BLASTX nr result
ID: Rehmannia30_contig00019511
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00019511
(2413 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 770 0.0
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif... 761 0.0
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 771 0.0
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 754 0.0
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 754 0.0
gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium prat... 732 0.0
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt... 759 0.0
gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 729 0.0
gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 746 0.0
gb|AAO23078.1| polyprotein [Glycine max] 747 0.0
gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 736 0.0
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 734 0.0
gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pra... 720 0.0
gb|OMO81561.1| reverse transcriptase [Corchorus capsularis] 742 0.0
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 740 0.0
gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan] 738 0.0
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt... 739 0.0
gb|OMO55704.1| reverse transcriptase [Corchorus capsularis] 751 0.0
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 737 0.0
gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifo... 723 0.0
>gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 856
Score = 770 bits (1989), Expect = 0.0
Identities = 394/795 (49%), Positives = 524/795 (65%), Gaps = 2/795 (0%)
Frame = +2
Query: 23 FGNFKHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGF 202
F F++K SKCSF Q+ + YLGH+V G V DP K +A+ WP P +VK LRGF
Sbjct: 74 FTILSEQQFHLKASKCSFGQSKVSYLGHIVEGGTVAPDPLKIQAVDDWPTPKSVKGLRGF 133
Query: 203 LGLIGYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTM 382
LGL G+YR+FVR YASIA PLT+LL DAF+W+ DA F+ LK A+V APVL LPDF++
Sbjct: 134 LGLSGFYRKFVRNYASIAHPLTELLKKDAFKWSSDAQTTFDALKSALVNAPVLALPDFSV 193
Query: 383 EFVVETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLL 562
FVV+TDAS+ +GAVL Q HPI YFSK P+M ASTYL+ELHAI AVK+WRQYLL
Sbjct: 194 PFVVQTDASSQAMGAVLLQGDHPIAYFSKLFCPRMTRASTYLRELHAITSAVKRWRQYLL 253
Query: 563 GRSFIIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGD 742
G+ FII+TDH+S+KEL QV+ TPEQQ Y+ KL+GY + I+Y+PGK N+VADALSR
Sbjct: 254 GQFFIIQTDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGKSNTVADALSR---- 309
Query: 743 ENALEPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRI-ATDSSLQNFSVKEGI 919
A E + + H + S P + FLD ++ + S +P EL +I +T F++++ +
Sbjct: 310 --AFEGVDATLH--ILSLPQFLFLDELRQDLSNDPAYIELRAKIESTPHQFPEFTLRDAL 365
Query: 920 LYFQHRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKS 1099
+ ++ + S K +M EFH T + GH GI +TL R++ FYW MR DV++F+
Sbjct: 366 ILRHNKIWVSPTSRFKRLLMKEFHETPVGGHGGIVKTLKRLSENFYWANMRTDVKEFINC 425
Query: 1100 CQVCQQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAH 1279
C VCQQ KYST P GLLQPLPIPS +W+++++DF+TGLP S G+ VILVVVD+ +K+ H
Sbjct: 426 CVVCQQTKYSTAKPGGLLQPLPIPSNIWEDISLDFVTGLPLSHGYTVILVVVDRFSKAVH 485
Query: 1280 FGALPAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSA 1459
GALP QF+A + AELF ++V K+HG P SI+SDRDPIF+S FW LF+ +GT LR SS+
Sbjct: 486 LGALPTQFTAYRVAELFVNLVCKLHGLPKSIVSDRDPIFISRFWADLFRFSGTLLRMSSS 545
Query: 1460 FHPQTDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFG 1639
+HPQTDGQTEV NR++EQYLR F +P +W L WAEF YNT++HSA +TP+Q ++G
Sbjct: 546 YHPQTDGQTEVTNRTIEQYLRSFVHARPSQWFRFLPWAEFHYNTSFHSAAGMTPYQVIYG 605
Query: 1640 RPPPSIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIG 1819
+ PP+IP Y S S+ A D++L R+E+L L+ NL +AQ RM A+ HRRE + +G
Sbjct: 606 KIPPTIPSYIEGSSSVNACDDMLNSREEILALLRRNLAKAQARMKANADSHRREVSFEVG 665
Query: 1820 DKV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSV 1999
V V+LQPYRQ +V KL KR+YGPF VLE+ G V YKL+L S+IH VFH SV
Sbjct: 666 SWVYVKLQPYRQISVTGEKYSKLSKRFYGPFVVLERIGEVAYKLELPSHSKIHNVFHCSV 725
Query: 2000 LKPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESST 2179
LK G + + + PLP + +NHP+ +P+AI V G QVLVQW+ + ++
Sbjct: 726 LKQHQGPDPSEIDPLPFDSVDNHPLVEPLAIINSKTVTSAGVSKRQVLVQWTGLSPDDTS 785
Query: 2180 WGDLDQLQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMR-K 2356
W D D L + +LEDKV L G NP L E + ++ E P+ K
Sbjct: 786 WEDWDNLSSVY---NLEDKVGLDGEGIVTYNP----LITREKSTSTESNKIDEAGPVNTK 838
Query: 2357 SNRLKITPKWHKDYV 2401
R+ P HKDYV
Sbjct: 839 PKRITKPPVKHKDYV 853
>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
Length = 893
Score = 761 bits (1965), Expect = 0.0
Identities = 387/793 (48%), Positives = 524/793 (66%), Gaps = 1/793 (0%)
Frame = +2
Query: 23 FGNFKHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGF 202
F + HHF++K +KCSF Q+++ YLGH+V AG V DP+K + + WP P +VK LRGF
Sbjct: 116 FSILETHHFHLKTTKCSFCQSTIAYLGHIVTAGTVAPDPQKIQGVLDWPTPKSVKNLRGF 175
Query: 203 LGLIGYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTM 382
LGL G+YRRFVR YA++A PLT LL +AF WT A AF++LK A+ APVL LP+FT+
Sbjct: 176 LGLSGFYRRFVRNYATMAHPLTSLLKKNAFDWTSAAQLAFDQLKIALSTAPVLSLPNFTI 235
Query: 383 EFVVETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLL 562
FVV+TDAS +GAVL HPI YFSK P++ ASTY++ELHAI AVK+WRQYLL
Sbjct: 236 PFVVQTDASGQAMGAVLLHGDHPIAYFSKIFCPRLSKASTYIRELHAITSAVKRWRQYLL 295
Query: 563 GRSFIIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGD 742
G F+I++DH+S+KEL QV+ TPEQQ Y+ KL+GY + I+Y+PGK N VADALSR
Sbjct: 296 GHFFVIQSDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGKTNVVADALSR---- 351
Query: 743 ENALEPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQEL-HQRIATDSSLQNFSVKEGI 919
EP S+ L S P + F++ ++ E N QEL H I+ + +F + G+
Sbjct: 352 --CCEPSSA--ELNLLSTPPFLFINELREELQQNSSYQELCHNVISDPTKFPDFVISNGL 407
Query: 920 LYFQHRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKS 1099
L R I + S K+ ++ EFH T + GH G+ +TL R++A FYW MR++++DFV
Sbjct: 408 LLMNGRIWIPANSKFKVLLLKEFHETPVGGHAGVIKTLKRLSANFYWQHMRKEIKDFVAR 467
Query: 1100 CQVCQQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAH 1279
C +CQQ KYST P+GLLQPLPIPS VW+++++DFITGLP S G++V+LVVVD+ +K H
Sbjct: 468 CFICQQTKYSTSKPSGLLQPLPIPSNVWEDISLDFITGLPLSGGYSVLLVVVDRFSKYTH 527
Query: 1280 FGALPAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSA 1459
GALP+ F+A + AELF +MV K+HG P SI+SDRDPIF+S FW LFK +GT LR SS+
Sbjct: 528 LGALPSHFTAYKVAELFVNMVCKLHGMPRSIVSDRDPIFISKFWSDLFKFSGTLLRMSSS 587
Query: 1460 FHPQTDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFG 1639
+HPQTDGQTEV NR++EQYLR F ++P W L WAE+ YNT+YH+A LTP+Q ++G
Sbjct: 588 YHPQTDGQTEVTNRTIEQYLRAFVHQRPMLWHRFLPWAEYHYNTSYHTAAGLTPYQVVYG 647
Query: 1640 RPPPSIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIG 1819
+ PP+I Y + + A D+LL ER+E+L L+ NL +AQ RM A+ HRR+ + +
Sbjct: 648 KEPPTIATYVLGTSKVAATDDLLNEREEVLAMLRKNLTKAQERMKTLADNHRRDVSFEVN 707
Query: 1820 DKV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSV 1999
V V+LQPYRQ++V+ KL KRY+GPF VLE+ G V YKL+L S+IH VFH S+
Sbjct: 708 SYVHVKLQPYRQSSVSGVKYNKLQKRYFGPFRVLERIGQVAYKLELPSHSKIHNVFHCSL 767
Query: 2000 LKPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESST 2179
LKP++G LP + +NHP P+AI + G+++ QVLVQW+ P E +T
Sbjct: 768 LKPYLGPIPPDAPILPNDSVDNHPTVTPLAILNSRIISVNGQQMQQVLVQWNGLPPEDTT 827
Query: 2180 WGDLDQLQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMRKS 2359
W + LQ + +LEDKV G DM + +N+ AQ S + P+R +
Sbjct: 828 WENWQDLQISY---NLEDKVEFDGIGDDMDSNAAAAINNGPEAQ----SNSATTRPVR-N 879
Query: 2360 NRLKITPKWHKDY 2398
RL K H Y
Sbjct: 880 KRLPAKFKDHHLY 892
