BLASTX nr result
ID: Rehmannia30_contig00016812
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00016812
(954 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AJE29370.1| putative gag protein [Coffea canephora] 163 4e-47
gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis] 104 4e-30
gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinen... 104 4e-30
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 88 2e-20
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo... 86 3e-20
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 84 7e-20
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 96 1e-18
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 73 5e-18
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 74 7e-18
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 74 7e-18
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 82 1e-17
gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposo... 82 2e-17
gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposo... 78 2e-17
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 81 3e-17
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 78 3e-17
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo... 83 5e-17
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii] 73 9e-17
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 69 1e-16
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 69 2e-16
gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposo... 85 4e-16
>gb|AJE29370.1| putative gag protein [Coffea canephora]
Length = 433
Score = 163 bits (413), Expect(3) = 4e-47
Identities = 88/177 (49%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 448
+LLLT + DSY+S+VTTLLY KDTL+ E++++SLL HEKQ+KANQD E+AL+ARG N+
Sbjct: 149 LLLLTPVSDSYESVVTTLLYGKDTLEFENVQSSLLDHEKQRKANQDVTQEAALIARGENK 208
Query: 449 NGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXR--WR 622
G K I C CH+ GHIKR CP +KK
Sbjct: 209 RG-KQFGGESKAGGSKAKRKGGIQCFGCHEFGHIKRYCPHQKKNDENDYDGVAGYASGGD 267
Query: 623 YLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
LT+S +TSSRD WILDSGCV HV SR DYFD LQ ++AG + GDGSTC++ G+
Sbjct: 268 ILTISKGNNTSSRDGWILDSGCVSHVCSRLDYFDTLQRKKAGFMCLGDGSTCQVKGV 324
Score = 53.9 bits (128), Expect(3) = 4e-47
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDS 900
G+GVVKIKM +G R+LGGVAYVPK+R NLIS Q+DS
Sbjct: 323 GVGVVKIKMLNGEIRSLGGVAYVPKLRRNLISLNQLDS 360
Score = 21.2 bits (43), Expect(3) = 4e-47
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 912 YSAGGGVLKITRG 950
+SA GVLKIT G
Sbjct: 365 FSAASGVLKITYG 377
>gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]
Length = 1371
Score = 104 bits (260), Expect(3) = 4e-30
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 448
+LLLTS+PDSY++++TT+LY KDTL +E ++++LL+HEK++KA D+ S VA+ NR
Sbjct: 339 LLLLTSLPDSYENIITTILYGKDTLKMEEVESTLLNHEKRRKA--DDSQISVFVAQDQNR 396
Query: 449 NGRK-XXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKK-------XXXXXXXXX 604
GR C++C + GHI+ +CP K+
Sbjct: 397 WGRSTARGSSGHSRSKSRGRGKGKQCYKCKEWGHIRPDCPLWKEKDDKGSDCSMTGIAQA 456
Query: 605 XXXRWRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRI 784
+LTVS T S+ WILD+G H+ SRR+YFD Q + G + GDG+ +
Sbjct: 457 SNDFGEFLTVSKGNYTCSQRDWILDTGSSHHLCSRREYFDTFQ-EVKGFVTWGDGTRRCV 515
Query: 785 MGL 793
MG+
Sbjct: 516 MGV 518
Score = 55.1 bits (131), Expect(3) = 4e-30
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDI 915
G+G VKIKM DG RTLG V YVP+ R NL+S Q+DS C +
Sbjct: 517 GVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVSLSQLDSKGCRV 559
Score = 21.6 bits (44), Expect(3) = 4e-30
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 909 RYSAGGGVLKITRG 950
R S+ GG +KI+RG
Sbjct: 558 RVSSAGGAMKISRG 571
>gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 460
Score = 104 bits (260), Expect(3) = 4e-30
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 448
+LLLTS+PDSY++++TT+LY KDTL +E ++++LL+HEK++KA D+ S VA+ NR
Sbjct: 149 LLLLTSLPDSYENIITTILYGKDTLKMEEVESTLLNHEKRRKA--DDSQISVFVAQDQNR 206
Query: 449 NGRK-XXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKK-------XXXXXXXXX 604
GR C++C + GHI+ +CP K+
Sbjct: 207 WGRSTARGSSGHSRSKSRGRGKGKQCYKCKEWGHIRPDCPLWKEKDDKGSDCSMTGIAQA 266
Query: 605 XXXRWRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRI 784
+LTVS T S+ WILD+G H+ SRR+YFD Q + G + GDG+ +
Sbjct: 267 SNDFGEFLTVSKGNYTCSQRDWILDTGSSHHLCSRREYFDTFQ-EVKGFVTWGDGTRRCV 325
Query: 785 MGL 793
MG+
Sbjct: 326 MGV 328
Score = 55.1 bits (131), Expect(3) = 4e-30
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDI 915
G+G VKIKM DG RTLG V YVP+ R NL+S Q+DS C +
Sbjct: 327 GVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVSLSQLDSKGCRV 369
Score = 21.6 bits (44), Expect(3) = 4e-30
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 909 RYSAGGGVLKITRG 950
R S+ GG +KI+RG
Sbjct: 368 RVSSAGGAMKISRG 381
>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
Length = 876
Score = 87.8 bits (216), Expect(2) = 2e-20
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 448
I+LL S+P SYD +VTTL Y KD++ L I ++LLSH ++++ + L +G +
Sbjct: 75 IILLCSLPGSYDHLVTTLTYGKDSITLTSITSALLSHGQRRQNAEGGSQGEGLYVQGCSD 134
Query: 449 NGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKK----XXXXXXXXXXXXR 616
GR + C+ C GH KR+CP K+
Sbjct: 135 RGRNKGKAGSGKKRSKSKNRKTSECYSCKQIGHWKRDCPNIKQGSSTSANLVHTDDSCSE 194
Query: 617 WRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
L VS+ + D WILDSGC H+ R++F + G ++ GD C I G+
Sbjct: 195 GDILCVSS---SKCTDAWILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITGI 250
Score = 40.4 bits (93), Expect(2) = 2e-20
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSN 903
GIG +KI M DG RTL V Y+P++R NLIS + N
Sbjct: 249 GIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQEN 287
>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 364
Score = 85.5 bits (210), Expect(2) = 3e-20
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL S+P SY+S V +L K+ + +E +K+SL S E + +A N +E + S+LV
Sbjct: 157 MILLASLPPSYESFVNSLSVGKECITMEEVKSSLHSREFRLRASGNSEESNGSSLVVSNS 216
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+N +K C+ C + GH K++CP++K
Sbjct: 217 GKNMKKKKDKSKRKTNVNPKDI----CNYCKEPGHWKKDCPKKKGKPSAAVAKEESTSEN 272
Query: 623 YLTVSTRIDTS-SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
L +S S D WILDSGC H+ R +FD + + G +F G+ + C+ +G+
Sbjct: 273 ELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 330
Score = 42.4 bits (98), Expect(2) = 3e-20
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLIS 882
GIG +KIKM DG+ RTL V +VP+++ NLIS
Sbjct: 329 GIGTIKIKMHDGITRTLTEVRHVPELKKNLIS 360
>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
Length = 1309
Score = 84.0 bits (206), Expect(2) = 7e-20
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKK-ANQDEGHESALVARGMN 445
IL+L+S+P SY+ V T+LY K+TL + +K++L S E KK + E L RG
Sbjct: 145 ILMLSSLPRSYEHFVDTMLYGKETLTMAEVKSALNSKELHKKNETKMESTGEGLNVRGRT 204
Query: 446 RNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCP--------RRKKXXXXXXXX 601
R+ + C CH EGH K++CP RRK
Sbjct: 205 YK-RESRNEKGGKHRSQSRTRGKLKCFVCHKEGHFKKDCPDRRARNPERRKDPGDAAVVS 263
