRYVPQSNDPPNLQELLIERDVVLQQLKSNLLTAQGFMKKFADKKR 885

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            R ++FQ+GD VLVKLQPYRQ +V  R N KL   YFGPF ++ + GPVAY L LPPG+ I
Sbjct: 886  RILEFQVGDSVLVKLQPYRQHSVVLRKNQKLGLRYFGPFTVLAKVGPVAYRLQLPPGTKI 945

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVSLLK  KG++   + PLP L   + PLL P+ ++ +R+   +G+   Q L+ W 
Sbjct: 946  HPVFHVSLLKPCKGEHDNTYLPLPLLQHAHGPLLTPLRVLQTRMVPSNGQLIAQALIQWD 1005

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSNEK 418
                 +ATWE+  +  + Y   NLEDKVVF+GGG+ + +K
Sbjct: 1006 GLTEAEATWEDCLTLKKNYPSLNLEDKVVFNGGGNVTYDK 1045


>gb|KYP53324.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 751

 Score =  409 bits (1051), Expect = e-131
 Identities = 200/395 (50%), Positives = 271/395 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV  FV++C+ICQ  K S + P GLLQPL +P++VW+D+++DFI GLPNS G T I+VVI
Sbjct: 299  DVTRFVQQCIICQQAKVSHSLPAGLLQPLPIPQQVWDDVAMDFITGLPNSCGFTVIMVVI 358

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+KY+HF  L +++++  VA+ F   +++LHG+P++IVSDRD +FTS FW+ LFK  G
Sbjct: 359  DRLSKYSHFVPLKSDFSSKVVAEAFTLHIVKLHGLPKSIVSDRDKVFTSNFWQHLFKLQG 418

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MSS+YHPQTDGQ+EVLN+ LE +LR F  D+PK W   L+WAEY YNTS  +++GM
Sbjct: 419  TTLAMSSAYHPQTDGQSEVLNKCLEMFLRCFTFDNPKSWSKGLTWAEYWYNTSFHTSLGM 478

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+A+YGR  PT+  Y R  +  + V ++L+ R+ LL  LK NL  AQ RM+H  +KKR
Sbjct: 479  TPFKALYGRDPPTLTRYQRSPTDPRDVQDQLTKRDQLLDQLKCNLTKAQQRMKHQADKKR 538

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
             D+QFQ+GD VLVKLQPYRQ +V  R + KL   YFGPF ++G+ G VAY L LP  + I
Sbjct: 539  SDMQFQVGDQVLVKLQPYRQHSVVLRKHQKLSMRYFGPFKVLGKVGVVAYKLELPETARI 598

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FH+S LK FKG +   + PLP  + +  P L P+AI+ +R   +  K   QVLV W 
Sbjct: 599  HPVFHISQLKPFKGISNAPYMPLPLTTSELGPFLQPVAILHARTILQGSKLLSQVLVQWD 658

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGS 433
             S     +WE++      +   NLEDKVV  G G+
Sbjct: 659  PSSNVPNSWEDVTFIKTHFPYLNLEDKVVLKGEGN 693


>dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifolium subterraneum]
          Length = 1147

 Score =  418 bits (1075), Expect = e-131
 Identities = 205/400 (51%), Positives = 276/400 (69%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV +FVK C +CQ  K +  +PYGLLQPL +P RVWED+SLDFIVGLP+ Q +T+ILVV+
Sbjct: 697  DVIQFVKSCSVCQQNKPTNHSPYGLLQPLPIPHRVWEDVSLDFIVGLPSFQSHTAILVVV 756

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+K AHFG LPT++TA KVADLF  M+ RLHG+PR++VSDRDPIF S FW++LF   G
Sbjct: 757  DRLSKAAHFGLLPTHFTAVKVADLFAKMICRLHGMPRSMVSDRDPIFLSHFWQELFHLSG 816

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MS++YHPQ+DGQTE++N+ L+QYLR F +D P +W  FL WAE+HYNT+  ++ G+
Sbjct: 817  TKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVSDKPSQWGKFLHWAEWHYNTATHTSTGL 876

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            SPFQ VYGR  PT+  Y+ GSS +QA+D  LS+R  +L+ LKN LL AQ  M+   ++ R
Sbjct: 877  SPFQVVYGRAPPTLVDYIPGSSTIQAIDATLSDRNIILQLLKNKLLKAQQIMKEQADQHR 936

