BLASTX nr result
ID: Rehmannia30_contig00016559
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00016559
(3015 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX93614.1| retrovirus-related Pol polyprotein from transposo... 654 0.0
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 645 0.0
gb|PNX74277.1| retrovirus-related Pol polyprotein from transposo... 620 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 625 0.0
gb|OMO65653.1| hypothetical protein CCACVL1_21443 [Corchorus cap... 630 0.0
gb|PNY00469.1| retrovirus-related Pol polyprotein from transposo... 614 0.0
dbj|GAU41679.1| hypothetical protein TSUD_272630 [Trifolium subt... 627 0.0
gb|KYP42321.1| Copia protein [Cajanus cajan] 630 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 612 0.0
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 600 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 615 0.0
gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifo... 604 0.0
gb|PNX97998.1| retrovirus-related Pol polyprotein from transposo... 603 0.0
gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygro... 604 0.0
gb|PNX93906.1| hypothetical protein L195_g017068 [Trifolium prat... 607 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 611 0.0
gb|PNX93131.1| retrovirus-related Pol polyprotein from transposo... 597 0.0
gb|PNX92076.1| retrovirus-related Pol polyprotein from transposo... 588 0.0
gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymera... 585 0.0
gb|PNY03100.1| retrovirus-related Pol polyprotein from transposo... 582 0.0
>gb|PNX93614.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1430
Score = 654 bits (1687), Expect = 0.0
Identities = 352/722 (48%), Positives = 452/722 (62%), Gaps = 40/722 (5%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL++A+ H H++KF RA K VFLGY G KG+ LYD+ NHS L SR+V+F+ED FP +
Sbjct: 713 CLAFASTLHNHRTKFMPRARKTVFLGYRDGTKGFLLYDISNHSFLVSRNVIFYEDVFPLS 772
Query: 2833 SI---------------------------PVP----SNXXXXXXXXXXXXXXXXXXTSSA 2747
S+ P P + S++
Sbjct: 773 SVNSSHTSSTTTLDNFVLPIDPPNFPSSCPAPLSVSTGTNPLTDHAENSATLVDNQVSNS 832
Query: 2746 PISQPESH----PLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPT 2579
P P++ P R S+RI K P +L DF H S PS S FS P
Sbjct: 833 PAVPPQNSSIPAPTRVSNRIRKIPGYLQDF-----HCSL---LPSQHQSSSSNAFSTYPI 884
Query: 2578 SFNHSSILGAT-YTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSL 2402
S + S AT Y F ++S EP +F QACKS W +AM+ EL ALE N TW + L
Sbjct: 885 SSSLSYTNCATAYKHFCLSISTTIEPKTFKQACKSDCWKEAMKSELAALELNRTWSIVDL 944
Query: 2401 PPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVI 2222
P GK IGCKWVYK+K DG++ERYKARLVAKG+ Q GVDY D+FSPVAKL TV+ ++
Sbjct: 945 PTGKNPIGCKWVYKIKHNADGSIERYKARLVAKGYTQMEGVDYFDTFSPVAKLTTVKTLL 1004
Query: 2221 ALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGY----SKAKDGEVCHLQRSLYGLKQ 2054
ALA+IKGW L QLDVNNAFLHG L+E++YM P G S + +VC L +SLYGLKQ
Sbjct: 1005 ALASIKGWFLEQLDVNNAFLHGDLNEEVYMSLPPGVIIPNSCSNTPKVCRLHKSLYGLKQ 1064
Query: 2053 ASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALK 1874
ASRQW ++ L G++QS DH LF+++ ++++G EI ++K
Sbjct: 1065 ASRQWYSKLSSALLSLGYSQSAADHSLFLKKVGSSFTALLVYVDDIVLAGNNSLEITSVK 1124
Query: 1873 RYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPG 1694
+LD F IKDLG R+F+G+EIAR+ G +LNQRKY L++L D+G L K + TP P
Sbjct: 1125 SFLDKRFQIKDLGNLRFFVGLEIARSKKGILLNQRKYTLELLQDSGNLAAKPSSTPYDPS 1184
Query: 1693 LKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLL 1514
LKL E P DP +RRLIGRLLYL TRPD+T++VQQLSQFV+SP H+ AA +L
Sbjct: 1185 LKLHDSESPPYNDPSGYRRLIGRLLYLTTTRPDITFAVQQLSQFVSSPREVHFQAATKVL 1244
Query: 1513 RYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTT 1334
RYLK SP+ GLF+S+ SSL L + D+DWA+C TRKS+TG+C+FLG+ L+SWK+KKQ+T
Sbjct: 1245 RYLKASPAKGLFFSSSSSLKLSGFSDSDWATCAITRKSITGYCVFLGTSLISWKSKKQST 1304
Query: 1333 VSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERT 1154
VSRSS+EAEYRAL S CE+QWL YL DLG+ P ++CDN++AI++ NP FHERT
Sbjct: 1305 VSRSSSEAEYRALASLSCELQWLHYLFKDLGIKFDAPAMVYCDNKSAIYLAHNPSFHERT 1364
Query: 1153 KHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT* 974
KH+EIDCH+VR +SG +HL V S QLAD TK L +AF L SKLGL D+H+P
Sbjct: 1365 KHIEIDCHVVRERIQSGLIHLLPVPSSSQLADVLTKQLSSSAFASLISKLGLLDIHSPAC 1424
Query: 973 GG 968
GG
Sbjct: 1425 GG 1426
Score = 143 bits (361), Expect = 7e-31
Identities = 76/216 (35%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Frame = -3
Query: 628 DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYD 449
+P L+ +++P + LV+ L G NY SW RSM IAL +K K+ F++G +E P+ P Y+
Sbjct: 15 NPYYLHPNENPAVVLVTPLLDGKNYHSWLRSMKIALLSKNKMKFVDGTLEQPRVSDPLYE 74