Query: 602 XXXXRWRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCR 781
L VS T+ +D W++DSGC H+ + +F L + +G + G+ C+
Sbjct: 264 DGYESAEVLVVSR---TNKQDCWVMDSGCSFHMCPIKSWFQNLVEEESGHVLLGNNRECK 320
Query: 782 IMGL 793
+MG+
Sbjct: 321 VMGI 324
Score = 42.7 bits (99), Expect(2) = 7e-20
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDIQLE 924
GIG V +KM DG RT+ V YVP +R NL+S +DS ++++E
Sbjct: 323 GIGSVLLKMHDGCVRTITEVRYVPDLRRNLLSIGMLDSKGFNVKIE 368
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 95.9 bits (237), Expect = 1e-18
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 448
+LLL+S+P SYD +VTT+LY KDTL +E + A+LLS+E + K + E +L +
Sbjct: 35 LLLLSSLPKSYDHLVTTILYGKDTLKVEEVNATLLSNEVRNKQSTGE----SLTVKTSQD 90
Query: 449 NGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWRYL 628
GR N C+ C EGH KR+CP++ K L
Sbjct: 91 RGRSKNKFGNQYRYRSISKENDNRCYYCKKEGHWKRDCPKKSKQQQQKKSGEEASVASRL 150
Query: 629 -----TVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
T+ T S D WILDS C H+ RD+F + G + G+ S C+ +G+
Sbjct: 151 EKDSETLCTFSCMDSSDSWILDSDCSYHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGI 210
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 72.8 bits (177), Expect(3) = 5e-18
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESA--LVARGM 442
I L+ S+P+SY+ V ++Y + TL ++ ++ +L S E +K + ++S LVARG
Sbjct: 100 IFLMCSLPNSYEHFVDIMMYGRGTLFIKDVRVALNSRELKKMVFKSRKYDSGEGLVARGR 159
Query: 443 NR---NGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXX 613
R NGR+ C +C EGH +N P RK
Sbjct: 160 TRKKNNGRRGRSRSKSRGNNK--------CFKCKKEGHYVKNXPDRKGKENKRNYNSGDA 211
Query: 614 RWRYLTVSTR-----IDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTC 778
+ +T T+S D WILDSGC H+ D+F Q G + G+ C
Sbjct: 212 TFAKENSNTTDVLLVXVTNSDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVAC 271
Query: 779 RIMGL 793
+++G+
Sbjct: 272 KVVGI 276
Score = 40.8 bits (94), Expect(3) = 5e-18
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSC 909
GI ++IKM G+ RTL V +VPK+ NLI +DSN C
Sbjct: 275 GIHXIQIKMHGGIIRTLTNVRHVPKLNKNLIFLRTLDSNGC 315
Score = 26.6 bits (57), Expect(3) = 5e-18
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 912 YSAGGGVLKITRGG 953
Y AGGGVL++++GG
Sbjct: 317 YKAGGGVLRVSKGG 330
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 73.6 bits (179), Expect(3) = 7e-18
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA-------NQDEGHESAL 427
I++L S+P SY++ V T++Y +D L LE +K +L S E +KK N+ EG L
Sbjct: 649 IIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALSSSELRKKITGKVVENNEGEG----L 704
Query: 428 VARGMNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXX 607
VARG + K I C+ C GH+K +CP+RK+
Sbjct: 705 VARGRS----KAKGGSSSKSHPRSQSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQND 760
Query: 608 XXRWRYLTVSTRI-------DTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGD 766
S+ D+ + WILD+G H+ + +D F + + +G + G+
Sbjct: 761 RANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSKDAFSTYE-KHSGSVLMGN 819
Query: 767 GSTCRIMGL 793
C++MG+
Sbjct: 820 DHACQVMGI 828
Score = 42.7 bits (99), Expect(3) = 7e-18
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVD 897
GIG V+IKM DG+ RTL V ++P+M+ NLIS +D
Sbjct: 827 GIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLD 863
Score = 23.5 bits (49), Expect(3) = 7e-18
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 909 RYSAGGGVLKITRG 950
RYSA GGVLK+ G
Sbjct: 868 RYSAEGGVLKVFSG 881
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 73.6 bits (179), Expect(3) = 7e-18
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA-------NQDEGHESAL 427
