BLASTX nr result
ID: Rehmannia30_contig00016767
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00016767
(1729 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PRQ15682.1| putative DNA-directed RNA polymerase (chloroplast... 423 e-176
ref|YP_009353974.1| RNA polymerase alpha subunit (chloroplast) [... 481 e-165
ref|YP_009344468.1| RNA polymerase alpha subunit (chloroplast) [... 478 e-163
ref|YP_009354237.1| RNA polymerase alpha subunit (chloroplast) [... 477 e-163
gb|PLY63219.1| hypothetical protein LSAT_0X41600 [Lactuca sativa] 400 e-161
ref|YP_009309483.1| RNA polymerase alpha subunit (chloroplast) [... 472 e-161
gb|AKZ23818.1| RNA polymerase alpha subunit (plastid) [Verbena h... 469 e-160
gb|AVA08967.1| RNA polymerase alpha subunit (chloroplast) [Scute... 466 e-160
gb|AVM81934.1| RNA polymerase alpha subunit (chloroplast) [Tecom... 469 e-160
gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast... 469 e-160
ref|YP_004935698.1| RNA polymerase alpha subunit (chloroplast) [... 469 e-160
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [... 468 e-159
ref|YP_009459731.1| RNA polymerase alpha subunit (chloroplast) [... 468 e-159
ref|YP_009309657.1| RNA polymerase alpha subunit (chloroplast) [... 468 e-159
ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia t... 468 e-159
gb|AVM82710.1| RNA polymerase alpha subunit (chloroplast) [Podra... 468 e-159
ref|YP_009366117.1| RNA polymerase alpha subunit (plastid) [Scut... 468 e-159
ref|YP_009183624.1| RNA polymerase alpha subunit (chloroplast) [... 468 e-159
ref|YP_009354062.1| RNA polymerase alpha subunit (chloroplast) [... 466 e-159
ref|YP_009316344.1| RNA polymerase alpha subunit (plastid) [Cast... 466 e-159
>gb|PRQ15682.1| putative DNA-directed RNA polymerase (chloroplast) [Rosa chinensis]
Length = 464
Score = 423 bits (1088), Expect(2) = e-176
Identities = 207/234 (88%), Positives = 219/234 (93%)
Frame = -1
Query: 712 REKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSI 533
R KVTVSTRTLQWKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT I
Sbjct: 136 RRKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGTCI 195
Query: 532 TRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMI 353
TR + E +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD+I
Sbjct: 196 TRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQDII 255
Query: 352 LPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNV 173
LPP VEI+DNTQHIA+LTEPINLCI L+IERNRGY IK P+NFQDGSYP+DAVFMPVRN
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNA 315
Query: 172 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEEN 11
NHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN
Sbjct: 316 NHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN 369
Score = 227 bits (578), Expect(2) = e-176
Identities = 114/130 (87%), Positives = 119/130 (91%)
Frame = -2
Query: 1206 MAKAIPRTGSRRNVRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCG 1027
MAK IP+ GSRRN RIGSRK+ARRIPKGVIHVQASFNNTIVTVTDVRG+VISWSSAGTCG
Sbjct: 1 MAKPIPKIGSRRNRRIGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 1026 FKGTRRGTPFXXXXXXXXAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVR 847
FKGTRRGTPF AIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+F+R
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
Query: 846 DVTPMPHNGC 817
DVTPMPHNGC
Sbjct: 121 DVTPMPHNGC 130
>ref|YP_009353974.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia glutinosa]
gb|AQZ40505.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia glutinosa]
Length = 337
Score = 481 bits (1239), Expect = e-165
Identities = 238/239 (99%), Positives = 238/239 (99%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
SITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 SITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR
Sbjct: 121 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009344468.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia chingii]
ref|YP_009354324.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia elata]
gb|APT42264.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia chingii]
gb|AQZ40854.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia elata]
Length = 337
Score = 478 bits (1230), Expect = e-163
Identities = 236/239 (98%), Positives = 237/239 (99%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR
Sbjct: 121 IILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009354237.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia piasezkii]
gb|AQZ40767.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia piasezkii]
Length = 337
Score = 477 bits (1227), Expect = e-163
Identities = 235/239 (98%), Positives = 237/239 (99%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVL+SNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLKSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR
Sbjct: 121 IILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>gb|PLY63219.1| hypothetical protein LSAT_0X41600 [Lactuca sativa]
Length = 585
Score = 400 bits (1028), Expect(2) = e-161
Identities = 200/235 (85%), Positives = 212/235 (90%)
Frame = -1
Query: 706 KVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITR 527