>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1494
Score = 771 bits (1991), Expect = 0.0
Identities = 399/798 (50%), Positives = 528/798 (66%), Gaps = 1/798 (0%)
Frame = +2
Query: 23 FGNFKHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGF 202
F H F++K+SKCSF Q + YLGHVV AG V DP K +A+ WP P TVK LRGF
Sbjct: 710 FSVLSQHQFHLKISKCSFCQPQIAYLGHVVAAGTVAPDPAKIQAIIDWPPPKTVKGLRGF 769
Query: 203 LGLIGYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTM 382
LGL G+YR+FVRGYA++A PLT LL DAF+W+++ A LKQA+ APVL LP F
Sbjct: 770 LGLSGFYRKFVRGYAALALPLTQLLRKDAFKWSQEEQKALETLKQALATAPVLGLPKFDE 829
Query: 383 EFVVETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLL 562
F+V+TDAS +GAVL Q HP+ YFSK P+M ASTYL+ELHA+ AVK+WRQYLL
Sbjct: 830 PFIVQTDASGKAMGAVLLQGEHPLAYFSKVFCPRMMKASTYLRELHAVTSAVKRWRQYLL 889
Query: 563 GRSFIIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGD 742
G FII+TDHKS+KEL QV+ TPEQQ Y+ KL+GY + I+Y+PG N+VADALSR
Sbjct: 890 GHYFIIQTDHKSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGSTNTVADALSR---- 945
Query: 743 ENALEPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATD-SSLQNFSVKEGI 919
+L+P S S P + F++ +K + + QEL I TD + ++VK G+
Sbjct: 946 --SLDP--SDASIMALSVPQFVFINELKQDLEADSTFQELRACIETDPAGNPGYAVKNGL 1001
Query: 920 LYFQHRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKS 1099
+ +Q R I S K ++ EFH T + GH GI +TL R+AA FYW MR++V+ F+ S
Sbjct: 1002 ILYQGRIWISPTSHYKSLLLKEFHETPIGGHAGIIKTLKRLAANFYWSDMRKEVKQFIAS 1061
Query: 1100 CQVCQQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAH 1279
C +CQQ KYST P GLLQPLPIPS VW++++MDF+TGLP+S G++VILVVVD+ +K+ H
Sbjct: 1062 CVICQQTKYSTAKPGGLLQPLPIPSNVWEDISMDFVTGLPQSNGYSVILVVVDRFSKAVH 1121
Query: 1280 FGALPAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSA 1459
GALPAQF+A + AELF +MV KIHG P SI+SDRDPIF+S FW LFK +GT LR SS+
Sbjct: 1122 LGALPAQFTAYKVAELFINMVCKIHGLPRSIVSDRDPIFISKFWADLFKFSGTLLRMSSS 1181
Query: 1460 FHPQTDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFG 1639
+HPQTDGQTEV NR++EQYLR F +P W L WAE+ YNT Y+++ L+PFQ +FG
Sbjct: 1182 YHPQTDGQTEVTNRTIEQYLRAFVHAKPSIWFRFLPWAEYHYNTAYNTSSGLSPFQVMFG 1241
Query: 1640 RPPPSIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIG 1819
+PPPSIP Y S S+ A D LL++R +L+ L+ NL++AQ M A+ HRRE Y G
Sbjct: 1242 KPPPSIPSYAIGSSSVDACDLLLSDRAAILELLRKNLLKAQQVMKHNADAHRREVNYDAG 1301
Query: 1820 DKV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSV 1999
V V+LQPYRQT++ KL KR+YGPF ++E+ G V YKL+L S+IH VFH SV
Sbjct: 1302 TWVYVKLQPYRQTSLTGTKYNKLSKRFYGPFRIIERVGKVAYKLELPSYSKIHNVFHCSV 1361
Query: 2000 LKPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESST 2179
LKP +G+ T V LP + +NHP+ P+AI A + GK QVLVQW + ++
Sbjct: 1362 LKPHIGSIPTVVDDLPHDAVDNHPLVSPLAILATKEEFIDGKNQVQVLVQWEGLSPDETS 1421
Query: 2180 WGDLDQLQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMRKS 2359
W ++LQ + +LEDKV G M + T +G PE+ + + + P R
Sbjct: 1422 WESWNKLQAVY---NLEDKVGFDGEGIVMNSSTTIG---PEATIPIVGPETVQGRPKR-- 1473
Query: 2360 NRLKITPKWHKDYVMQQK 2413
+K+ K + DYV+ ++
Sbjct: 1474 -NIKLPIKLN-DYVLSKQ 1489
>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1474
Score = 754 bits (1948), Expect = 0.0
Identities = 386/761 (50%), Positives = 509/761 (66%), Gaps = 1/761 (0%)
Frame = +2
Query: 41 HHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGY 220
+ F +K SKCSFAQ S++YLGH+V A V DP K AM +WP P+ VKQLRGFLGL G+
Sbjct: 725 NEFCLKASKCSFAQTSIDYLGHIVSAEGVGPDPSKISAMVNWPPPTNVKQLRGFLGLTGF 784
Query: 221 YRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVET 400
YR+FVR YAS+AAPLT LL DAF WTE A AF LK+AM E PVL LP+F +F++ET
Sbjct: 785 YRKFVRNYASLAAPLTSLLKRDAFEWTERAQQAFEGLKRAMTEVPVLGLPNFDEKFILET 844
Query: 401 DASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFII 580
DAS +G+GAVL Q GHPI YFSK+ P+M ASTY++EL AI AVKKWR YLLG +F I
Sbjct: 845 DASGVGMGAVLMQSGHPICYFSKQFCPRMLQASTYVRELCAITTAVKKWRTYLLGNTFAI 904
Query: 581 RTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEP 760
TD +S++EL QV+ TPEQQ Y+ KL+GYS+ I Y+PG N VADALSRV
Sbjct: 905 YTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIIYKPGPQNRVADALSRV--------- 955
Query: 761 LSSGHHFQLESRPIWDFLDAIKSENSVNPELQE-LHQRIATDSSLQNFSVKEGILYFQHR 937
H + + P DFL K + +V+ E Q+ L Q A + F + G+L+F+ +
Sbjct: 956 -----HCLVLTIPQMDFLTTFKQQLAVDTEFQQFLAQVQAKPAEYSEFEIMNGLLFFKGK 1010
Query: 938 YVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQ 1117
I + S LKL ++ EFHA+ + GH GI RT R+ +W GMR DV FVKSC +CQQ
Sbjct: 1011 LFIPATSPLKLTLLEEFHASTIGGHSGIHRTYGRLQENVFWYGMRNDVTHFVKSCSICQQ 1070
Query: 1118 IKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPA 1297
K + +P GLLQPLPIP VW+++++DFI GLP + VI VVVD+L+K+AHFG+LP
Sbjct: 1071 TKPANHSPYGLLQPLPIPEKVWEDISLDFIVGLPSVQSHTVIFVVVDRLSKAAHFGSLPT 1130
Query: 1298 QFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTD 1477
F+A + A+LFA MV K+HG P SI+SDRDPIFLS FWQ+LFKL+GT LR S+A+HPQ+D
Sbjct: 1131 HFTAIKVADLFAKMVCKLHGMPRSIVSDRDPIFLSQFWQELFKLSGTKLRMSTAYHPQSD 1190
Query: 1478 GQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSI 1657
GQTE+VN+ L+QYLRCF ++P +W L WAE+ YNT H++ L+PFQ ++GRPPP++
Sbjct: 1191 GQTEIVNKVLQQYLRCFVHDKPNQWEQFLHWAEWHYNTAIHTSTGLSPFQIVYGRPPPAL 1250
Query: 1658 PPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VR 1837
Y S SIQA+D L +RD +LQ+LK L +AQ M ++A+ HR ++ +GD V V+
Sbjct: 1251 ADYIPGSSSIQAIDATLIDRDMMLQNLKNKLQKAQAIMKEQADQHRIPHKFKVGDLVFVK 1310
Query: 1838 LQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVG 2017
L+PYRQ +V KL KR+YGPF +++ G V ++L+L P SRIHPVFHVS LKP
Sbjct: 1311 LRPYRQNSVMGRRIHKLSKRFYGPFKLIKAIGDVAFELELPPTSRIHPVFHVSQLKPCF- 1369
Query: 2018 NEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQ 2197
+E + L LPLE N PV KP+A+ + K G E +VL+QW E +TW +
Sbjct: 1370 DETSEPLDLPLEALGNQPVIKPLAV-LDWKQNESG-EFVEVLIQWEGLFPEDATWEKYQE 1427
Query: 2198 LQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEI 2320
+Q +P LEDKV G D+ N + + + Q +I
Sbjct: 1428 IQSTYPTFDLEDKVNFD-GTWDVTNQVETDIEDMDMGQDDI 1467
>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1502
Score = 754 bits (1947), Expect = 0.0
Identities = 380/755 (50%), Positives = 501/755 (66%), Gaps = 1/755 (0%)
Frame = +2
Query: 50 YIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYRR 229
Y+KLSKCSF +EYLGHVV V D K +A+ +WP PS VKQLRGFLGL GYYRR
Sbjct: 760 YVKLSKCSFGVLEIEYLGHVVTGQGVSMDKDKVQAVVNWPTPSNVKQLRGFLGLTGYYRR 819
Query: 230 FVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDAS 409
F++ YA IA+PLTDLL +A++WTE A AF++LK A+ APVL LP+F F++ETDAS
Sbjct: 820 FIKSYAKIASPLTDLLKKEAYQWTEQAEVAFHQLKNAITTAPVLILPNFKEPFILETDAS 879
Query: 410 NIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRTD 589
IGIGAVL Q+GHPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG FIIRTD
Sbjct: 880 GIGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTD 939
Query: 590 HKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLSS 769
KS++ L +Q + TPEQQ ++ K +GY F IEY+PGK N ADALSRV
Sbjct: 940 QKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRVM----------- 988
Query: 770 GHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRYVIG 949
S P W LD ++ + +L+E+ Q A + +S++EG+LY++ R VI
Sbjct: 989 ---VMAWSEPKWQLLDQVRRALENDNQLREVMQNYAIGKAPVQYSMREGLLYWKQRLVIP 1045
Query: 950 SKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIKYS 1129
L K++ EFH + + GH GI RT+ARI A FYW M++D+ ++V C VCQQ K +
Sbjct: 1046 KNDDLLQKLLFEFHTSPIGGHAGITRTIARIKAQFYWPDMKKDIAEYVHKCVVCQQAKTT 1105
Query: 1130 TQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQFSA 1309