I++L S+P SY++ V T++Y +D L LE +K +L S E +KK N+ EG L
Sbjct: 670 IIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALSSSELRKKITGKVVENNEGEG----L 725
Query: 428 VARGMNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXX 607
VARG + K I C+ C GH+K +CP+RK+
Sbjct: 726 VARGRS----KAKGGSSSKSHPRSQSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQND 781
Query: 608 XXRWRYLTVSTRI-------DTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGD 766
S+ D+ + WILD+G H+ + +D F + + +G + G+
Sbjct: 782 RANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSKDAFSTYE-KHSGSVLMGN 840
Query: 767 GSTCRIMGL 793
C++MG+
Sbjct: 841 DHACQVMGI 849
Score = 42.7 bits (99), Expect(3) = 7e-18
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVD 897
GIG V+IKM DG+ RTL V ++P+M+ NLIS +D
Sbjct: 848 GIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLD 884
Score = 23.5 bits (49), Expect(3) = 7e-18
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 909 RYSAGGGVLKITRG 950
RYSA GGVLK+ G
Sbjct: 889 RYSAEGGVLKVFSG 902
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 82.0 bits (201), Expect(2) = 1e-17
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKK---ANQDEGHESALVARG 439
++LL+S+PD ++ + TTLL+ K+ + L+ + ++L SHE +K+ + E ALVARG
Sbjct: 87 LMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVARG 146
Query: 440 MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPR--RKKXXXXXXXXXXXX 613
++ K C CH++GH K++CP+ +K+
Sbjct: 147 RQQSQTKERRGMSKSKGRAVAKDE---CAFCHEKGHWKKDCPKLQKKEKVLQDANVAECK 203
Query: 614 RWRYLTVSTRIDTSSR---D*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRI 784
+S + S+ D WILDSGC H+ RD+F Q G+++ G+ + C+
Sbjct: 204 SDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKT 263
Query: 785 MGL 793
+G+
Sbjct: 264 VGI 266
Score = 37.0 bits (84), Expect(2) = 1e-17
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDS 900
GIG +K++ DG R L V YVPK++ NLIS ++S
Sbjct: 265 GIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALES 302
>gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 269
Score = 82.4 bits (202), Expect(2) = 2e-17
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 4/180 (2%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL S+P SY+S V +L K+ + +E +K+S+ S E + KA N + + + L+A
Sbjct: 52 MILLASLPPSYESFVNSLSVGKECITMEEVKSSMHSRELRFKASANSEGVNGAGLLAFNS 111
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+NG+K C+ C + GH K++CP+++ +
Sbjct: 112 TKNGKKKKEQGKKKIKFNPRDI----CNYCKEPGHWKKDCPKKRNQKSVAAATQEDSSFE 167
Query: 623 YLTVSTRIDTS--SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGLE 796
V + +D S + W+LDSGC H+ R +F + + +G +F G+ C+I+G+E
Sbjct: 168 NELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSSGDVFMGNDMACKIIGIE 227
Score = 36.2 bits (82), Expect(2) = 2e-17
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDIQ 918
GI ++I+M DGV RTL V +VP ++ NLIS +D+ +Q
Sbjct: 225 GIETIQIEMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKMQ 268
>gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 507
Score = 78.2 bits (191), Expect(2) = 2e-17
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 4/179 (2%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL S+P SY+S V +L K+ + +E +K+SL S E KA N + + + L+A
Sbjct: 54 MILLASLPPSYESFVNSLTVGKECITMEEVKSSLHSRELWFKASANSEGVNGAGLLAFNS 113
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+NG+K C+ C + GH K++CP+++ +
Sbjct: 114 TKNGKKKKEQGKKKTKVNPRDI----CNYCKEPGHWKKDCPKKRNQKSVAVAAQEDSSFE 169
Query: 623 YLTVSTRIDTS--SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
V + +D S + W+LDSGC H+ R +F + + G +F G+ C+ +G+