Query: 448 QWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANM 269
W + + MV+SWI SIS D+ + I+ D A +W D+ RF + I L+ +I +
Sbjct: 75 PWIRCNSMVLSWIQRSISPDIAKSIIWFDHASAVWKDLEFRFSHGDMFKISDLQEEILRL 134
Query: 268 NQGNMSVVEYFTKLKRLWDELACIMPLPACE----------SDTRKLIDERDMNRKLMQF 119
+QG++ + Y+T+LK L +E+ P+ C +D +K E+D +++F
Sbjct: 135 HQGSLDISSYYTQLKSLSEEIEIYRPVRDCTCAIPCSCGAVADMKK-YREQDC---VLKF 190
Query: 118 LMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEK 11
L GL+E Y VR+Q+++M+PLP + K +S+ L+ E+
Sbjct: 191 LKGLNEQYSHVRSQIMMMEPLPPLHKVFSLVLQQER 226
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 645 bits (1665), Expect = 0.0
Identities = 342/697 (49%), Positives = 446/697 (63%), Gaps = 15/697 (2%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFP-- 2840
CL Y++ H++K RA+ C+FLG+ KGY L++L H LL SR+V+F ED FP
Sbjct: 635 CLCYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSF 694
Query: 2839 -------FAS-IPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISKPPA 2684
F+S +P+ N +S S P PLRRS+R +PP
Sbjct: 695 TKPHSPSFSSPVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSPP--PLRRSTRPRRPPT 752
Query: 2683 WLSDF-----ITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLS 2519
+L DF T++ HSST + P HS + L SF+H ++ ++S
Sbjct: 753 YLQDFHGAFTSTSTAHSSTGIRHPLHSFL----SYDLLSPSFHH----------YVFSIS 798
Query: 2518 NVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDG 2339
+V EP +F++A KS W+ AM E+ ALE NNTWVLT+LPP K AIGC+WVYKVK + DG
Sbjct: 799 SVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADG 858
Query: 2338 TVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLH 2159
+++RYKARLVAKG+ Q G+D+ D+FSPVAKL TVRL+++LA I W L QLDVNNAFLH
Sbjct: 859 SIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLH 918
Query: 2158 GYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDH 1979
G L+E++YM P G + + G+VC LQRSLYGLKQASRQW A L Q G+ S DH
Sbjct: 919 GDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDH 978
Query: 1978 CLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIAR 1799
LF++ S ++++G L+EI L L F IKDLG +YFLG+E+AR
Sbjct: 979 SLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVAR 1038
Query: 1798 NTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLL 1619
N G L QRKY+LD+L D GML K TP+ + L A G PL D +RRL+GRL+
Sbjct: 1039 NHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLI 1098
Query: 1618 YLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYC 1439
YL TRPD+TY+VQQLSQFV++P T+H A +LRYLKG+P G+F S +SS+ L A+
Sbjct: 1099 YLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFS 1158
Query: 1438 DADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSY 1259
D+DWA C DTR+S+TGF ++LG L+SWK+KKQ TVSRSS+EAEYRAL + CE+QWLSY
Sbjct: 1159 DSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSY 1218
Query: 1258 LCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVS 1079
L D + +P L+CDNQ+A+ I NPVFHERTKH+EIDCH+VR+ +G L L VS
Sbjct: 1219 LLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVS 1278
Query: 1078 SRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 968
S QLAD TK L F CSKLG+ ++H+ GG
Sbjct: 1279 SSQQLADILTKPLSPFVFRSHCSKLGMLNIHSQLEGG 1315
Score = 100 bits (250), Expect = 1e-17
Identities = 49/146 (33%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Frame = -3
Query: 427 MVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSV 248
MV+SW+++S+S + + ++ D A D+W D+ R+ + + L+ + +++ QG++SV
Sbjct: 1 MVVSWLVHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSV 60
Query: 247 VEYFTKLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQV 86
EYFTKL+ LWDEL P P C + +I +R + + MQFL GL++ Y+ V
Sbjct: 61 TEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNV 120
Query: 85 RNQLLLMDPLPSVDKAYSMALRVEKQ 8
++ +LLM+ P + K +S ++ E+Q
Sbjct: 121 KSHVLLME--PPISKIFSYVVQQERQ 144
>gb|PNX74277.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 762
Score = 620 bits (1599), Expect = 0.0
Identities = 327/718 (45%), Positives = 433/718 (60%), Gaps = 39/718 (5%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CLSYA H++KF +RA K +FLG+ G KGY LYDL +H + SR+VVF+E FP
Sbjct: 45 CLSYATTLQAHRTKFDSRARKAIFLGFKDGTKGYILYDLSSHDIFVSRNVVFYETYFPLR 104
Query: 2833 -----------SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISKPP 2687
S P+PSN + P S + IS P
Sbjct: 105 HSQPVHNASDFSKPLPSNSILDDPVSHTHNSLPLPVMFEPDSTSPSSVNIEPDRTISSPA 164
Query: 2686 AWLSDFITNSVHSSTPMASPSHSAG----------------------PDSGDFSLAPTSF 2573
+ +++S H +A P + S + +++ ++
Sbjct: 165 SSSHTPLSSSSHDRPNLAPPPYHDNLRRSTRTITRPGYLEDYHCYSVTGSVNNNISHPNY 224
Query: 2572 NHSSILG-----ATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLT 2408
SS+L Y +F ++S + EP +FSQA K W AM EL AL++N TW +