+P GLLQPLPIPS VW+++ MDFITGLP S G+ I+VVVD+LTKSAHF + +++
Sbjct: 1106 NTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRLTKSAHFIPMKTDYTS 1165
Query: 1310 TQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQTE 1489
AE F +VK+HG P SI+SDRD +F S FWQ LFK+ GT+L SSA+HPQTDGQTE
Sbjct: 1166 KTVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQHLFKMQGTSLAMSSAYHPQTDGQTE 1225
Query: 1490 VVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPPYR 1669
V+N++LE +LRCFT PK W ++ WAE+ YNT + +++ +TPF+AL+GR PP + Y
Sbjct: 1226 VLNKTLELFLRCFTFHNPKSWFKVMSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYE 1285
Query: 1670 RDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQPY 1849
A+ E L ERD++LQ LK NL +AQ M Q+A+ HRRE + +GD V V+LQPY
Sbjct: 1286 VQVDDPPALREELMERDQILQQLKTNLERAQQYMKQQADKHRREVSFKVGDLVLVKLQPY 1345
Query: 1850 RQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNEDT 2029
+Q +VA QKL RY+GPF V+ G V YKL L ++IHPVFHVS LKPF G
Sbjct: 1346 KQQSVALRKNQKLGMRYFGPFEVIACVGKVAYKLQLPENAKIHPVFHVSQLKPFHGTSQE 1405
Query: 2030 SVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQQH 2209
LPLPL + P+ +P I ++R K++ Q+ +QW E ++W DLD+LQ
Sbjct: 1406 QYLPLPLTMSDTGPIFQPATILQARTIVRGNKKVHQLQIQWDLNSPEEASWEDLDELQNK 1465
Query: 2210 FPNLHLEDKVVLQG-GESDMPNPTDLGLNHPESAQ 2311
FPN++LEDKVV +G G PN T++ L ESA+
Sbjct: 1466 FPNINLEDKVVFKGEGIVMRPNNTNI-LEASESAK 1499
>gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium pratense]
Length = 869
Score = 732 bits (1889), Expect = 0.0
Identities = 361/738 (48%), Positives = 490/738 (66%), Gaps = 2/738 (0%)
Frame = +2
Query: 68 CSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYRRFVRGYA 247
CSF ++YLGH V V D K + + +WP P+ +KQLRGFLGL GYYRRF++GYA
Sbjct: 103 CSFGMEEVDYLGHTVSGTGVAMDKDKVQTVLAWPQPTNIKQLRGFLGLTGYYRRFIKGYA 162
Query: 248 SIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDASNIGIGA 427
SIA+PLTDLL + F+WT +AT AF+KLK A+ APVL LP F + F +ETDAS G+GA
Sbjct: 163 SIASPLTDLLKKEGFKWTAEATMAFDKLKVAITTAPVLALPQFFLPFTIETDASGTGVGA 222
Query: 428 VLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRTDHKSIKE 607
VL+Q GHPI +FSKK+ P+MQ S Y +EL AI EA+ K+R YLLG F+IRTD KS++
Sbjct: 223 VLSQLGHPIAFFSKKMVPRMQKQSAYTRELFAITEAIAKFRHYLLGHKFVIRTDQKSLRS 282
Query: 608 LFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLSSGHHFQL 787
L Q + TPEQQ +I K +GY F IEY+PGK N ADALSRV
Sbjct: 283 LMDQSLQTPEQQAWIHKFIGYDFTIEYKPGKDNVAADALSRVC--------------LMA 328
Query: 788 ESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQN--FSVKEGILYFQHRYVIGSKSA 961
S P FLD ++ + +LQ L I T + F K G++Y+ ++ V+
Sbjct: 329 WSEPEIVFLDEVRRCTENDSQLQGL---INTSDPVHGHQFVRKNGLVYWNNKIVLPDDKN 385
Query: 962 LKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIKYSTQAP 1141
LK K++ EFH++ + GH GI RT+ARIAA F+W M++D++ FV++C +CQQ K+ T+AP
Sbjct: 386 LKTKLLLEFHSSPVGGHAGIARTIARIAAQFFWKNMKQDIKLFVQNCLICQQAKHDTRAP 445
Query: 1142 TGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQFSATQTA 1321
GLLQPLPIP VW+++ MDFITGLP S G+ VI+VV+D+LTK +HF L +++ A
Sbjct: 446 AGLLQPLPIPEQVWEDIAMDFITGLPPSNGYTVIMVVIDRLTKYSHFSPLKIDYNSKTVA 505
Query: 1322 ELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQTEVVNR 1501
E+F VVK+HG P SI+SDRD +F+S FW++LF+L GTTL SSA+HPQTDGQ+E +N+
Sbjct: 506 EVFMKTVVKLHGLPKSIVSDRDKVFISKFWKELFQLQGTTLSMSSAYHPQTDGQSEALNK 565
Query: 1502 SLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPPYRRDSV 1681
LE YLRC T + PK W L WAE+ YNT YH++L +TPFQAL+GR PP++ Y
Sbjct: 566 CLEMYLRCLTFQNPKSWFKALDWAEYWYNTAYHNSLGMTPFQALYGRTPPTLVRYTHSPT 625
Query: 1682 SIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQPYRQTT 1861
V + L ERD L+ +LK NL +AQ M +A+ HRR+ Q+ +G++V V+LQPYRQ +
Sbjct: 626 DTLDVQQQLMERDRLIATLKDNLKRAQQIMKNQADKHRRDAQFEVGEQVLVKLQPYRQNS 685
Query: 1862 VARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNEDTSVLP 2041
VA QKL RY+GPFT++EK G V YK+ L E++IHPVFH+S LK F G +P
Sbjct: 686 VALRKNQKLGMRYFGPFTIIEKVGKVAYKVQLPVEAKIHPVFHISQLKQFKGRATDPYIP 745
Query: 2042 LPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQQHFPNL 2221
LPL E P+ +P+A+ ++R I QVL++W +TW D+D++ +++PN
Sbjct: 746 LPLTTHELGPILQPIAVLQRRDIVRNEHAIQQVLIKWEGLNDTDATWEDVDEITENYPNF 805
Query: 2222 HLEDKVVLQGGESDMPNP 2275
+LEDKV ++G M P
Sbjct: 806 NLEDKVEVKGKGIAMEEP 823
>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
Length = 1853
Score = 759 bits (1959), Expect = 0.0
Identities = 371/731 (50%), Positives = 514/731 (70%), Gaps = 1/731 (0%)
Frame = +2
Query: 47 FYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYR 226
F +KLSKCSFAQNS+ YLGH+V A V DP+K EAM +WP P+T+KQLRGFLGL G+YR
Sbjct: 753 FILKLSKCSFAQNSISYLGHIVSAEGVGPDPEKIEAMVNWPPPTTLKQLRGFLGLTGFYR 812
Query: 227 RFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDA 406
+FV+ YA IA PLT+LL DAF+W+E A AF+ LK AM +APVL LP+F +F++ETDA
Sbjct: 813 KFVKDYAIIAQPLTELLKKDAFQWSEQAQVAFDHLKAAMTKAPVLALPNFEEDFMIETDA 872
Query: 407 SNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRT 586
S IG+GAVL Q HPI YFS+K PK+ AS Y++EL AI AVKKWR YLLGR F++ T
Sbjct: 873 SGIGMGAVLIQNNHPICYFSQKFCPKLMNASAYVRELCAITSAVKKWRTYLLGRKFVVHT 932
Query: 587 DHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLS 766
D +S++EL QV+ TPEQQ Y+ KL+GYS+ I+Y+PG N VADALSRV + ++ ++
Sbjct: 933 DQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIKYKPGTQNRVADALSRVHENFPSVMAIT 992
Query: 767 SGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATD-SSLQNFSVKEGILYFQHRYV 943
H W FL+ +++E + + E+++L ++A D +S NF + +G+LYF+ R
Sbjct: 993 IPH---------WKFLEKLQAEINQDSEVKDLMSKVANDPNSYPNFKIIKGLLYFKGRLY 1043
Query: 944 IGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIK 1123
I + S+ K ++ E HAT + GH GI+RT R+ FYWVG+++DV ++V SC CQQ K
Sbjct: 1044 IPASSSFKNILLEEIHATPVGGHSGIQRTYGRMKENFYWVGLKQDVVNYVNSCHTCQQTK 1103
Query: 1124 YSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQF 1303
T AP GLLQPLPIP +W++++MDFI GLP + + VI VVVD+ +K+AHFG LP F
Sbjct: 1104 DPTHAPYGLLQPLPIPKHIWEDISMDFIVGLPSFQHYTVIFVVVDRFSKAAHFGMLPTGF 1163
Query: 1304 SATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQ 1483
+A + AELF MV K+HG P SI+SDRDPIFLS FWQ+LF L+GT LR S+A+HPQ+DGQ
Sbjct: 1164 TAVKVAELFTTMVCKLHGMPHSIVSDRDPIFLSKFWQELFHLSGTKLRMSTAYHPQSDGQ 1223
Query: 1484 TEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPP 1663
TEVVN++L+QYLRCF +QPKRW + WAE+ YNT H++ +PFQ ++G+PPPS+P
Sbjct: 1224 TEVVNKTLQQYLRCFVHDQPKRWGKYIHWAEWHYNTAIHTSTGYSPFQVVYGKPPPSLPQ 1283
Query: 1664 YRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQ 1843
Y + ++A+D L+ R+ +LQ+LK L++AQ M A+ HR + GD V V+L+
Sbjct: 1284 YLAGTSQLEALDSELSNREIILQNLKKKLLKAQQNMKIYADQHRSPHTFKTGDLVYVKLR 1343
Query: 1844 PYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNE 2023
PYRQT++ KL KR+YGPF +L + G V ++L+L PES+IHPVFHVS LKP +
Sbjct: 1344 PYRQTSLPAQRTHKLSKRFYGPFKLLRQIGDVAFELELPPESKIHPVFHVSKLKP-CHDP 1402
Query: 2024 DTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQ 2203
+ L LP + +N P+ +P+A+ + G+ QVL+QW+ E +TW ++++
Sbjct: 1403 ASKPLVLPPDAVDNSPMVQPLAVLDWKE--EPGQTSPQVLIQWAGLYPEDATWESFEEIK 1460
Query: 2204 QHFPNLHLEDK 2236
+ +P+LHLEDK
Sbjct: 1461 KAYPHLHLEDK 1471
>gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 937
Score = 729 bits (1883), Expect = 0.0
Identities = 360/734 (49%), Positives = 491/734 (66%)
Frame = +2
Query: 50 YIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYRR 229
++KLSKCSF +EYLGH+V V D K +A+ +WP P VKQLRGFLGL GYYRR
Sbjct: 217 FVKLSKCSFGVLEIEYLGHMVTGQGVSMDKDKVQAVLNWPTPKNVKQLRGFLGLTGYYRR 276
Query: 230 FVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDAS 409