K +STRTLQWKCVES DSKRL YGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITR
Sbjct: 221 KKRLSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITR 280
Query: 526 VKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILP 347
K E + HEYSTI GIQESVHEILMNLKEIVLRSNLYGTC+ASICVRGPGYVTAQD+ILP
Sbjct: 281 AKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILP 340
Query: 346 PYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNH 167
PYVEI+DNTQHIASLTEPI L IGL+IE+NRGYLIK P+ FQDGSYP+D VFMPVRN NH
Sbjct: 341 PYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANH 400
Query: 166 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
SIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EENL L
Sbjct: 401 SIHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNL 453
Score = 199 bits (506), Expect(2) = e-161
Identities = 101/126 (80%), Positives = 110/126 (87%)
Frame = -2
Query: 1194 IPRTGSRRNVRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGT 1015
IP+ GSR + IGSRKS R+IPKGVIH+QASFNNTIVTVT+VRG+V+SWSS GT GF+GT
Sbjct: 94 IPKKGSRGH--IGSRKSTRKIPKGVIHIQASFNNTIVTVTNVRGRVVSWSSPGTSGFRGT 151
Query: 1014 RRGTPFXXXXXXXXAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTP 835
+RGTPF AIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTP
Sbjct: 152 KRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTP 211
Query: 834 MPHNGC 817
MPHNGC
Sbjct: 212 MPHNGC 217
Score = 97.4 bits (241), Expect = 2e-17
Identities = 51/63 (80%), Positives = 54/63 (85%)
Frame = -1
Query: 1729 HEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDKVKIEVSRYDSTRGRII 1550
HEGLITESLPNGMFRVRLDNED+ILGYVSGKIRRSFIRILPGD+VKIE S ST +
Sbjct: 8 HEGLITESLPNGMFRVRLDNEDMILGYVSGKIRRSFIRILPGDRVKIERSYNLSTPKQRF 67
Query: 1549 YRL 1541
RL
Sbjct: 68 KRL 70
>ref|YP_009309483.1| RNA polymerase alpha subunit (chloroplast) [Paulownia coreana]
ref|YP_009309570.1| RNA polymerase alpha subunit (chloroplast) [Paulownia tomentosa]
gb|AKM21544.1| RNA polymerase alpha subunit (chloroplast) [Paulownia coreana]
gb|AKM21631.1| RNA polymerase alpha subunit (chloroplast) [Paulownia tomentosa]
Length = 337
Score = 472 bits (1215), Expect = e-161
Identities = 232/239 (97%), Positives = 236/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIE+NRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIEKNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL KEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLDKEEENLPL 239
>gb|AKZ23818.1| RNA polymerase alpha subunit (plastid) [Verbena hastata]
Length = 331
Score = 469 bits (1207), Expect = e-160
Identities = 230/239 (96%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK +NVPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSKNVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEIIDNTQHIASLTEP+NLCIGLEIERNRGYL KMPHNFQDGSYP+DA+FMPVR
Sbjct: 121 IILPPYVEIIDNTQHIASLTEPMNLCIGLEIERNRGYLRKMPHNFQDGSYPIDAIFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>gb|AVA08967.1| RNA polymerase alpha subunit (chloroplast) [Scutellaria
baicalensis]
gb|AVA09054.1| RNA polymerase alpha subunit (chloroplast) [Scutellaria
baicalensis]
Length = 266
Score = 466 bits (1200), Expect = e-160
Identities = 228/239 (95%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQW+CVESRTDSKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWRCVESRTDSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASL EPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLAEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+KEEENLPL
Sbjct: 181 NVNHSIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPL 239
>gb|AVM81934.1| RNA polymerase alpha subunit (chloroplast) [Tecomaria capensis]
Length = 334
Score = 469 bits (1207), Expect = e-160
Identities = 230/239 (96%), Positives = 234/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGYL KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLRKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast) [Antirrhinum
majus]
Length = 336
Score = 469 bits (1207), Expect = e-160
Identities = 229/239 (95%), Positives = 234/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK EN+PHEYSTITGIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD
Sbjct: 61 CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPIN CIGLEIERNRGYLIKMPHNFQDGSY +DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_004935698.1| RNA polymerase alpha subunit (chloroplast) [Sesamum indicum]
gb|AEO92738.1| RNA polymerase alpha subunit (chloroplast) [Sesamum indicum]
gb|AGL45368.1| RpoA (chloroplast) [Sesamum indicum]
Length = 337
Score = 469 bits (1207), Expect = e-160
Identities = 230/239 (96%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPI+ CIGLEIERNRGYLIKMP NFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis]
emb|CDI43950.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis]
Length = 336
Score = 468 bits (1205), Expect = e-159
Identities = 229/239 (95%), Positives = 234/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREK+TVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENV HEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
N+NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NMNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009459731.1| RNA polymerase alpha subunit (chloroplast) [Scrophularia henryi]