Sbjct: 225 PLSSVLSYDNCVPEYKSFCCSISAIIEPKTFSQASKLDCWRKAMDAELLALDENKTWSVV 284
Query: 2407 SLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRL 2228
LP GK IGCKWVYK+K +G++ERYKARLVAKG+ Q G+DY D+FSPVAK+ TVR
Sbjct: 285 DLPHGKTPIGCKWVYKIKYHANGSIERYKARLVAKGYTQMEGIDYFDTFSPVAKITTVRF 344
Query: 2227 VIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKA-KDGEVCHLQRSLYGLKQA 2051
++ALA+IKGW L QLDVNNAFLHG L+E++YM P GYS A +VC L +SLYGLKQA
Sbjct: 345 LLALASIKGWDLEQLDVNNAFLHGDLNEEVYMSLPPGYSSAIGSNKVCRLHKSLYGLKQA 404
Query: 2050 SRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKR 1871
SRQW ++ L FG+ QS DH L+++ + ++++G EI A+K
Sbjct: 405 SRQWYSKLSSALISFGYKQSVSDHSLYIKSTDSEFTALLVYVDDIVLAGNSSKEIQAVKH 464
Query: 1870 YLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGL 1691
+LD F IKDLG RYFLG EIAR+ G +NQRKY L++L D G L K + P P
Sbjct: 465 FLDQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYTLELLQDTGFLATKPSNIPFNPTT 524
Query: 1690 KLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLR 1511
KL + +G PL DP +RRLIGRLLYL TRPD+++SVQ LSQFV+ P H+ AA +L+
Sbjct: 525 KLSSTDGAPLKDPSSYRRLIGRLLYLTNTRPDISFSVQHLSQFVSKPLIPHYTAATRILK 584
Query: 1510 YLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTV 1331
YLK +P+ GLF+ SSL L Y D+DWA C DTRKS+TG+C+F+GS L+SWK+KKQ TV
Sbjct: 585 YLKSAPANGLFFPVSSSLKLTGYADSDWARCPDTRKSITGYCVFIGSSLISWKSKKQNTV 644
Query: 1330 SRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTK 1151
SRSS EAEYRAL S CEIQWL YL D + P +++CD+++AI++ NP FHER+K
Sbjct: 645 SRSSTEAEYRALASLTCEIQWLQYLFQDFKMKFSNPASVFCDSRSAIYLAHNPAFHERSK 704
Query: 1150 HLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 977
H+EIDCH++R +S +HL + S Q+AD FTK L AF L SKL L +H+PT
Sbjct: 705 HIEIDCHVIREKIQSQLIHLLPIPSNSQIADMFTKPLHFPAFFDLLSKLNLCSIHSPT 762
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 625 bits (1611), Expect = 0.0
Identities = 336/704 (47%), Positives = 434/704 (61%), Gaps = 22/704 (3%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPF- 2837
CL+YA+ H++KF RA K V LGY G KGY LYDL +H SR+V F E +FPF
Sbjct: 313 CLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFH 372
Query: 2836 ----ASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPIS-------------QPESHPLRRS 2708
S+ PS +P S P P R S
Sbjct: 373 TPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPSRHS 432
Query: 2707 SRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLA 2528
+R+ +PP++L D+ + + + + S S + P S +L +Y F
Sbjct: 433 TRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPHSISSTLT------YDFCSPSYKQFCL 486
Query: 2527 NLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMR 2348
++S EP +++QA K W+ AM+ EL AL+ N TW + LP GKR IGCKWVYK+K
Sbjct: 487 SVSTNFEPHTYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYL 546
Query: 2347 PDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNA 2168
DG++ERYKARLVAKG+ Q G+DYLD++SPVAKL TVR+++AL IKGW L QLDVNNA
Sbjct: 547 SDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVNNA 606
Query: 2167 FLHGYLDEDIYMLPPEGYSKAKDG----EVCHLQRSLYGLKQASRQWNAEFCLKLQQFGF 2000
FLHG L E++YM P G S +VC L +S+YGLKQASRQW ++ L G+
Sbjct: 607 FLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSIYGLKQASRQWYSKLSSALISMGY 666
Query: 1999 TQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYF 1820
+ S DH LF++ S +I++G EID +K L F IKDLG RYF
Sbjct: 667 SPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNLRYF 726
Query: 1819 LGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFR 1640
LG+EIAR+ G +LNQRKY L+IL D G L K + TP P LKL + G P D +R
Sbjct: 727 LGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDETAYR 786
Query: 1639 RLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSS 1460
RLIGRLLYL TRPD++Y VQQLSQFV+ P H+ AA +LRYLKGS GLFYS+ +S
Sbjct: 787 RLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATRILRYLKGSHGRGLFYSSSAS 846
Query: 1459 LCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVC 1280
L L A+ D+DWASC +RKS+TGFC+FLGS L+SW++KKQ+T+SRSS+EAEYRAL S C
Sbjct: 847 LKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSKKQSTISRSSSEAEYRALASLTC 906
Query: 1279 EIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGF 1100
E+QWL YL DL S+ P +++CDN++AI++ NP FHERTKH+EIDCH++R +S
Sbjct: 907 ELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTFHERTKHIEIDCHVIREKIQSRL 966
Query: 1099 LHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 968
LHL V S QLAD FTK L +F SKLGL+D+H+ GG
Sbjct: 967 LHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGLYDVHSSACGG 1010
>gb|OMO65653.1| hypothetical protein CCACVL1_21443 [Corchorus capsularis]
Length = 1245
Score = 630 bits (1624), Expect = 0.0