F++ YA IA+PLTDLL +A+ W + A AF +LK A+ APVL LP+F F++ETDAS
Sbjct: 277 FIKSYAKIASPLTDLLKKEAYAWNDLAELAFQQLKSAVTTAPVLALPNFHQPFILETDAS 336
Query: 410 NIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRTD 589
+GIGAVL Q+GHPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG FIIRTD
Sbjct: 337 GVGIGAVLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTD 396
Query: 590 HKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLSS 769
KS++ L +Q + TPEQQ ++ K +GY F IEY+PGK N ADALSR L L+
Sbjct: 397 QKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSR-------LMTLAW 449
Query: 770 GHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRYVIG 949
S P F++ +K + ++ E+ + A+ + ++++EG+LY++ R VI
Sbjct: 450 -------SEPQCQFIEQVKLALQNDNQMMEIMLKCASGKAPIQYTMREGLLYWKQRLVIP 502
Query: 950 SKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIKYS 1129
++ L K+++EFH + + GH GI RT+ARI + FYW M++D+ ++V++C VCQQ K +
Sbjct: 503 KQNELLHKVLYEFHTSPIGGHAGITRTMARIKSQFYWPDMKKDILEYVQNCVVCQQAKTT 562
Query: 1130 TQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQFSA 1309
+P GLLQPLPIPS VW+++ MDFITGLP S G+ I+VVVD+LTK AHF + +++
Sbjct: 563 NTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRLTKYAHFIPMRTDYTS 622
Query: 1310 TQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQTE 1489
AE F +VK+HG P SI+SDRD +F S FWQQLFKL GT+L SSA+HPQ+DGQTE
Sbjct: 623 RSVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTE 682
Query: 1490 VVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPPYR 1669
V+N+ LE +LRCF+ PK W +L WAE+ YNT + +++ +TPF+AL+GR PP + Y
Sbjct: 683 VLNKGLELFLRCFSFHNPKSWYKVLSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYE 742
Query: 1670 RDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQPY 1849
A+ E L ERD++LQ LK NL +AQ M ++A+ HR E +GD V V+LQPY
Sbjct: 743 AQVTDSPALQEELMERDKILQQLKINLERAQQYMKKQADKHRSEVNLQVGDLVLVKLQPY 802
Query: 1850 RQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNEDT 2029
RQ +V+ QKL RY+GPF ++ + G+V YKL L ++IHPVFHVS LKPF G
Sbjct: 803 RQQSVSLRKNQKLGMRYFGPFEIIARVGNVAYKLKLPDNAKIHPVFHVSQLKPFKGIAQD 862
Query: 2030 SVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQQH 2209
LPLPL E P+ +P+A ++R +++ Q+LVQW P+ +TW DLD LQ
Sbjct: 863 QYLPLPLTMSETGPIIQPIAALEARTIMRGMQKVHQILVQWDQMPVTEATWEDLDVLQDK 922
Query: 2210 FPNLHLEDKVVLQG 2251
FP L+LEDK+ G
Sbjct: 923 FPTLNLEDKIAFNG 936
>gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1478
Score = 746 bits (1927), Expect = 0.0
Identities = 384/780 (49%), Positives = 514/780 (65%), Gaps = 1/780 (0%)
Frame = +2
Query: 17 CSFGNFKHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLR 196
C F H FY+K KCSFAQ + YLGHVV AG V DP+K A+ WP+P +VK LR
Sbjct: 703 CVFELLAKHQFYLKPQKCSFAQQQIGYLGHVVSAGTVAPDPEKINAIMDWPVPHSVKTLR 762
Query: 197 GFLGLIGYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDF 376
GFLGL GYYR+FVR YAS+A+PLT LL DAF+W++ A +FN LKQA+ APVL LP+F
Sbjct: 763 GFLGLAGYYRKFVRNYASLASPLTSLLKKDAFQWSDSALDSFNALKQALTTAPVLALPNF 822
Query: 377 TMEFVVETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQY 556
+ F+V+TDASN +GAVL Q+GHP+ YFSK P++ ASTY++ELHAI AVK+WRQY
Sbjct: 823 SNTFIVQTDASNHAMGAVLLQQGHPLAYFSKMFCPRLAKASTYIRELHAITAAVKRWRQY 882
Query: 557 LLGRSFIIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVP 736
LLG FII+TDH+S+KEL QV+ TPEQQ Y+ KL+GY++ I+YRPG N ADALSR
Sbjct: 883 LLGNFFIIQTDHRSLKELLTQVIQTPEQQHYLSKLLGYNYEIQYRPGNTNLAADALSRAS 942
Query: 737 GDENALEPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSL-QNFSVKE 913
+ + L + P F++ ++ E S + EL ++I D SL F +
Sbjct: 943 --------VIVTNELYLLTVPNLLFMEELRKELSTDSVYLELCRKIQADPSLFPKFKLTN 994
Query: 914 GILYFQHRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFV 1093
G L + R I S K ++ E+H ++ AGH GI +T+ R++ FYW M++DV++ +
Sbjct: 995 GWLSYNGRIWISPNSRFKTLLLQEYHDSLSAGHAGISKTMKRLSENFYWEHMKQDVQNHI 1054
Query: 1094 KSCQVCQQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKS 1273
+ C +CQQ KYST P+GLLQPLPIP+ +W++++MDFITGLP SKG +VI VVVD+ +K
Sbjct: 1055 RHCTICQQTKYSTARPSGLLQPLPIPNHIWEDLSMDFITGLPLSKGHSVIFVVVDRFSKG 1114
Query: 1274 AHFGALPAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHS 1453
H GAL + F+A + AELF +V K HG P SI+SDRDPIF+S FW+ LFK +GT LR S
Sbjct: 1115 IHLGALSSGFTAYKVAELFVSIVCKHHGIPRSIVSDRDPIFISKFWRDLFKFSGTFLRMS 1174
Query: 1454 SAFHPQTDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQAL 1633
S++HPQTDGQTEV+NR++EQYLR F ++P WVTLL W E+ YNT+ HS +L+PFQ +
Sbjct: 1175 SSYHPQTDGQTEVMNRTIEQYLRAFVHDKPYNWVTLLPWVEYHYNTSTHSGSELSPFQVM 1234
Query: 1634 FGRPPPSIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYS 1813
FG+ PPSIP Y S SI+A D +L RDE+L L+ NL +AQ RM A+ HR+E +
Sbjct: 1235 FGKSPPSIPSYIAGSSSIEACDSVLQSRDEILTLLRKNLNKAQVRMKANADKHRKEVNFD 1294
Query: 1814 IGDKV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHV 1993
IG V V+LQPYRQ +++R KL KRYYGP+ + K G+V Y+L+L P ++IH VFHV
Sbjct: 1295 IGAWVYVKLQPYRQISLSRTKYHKLAKRYYGPYLISAKIGTVAYQLELPPHAKIHNVFHV 1354
Query: 1994 SVLKPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLES 2173
S+LK + G V LP +NHP+ P+AI + G LVQW +
Sbjct: 1355 SLLKLYEGPAPQQVDQLPAFSVDNHPIVSPLAILNFRTQMVDGVPTRFALVQWDGLLPDD 1414
Query: 2174 STWGDLDQLQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMR 2353
++W ++L+ + LEDKV L GG M + + LG E+A + I EE P R
Sbjct: 1415 TSWEPWNELKHTY---DLEDKVDLDGGSIVMDSTSTLG---QETAHKDKI----EERPKR 1464
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 747 bits (1929), Expect = 0.0
Identities = 388/792 (48%), Positives = 517/792 (65%), Gaps = 8/792 (1%)
Frame = +2
Query: 35 KHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLI 214
K H + +LSKCSF ++YLGH V V + K +A+ WP P+ VKQLRGFLGL
Sbjct: 775 KQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLT 834
Query: 215 GYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVV 394
GYYRRF++ YA+IA PLTDLL D+F W +A AAF KLK+AM EAPVL LPDF+ F++
Sbjct: 835 GYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFIL 894
Query: 395 ETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSF 574
ETDAS IG+GAVL Q GHPI YFSKKL P+MQ S Y +EL AI EA+ K+R YLLG F
Sbjct: 895 ETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKF 954
Query: 575 IIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENAL 754
IIRTD +S+K L Q + TPEQQ ++ K +GY F+IEY+PGK N ADALSR+
Sbjct: 955 IIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRM------- 1007
Query: 755 EPLSSGHHFQLE-SRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQ 931
F L S P FL+ +++ +P L++L + + +++V+EG+LY++
Sbjct: 1008 --------FMLAWSEPHSIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWK 1059
Query: 932 HRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVC 1111
R VI ++ + KI+ E+H++ + GH GI RTLAR+ A FYW M+ DV+ +++ C +C
Sbjct: 1060 DRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLIC 1119
Query: 1112 QQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGAL 1291
QQ K + P GLLQPLPIP VW++V MDFITGLP S G +VI+VV+D+LTK AHF L
Sbjct: 1120 QQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPL 1179
Query: 1292 PAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQ 1471
A +++ AE F +VK+HG P SI+SDRD +F S FWQ LFKL GTTL SSA+HPQ
Sbjct: 1180 KADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQ 1239
Query: 1472 TDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPP 1651
+DGQ+EV+N+ LE YLRCFT E PK WV L WAEF YNT YH +L +TPF+AL+GR PP
Sbjct: 1240 SDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPP 1299
Query: 1652 SIPPYRRDSVSIQ---AVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGD 1822