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
                F+ GD+V VKL+PYRQ++V  R  +KL + ++GPF +I   G VA+ L LPP S I
Sbjct: 937  ISHSFKEGDLVFVKLRPYRQNSVLGRRVHKLSKRFYGPFKLIKAIGEVAFELELPPNSKI 996

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK    +NT     LP  + DN+P + P+A++  +          +VL+ W 
Sbjct: 997  HPVFHVSQLKPCFDNNTATL-ELPTEAIDNQPCIQPLAVLDWK--NNELNDQIEVLIQWK 1053

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDSNEK 418
                EDATWEN       Y   +LEDKV+ +G   + N+K
Sbjct: 1054 GLFPEDATWENYEDIKATYPAFDLEDKVILNGTRDEVNQK 1093


>gb|PNX96980.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1220

 Score =  419 bits (1078), Expect = e-130
 Identities = 211/394 (53%), Positives = 278/394 (70%), Gaps = 1/394 (0%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV +FVK C ICQ  K+    PYGLLQPL VP  VWEDISLDFI+GLP+ Q +T ILVV+
Sbjct: 814  DVTKFVKACDICQQTKHPNHLPYGLLQPLPVPAGVWEDISLDFIIGLPSFQTHTVILVVV 873

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K AHFG LPT++TA+KVADLF  M+ RLHG+P++IVSDRDPIF S+FW+KLF+  G
Sbjct: 874  DRFSKAAHFGMLPTHHTASKVADLFARMICRLHGMPKSIVSDRDPIFVSKFWQKLFQLSG 933

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MS++YHPQTDGQTE++N+ L+QYLR F  + PK W +FL WAE+HYNTS  S+ G 
Sbjct: 934  TKLRMSTAYHPQTDGQTEIVNKALQQYLRCFVHNTPKTWGNFLHWAEWHYNTSIHSSTGF 993

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+ VYG+  P++P Y+ G++ ++A+D  L++RE +L+ LKN LL AQ  M+   +K R
Sbjct: 994  TPFEVVYGKKPPSLPQYLTGTTDIEALDTMLTDRENILQILKNKLLKAQETMKRFADKSR 1053

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVA-HRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSW 721
                F+ GD V VKL+P+RQ +VA HRL  KL + Y+GPF II   GPVA+ L LP GS 
Sbjct: 1054 IPHPFKEGDYVYVKLRPHRQVSVAGHRLR-KLSKRYYGPFQIIKAMGPVAFELSLPQGSK 1112

Query: 720  IHPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHW 541
            IHP FHVS LK     +T     LP L+ DN+P++ P+AI+  R   + G   +QVL+ W
Sbjct: 1113 IHPVFHVSQLKPCDSTSTPPL-NLPPLAVDNQPIVQPLAILGWR--HKEGTDQQQVLIQW 1169

Query: 540  SHSLLEDATWENLNSFCQLYKMPNLEDKVVFDGG 439
               L ED TWE+L     ++   NLEDKV  + G
Sbjct: 1170 EGMLPEDTTWEDLEDMRAIFPDLNLEDKVFVEEG 1203


>emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]
          Length = 647

 Score =  404 bits (1038), Expect = e-130
 Identities = 204/395 (51%), Positives = 266/395 (67%)
 Frame = -3

Query: 1614 VKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVID 1435
            V E+V  C +CQ  K ST +P GLLQPL +P +VW+DI++DFI GLP SQG  +ILVV+D
Sbjct: 236  VNEYVSSCDVCQRAKASTLSPAGLLQPLPIPCQVWDDITMDFIEGLPPSQGKNTILVVVD 295

Query: 1434 RLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMGT 1255
            RL+K AHF AL   ++A  VA+ F   VI+LHG+P +I+SDRDPIF S FW + FK  GT
Sbjct: 296  RLSKSAHFLALTHPFSAKMVAEKFVDGVIKLHGMPSSIISDRDPIFISNFWHEFFKLSGT 355

Query: 1254 RLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGMS 1075
            +LKMSS+YHPQTDGQTEV+NR +EQYLR      P++W+S LSWA++ YN ++ ++  MS
Sbjct: 356  QLKMSSAYHPQTDGQTEVINRCVEQYLRCLVHQQPRKWYSLLSWADFWYNIAYHASTSMS 415