Identities = 331/692 (47%), Positives = 435/692 (62%), Gaps = 13/692 (1%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL YA KF+ R+ KC+F+GY G KGYR+YDL + SRDV F+E+ FPF
Sbjct: 558 CLCYALQKPKPNDKFSPRSSKCIFVGYPNGTKGYRVYDLTTKKIFVSRDVRFYENQFPFE 617
Query: 2833 SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPIS----QPESHP--------LRRSSRISKP 2690
+ +N S P + QP+ HP R R
Sbjct: 618 NTSTSTNDQTVVPLPALEDTDLSITHDSIPPNPPQEQPQPHPPTNPPNQPSTRPQRTKTR 677
Query: 2689 PAWLSDFITNSVHSSTPMASPSHSAGPDSGD-FSLAPTSFNHSSILGATYTAFLANLSNV 2513
P L D + N+ +S +H A SG +SL+ +F +++ AFLA +S
Sbjct: 678 PKRLDDCVCNNSKVDNSPSSLTHEAS--SGTLYSLS--NFISYDNFHSSHKAFLAAISLR 733
Query: 2512 EEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTV 2333
+EP SFSQA KS W +AMQ+EL ALE NNTW L +LPP K+ IGCKW++K+K + DGT+
Sbjct: 734 DEPKSFSQAVKSPQWREAMQKELAALENNNTWTLETLPPRKKPIGCKWIFKIKYKSDGTI 793
Query: 2332 ERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGY 2153
ERYKAR VAKG++Q G+D+ ++F+PVAKLVTVR ++A+A IK W L QLDVNNAFLHG
Sbjct: 794 ERYKARFVAKGYNQIEGMDFHETFAPVAKLVTVRCLLAIAAIKNWELHQLDVNNAFLHGD 853
Query: 2152 LDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCL 1973
LDE++YM P GY D VC +++SLYGLKQASR W A+F L +FGF QS D+ L
Sbjct: 854 LDEEVYMSLPPGYGDKNDSRVCRVRKSLYGLKQASRNWFAKFFAALLEFGFIQSTVDYSL 913
Query: 1972 FVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNT 1793
F + +II+G I +LK++LD F IKDLG +YFLG+E+AR++
Sbjct: 914 FTLTTGSSFLVVLVYVDDLIIAGDDSVRIRSLKQHLDSRFHIKDLGPLKYFLGIEVARSS 973
Query: 1792 DGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYL 1613
G L QRKY LDIL + GM K + P+ L G P+ DP ++RRL+GRL+YL
Sbjct: 974 SGIFLCQRKYTLDILEECGMTDAKPSAFPMEQKHNLTHDTGPPVQDPMQYRRLVGRLIYL 1033
Query: 1612 NLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDA 1433
+TRP+++Y+V LSQF+N P H DAA+ +LRYLK P G+F+S+ SS L + D+
Sbjct: 1034 TITRPEISYAVHILSQFMNDPRQPHLDAALRVLRYLKSCPGQGIFFSSSSSPHLTGFSDS 1093
Query: 1432 DWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLC 1253
DWASC TR+S TG+ LGS +SWKTKKQTTVSRSSAEAEYRA+ + V E+ WL L
Sbjct: 1094 DWASCPQTRRSTTGYITMLGSSPISWKTKKQTTVSRSSAEAEYRAMAATVSELLWLRSLL 1153
Query: 1252 ADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSR 1073
LG+ P+ L+CDNQ AIHI NPVFHERTKH+E+DCH +R+ ++ + H+SS+
Sbjct: 1154 QTLGIPHQQPMALFCDNQVAIHIATNPVFHERTKHIELDCHFIRSHIQAKSIQTSHISSK 1213
Query: 1072 LQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 977
LQLAD FTK+LGR F L KLG+F+LH PT
Sbjct: 1214 LQLADIFTKALGRDQFQFLLRKLGIFNLHAPT 1245
Score = 182 bits (463), Expect = 3e-43
Identities = 93/209 (44%), Positives = 132/209 (63%), Gaps = 1/209 (0%)
Frame = -3
Query: 625 PLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQ 446
P L SDHPG LVS L G+NY +W R+M AL A+ K GF++G + P+ SP
Sbjct: 29 PYLLQPSDHPGAILVSCPLNGDNYPTWARAMTNALRARNKYGFVDGSLAKPEATSPDVST 88
Query: 445 WRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMN 266
W K + MVISWI NS+S DL ++ Y D+A+++W D+ +RF N P I QL+RD+A
Sbjct: 89 WEKCNSMVISWIFNSLSSDLHNSVAYVDTAREMWLDLEERFSQGNAPRINQLKRDLALTF 148
Query: 265 QGNMSVVEYFTKLKRLWDELACIMPLPACESDTRK-LIDERDMNRKLMQFLMGLHESYDQ 89
Q NMSV Y+TKLK +WDEL +P C K L+ ER+ K+ QF+MGL +S+
Sbjct: 149 QINMSVAAYYTKLKGIWDELQTYSTIPPCTCGAAKELLLERE-REKVHQFIMGLDDSFRS 207
Query: 88 VRNQLLLMDPLPSVDKAYSMALRVEKQRN 2
V + +L ++PLPS+ KAY++ R E++ +
Sbjct: 208 VSSHILNIEPLPSLSKAYALVTRAERENS 236
>gb|PNY00469.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 778
Score = 614 bits (1583), Expect = 0.0
Identities = 329/736 (44%), Positives = 445/736 (60%), Gaps = 57/736 (7%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CLS+A H++KF +RA KCVF+GY G KGY LYDL +H++ SR+VVF+E PF
Sbjct: 45 CLSFATTLQAHRTKFDSRARKCVFIGYKDGTKGYILYDLHSHNIFLSRNVVFYEHVLPFK 104
Query: 2833 SIPVPS---NXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLRRSSRISKP--PAWLSDF 2669
S+P P+ N + P+S + + ++ P P S
Sbjct: 105 SVPGPTSSHNSPTFPLYDDPLDISHNPCVDTFPLSTGSLDNVSLNPALTPPLVPTLDSSP 164
Query: 2668 ITNSVHSSTPMASPS----HSAGPD----------------------------------- 2606
+T ++++TP A PS HSA
Sbjct: 165 LTPPINTATP-APPSFDSAHSAADQPSPNLDSVPVPSEPSIPLPTRVSTRVTRPPSYLQD 223
Query: 2605 ------SGDFSLAPTSFNH--SSIL-----GATYTAFLANLSNVEEPSSFSQACKSADWV 2465
SG + ++ H SS+L Y F ++S+ EP++++QA K W
Sbjct: 224 YHCNIKSGCTNQVSSNIVHPLSSVLSYNTCSPAYKLFCCSISSTIEPTTYNQASKFDCWK 283
Query: 2464 DAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEH 2285
AM E+TALE N TW + LP GK IGCKWVYK+K +GT+ERYKARLVAKG+ Q
Sbjct: 284 KAMDAEITALELNKTWTVVDLPCGKVPIGCKWVYKIKYHANGTIERYKARLVAKGYTQME 343
Query: 2284 GVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKA 2105
GVDY D+FSPVAK+ TVR+++A+A ++GW L QLDVNNAFLHG L E++YM P GY A
Sbjct: 344 GVDYFDTFSPVAKMTTVRVLLAVAAVRGWHLEQLDVNNAFLHGDLHEEVYMSLPPGYD-A 402