++ R + SI V E L +RD LL LK NL +AQ M ++A+ R + + IGD
Sbjct: 1300 TL---TRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGD 1356
Query: 1823 KV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVL 2002
+V V+LQPYRQ + QKL RY+GPF VL K G V YKL+L +RIHPVFHVS L
Sbjct: 1357 EVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQL 1416
Query: 2003 KPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTW 2182
KPF G LPLPL E PV +P+ I A ++R +I Q+LVQW + + +TW
Sbjct: 1417 KPFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATW 1476
Query: 2183 GDLDQLQQHFPNLHLEDKVVLQGGESDMPNPTDLG--LNH--PESAQHEIISQAQEEEPM 2350
D++ ++ +P +LEDKVV + GE ++ N G +N+ S++ + ++ + E +
Sbjct: 1477 EDIEDIKASYPTFNLEDKVVFK-GEGNVTNGMSRGEKVNNTAESSSERGLHNKLADFEEL 1535
Query: 2351 RKSNRLKITPKW 2386
+ R K P W
Sbjct: 1536 GRGKREK-KPSW 1546
>gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1258
Score = 736 bits (1900), Expect = 0.0
Identities = 375/791 (47%), Positives = 514/791 (64%), Gaps = 3/791 (0%)
Frame = +2
Query: 41 HHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGY 220
+ Y+KLSKCSF +EYLGHVV V D K +A+ WP P +KQLRGFLGL GY
Sbjct: 481 NQLYVKLSKCSFGVLEIEYLGHVVSGEGVSMDKTKIQAVVDWPPPKNIKQLRGFLGLTGY 540
Query: 221 YRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVET 400
YRRF++ YA IA+PLTDLL +A+ WT +AF KLK A+ APVL LPDFT FV+ET
Sbjct: 541 YRRFIQSYAKIASPLTDLLKKEAYTWTSQEESAFQKLKHAITTAPVLALPDFTKPFVLET 600
Query: 401 DASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFII 580
DAS IGIGAVL Q+GHPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG FII
Sbjct: 601 DASGIGIGAVLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLLGHKFII 660
Query: 581 RTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEP 760
RTD KS++ L +Q + TP+QQ ++ + +GY F IEY+PGK N ADALSRV +
Sbjct: 661 RTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFSIEYKPGKENVAADALSRV------MTM 714
Query: 761 LSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRY 940
S ++L + A+K ++++ +Q+ Q AT+S +++VK+ +L+++HR
Sbjct: 715 AWSEPQYKL----LHQIRAALKQDSTLLGIMQKCVQNNATNS---HYTVKDELLFWKHRI 767
Query: 941 VIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQI 1120
VI S L ++++E H + + GH G+ RTLAR+ + FYW M+ D+ D+V++C +CQ+
Sbjct: 768 VIPKNSELIKQVLYELHTSPIGGHAGMARTLARVKSQFYWPDMKTDIADYVQNCAICQKA 827
Query: 1121 KYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQ 1300
K + P GLLQPLPIPS VW++V MDFITGLP S+G+ ILVV+D+LTK AHF L
Sbjct: 828 KTTNTLPAGLLQPLPIPSQVWEDVAMDFITGLPSSQGYTTILVVIDRLTKYAHFIPLKTD 887
Query: 1301 FSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDG 1480
+S+ AE D +VK+HG P SI+SDRD +F S+FWQQLFKL GTTL SSA+HPQ+DG
Sbjct: 888 YSSKIVAEAVMDNIVKLHGMPKSIVSDRDKVFTSSFWQQLFKLQGTTLAMSSAYHPQSDG 947
Query: 1481 QTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIP 1660
Q+EV+N++LE +LRCFT + PK W L W+EF YNT + +++ +TPF+AL+GR PP++
Sbjct: 948 QSEVLNKTLELFLRCFTFDNPKSWCKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPALI 1007
Query: 1661 PYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRL 1840
Y + + E L ERD ++Q LK NL +AQ M ++A+ HR + + +GD V V+L
Sbjct: 1008 RYETQANDPPTLQEKLMERDRIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDLVLVKL 1067
Query: 1841 QPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGN 2020
QPYRQ +VA QKL RY+GPF V+ K G V YKL L ++IHPVFHVS LKPF G+
Sbjct: 1068 QPYRQQSVALRKNQKLGMRYFGPFEVIAKVGEVAYKLKLPEHAKIHPVFHVSQLKPFKGD 1127
Query: 2021 EDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQL 2200
+PLPL + P+ +P+++ A ++R + I QVL+QW +TW D+D L
Sbjct: 1128 NQEQYMPLPLSMTDTGPMIQPVSVLATRTIIRGAQRIQQVLIQWDQYSTAEATWEDVDAL 1187
Query: 2201 QQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPM---RKSNRLK 2371
Q FP +LEDKV G M + L ESA+ + + M R+ R++
Sbjct: 1188 QSKFPAFNLEDKVAFIGDGIVMSPMEENILQEGESAKEGLNDMHERNSVMMGPRRGKRVR 1247
Query: 2372 ITPKWHKDYVM 2404
T K + Y +
Sbjct: 1248 KTSKRLEGYAL 1258
>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1240
Score = 734 bits (1895), Expect = 0.0
Identities = 368/734 (50%), Positives = 491/734 (66%)
Frame = +2
Query: 50 YIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYRR 229
++KLSKCSF + +EYLGH+V V D K +A+ +W P+ VKQLRGFLGL GYYRR
Sbjct: 485 FVKLSKCSFGVSEIEYLGHMVTGQGVSMDRDKVQAVLNWSTPTNVKQLRGFLGLTGYYRR 544
Query: 230 FVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDAS 409
F++ YA IAAPLTDLL +++RW + A AF +LK+A+ APVL LP+F F++ETDAS
Sbjct: 545 FIKSYAKIAAPLTDLLKKESYRWNDQADIAFQQLKEAVTSAPVLALPNFHKPFILETDAS 604
Query: 410 NIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRTD 589
+GIGAVL Q HPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG FIIRTD
Sbjct: 605 GVGIGAVLHQDNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHRFIIRTD 664
Query: 590 HKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLSS 769
KS++ L Q + TPEQQ ++ K +GY F IEY+PGK N ADALSR L L+
Sbjct: 665 QKSLRSLMDQSLQTPEQQEWLHKFLGYDFVIEYKPGKENLAADALSR-------LMTLAW 717
Query: 770 GHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRYVIG 949
S P ++F +K + L E+ Q+ + N++V+EGILY++HR VI
Sbjct: 718 -------SEPQYNFTQQVKEAIQQDDNLLEIIQKCLQGLAPTNYTVREGILYWKHRMVIP 770
Query: 950 SKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIKYS 1129
K+AL +I+ EFH + + GH G+ RTLARI + FYW M++D+ D+V++C VCQQ K +
Sbjct: 771 PKAALIQQILEEFHTSPIGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTT 830
Query: 1130 TQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQFSA 1309
P GLLQPLPIPS VW+++ MDFITGLP S G+ I+VVVD+LTK AHF A+ +++
Sbjct: 831 NTLPAGLLQPLPIPSQVWEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAHFIAMKTDYTS 890
Query: 1310 TQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQTE 1489
AE F VVK+HG P SI+SDRD +F S FWQ LFKL GTTL +SA+HPQ+DGQTE
Sbjct: 891 KSVAEAFMHNVVKLHGMPKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSAYHPQSDGQTE 950
Query: 1490 VVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPPYR 1669
V+N+ LE YLRCF+ PK W +L W+EF YNT + +++ +TPF+AL+GR PP + Y
Sbjct: 951 VLNKGLELYLRCFSFNNPKSWFKMLSWSEFWYNTAFQTSIGMTPFKALYGRDPPYLTRYV 1010
Query: 1670 RDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQPY 1849
+ + E L ERD++LQ LK NL++AQ M ++A+ HR + IGD V V+LQPY
Sbjct: 1011 AQASDPPTLQEELMERDKILQQLKDNLIRAQQYMKKQADKHRSDISLKIGDLVLVKLQPY 1070
Query: 1850 RQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNEDT 2029
RQ +VA QKL RY+GPF ++ + G V YKL L +++IHPVFHVS LKPF G D
Sbjct: 1071 RQHSVALRKNQKLGLRYFGPFEIIARVGEVAYKLKLPDDAKIHPVFHVSQLKPFKGVADE 1130
Query: 2030 SVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQQH 2209
LPLPL + P +P+ + V+R ++I QVL+QW P +TW D+ +Q+
Sbjct: 1131 QYLPLPLTMTDIGPSIQPIDVLQVRTVIRGSQQIHQVLIQWDQYPAAQATWEDITTIQEK 1190
Query: 2210 FPNLHLEDKVVLQG 2251
FP+L+LEDKV G
Sbjct: 1191 FPSLNLEDKVAFNG 1204
>gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pratense]
Length = 843
Score = 720 bits (1859), Expect = 0.0
Identities = 354/744 (47%), Positives = 488/744 (65%), Gaps = 1/744 (0%)
Frame = +2
Query: 23 FGNFKHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGF 202
F FY+K SKC AQ +EYLGH++ V+ DP K AM WP+P+++ LRGF
Sbjct: 75 FSTLLSAQFYLKQSKCLLAQRKLEYLGHIISGKGVQVDPSKISAMVDWPVPTSITSLRGF 134
Query: 203 LGLIGYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTM 382
LGL G+YR+F+R YA+IA PLT LL DAF WTE+A AFN LKQAM +AP+L P+F +
Sbjct: 135 LGLTGFYRKFIRNYAAIATPLTRLLRKDAFNWTEEAQLAFNSLKQAMTKAPLLASPNFNI 194
Query: 383 EFVVETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLL 562
F++ETDAS I +GAVL Q HPI +FSK ++ +STY++ELHAI AVKKWRQYLL