Sbjct: 170 NELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 228
Score = 40.0 bits (92), Expect(2) = 2e-17
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDIQLEVES*K 939
GIG ++IKM DGV RTL V +VP ++ NLIS + + +EV+ K
Sbjct: 227 GIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEVKELK 277
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 80.9 bits (198), Expect(2) = 3e-17
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKK---ANQDEGHESALVARG 439
++LL+S+PD ++ + TTLL+ K+ + L+ + ++L SHE +K+ + E ALV RG
Sbjct: 86 LMLLSSLPDEFEHLETTLLHGKENVSLDAVCSALYSHELRKQDKMRTKSTTSEEALVIRG 145
Query: 440 MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPR-RKKXXXXXXXXXXXXR 616
++ K C CH++GH K++CP+ +KK +
Sbjct: 146 RQQSQTKERRGMSKSKGRVVAKDE---CAFCHEKGHWKKDCPKLQKKEKVPQDANVAECK 202
Query: 617 WRY---LTVSTRIDTSSR-D*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRI 784
+++ + SS D WILDSGC H+ RD+F Q G+++ G+ + C+
Sbjct: 203 SDVESDISLIVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKT 262
Query: 785 MGL 793
+G+
Sbjct: 263 VGI 265
Score = 37.0 bits (84), Expect(2) = 3e-17
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDS 900
GIG +K++ DG R L V YVPK++ NLIS ++S
Sbjct: 264 GIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALES 301
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 78.2 bits (191), Expect(2) = 3e-17
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 4/179 (2%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL S+P SY+S V +L K+ + +E +K+SL S E KA N + + + L+A
Sbjct: 81 MILLASLPPSYESFVNSLTVGKECITMEEVKSSLHSRELWFKASANSEGVNGAGLLAFNS 140
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+NG+K C+ C + GH K++CP+++ +
Sbjct: 141 TKNGKKKKEQGKKKTKVNPRDI----CNYCKEPGHWKKDCPKKRNQKSVAVAAQEDSSFE 196
Query: 623 YLTVSTRIDTS--SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
V + +D S + W+LDSGC H+ R +F + + G +F G+ C+ +G+
Sbjct: 197 NELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 255
Score = 39.7 bits (91), Expect(2) = 3e-17
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLIS 882
GIG ++IKM DGV RTL V +VP ++ NLIS
Sbjct: 254 GIGTIQIKMHDGVIRTLTEVRHVPDLKKNLIS 285
>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 352
Score = 83.2 bits (204), Expect(2) = 5e-17
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL +P SY+S V +L K+ + +E +K+SL S E + +A N +E + S+LV
Sbjct: 157 MILLAYLPPSYESFVNSLSVGKECITMEEVKSSLHSREFRLRASGNSEESNGSSLVVSNS 216
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+N +K C+ C + GH K++CP++K
Sbjct: 217 GKNMKKKKDKSKRKTNVNPKDI----CNYCKEPGHWKKDCPKKKGKPSAAVAKEESTSEN 272
Query: 623 YLTVSTRIDTS-SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
L +S S D WILDSGC H+ R +FD + + G +F G+ + C+ +G+
Sbjct: 273 ELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 330
Score = 33.9 bits (76), Expect(2) = 5e-17
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVP 858
GIG +KIKM DG+ RTL V +VP
Sbjct: 329 GIGTIKIKMHDGITRTLTKVRHVP 352
>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
Length = 297
Score = 73.2 bits (178), Expect(2) = 9e-17
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKD-TLDLEHIKASLLSHE-KQKKANQDEGHESALVARGM 442
++LL ++P +Y+ +LY ++ T+ L+ +++++ + E +KK ++E L+ARG
Sbjct: 54 LILLNALPKAYEHFKDAMLYGREQTITLDEVQSAVKAKELPRKKEGKEENTGEGLMARGR 113
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXR-- 616
+ + C CH EGH KR+CP RKK
Sbjct: 114 SEK----CDNKAPRNESRSKSKGRLKCFHCHKEGHFKRDCPDRKKKVHEKPKDPGEASVA 169
Query: 617 ---WRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIM 787