Query: 2104 KDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXX 1925
+VC L +SLYGLKQASRQW ++ L G+ S DH L+V+
Sbjct: 403 TPSKVCKLNKSLYGLKQASRQWYSKLSAALISLGYQASQADHSLYVKSHGTSFTALLVYV 462
Query: 1924 XXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILH 1745
++++GT + EI ++K +LD F IKDLG R+FLG+EIAR++ G LNQRKY L++L
Sbjct: 463 DDIVLAGTSIEEIKSVKLFLDQQFKIKDLGPLRFFLGLEIARSSSGIFLNQRKYTLELLE 522
Query: 1744 DAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQ 1565
D G L K A PL P KL A +G P DP +RRLIGRLLYL TRPD++++VQ LSQ
Sbjct: 523 DTGFLGSKPATVPLDPHTKLSATDGVPFDDPSGYRRLIGRLLYLTHTRPDISFAVQHLSQ 582
Query: 1564 FVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFC 1385
+V++P H+ AA +LRYLK P+ G+ +S+HS L L + D+DWA C +TR+S+TG+C
Sbjct: 583 YVSTPLVPHYQAATRILRYLKSCPAKGVLFSSHSPLQLHGFADSDWACCPNTRRSVTGYC 642
Query: 1384 IFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCD 1205
+ LGS L+SWK+KKQ TVSRSS EAEYRAL S CE+QWL YL DL ++ P +++CD
Sbjct: 643 VLLGSSLISWKSKKQNTVSRSSTEAEYRALASLTCELQWLQYLFQDLHITFPQSASVYCD 702
Query: 1204 NQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAF 1025
N++AI++ NP FHER+KH+E+DCH++R +S +HL V S+ QLAD FTK L AF
Sbjct: 703 NKSAIYLAHNPTFHERSKHIELDCHIIREKLQSKLIHLLSVPSKSQLADVFTKPLHSPAF 762
Query: 1024 LLLCSKLGLFDLHNPT 977
+ SKLGL +H+PT
Sbjct: 763 SSMLSKLGLCSIHHPT 778
>dbj|GAU41679.1| hypothetical protein TSUD_272630 [Trifolium subterraneum]
Length = 1178
Score = 627 bits (1616), Expect = 0.0
Identities = 329/716 (45%), Positives = 442/716 (61%), Gaps = 37/716 (5%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CLSYA H++KF +RA K +FLGY G KGY LYDL +H + SR+V+F+E FPF
Sbjct: 476 CLSYATTLQAHRTKFVSRARKAIFLGYKDGTKGYILYDLHSHEIFVSRNVIFYETDFPFH 535
Query: 2833 -----------------------------SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPI 2741
++P+P S PI
Sbjct: 536 LSNSVKTDSASPASHLNHTLLYDAEPDPNALPIP---VMHEPDLTLSPIIGPSYNDSTPI 592
Query: 2740 SQPESHP------LRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPT 2579
+ PES P LR+SSR+ + P L F H T + + HSA + + L+
Sbjct: 593 NSPESSPIPNPAPLRKSSRVIQRPRHLEGF-----HCETLIGT--HSAASSNTVYPLSSV 645
Query: 2578 -SFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSL 2402
S+N+ + Y A ++S + EP +++QA K W +AM EL AL++N TW + L
Sbjct: 646 LSYNNCA---PNYHALCCSISAIVEPKTYTQASKFECWRNAMNAELLALDENKTWSVVDL 702
Query: 2401 PPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVI 2222
P GK +GCKWVYKVK +G++ERYKARLVAKG+ Q GVDY D+FSPVAK+ TVR+++
Sbjct: 703 PNGKVPVGCKWVYKVKYHANGSIERYKARLVAKGYTQLEGVDYFDTFSPVAKITTVRVLL 762
Query: 2221 ALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDG-EVCHLQRSLYGLKQASR 2045
ALA+IKGW L QLDVNNAFLHG L+ED+YM P G++ + +VC L +S+YGLKQASR
Sbjct: 763 ALASIKGWHLEQLDVNNAFLHGDLNEDVYMSLPPGFAATNESNKVCKLHKSIYGLKQASR 822
Query: 2044 QWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYL 1865
QW ++ L G+T S DH L+++ + ++++G + EI +K +L
Sbjct: 823 QWYSKLSSSLVSLGYTPSQSDHSLYIKSTTNSFTALLVYVDDIVLAGNSIHEIQTVKLFL 882
Query: 1864 DDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKL 1685
D F IKDLG RYFL +EIAR+ G +NQRKY L++L D G+L K + P P KL
Sbjct: 883 DQKFKIKDLGKLRYFLVLEIARSDTGIFVNQRKYTLELLEDVGLLGTKPSSIPFHPTTKL 942
Query: 1684 RAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYL 1505
+ +G PL DP +RRLIGRLLYL TRPD+++SVQ LSQFV+ P H++AAMH+L+YL
Sbjct: 943 SSTDGAPLDDPSSYRRLIGRLLYLTHTRPDISFSVQHLSQFVSKPLVPHYNAAMHILKYL 1002
Query: 1504 KGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSR 1325
K P+ G+F SA SSL + A+ D+DWA C +TRKS+ GFC+ LGS L+SWK+KKQ TVSR
Sbjct: 1003 KSDPAKGIFLSASSSLKISAFADSDWARCPETRKSIIGFCVLLGSSLISWKSKKQNTVSR 1062
Query: 1324 SSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHL 1145
SS EAEYRAL S CEIQWL Y+ D + P ++CDN++AI++ NP FHER+KH+
Sbjct: 1063 SSTEAEYRALASLTCEIQWLQYIFQDFKIIFSNPAYVFCDNKSAIYLAHNPTFHERSKHI 1122
Query: 1144 EIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 977
E+DCH++R +S +HL V + QLAD FTK L AF SKLGL +H+PT
Sbjct: 1123 ELDCHVIREKIQSKLIHLLPVPTTSQLADVFTKPLNHPAFSSFLSKLGLCSIHSPT 1178
Score = 142 bits (359), Expect = 1e-30
Identities = 75/216 (34%), Positives = 126/216 (58%), Gaps = 9/216 (4%)
Frame = -3
Query: 628 DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYD 449
+P L+ +++P + LVS L NY +W RSM IAL +K K FI+G + P P Y
Sbjct: 13 NPYYLHPNENPAVILVSPPLDHKNYHTWSRSMQIALISKNKDKFIDGTLVKPSPLDPLYS 72
Query: 448 QWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANM 269
W + + MV++WI S+S + + ++ DSA LW ++ RF + I L+ ++ +
Sbjct: 73 PWIRCNTMVLAWIHRSLSDSIARSVLWIDSAASLWKNLRTRFSQGDIFRISDLQEELYRL 132
Query: 268 NQGNMSVVEYFTKLKRLWDELACIMPLPACES---------DTRKLIDERDMNRKLMQFL 116
QGN+ V +YFTKL+ LWDEL P+P C+ ++ KL E+D +++FL