Query: 1074 PFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKRR 895
            PFQA+YGRP P IP Y  GSS V  V++ L++R+ LL  LK NL  A NRM+ + + KRR
Sbjct: 416  PFQALYGRPPPMIPHYQLGSSLVNEVNQNLASRDDLLHQLKLNLHQASNRMKQIADSKRR 475

Query: 894  DIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWIH 715
            DI+F  GD+V ++L PYRQ TV  R + KL   ++ PFPI  R G VAY L LP GS IH
Sbjct: 476  DIEFNEGDLVFLRLHPYRQQTVFKRASQKLAHRFYEPFPIEKRIGKVAYQLQLPAGSRIH 535

Query: 714  PTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWSH 535
            P FHVSLLK+  GD+      LP L+ D   ++ P  I+ +R   + G   ++ LV W +
Sbjct: 536  PVFHVSLLKKTIGDSNACCPTLPPLTDDGAFIIEPTEIIDTRWFKKGGNFFEECLVKWKN 595

Query: 534  SLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSD 430
             L+EDATWEN       +   NLEDKV+   GG D
Sbjct: 596  LLVEDATWENAAELHDRFPDLNLEDKVLVKVGGID 630


>gb|PNY14541.1| hypothetical protein L195_g011223 [Trifolium pratense]
          Length = 763

 Score =  407 bits (1047), Expect = e-130
 Identities = 193/394 (48%), Positives = 268/394 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D+ ++V+KCVICQ  K    +P GLLQPL +P +VWEDI++DFI GLP S   T+I+VV+
Sbjct: 310  DIWDYVQKCVICQQAKTVHTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYSYTTIMVVV 369

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRLTKYAHF  + ++YT+  VA+ F H +++LHG+ ++IVSDRD +FTS FW++LFK  G
Sbjct: 370  DRLTKYAHFIPMRSDYTSKSVAEAFIHNIVKLHGMSKSIVSDRDKVFTSNFWQQLFKLQG 429

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MSS+YHPQ+DGQTEVLN+ LE +LR F+ ++PK W+  LSWAEY YNT+ Q++IGM
Sbjct: 430  TSLTMSSAYHPQSDGQTEVLNKGLELFLRCFSFNNPKSWYKVLSWAEYWYNTTFQTSIGM 489

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+A+YGR  P++  Y   +     + EEL  R+ +L+ LK NL  AQ  M+   +K R
Sbjct: 490  TPFKALYGREPPSLTKYEAHADDSPTIQEELMERDKILQQLKTNLDRAQQYMKKQADKNR 549

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
             ++  Q+G++VLVKLQPYRQ +VA R N KL   YFGPF II R G VAY L LP  + I
Sbjct: 550  TEVNLQVGELVLVKLQPYRQQSVALRKNQKLGMRYFGPFEIIARIGKVAYKLKLPDNAKI 609

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK FKG    ++ PLP    +  P++ P++I+ +R      +   Q+L+ W 
Sbjct: 610  HPVFHVSQLKPFKGTTQDQYLPLPLTMSEVGPIIQPVSILDARTIVRESQKVHQILIQWD 669

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGG 436
             +   + TWE+ +     +   NLEDK+VF+G G
Sbjct: 670  QTTPAETTWEDFDDLQNKFPTLNLEDKIVFNGEG 703


>gb|KYP66317.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 689

 Score =  405 bits (1041), Expect = e-130
 Identities = 194/394 (49%), Positives = 270/394 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DV EFVK C +CQ +K  T  PYGLLQPL  P  +WEDISLDF+ GLP+ Q  T I VV+
Sbjct: 244  DVTEFVKACAVCQQVKSPTHLPYGLLQPLAPPTAIWEDISLDFVTGLPSFQTYTVIFVVV 303

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K AHFG LPT++TA KVA+LF  MV +LHG+P++IVSDRDPIF S FW++LF+  G
Sbjct: 304  DRFSKAAHFGMLPTSFTAVKVAELFAIMVCKLHGMPKSIVSDRDPIFMSHFWQELFRMSG 363

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MSS+YHPQ+DGQTE +N+ LEQYLRAF    P+ W  +L WAE+HYN++  +  G+
Sbjct: 364  TKLRMSSAYHPQSDGQTEAVNKMLEQYLRAFVHTEPRLWGKYLHWAEWHYNSAKHTTTGI 423