gb|AUT13377.1| RNA polymerase alpha subunit (chloroplast) [Scrophularia henryi]
Length = 337
Score = 468 bits (1205), Expect = e-159
Identities = 230/239 (96%), Positives = 234/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENV HEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPIN CIGLEIERNRGYL+KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLLKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009309657.1| RNA polymerase alpha subunit (chloroplast) [Scrophularia
buergeriana]
gb|AKM21717.1| RNA polymerase alpha subunit (chloroplast) [Scrophularia
buergeriana]
Length = 337
Score = 468 bits (1205), Expect = e-159
Identities = 230/239 (96%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIA+RRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAIRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENV HEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGYL+KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLLKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia takesimensis]
gb|AJD00756.1| RNA polymerase alpha subunit (plastid) [Scrophularia takesimensis]
gb|AKM21804.1| RNA polymerase alpha subunit (chloroplast) [Scrophularia
takesimensis]
Length = 335
Score = 468 bits (1203), Expect = e-159
Identities = 230/239 (96%), Positives = 233/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENV HEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGY KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYFFKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>gb|AVM82710.1| RNA polymerase alpha subunit (chloroplast) [Podranea ricasoliana]
Length = 337
Score = 468 bits (1203), Expect = e-159
Identities = 229/239 (95%), Positives = 234/239 (97%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFIL+PLMKGQADTIGIA+RRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAIRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGYL KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLRKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 239
>ref|YP_009366117.1| RNA polymerase alpha subunit (plastid) [Scutellaria lateriflora]
gb|ARJ61616.1| RNA polymerase alpha subunit (plastid) [Scutellaria lateriflora]
Length = 337
Score = 468 bits (1203), Expect = e-159
Identities = 229/239 (95%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRR+LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRSLLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASL EPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLAEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+KEEENLPL
Sbjct: 181 NVNHSIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPL 239
>ref|YP_009183624.1| RNA polymerase alpha subunit (chloroplast) [Scutellaria insignis]
gb|ALN11634.1| RNA polymerase alpha subunit (chloroplast) [Scutellaria insignis]
Length = 337
Score = 468 bits (1203), Expect = e-159
Identities = 229/239 (95%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRR+LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRSLLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DNTQHIASL EPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLAEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL+KEEENLPL
Sbjct: 181 NVNHSIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPL 239
>ref|YP_009354062.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia henryi]
ref|YP_009354149.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia solanifolia]
gb|AQZ40592.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia henryi]
gb|AQZ40680.1| RNA polymerase alpha subunit (chloroplast) [Rehmannia solanifolia]
Length = 335
Score = 466 bits (1200), Expect = e-159
Identities = 233/239 (97%), Positives = 235/239 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQA+TIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQANTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR
Sbjct: 121 IILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 2
NVNHSIHSY GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL
Sbjct: 181 NVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 237
>ref|YP_009316344.1| RNA polymerase alpha subunit (plastid) [Castilleja paramensis]
gb|ANJ04304.1| RNA polymerase alpha subunit (plastid) [Castilleja paramensis]
Length = 337
Score = 466 bits (1200), Expect = e-159
Identities = 226/237 (95%), Positives = 233/237 (98%)
Frame = -1
Query: 718 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 539
MVREKVTVSTRTLQWKCVESR DSKR YYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRFYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 538 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 359
ITRVKF+NVPHEY+TITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKFQNVPHEYATITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 358 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 179
+ILPPYVEI+DN QHIASLTEP+NLCIGLEIERNRGYL+KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNIQHIASLTEPVNLCIGLEIERNRGYLLKMPHNFQDGSYPIDAVFMPVR 180
Query: 178 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENL 8
NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENL
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENL 237