Sbjct: 133 RQGNLDVSDYFTKLQVLWDELENYRPIPLCKCSIACTCGAVESFKLYREQDY---VIRFL 189
Query: 115 MGLHESYDQVRNQLLLMDPLPSVDKAYSMALRVEKQ 8
GL++ + ++Q++L++PLP VD +SM ++ E++
Sbjct: 190 KGLNDRFSNTKSQIMLINPLPDVDTVFSMLIQQERE 225
>gb|KYP42321.1| Copia protein [Cajanus cajan]
Length = 1456
Score = 630 bits (1624), Expect = 0.0
Identities = 334/736 (45%), Positives = 451/736 (61%), Gaps = 57/736 (7%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL++A ++K RA KC+FLGY G KG+ L++L N S L SRDV+F+E FP++
Sbjct: 732 CLAFATTLSSKRTKLDRRASKCIFLGYKNGTKGFLLFNLHNKSFLISRDVLFYEKIFPYS 791
Query: 2833 S-------------------------------------------IPVPSNXXXXXXXXXX 2783
+ P+PS+
Sbjct: 792 AHVPSMSASDSLLLDVVKDNDTTIYSDPFPTTTFSHGSPSIPLDTPLPSSETTISTDRPP 851
Query: 2782 XXXXXXXXTSSAPISQPE--------------SHPLRRSSRISKPPAWLSDFITNSVHSS 2645
+A +S PE R S+RI KPP +L ++ ++ SS
Sbjct: 852 FSPINTCPIPTATLSTPELPSSNTTNDASQVVMPQTRVSTRIRKPPRYLQEYYCENLASS 911
Query: 2644 TPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWV 2465
+ ++ + +SF + ++T+F ++S EP+SF +A W
Sbjct: 912 SAASNCLYPL-----------SSFVTYNNCSPSHTSFCLSISAQHEPTSFKEANSEECWR 960
Query: 2464 DAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEH 2285
AM+ EL ALE+N TW L LP GKR +GCKWVY+VK + DG+VERYKARLVAKGF Q
Sbjct: 961 RAMEAELQALEKNQTWSLVRLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTE 1020
Query: 2284 GVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKA 2105
GVDY ++FSPV KL TVR +++LA W L QLDV+NAFLHG L E++YM PP G+ +
Sbjct: 1021 GVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFKLS 1080
Query: 2104 KDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXX 1925
VC L +SLYGLKQASRQWN + L F QS DH LF+++S
Sbjct: 1081 HPRLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLVYV 1140
Query: 1924 XXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILH 1745
V+++G ++EI A+K YL F IKDLG ++FLG+EIAR+ G +LNQRKY L++L
Sbjct: 1141 DDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLEIARSQSGLILNQRKYCLELLS 1200
Query: 1744 DAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQ 1565
+ G+ CK TP+ +KL A EG PL DP FRRLIGRLLYL TRPD++++VQQLSQ
Sbjct: 1201 EHGLTDCKPVSTPIDASVKLYASEGLPLDDPTIFRRLIGRLLYLTNTRPDISFAVQQLSQ 1260
Query: 1564 FVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFC 1385
FV+SP +H+ AA+ +LRYLK SP++GLFY + + ++A+ D+DWASC +TR+S+TGFC
Sbjct: 1261 FVDSPRATHFQAALRILRYLKSSPALGLFYPSQTEHRIQAFSDSDWASCPNTRRSVTGFC 1320
Query: 1384 IFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCD 1205
IF GS L+SWK+KKQ+TVSRSS+EAEYRAL S CE+QWL +LC DL ++IPTP +++CD
Sbjct: 1321 IFYGSALISWKSKKQSTVSRSSSEAEYRALASVTCELQWLLFLCHDLSINIPTPFSIFCD 1380
Query: 1204 NQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAF 1025
+Q+AI+I +NP FHERTKH+E+DCHL R + G +HL HV S+ QLAD FTK+L F
Sbjct: 1381 SQSAIYIAKNPTFHERTKHIEVDCHLTRLKIQQGLIHLFHVPSKSQLADVFTKALYPRNF 1440
Query: 1024 LLLCSKLGLFDLHNPT 977
SKL L D++NPT
Sbjct: 1441 TEAVSKLCLIDIYNPT 1456
Score = 114 bits (286), Expect = 6e-22
Identities = 59/183 (32%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Frame = -3
Query: 535 MLIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISWILNSISKDLVDAFIYCDSA 356
ML AL +K K FI+G + P P WR+ + V+SW++ S++ + + +Y D+A
Sbjct: 1 MLTALESKNKEQFIDGSLPSPPTSDPLRSTWRRCNKTVMSWLIRSMTPSIAQSVLYMDTA 60
Query: 355 KDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFTKLKRLWDELACIMPLPACE 176
++W D+ +RF + I L+ + QG+ +V +Y+T LK LW +L + C
Sbjct: 61 AEIWKDLCERFSHGDKFRISDLQASVHECKQGDSTVSQYYTHLKTLWKQLEQYRSVLICS 120
Query: 175 SDT-------RKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKAYSMALRV 17
D K+ ER+ + +++FL GL+E Y QVR+ +L+MDP+PS+ K +S+ +
Sbjct: 121 CDNPCSCGILLKIKKERE-DDCVIKFLRGLNEEYSQVRSNILMMDPMPSITKTFSLIQQH 179
Query: 16 EKQ 8
E++
Sbjct: 180 ERE 182
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 612 bits (1578), Expect = 0.0
Identities = 318/696 (45%), Positives = 437/696 (62%), Gaps = 14/696 (2%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL+YA H ++ KF R +CVFLG+ KG LYDL++ SR V +FE FPF
Sbjct: 316 CLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFL 375
Query: 2833 ---------SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHP-LRRSSRISKPPA 2684
+I +P + +S+P+S P +R+S+R K P+
Sbjct: 376 PTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVRKSTRPRKLPS 435
Query: 2683 WLSDFITN--SVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVE 2510
+L D+ + H+S ++ P +S +L+P+ AF ++S+++
Sbjct: 436 YLHDYHHTLLTTHNSPTISQPLYSIHNHISYSNLSPSQ-----------KAFSLSISSIK 484
Query: 2509 EPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVE 2330
EP+S+ +A + W A+Q ELTALE+NNTW+LT LPP K+ +GCKWV+K+K DGT+E