Sbjct: 195 PFILETDASGIAMGAVLMQNNHPIAFFSKPFCQRLLNSSTYVRELHAITTAVKKWRQYLL 254
Query: 563 GRSFIIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGD 742
G FII TDHKS+K+L QV+ TPEQQ+Y+ KL+G+ F I+Y+ G N VADALSR+
Sbjct: 255 GHHFIIFTDHKSLKQLISQVIQTPEQQVYLSKLLGFDFTIQYKAGSTNVVADALSRITPS 314
Query: 743 ENALEPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATD-SSLQNFSVKEGI 919
+ L L + P + FL+ +KS+ S E Q+L IA +S + + +
Sbjct: 315 ASCL----------LLTVPHFVFLNELKSQLSTTQEFQQLKLAIAQQPASYSDNEEHQDL 364
Query: 920 LYFQHRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKS 1099
++F+ + + +LK +I+HEFH + ++GH G+ +T R+ A F+W GMR+D+ F+
Sbjct: 365 IFFKKKIWLPRDFSLKDRILHEFHNSPISGHMGVDKTFHRLQANFFWQGMRQDIRSFIAK 424
Query: 1100 CQVCQQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAH 1279
C VCQ KY T+ P GLLQPLP+PS +W+++++DFITGLP S G+ I VVVD+ +K AH
Sbjct: 425 CSVCQSTKYETKKPAGLLQPLPVPSGIWEDLSLDFITGLPPSHGYTTIFVVVDRFSKGAH 484
Query: 1280 FGALPAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSA 1459
F ALP ++A + A+LF D + K HG P S++SDRDP+F+S FW++LFKL+GT LR S+A
Sbjct: 485 FSALPTTYTAYKVAQLFLDTICKHHGMPRSLVSDRDPVFISQFWRELFKLSGTQLRMSTA 544
Query: 1460 FHPQTDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFG 1639
+HP+TDGQTEV+NRSLEQYLR F +P W T L AE+SYNT+ HSA +PF ++G
Sbjct: 545 YHPETDGQTEVLNRSLEQYLRAFVHHKPSLWFTFLSLAEWSYNTSKHSATGYSPFHVVYG 604
Query: 1640 RPPPSIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIG 1819
+ P SIP Y + I+AVD +LAER LQ L+ L++ Q+ M + A+ RR ++++G
Sbjct: 605 KDPVSIPQYVLGTSPIEAVDSMLAERQAFLQFLRRKLLKVQSHMKEIADKKRRHVEFNVG 664
Query: 1820 DKV*VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSV 1999
D V ++L+PYRQ ++ KL KRY+GP+ +L+K G V YKLDL S+IHPVFH S+
Sbjct: 665 DFVYLKLRPYRQRSITLASYNKLSKRYFGPYKILQKIGPVAYKLDLPSTSKIHPVFHCSL 724
Query: 2000 LKPFVGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESST 2179
LK G+ + LP ++ P+ +P+AI VLVQW PLE ++
Sbjct: 725 LKLHQGDLPAAHAELPPSTIDHQPIIEPLAIVDTKMDTATDPPTRMVLVQWLGLPLEETS 784
Query: 2180 WGDLDQLQQHFPNLHLEDKVVLQG 2251
W D LQ + HLEDKV G
Sbjct: 785 WETWDDLQATY---HLEDKVTFPG 805
>gb|OMO81561.1| reverse transcriptase [Corchorus capsularis]
Length = 1523
Score = 742 bits (1915), Expect = 0.0
Identities = 369/790 (46%), Positives = 519/790 (65%), Gaps = 1/790 (0%)
Frame = +2
Query: 44 HFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYY 223
H++ K SKCSFAQ S++YLGH++ V D K +A+ +WP+P+ +K+LR FLGL GYY
Sbjct: 750 HYFAKFSKCSFAQGSVDYLGHIISGLGVAVDHSKIDAILAWPVPTFIKKLRVFLGLTGYY 809
Query: 224 RRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETD 403
R+FVRGYAS+AAPLTDLL D F W+ +AT AF LK +V APVL +PDF+ FV+ETD
Sbjct: 810 RKFVRGYASLAAPLTDLLKKDNFIWSAEATKAFESLKHVLVTAPVLAIPDFSQPFVLETD 869
Query: 404 ASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIR 583
AS IGAVL+Q GHPI YFS+KL P+MQ AS Y +E+ AI E+VKKWRQYLLGR F+I
Sbjct: 870 ASMTAIGAVLSQHGHPIAYFSRKLNPQMQTASAYAREMFAITESVKKWRQYLLGRPFLIY 929
Query: 584 TDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPL 763
TD +S++ L Q + TPEQQ ++ KL+GY + I Y+ G N VADALSR ++ L +
Sbjct: 930 TDQQSLRNLMNQTIQTPEQQRWLAKLLGYQYTILYKLGVQNKVADALSRSFPEQGELNAI 989
Query: 764 SSGHHFQLESRPIWDFLDAIKSENSVNPE-LQELHQRIATDSSLQNFSVKEGILYFQHRY 940
S P + FL ++ + +P Q + + + V++G+L R
Sbjct: 990 SG---------PTFPFLTQLRDYYANDPHGKQHFNDVKEHPNKFPDLLVQDGLLLRHGRI 1040
Query: 941 VIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQI 1120
VI L+ +++ E+H T+ GH G+ +TL+R+A+ F+W MR+ + +F+ +C+ CQ++
Sbjct: 1041 VIPENHPLQQQLLFEYHCTLTGGHAGVAKTLSRLASNFFWSNMRKTMANFISTCRTCQEV 1100
Query: 1121 KYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQ 1300
K GLLQPLPIP+ +W ++ MDFIT LP S G I V+VD+L+K AHF A+PA
Sbjct: 1101 KCLPTKQAGLLQPLPIPTHIWQDIAMDFITHLPFSNGKTTIWVIVDRLSKYAHFLAIPAH 1160
Query: 1301 FSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDG 1480
+A Q A LF+ + K+HG P SI+SDRDPIF+S+FW++LF+L GT L HSSA+HPQ+DG
Sbjct: 1161 TTAPQLAALFSQEIGKLHGLPRSIVSDRDPIFISSFWKELFRLQGTKLNHSSAYHPQSDG 1220
Query: 1481 QTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIP 1660
Q+EV+NR LE YLRCF + P+ W + WAE+SYNT HSA+ +TPF+A++G PP++
Sbjct: 1221 QSEVLNRCLETYLRCFAGDNPRSWSKIFHWAEWSYNTALHSAINMTPFEAVYGYAPPTVA 1280
Query: 1661 PYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRL 1840
Y I +D+ L ER LL LK NL +AQNRM +A+ HR+E+ + G+ V V+L
Sbjct: 1281 SYLPGPSKIAQLDDCLVERQTLLARLKVNLARAQNRMKMQADRHRKEKHFEEGEWVWVKL 1340
Query: 1841 QPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGN 2020
QPYRQ +V + QKL K+Y+GPF ++++ G+V Y+L L +SRIHPVFHVS+LK + GN
Sbjct: 1341 QPYRQQSVVKRTTQKLAKKYFGPFQIIKRVGTVAYELKLPADSRIHPVFHVSLLKAYRGN 1400
Query: 2021 EDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQL 2200
D + PLP E+ PV +P + +V + + + Q+LV+W + P +TW LD +
Sbjct: 1401 LDINPTPLPALAIEDQPVLEPEVVLKTREVKYQDQNLPQILVKWKNLPEAEATWEWLDDV 1460
Query: 2201 QQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMRKSNRLKITP 2380
Q ++P HLEDKVV SD + TD L + +E SQ E PMR+ NR + P
Sbjct: 1461 QTNYPAFHLEDKVV-----SDRES-TDTSL---APSPNEPSSQDNSEAPMRRGNRARNAP 1511
Query: 2381 KWHKDYVMQQ 2410
WH D++ Q+
Sbjct: 1512 PWHVDFIRQR 1521
>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1510
Score = 740 bits (1910), Expect = 0.0
Identities = 390/794 (49%), Positives = 524/794 (65%), Gaps = 6/794 (0%)
Frame = +2
Query: 41 HHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGY 220
H F +K SKCSFAQ+S++YLGH+V A V DP K EAM SWP+PS VKQLRGFLGL G+
Sbjct: 731 HEFCLKQSKCSFAQSSIDYLGHIVSAEGVGPDPTKIEAMVSWPVPSNVKQLRGFLGLTGF 790
Query: 221 YRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVET 400
YR+F+ YASIAAPLT LL DAF WT+ A AF+ LK+AM EAPVL LP+F +F++ET
Sbjct: 791 YRKFICKYASIAAPLTALLKRDAFIWTDAAQQAFDMLKRAMSEAPVLSLPNFEDQFILET 850
Query: 401 DASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFII 580
DAS +G+GAVL QKGHPI YFSK+ P+M ASTY++EL AI AVKKWR YLLG +FII
Sbjct: 851 DASGMGMGAVLIQKGHPICYFSKQFCPRMLVASTYVRELCAITTAVKKWRTYLLGNTFII 910
Query: 581 RTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEP 760
TD +S++EL QV+ TPEQQ Y+ KL+GYS+ I Y+PG N VADALSRV
Sbjct: 911 YTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIMYKPGPQNRVADALSRV--------- 961
Query: 761 LSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQ-NFSVKEGILYFQHR 937
H + P DFL +K + + E Q+L + + F + + +L+F+ +
Sbjct: 962 -----HCLAITVPHLDFLHTLKEQLVQDDEFQQLLTNVKENPDAHMGFEILDDLLFFKGK 1016
Query: 938 YVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQ 1117
I S S LK+ ++ EFH++ + GH GI RT R+ +W GMR DV FVKSC +CQQ
Sbjct: 1017 LFIPSNSPLKVTLLEEFHSSTIGGHSGIHRTFGRLQENVFWHGMRNDVTQFVKSCAICQQ 1076
Query: 1118 IKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPA 1297
K T +P GLLQPLPIP VW+++++DF+ GLP + V+LVVVD+L+K+AHFG LP
Sbjct: 1077 TKPPTHSPYGLLQPLPIPDKVWEDISLDFVVGLPSFQTHTVVLVVVDRLSKAAHFGLLPT 1136
Query: 1298 QFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTD 1477
F+A + A+LFA MV K+HG P SI+SDRDPIFLS+FWQ+LF+L+GT LR S+A+HPQ+D
Sbjct: 1137 HFTAAKVADLFAKMVCKLHGMPRSIVSDRDPIFLSHFWQELFRLSGTKLRMSTAYHPQSD 1196
Query: 1478 GQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSI 1657
GQTE VN+ L+QYLRCF ++PK+W L WAE+ YNT H++ ++P++ ++GRPPP++
Sbjct: 1197 GQTENVNKVLQQYLRCFVHDKPKQWGHYLHWAEWHYNTAIHTSTGISPYEVVYGRPPPTL 1256
Query: 1658 PPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VR 1837
Y S +QAVD L ERD +++ LK L++AQN M + A+L R Q+ +GD V V+
Sbjct: 1257 ADYVPGSSKLQAVDATLTERDIVIEVLKNKLLKAQNTMKEYADLKRIPHQFKVGDWVFVK 1316
Query: 1838 LQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVG 2017
L+PYRQ +V KL KR+YGPF ++ G V ++L+L SRIHPVFHVS LKP