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +P++ VYG+P P++P Y+ G+S  +A++ +L+ RE LL  L++ LL AQ+ M+H  ++KR
Sbjct: 424  TPYEVVYGQPPPSLPQYLIGTSRNEAMNSDLTAREELLAKLRSKLLKAQSTMKHYADQKR 483

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
                F++GD VLVKL+PYRQ T  +    KL + ++GPF ++ + G VA+ L LP G+ I
Sbjct: 484  LPHPFRVGDYVLVKLRPYRQVTTKNNRTSKLAQRFYGPFRVVKQIGDVAFQLDLPDGAQI 543

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK FK  +      LP ++  N+P L P+A++  R +   G   ++ L+ W 
Sbjct: 544  HPVFHVSKLKLFKNSDVTPALELPPVTCHNQPKLQPLAMLDWRESPRSG--AREALIQWQ 601

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGG 436
                EDATWE+L    + Y   +LEDKV  +G G
Sbjct: 602  GLFPEDATWEDLEMLLEEYPTLHLEDKVFVEGKG 635


>gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium pratense]
          Length = 869

 Score =  408 bits (1048), Expect = e-129
 Identities = 199/394 (50%), Positives = 267/394 (67%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D+K FV+ C+ICQ  K+ T AP GLLQPL +P++VWEDI++DFI GLP S G T I+VVI
Sbjct: 424  DIKLFVQNCLICQQAKHDTRAPAGLLQPLPIPEQVWEDIAMDFITGLPPSNGYTVIMVVI 483

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRLTKY+HF  L  +Y +  VA++F   V++LHG+P++IVSDRD +F S+FWK+LF+  G
Sbjct: 484  DRLTKYSHFSPLKIDYNSKTVAEVFMKTVVKLHGLPKSIVSDRDKVFISKFWKELFQLQG 543

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MSS+YHPQTDGQ+E LN+ LE YLR     +PK W   L WAEY YNT++ +++GM
Sbjct: 544  TTLSMSSAYHPQTDGQSEALNKCLEMYLRCLTFQNPKSWFKALDWAEYWYNTAYHNSLGM 603

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PFQA+YGR  PT+  Y    +    V ++L  R+ L+  LK+NL  AQ  M++  +K R
Sbjct: 604  TPFQALYGRTPPTLVRYTHSPTDTLDVQQQLMERDRLIATLKDNLKRAQQIMKNQADKHR 663

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            RD QF++G+ VLVKLQPYRQ++VA R N KL   YFGPF II + G VAY + LP  + I
Sbjct: 664  RDAQFEVGEQVLVKLQPYRQNSVALRKNQKLGMRYFGPFTIIEKVGKVAYKVQLPVEAKI 723

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FH+S LK+FKG  T  + PLP  + +  P+L PIA++  R    +    +QVL+ W 
Sbjct: 724  HPVFHISQLKQFKGRATDPYIPLPLTTHELGPILQPIAVLQRRDIVRNEHAIQQVLIKWE 783

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGG 436
                 DATWE+++   + Y   NLEDKV   G G
Sbjct: 784  GLNDTDATWEDVDEITENYPNFNLEDKVEVKGKG 817


>gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1410

 Score =  420 bits (1079), Expect = e-129
 Identities = 207/397 (52%), Positives = 272/397 (68%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            DVK FV  C+ CQ  KY T  P GLLQPL VP  +WED+SLDFI GLP S G T ILVV+
Sbjct: 976  DVKHFVSNCLTCQATKYETKKPAGLLQPLPVPSAIWEDLSLDFITGLPPSHGFTVILVVV 1035

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DR +K AHFGALP++++A KVA LF  ++ + HG+PR++VSDRDPIF S+FW++LFK  G
Sbjct: 1036 DRFSKGAHFGALPSSFSAYKVAALFLDIICKHHGLPRSLVSDRDPIFISRFWRELFKLSG 1095

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T+L+MS+SYHP+TDGQTEVLNR LEQYLR+F    P  WH FL  AE+ YNT+  SA G 
Sbjct: 1096 TKLRMSTSYHPETDGQTEVLNRILEQYLRSFVHSKPTHWHQFLPLAEWSYNTTSHSATGR 1155