Sbjct: 485 EPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIE 544
Query: 2329 RYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYL 2150
R+KARLVAKG+ Q +DYLD+FSPV K+ TVR ++A+AT K W + QLDVN FLHG L
Sbjct: 545 RHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDL 604
Query: 2149 DEDIYMLPPEGY--SKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHC 1976
E++YM PP G S + VC L +SLYGLKQASRQWNA+ L GF QS D+
Sbjct: 605 HEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYS 664
Query: 1975 LFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARN 1796
LF +Q ++++G +EI+ +K LD FTIKDLG +YFLGME+AR+
Sbjct: 665 LFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARS 724
Query: 1795 TDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLY 1616
+ G L QRKY LD++ D G+L K +P+ +KL G PL DP ++RRL+GRL+Y
Sbjct: 725 STGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIY 784
Query: 1615 LNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCD 1436
L TR D+++SV LSQF++ P H+ AA+ +L+Y+K +P GLF+ + S L L+ Y D
Sbjct: 785 LTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSD 844
Query: 1435 ADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYL 1256
+DWASC DTR+S+TGF FLG L+SWK+KKQ TVS+SSAEAEYRAL CE QWLSYL
Sbjct: 845 SDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYL 904
Query: 1255 CADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSS 1076
D GL P+ L+CDNQ+A+HI NPVFHERTK++E+DCH+VR + G +HL +S+
Sbjct: 905 LHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQVGLIHLLPIST 964
Query: 1075 RLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 968
QLAD FTK+L F + KLG+FD+H+ GG
Sbjct: 965 ADQLADVFTKALSLRPFEQIIFKLGMFDIHSSLRGG 1000
>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
from transposon TNT 1-94 [Gossypium raimondii]
Length = 683
Score = 600 bits (1548), Expect = 0.0
Identities = 318/689 (46%), Positives = 429/689 (62%), Gaps = 11/689 (1%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CLS+A+ H+ KF RA +CVFLGY KGY L D++ ++ SR+V F E FPF
Sbjct: 7 CLSFASTLSAHRKKFDPRAKQCVFLGYKPHVKGYILLDIETRAIFVSRNVTFHETIFPFL 66
Query: 2833 -------SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHPLR--RSSRISKPPAW 2681
+ PV S+ S P + P R R +PP++
Sbjct: 67 QHSLNNPTTPVGLLASDTIYDSPISPPQPSSTDQSSSTSHPPTQPSTSSRPQRNRRPPSY 126
Query: 2680 LSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPS 2501
L D+ + ++T HS +L+P + + + A+ EP
Sbjct: 127 LQDYQHYQLPAATNHPGTPHSIFNCISYHNLSPQHLHFTLAISASI-----------EPK 175
Query: 2500 SFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYK 2321
++ QA K W +AMQ E+ ALEQNNTW +T+LPPGK GCKWV++VK R DG+ ERYK
Sbjct: 176 TYKQASKFTHWNEAMQAEINALEQNNTWTMTTLPPGKTPXGCKWVFRVKHRADGSTERYK 235
Query: 2320 ARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDED 2141
ARLVAKG+ Q GVDY D+FSPVAK+ TVRL++ALAT + W + QLDVNNAFLHG L+ED
Sbjct: 236 ARLVAKGYTQI-GVDYFDTFSPVAKITTVRLLLALATSRHWHIQQLDVNNAFLHGDLNED 294
Query: 2140 IYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQ 1961
+YMLPP G+S +VC L +S+YGLKQASRQW ++ L G+ QS DH +F ++
Sbjct: 295 VYMLPPPGFSHDST-KVCKLHKSIYGLKQASRQWFSKLTTALISLGYIQSTADHSMFTKK 353
Query: 1960 SXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSV 1781
+I++GT EI +K++LD F IKDLG +YFLG+E+AR + G
Sbjct: 354 HSEDFTVLLIYVDDIILTGTSSPEIMKVKQFLDTTFRIKDLGDLKYFLGLEVARTSQGIH 413
Query: 1780 LNQRKYVLDILHDAGMLHCKAAITPLPPG--LKLRAKEGDPLVDPERFRRLIGRLLYLNL 1607
++QRKY L+IL ++G + CK A TP+ KL + +G+ L D +R+L+G+LLYL
Sbjct: 414 ISQRKYALEILQESGFIECKPAKTPMATKSVYKLTSTDGELLSDITSYRQLVGKLLYLTS 473
Query: 1606 TRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADW 1427
TR D+T++VQQLSQF++ P T+H AA +LRYLKG PS GLFY A SS L+A+ D+DW
Sbjct: 474 TRLDLTFAVQQLSQFMDKPTTNHLQAAHRVLRYLKGCPSTGLFYPASSSFELKAFSDSDW 533
Query: 1426 ASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCAD 1247
A C +TR+S+TG+CIF G L+SW+ KKQ TVSRSS+EAEYRAL S VCE+QWL YL D
Sbjct: 534 AGCPETRRSITGYCIFFGEALISWRAKKQPTVSRSSSEAEYRALASTVCEVQWLHYLLCD 593
Query: 1246 LGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQ 1067
L + I ++CDN++ I I NP FHERTKH+EIDCH+VR + +HL +S Q
Sbjct: 594 LHVPISHATPVFCDNKSTIQIASNPTFHERTKHIEIDCHIVREKLQKDIVHLLPCTSSAQ 653
Query: 1066 LADFFTKSLGRAAFLLLCSKLGLFDLHNP 980
LAD FTK+L F + SKLG+ ++H+P
Sbjct: 654 LADLFTKALAAQPFQDMISKLGMLNIHSP 682
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 615 bits (1587), Expect = 0.0
Identities = 335/700 (47%), Positives = 437/700 (62%), Gaps = 18/700 (2%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFP-- 2840
CL Y++ H++K RA+ C+FLG+ KGY L +L H LL S++V+F ED FP
Sbjct: 456 CLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSF 515