Sbjct: 1317 LRPYRQNSVLGRRFHKLSKRFYGPFKLVRAIGEVAFELELPDTSRIHPVFHVSQLKPCF- 1375
Query: 2018 NEDTSVLP--LPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDL 2191
D +V+P LP E +N P P+AI G++ + LVQW E +TW +
Sbjct: 1376 --DNTVVPLALPPETVDNQPCITPIAILDWRTNEENGQQ--EALVQWEGLFPEDATWENY 1431
Query: 2192 DQLQQHFPNLHLEDKVVLQGGESDMPNPTDLGLNHPESAQHEIISQAQEEEPMRKSNRLK 2371
L+ +P ED V L + D+ N D+GL+ E Q E +Q EEE + ++K
Sbjct: 1432 QDLKNSYPTFDHEDMVSLD-EQRDVMNQNDMGLD--EEIQ-ENWAQENEEEVLGHQPKVK 1487
Query: 2372 ---ITPKWHKDYVM 2404
+ PK D+V+
Sbjct: 1488 RKIVRPKHLDDFVI 1501
>gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
Length = 1510
Score = 738 bits (1906), Expect = 0.0
Identities = 361/740 (48%), Positives = 504/740 (68%)
Frame = +2
Query: 41 HHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGY 220
H Y K+SKCSF +EYLGHVV V + K +A+ WP+P T+KQLRGFLGL GY
Sbjct: 727 HELYAKMSKCSFGLEQVEYLGHVVSGDGVSMETSKVQAVIDWPVPKTIKQLRGFLGLTGY 786
Query: 221 YRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVET 400
YRRF++GYASIA PLTDLL D F+W+ +A AAF LKQA+ APVL LPDF+ FV+ET
Sbjct: 787 YRRFIQGYASIANPLTDLLKKDNFKWSNEADAAFIALKQAITTAPVLSLPDFSQPFVLET 846
Query: 401 DASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFII 580
DAS GIGAVL+Q HPI +FSKKL +M S Y +E +AI EA+ K+R YLLG FII
Sbjct: 847 DASGSGIGAVLSQNKHPIAFFSKKLSNRMTKQSAYTREFYAITEAIAKFRHYLLGHRFII 906
Query: 581 RTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEP 760
RTD KS+K L Q + TPEQQ ++ K +GY F IEY+PG N ADALSR +A+
Sbjct: 907 RTDQKSLKSLLDQTLQTPEQQAWLHKFLGYDFSIEYKPGTENLAADALSRSFFMASAVTA 966
Query: 761 LSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRY 940
H + A+ S+ ++ P L Q A + +S +G+L+++ R
Sbjct: 967 SDLVHQIKA----------ALGSDTALQPILTAHSQGKALSAP---YSFLDGLLFWKGRI 1013
Query: 941 VIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQI 1120
V+ + A++ +I+ EFH++ L GH GI RT AR+AA F+W GM +D+++FV+ C VCQQ
Sbjct: 1014 VVPNVPAIQNQILQEFHSSPLGGHSGIARTFARVAAQFFWPGMNKDIKNFVQQCCVCQQA 1073
Query: 1121 KYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQ 1300
K +T P GLLQPLPIP+ +W++++MDFI GLP ++G+ VI V+VD+L+K AHF L +
Sbjct: 1074 KTATVLPAGLLQPLPIPTQIWEDISMDFIVGLPPAEGYTVIFVIVDRLSKYAHFAPLKSD 1133
Query: 1301 FSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDG 1480
F++ + A++F VVK+HGFP+SI+SDRD +F S FWQ L KL+GTTL+ S+A+HPQ+DG
Sbjct: 1134 FNSKRVADVFLHTVVKLHGFPNSIVSDRDKVFTSTFWQHLLKLSGTTLKLSTAYHPQSDG 1193
Query: 1481 QTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIP 1660
QTE +N+ LE YLRCFT E+PK W+ L WAEF YNT++H + +++PF+ ++GR PP++
Sbjct: 1194 QTEALNKCLEMYLRCFTHEKPKDWIKFLPWAEFWYNTSFHHSAQMSPFKVVYGRDPPTLV 1253
Query: 1661 PYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRL 1840
Y + ++ E+L +RD +L LK NL+ AQ RM + A+ R +++ G+ V V+L
Sbjct: 1254 KYSHSATDPPSIQEMLLQRDRVLAQLKVNLMLAQQRMKKYADQKRLHKEFVEGEMVLVKL 1313
Query: 1841 QPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGN 2020
QPYRQ ++A QKL RY+GPF + ++ GSV YKL L ++IHPVFH+S LK F G
Sbjct: 1314 QPYRQHSLALRKNQKLGLRYFGPFPIQKRIGSVAYKLLLPDYAKIHPVFHISQLKQFRGV 1373
Query: 2021 EDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQL 2200
DT +PLPL PV +P+ + + +++ GK + QVLVQW ++++TW DLD+L
Sbjct: 1374 TDTVYVPLPLTTAVEGPVVQPIQVLSVRDIIQAGKLVRQVLVQWEGFGVDAATWEDLDKL 1433
Query: 2201 QQHFPNLHLEDKVVLQGGES 2260
+Q +PN++LEDKV+ +GG S
Sbjct: 1434 EQSYPNINLEDKVIAKGGSS 1453
>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
Length = 1531
Score = 739 bits (1907), Expect = 0.0
Identities = 367/740 (49%), Positives = 492/740 (66%), Gaps = 1/740 (0%)
Frame = +2
Query: 35 KHHHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLI 214
K + Y+KLSKCSF +EYLGHVV V D K + + WP P +KQLRGFLGL
Sbjct: 752 KDNELYVKLSKCSFGVLEIEYLGHVVSGEGVYMDKSKIQVVVDWPSPKNIKQLRGFLGLT 811
Query: 215 GYYRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVV 394
GYYRRF++ YA IA+PLTDLL DA+ W + AAF KLK A+ APVL LPDFT F++
Sbjct: 812 GYYRRFIQSYAKIASPLTDLLKKDAYTWNSEMEAAFQKLKHAITTAPVLALPDFTKPFIL 871
Query: 395 ETDASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSF 574
ETDAS IGIGAVL Q+GHPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG F
Sbjct: 872 ETDASGIGIGAVLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLLGHKF 931
Query: 575 IIRTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENAL 754
IIRTD KS++ L +Q + TP+QQ ++ + +GY F IEY+PGK N ADALSRV
Sbjct: 932 IIRTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFTIEYKPGKENVAADALSRVMT----- 986
Query: 755 EPLSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDS-SLQNFSVKEGILYFQ 931
S P + L I+ + L E+ ++ A +S S N+++K+ +L+++
Sbjct: 987 ---------LAWSEPQYKLLHQIRVALKQDSTLLEIMEKCAQNSDSNSNYTIKDDLLFWK 1037
Query: 932 HRYVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVC 1111
HR VI S L+ ++++E H + + GH GI RTLAR+ A FYW+ M+ D+ +V++C +C
Sbjct: 1038 HRIVIPKHSELRQQVLYELHTSPIGGHAGIARTLARVKAQFYWLDMKTDIAKYVQNCVIC 1097
Query: 1112 QQIKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGAL 1291
Q+ K + P GLLQPLPIPS VW++V MDFITGLP S G+ ILVV+D+LTK AHF L
Sbjct: 1098 QKAKTTNTPPAGLLQPLPIPSQVWEDVAMDFITGLPSSHGYTTILVVIDRLTKYAHFIPL 1157
Query: 1292 PAQFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQ 1471
+S+ AE F D +VK+HG P SI+SDRD +F S+FWQQLFKL GT+L SSA+HPQ
Sbjct: 1158 KTDYSSKIVAEAFMDNIVKLHGMPKSIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQ 1217
Query: 1472 TDGQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPP 1651
+DGQ+EV+N++LE +LRCFT E PK W L W+EF YNT + +++ +TPF+AL+GR PP
Sbjct: 1218 SDGQSEVLNKTLELFLRCFTFENPKSWCKALAWSEFWYNTAFQTSIGMTPFKALYGRDPP 1277
Query: 1652 SIPPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV* 1831
+I Y + + E L ERD ++Q LK NL +AQ M ++A+ HR + + +GD V
Sbjct: 1278 AIIRYEIQASDSPTLQEKLMERDRIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDWVL 1337
Query: 1832 VRLQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPF 2011
V+LQPYRQ +VA QKL +Y+GPF V+ K G V YKL L ++IHPVFHVS LKPF
Sbjct: 1338 VKLQPYRQQSVALRKNQKLGMKYFGPFEVIAKVGEVAYKLKLPDHAKIHPVFHVSQLKPF 1397
Query: 2012 VGNEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDL 2191
G+ +PLPL + P+ +P+A+ A ++R + I QVL+QW P+ +TW D+
Sbjct: 1398 KGDNQEQYMPLPLSMTDIGPMIQPVAVLATRTIIRCAQRIQQVLIQWDQYPIAEATWEDM 1457
Query: 2192 DQLQQHFPNLHLEDKVVLQG 2251
LQ+ FP +LEDKV G
Sbjct: 1458 VALQRKFPTFNLEDKVAFIG 1477
>gb|OMO55704.1| reverse transcriptase [Corchorus capsularis]
Length = 2083
Score = 751 bits (1939), Expect = 0.0
Identities = 375/746 (50%), Positives = 506/746 (67%), Gaps = 1/746 (0%)
Frame = +2
Query: 47 FYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYR 226
FY KLSKCSFAQ+S++YL H++ V+ DP K EA+ +WP PS VK LRGFLGL GYYR
Sbjct: 761 FYAKLSKCSFAQSSIDYLEHIISDQGVQVDPSKIEAVMAWPQPSNVKSLRGFLGLTGYYR 820
Query: 227 RFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDA 406
+FV YA+IAAPLTDLL + AF WT+ A+ F KLKQA+ P L LPDF+ F V TDA
Sbjct: 821 KFVAHYATIAAPLTDLLKSKAFHWTQSASDVFEKLKQALTSTPCLALPDFSKPFEVTTDA 880
Query: 407 SNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRT 586
SN+ +GAVL+Q HP+ YFSKKL PK+Q +STY++E++AI EA KKWRQYLLGR FII T
Sbjct: 881 SNVAVGAVLSQDSHPLAYFSKKLNPKLQNSSTYVREMYAITEAFKKWRQYLLGRPFIIYT 940
Query: 587 DHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSR-VPGDENALEPL 763
D +S++ L Q + TPEQQ ++ KL+G+ + I+Y+PG N V DALSR P + N L
Sbjct: 941 DQQSLRGLMNQTIQTPEQQKWLVKLLGFQYSIQYKPGTQNKVVDALSRSFPVEANCLAI- 999
Query: 764 SSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRYV 943
S ++ FLD ++ + ++ +L + DS + F++ G++ R V
Sbjct: 1000 ---------SGLVFSFLDDLR-QYFISDTRGKLFFQQCQDSPSE-FTIVNGLIMRDGRIV 1048