+ V D S WI+DSGC H+ + +F+ L+ G + G+ C++
Sbjct: 170 SDGYDSAEVLVVTDEDSSKEWIMDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKPCKVA 229
Query: 788 GL 793
G+
Sbjct: 230 GI 231
Score = 43.1 bits (100), Expect(2) = 9e-17
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDIQLE 924
GIG V+I+M DG++R L V YVP+++ NLIS +D N + E
Sbjct: 230 GIGSVRIRMFDGMERILQQVRYVPELKRNLISLGMLDMNGYSFKAE 275
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 68.6 bits (166), Expect(2) = 1e-16
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 11/186 (5%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEK---QKKANQDEGHESALVARG 439
+LLL S+P SY S TL+Y KD L E +K LLS +K + N +++++
Sbjct: 413 MLLLCSLPSSYKSFKETLIYGKDKLSFEDVKGHLLSRDKLDNEFDLNSKADRQASVLVAS 472
Query: 440 MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIK--------RNCPRRKKXXXXXX 595
R R C C GH+K + +
Sbjct: 473 KKREKR---------------------CRYCKKLGHVKADYYKLRNKRAAESNEEDVVGA 511
Query: 596 XXXXXXRWRYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGST 775
+L VST ++ WILDSGC H+Y R++F G++ G+ S+
Sbjct: 512 NLVDEGGDDFLLVSTSDNSKLTSEWILDSGCSFHMYPNREWFSTYSSVEGGVVHMGNDSS 571
Query: 776 CRIMGL 793
+I+G+
Sbjct: 572 SKIIGI 577
Score = 47.0 bits (110), Expect(2) = 1e-16
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVDSNSCDIQLE 924
GIG VKI++ DG +TL V YVP +R NLIS +D C I +E
Sbjct: 576 GIGTVKIRIHDGTIKTLSDVRYVPDLRKNLISLSILDLKGCRINIE 621
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 68.6 bits (166), Expect(3) = 2e-16
Identities = 52/197 (26%), Positives = 78/197 (39%), Gaps = 22/197 (11%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 439
++LL S+P SY + T+LY +DTL L+ + +L + EK KK EG S LV RG
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 204
Query: 440 ----MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNC--------------P 565
N N + C C +GH C P
Sbjct: 205 SQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIP 264
Query: 566 RRKKXXXXXXXXXXXXRW-RYLTVSTRIDTSSRD*WILDSGCVMHVYSRRDYFDLLQLQR 742
+ KK + L V+ + D WILD+ C H+ RD+F ++ +
Sbjct: 265 KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQ 324
Query: 743 AGILFSGDGSTCRIMGL 793
G + GD + C + G+
Sbjct: 325 GGTVLMGDDTPCEVAGI 341
Score = 42.0 bits (97), Expect(3) = 2e-16
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAYVPKMRMNLISWCQVD 897
GIG V+IKM DG RTL V ++P ++ +LIS C +D
Sbjct: 340 GIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLD 376
Score = 24.6 bits (52), Expect(3) = 2e-16
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 909 RYSAGGGVLKITRG 950
+YS G G+LK+T+G
Sbjct: 381 KYSGGDGILKVTKG 394
>gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 254
Score = 85.1 bits (209), Expect(2) = 4e-16
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Frame = +2
Query: 269 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKA--NQDEGHESALVARGM 442
++LL S+P SY+S V +L K+ + +E +K+SL S E + +A N +E + S+LV
Sbjct: 54 MILLASLPPSYESFVNSLSVGKECITMEEVKSSLHSREFRLRASGNSEESNGSSLVVSNS 113
Query: 443 NRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRKKXXXXXXXXXXXXRWR 622
+N +K C+ C + GH K++CP++K
Sbjct: 114 GKNMKKKKHKSKRKTNVNPKDI----CNYCKEPGHWKKDCPKKKGKPSIAVAKEESTSEN 169
Query: 623 YLTVSTRIDTS-SRD*WILDSGCVMHVYSRRDYFDLLQLQRAGILFSGDGSTCRIMGL 793
L +S S D WILDSGC H+ R +FD + + G +F G+ + C+ +G+
Sbjct: 170 ELVLSIADHPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 227
Score = 28.9 bits (63), Expect(2) = 4e-16
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 787 GIGVVKIKMGDGVDRTLGGVAY 852
GIG +KIKM DG+ RTL V +
Sbjct: 226 GIGTIKIKMHDGIIRTLTEVRH 247