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            SPF+  +G+P P+IP+Y+ GSS V+AVD  L+ R+  +  L+  LL AQ  M+   ++KR
Sbjct: 1156 SPFEITFGKPPPSIPSYLLGSSNVEAVDTLLTTRQHTITLLQRKLLKAQETMKFYADQKR 1215

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            R++ + +GD V VKL+PYRQ ++      KL + ++GP+ I+ R GPVAY L LPP S I
Sbjct: 1216 RELSYAVGDFVYVKLRPYRQQSLTGSTYSKLSKRFYGPYKIVERIGPVAYKLELPPQSKI 1275

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FH SLLK+ +G  T     LP  + DN+P++ P+AI+ SR       P +QVLV W 
Sbjct: 1276 HPVFHCSLLKQHRGPLTAAPDDLPPSNVDNQPVIQPLAILDSRTDHNINPPQRQVLVQWL 1335

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGSDS 427
              L EDATWE+ N+    +   +LEDKV F  G  D+
Sbjct: 1336 GLLPEDATWEDWNTLNSNF---HLEDKVNFPAGSDDT 1369


>gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1571

 Score =  422 bits (1085), Expect = e-129
 Identities = 206/411 (50%), Positives = 281/411 (68%), Gaps = 4/411 (0%)
 Frame = -3

Query: 1617 DVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSILVVI 1438
            D+KEFV KC+ICQ  K+STA P GLL PL +P+++WED+S+DFI+GLP S   T ILVV+
Sbjct: 1122 DIKEFVSKCLICQQAKHSTAVPAGLLHPLPIPQQIWEDLSMDFIIGLPPSHTYTVILVVV 1181

Query: 1437 DRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFKFMG 1258
            DRL+KY+HF  L  +YT++KVA+ F + +++LHG P+TIVSDRD +FTSQFW+ LFK  G
Sbjct: 1182 DRLSKYSHFIPLKGDYTSSKVAEAFVNTIVKLHGFPKTIVSDRDRVFTSQFWQHLFKISG 1241

Query: 1257 TRLKMSSSYHPQTDGQTEVLNRYLEQYLRAFAADHPKRWHSFLSWAEYHYNTSHQSAIGM 1078
            T L MS++YHPQTDGQ+E +N+ LE YLR F +D PK+W   L WAE+ YNTS  ++IGM
Sbjct: 1242 TTLAMSTAYHPQTDGQSEAVNKCLELYLRCFTSDSPKQWVKLLPWAEFWYNTSFHTSIGM 1301

Query: 1077 SPFQAVYGRPSPTIPAYVRGSSPVQAVDEELSNREALLRFLKNNLLHAQNRMRHLVNKKR 898
            +PF+ VYGR  P++  Y   +     + + L+ R+  +  LK NL  AQ  M+   + KR
Sbjct: 1302 TPFKVVYGRDPPSLIRYEVNNDDPPLLQQLLTERDDTIITLKANLARAQQIMKKFADNKR 1361

Query: 897  RDIQFQLGDMVLVKLQPYRQSTVAHRLNYKLCRGYFGPFPIIGRAGPVAYTLGLPPGSWI 718
            R ++FQ+GDMVLVKLQPYRQ +V  R N KL   YFGPFP+I R G VAY L LPP + I
Sbjct: 1362 RFVEFQVGDMVLVKLQPYRQHSVVLRRNQKLSMRYFGPFPVIERIGQVAYKLMLPPSAKI 1421

Query: 717  HPTFHVSLLKEFKGDNTKEFYPLPELSKDNKPLLAPIAIVSSRVTTEHGKPTKQVLVHWS 538
            HP FHVS LK  KG+++ +  PLP  + ++ P+L+PIAI+  R   ++ +P +QV V W 
Sbjct: 1422 HPVFHVSALKLCKGEHSTQLMPLPLTTTEHGPMLSPIAIIDRRTIIQNAQPVQQVQVQWE 1481

Query: 537  HSLLEDATWENLNSFCQLYKMPNLEDKVVFDGGGS----DSNEKWAGVVLD 397
              L  + TWE  + F   Y  PNLEDKV+ + G +    D+N  W   +++
Sbjct: 1482 GLLPTETTWEKWDEFHSSY--PNLEDKVLVNEGSNVMIKDNNMSWQEKIVE 1530