Query: 944 IGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIK 1123
I L+ ++HEFH+T+ GH GI RTL R++A F+W MR+ V++FV +C+VCQ++K
Sbjct: 1049 IPDSHPLQQTLLHEFHSTLTGGHAGISRTLVRLSASFWWNNMRKSVKEFVSTCKVCQEVK 1108
Query: 1124 YSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQF 1303
Y T P GLL+PLPIPS W ++ MDFIT LP S G I V+VD+ +K AHF ALPA
Sbjct: 1109 YLTSKPQGLLEPLPIPSQAWQDIAMDFITHLPISHGKVTIWVIVDRFSKYAHFLALPAGV 1168
Query: 1304 SATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQ 1483
+A A +FA +VK+HG P SI+SDRDP+F+S FW +LFKL GT L SSA+HPQTDGQ
Sbjct: 1169 TAPHLAAIFAQEIVKLHGIPRSIVSDRDPLFVSKFWNELFKLQGTQLPMSSAYHPQTDGQ 1228
Query: 1484 TEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPP 1663
+EV+NR LE YLR F E PK+W +L WAE+SYN+++HSA +TPFQAL+G PPPSIP
Sbjct: 1229 SEVLNRCLETYLRAFVSENPKQWTRILHWAEWSYNSSFHSAACMTPFQALYGFPPPSIPS 1288
Query: 1664 YRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQ 1843
Y S ++ +D+ L +R +LL+ LKANL +A NRM +A+ R E+Q++ GD V V+LQ
Sbjct: 1289 YLPGSTTVAQLDDSLIDRQQLLKQLKANLARASNRMKIQADRKRVEKQFTEGDLVLVKLQ 1348
Query: 1844 PYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNE 2023
PYRQ +V QKL K+Y+GP+ +L+K G V YKL+L SR+HPVFHVS+L+ F G+
Sbjct: 1349 PYRQQSVVSRTSQKLSKKYFGPYKILQKIGPVAYKLELPEGSRVHPVFHVSLLRAFKGDL 1408
Query: 2024 DTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQ 2203
+ PLP EC P +P I +V + K +TQVLV+W P STW + +
Sbjct: 1409 PATPSPLPTECVNGQPTLEPELILKSRQVKQAKKVLTQVLVKWKQLPESDSTWEWAEDIS 1468
Query: 2204 QHFPNLHLEDKVVLQGGESDMPNPTD 2281
FPN +LE+KVV+Q G + M + ++
Sbjct: 1469 SSFPNFNLENKVVIQEGSNVMSSSSN 1494
>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1535
Score = 737 bits (1902), Expect = 0.0
Identities = 376/792 (47%), Positives = 513/792 (64%), Gaps = 9/792 (1%)
Frame = +2
Query: 50 YIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGYYRR 229
Y+KLSKC+F +EYLGHVV V D K +A+ +WP P VKQLRGFLGL GYYRR
Sbjct: 757 YVKLSKCNFGVLEIEYLGHVVTGQGVSMDKDKVQAVLNWPTPMNVKQLRGFLGLTGYYRR 816
Query: 230 FVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVETDAS 409
F++ YA IA+PLTDLL +A++W A AF +LK A+ APVL LP+F + F++ETDAS
Sbjct: 817 FIKSYAKIASPLTDLLKKEAYQWNAQAEEAFKQLKNAITTAPVLALPNFKLPFILETDAS 876
Query: 410 NIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFIIRTD 589
+GIGAVL Q+GHPI YFSKKL P+ Q S Y +E+ AI EA+ K+R YLLG FIIRTD
Sbjct: 877 GVGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTD 936
Query: 590 HKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEPLSS 769
KS++ L +Q + TP+QQ ++ K +GY F IEY+PGK N ADALSR+ LS
Sbjct: 937 QKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADALSRIM-------TLSW 989
Query: 770 GHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQNFSVKEGILYFQHRYVIG 949
S P F++ I+ + +++E+ + + +S+++G+LY++ R VI
Sbjct: 990 -------SEPKCQFIEQIRVALQNDNQMREILMKCNAGKAPVQYSMRDGLLYWKQRLVIP 1042
Query: 950 SKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQIKYS 1129
+ L K++ EFH + + GH GI RT+ARI + FYW M++D+ D+V+ C VCQQ K +
Sbjct: 1043 KDNDLLYKVLFEFHTSPIGGHAGITRTMARIKSQFYWPDMKQDIIDYVQKCMVCQQAKTT 1102
Query: 1130 TQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPAQFSA 1309
+P GLLQPLPIPS VW+++ MDFITGLP S G+ I+VVVD+LTK AHF + + +++
Sbjct: 1103 NTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSSGYTTIMVVVDRLTKYAHFIPMKSDYTS 1162
Query: 1310 TQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTDGQTE 1489
AE F +VK+HG P SI+SDRD +F S FWQQLFKL GT+L SSA+HPQ+DGQTE
Sbjct: 1163 KSVAESFMHNIVKLHGMPKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTE 1222
Query: 1490 VVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSIPPYR 1669
V+N++LE +LRCFT PK W +L WAE+ YNT + +++ +TPF+AL+GR PP + Y
Sbjct: 1223 VLNKALELFLRCFTFHNPKSWSKVLSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYE 1282
Query: 1670 RDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VRLQPY 1849
A+ E L ERD++LQ LK+NL +AQ M ++A+ HR++ + +GD V V+LQPY
Sbjct: 1283 AQVTDPPALQEELMERDKILQQLKSNLDRAQQYMKKQADKHRKDVTFQVGDLVLVKLQPY 1342
Query: 1850 RQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVGNEDT 2029
RQ +VA QKL RY+GPF ++ G+V YKL L ++IHPVFHVS LKPF G
Sbjct: 1343 RQQSVALRKNQKLGMRYFGPFEIIACIGAVAYKLKLPDNAKIHPVFHVSQLKPFKGAASD 1402
Query: 2030 SVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQLQQH 2209
LPLPL E P+ +P+A+ ++R + + Q+LVQW +TW D D LQ
Sbjct: 1403 QYLPLPLTMTETGPIMQPIAVLQARTIMRGTQRVHQILVQWDTNAEAEATWEDFDDLQLK 1462
Query: 2210 FPNLHLEDKVVLQG-GESDMPNPTDLGLNHPESAQ--------HEIISQAQEEEPMRKSN 2362
FP L+LEDKVV G G PN T+L L SA+ H+ +S +E R+
Sbjct: 1463 FPTLNLEDKVVFNGEGIVMRPNTTNL-LEENVSAKFHKGPQDMHDSVSGGKELSGPRRGQ 1521
Query: 2363 RLKITPKWHKDY 2398
R K ++Y
Sbjct: 1522 RAKKPHSMWREY 1533
>gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifolium pratense]
Length = 1181
Score = 723 bits (1865), Expect = 0.0
Identities = 360/738 (48%), Positives = 499/738 (67%), Gaps = 1/738 (0%)
Frame = +2
Query: 41 HHFYIKLSKCSFAQNSMEYLGHVVVAGEVRADPKKNEAMTSWPIPSTVKQLRGFLGLIGY 220
+ F+ KLSKC F +S+EYLGH++ VRADP K +AM SWP+P + LR FLGL G+
Sbjct: 423 NQFFAKLSKCQFGVSSVEYLGHIISVEGVRADPSKLQAMVSWPVPKNITALRAFLGLTGF 482
Query: 221 YRRFVRGYASIAAPLTDLLCTDAFRWTEDATAAFNKLKQAMVEAPVLYLPDFTMEFVVET 400
YRRFV YASIA+PLTDLL ++F W++ A AFN LK AM P+L LP+FT+ F V T
Sbjct: 483 YRRFVLNYASIASPLTDLLKANSFAWSDAANTAFNTLKNAMANLPLLTLPNFTLPFEVTT 542
Query: 401 DASNIGIGAVLTQKGHPITYFSKKLGPKMQAASTYLKELHAIVEAVKKWRQYLLGRSFII 580
DAS +GAVL+Q P+ +FSKKL ++ A+STY++EL+A+ EA+KKWRQYLLG F I
Sbjct: 543 DASLTAVGAVLSQNSKPLAFFSKKLSARLSASSTYVRELYALTEAIKKWRQYLLGSPFKI 602
Query: 581 RTDHKSIKELFQQVVHTPEQQIYIQKLMGYSFRIEYRPGKLNSVADALSRVPGDENALEP 760
TDHKS+K L Q + TPEQQ ++ KL+GY++ I Y+PGK N VADALSRV E+ +E
Sbjct: 603 FTDHKSLKSLMTQTIQTPEQQKWLTKLLGYTYEIHYKPGKENVVADALSRV--QESPMEG 660
Query: 761 LSSGHHFQLESRPIWDFLDAIKSENSVNPELQELHQRIATDSSLQN-FSVKEGILYFQHR 937
+ L + PI + ++S S NP +L + TD +Q F VK G+L+FQ+R
Sbjct: 661 ECA-----LLTFPISTLISQLQSFFSSNPAGTKLMNKAVTDPKMQQQFQVKAGLLHFQNR 715
Query: 938 YVIGSKSALKLKIMHEFHATMLAGHPGIKRTLARIAAVFYWVGMRRDVEDFVKSCQVCQQ 1117
I +S L ++ EFH++ GH GI+ TLAR++A FYW GM +DV+ FV +C VCQ
Sbjct: 716 LFIPFESGLTTSLLQEFHSSPTGGHSGIQATLARLSATFYWPGMYKDVKQFVNACSVCQH 775
Query: 1118 IKYSTQAPTGLLQPLPIPSMVWDEVTMDFITGLPESKGFAVILVVVDQLTKSAHFGALPA 1297
KYSTQ+P GLLQPLP+P VW++++MDFIT LP + + I V+VD+LTK AHF ALP
Sbjct: 776 NKYSTQSPYGLLQPLPLPQQVWEDISMDFITHLPMTHNRSCIWVIVDRLTKFAHFIALPG 835
Query: 1298 QFSATQTAELFADMVVKIHGFPSSIISDRDPIFLSNFWQQLFKLNGTTLRHSSAFHPQTD 1477
F+A A +F + ++HG P +I+SDRD +F+S FW+ LF GT+L SS++HPQ+D
Sbjct: 836 SFTAASLAPIFITEIYRLHGAPKTIVSDRDRVFVSQFWRALFHHLGTSLAFSSSYHPQSD 895
Query: 1478 GQTEVVNRSLEQYLRCFTQEQPKRWVTLLKWAEFSYNTNYHSALKLTPFQALFGRPPPSI 1657
GQTEV+NR LE YLRCF ++P+ W+ L AEF YNT++H+A+ +TPF+AL+GR PP++
Sbjct: 896 GQTEVLNRCLETYLRCFVSDEPRLWLRFLALAEFWYNTSFHTAIGMTPFEALYGRKPPTL 955
Query: 1658 PPYRRDSVSIQAVDELLAERDELLQSLKANLVQAQNRMVQKANLHRREQQYSIGDKV*VR 1837
Y + I+++DELL ++ +L+ LK NLV+A+NRM+ +AN HR+++ + +G V ++
Sbjct: 956 VHYTPGTSKIESLDELLTQKTLVLKVLKENLVKARNRMIIQANQHRQDRNFEVGQWVYLK 1015
Query: 1838 LQPYRQTTVARCPCQKLDKRYYGPFTVLEKFGSVTYKLDLSPESRIHPVFHVSVLKPFVG 2017
LQPYRQ +V KL KRYYGPF +L+K G V Y+LDL SR+HPVFHVS+LK G
Sbjct: 1016 LQPYRQHSVHHRESHKLAKRYYGPFRILKKIGKVAYELDLPAASRVHPVFHVSLLKLCHG 1075
Query: 2018 NEDTSVLPLPLECFENHPVHKPMAICAEHKVLRRGKEITQVLVQWSDAPLESSTWGDLDQ 2197
T V P+ +P P+ + ++ + G +I + LV+W D PL +TW
Sbjct: 1076 EPTTQVTPIADP--STYPPIIPVPVAIRNRRISAG-DIEEFLVEWKDLPLSEATWVAKTT 1132
Query: 2198 LQQHFPNLHLEDKVVLQG 2251
Q FPN +LEDK++ G
Sbjct: 1133 FQDQFPNTNLEDKILFDG 1150