Query: 2839 -------FAS-IPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESH----PLRRSSRIS 2696
F+S +P+P N SS P P+ H PLRRS+R
Sbjct: 516 TKPNSPSFSSPVPIPYNYADYPSFPSSSIVE-----SSEP-PPPDQHSSPPPLRRSTRPR 569
Query: 2695 KPPAWLSDF----ITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLA 2528
+PP +L DF + HSST + P HS + SF+H ++
Sbjct: 570 RPPTYLQDFHGAFTSTGPHSSTGIRHPLHSFI----SYDRLSPSFHH----------YVF 615
Query: 2527 NLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMR 2348
++S+V +P +F +A KS W+ AM E++ALE NNTWVLT+LPP K AIGC+WVYKVK +
Sbjct: 616 SISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHK 675
Query: 2347 PDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNA 2168
DG+++RYKARLVAKG+ Q G+D+ D+FSPVAKL TVRL+I+LA I L QLDVNN+
Sbjct: 676 ADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNS 735
Query: 2167 FLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSG 1988
FLHG L+E++YM P G + + G+VC LQRSLYGLKQASRQW A L Q G+ S
Sbjct: 736 FLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSP 795
Query: 1987 HDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGME 1808
DH LF++ S ++++G L+EI L L + F IKDLG +YFLG+E
Sbjct: 796 SDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLE 855
Query: 1807 IARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIG 1628
+ARN G L QRKY LD+L D GML K TP+ L A G P D +RRL+G
Sbjct: 856 VARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVG 915
Query: 1627 RLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLE 1448
RL+YL TRP + Y+VQQLSQFV++P T+H A +L YLKG+P G+F S +SS+ L
Sbjct: 916 RLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLR 975
Query: 1447 AYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQW 1268
A+ D DWA C DTR+S+TGF ++LG L+SWK+KKQ TVSRSS+EAEYRAL + CE+QW
Sbjct: 976 AFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQW 1035
Query: 1267 LSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLG 1088
LSYL D + + P L+CDNQ A+ I NP+FHERTKH+EIDCH+VR+ +G L L
Sbjct: 1036 LSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLLKLL 1095
Query: 1087 HVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 968
VSS LQLAD TK L F SKLG+ ++H+ GG
Sbjct: 1096 PVSSSLQLADILTKPLSPFVFHSHYSKLGMLNIHSQLEGG 1135
>gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifolium pratense]
Length = 865
Score = 604 bits (1558), Expect = 0.0
Identities = 320/721 (44%), Positives = 438/721 (60%), Gaps = 42/721 (5%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFP-- 2840
CL YA HP KF RA + +F+GY TGQKGY++YD + + SRDV F E +FP
Sbjct: 153 CLCYATIVHP-THKFDPRAKRGIFVGYPTGQKGYKIYDPETKTFFVSRDVKFCETNFPSI 211
Query: 2839 -----------------FASIPVPSNXXXXXXXXXXXXXXXXXXTS---------SAPIS 2738
+P P++ S ++PI
Sbjct: 212 PNTSEPNLISSHPSYEAIDDLPSPTSSHHQSQQTDIPSTHEPNSPSHITTETSSAASPIV 271
Query: 2737 QPE---SHP----------LRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGD 2597
+P +H +R+S R PP W +D+ ++ + TP + P SG
Sbjct: 272 EPTPLTTHTTDPPTPFIPQVRKSVRDKHPPIWHNDYHMSTQVNKTP-------SEPTSGS 324
Query: 2596 FSLAPTSFNHS-SILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNT 2420
+ P S S S + ++ AFLAN++ EP S+ QA W DAM EL ALEQNNT
Sbjct: 325 GTRYPLSHYLSYSRISSSNCAFLANITAHREPQSYDQAVHDPLWQDAMNAELEALEQNNT 384
Query: 2419 WVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLV 2240
W L LP G + IGCKWVYK+K + DGT+ERYKARLVAKG+ Q G+DY ++FSP AK+
Sbjct: 385 WSLVPLPSGHKPIGCKWVYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETFSPTAKVT 444
Query: 2239 TVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGL 2060
T+R ++ +A + W + QLDV NAFLHG L E +YM PP G + + VC L +SLYGL
Sbjct: 445 TLRCLLTVAAARNWFIHQLDVQNAFLHGDLHELVYMEPPPGLRRQGENVVCRLNKSLYGL 504
Query: 2059 KQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDA 1880
KQASR W + F +Q+ G+ QS D+ LF + ++++G L E+
Sbjct: 505 KQASRNWFSTFSEVIQKAGYQQSKADYSLFTKSQGTSFTAVLIYVDDILLTGNDLQEMKR 564
Query: 1879 LKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLP 1700
LK +L F IKDLG +YFLG+E +R+ G ++QRKY LDIL D+G+ + P+
Sbjct: 565 LKEFLLKRFRIKDLGNLKYFLGIEFSRSKKGIFMSQRKYALDILQDSGLTGARPDKFPME 624
Query: 1699 PGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMH 1520
LKL +G L DP ++RRL+GRL+YL +TRPD+ YSVQ LSQF++ P HWDAA+
Sbjct: 625 QNLKLTPTDGVVLNDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPHWDAALR 684
Query: 1519 LLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQ 1340
+LRY+KG+P GL +S+ + L L+A+CD+DW C TR+S+TGFC+FLG+ L+SWK+KKQ
Sbjct: 685 VLRYIKGTPGQGLLFSSTNDLTLKAFCDSDWGGCHATRRSVTGFCLFLGNSLISWKSKKQ 744
Query: 1339 TTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHE 1160
VSRSSAE+EYRA+ + E+ WL ++ DL +S TP L+CDNQAA+HI NPVFHE
Sbjct: 745 VVVSRSSAESEYRAMANTCLELTWLRFILQDLKVSQNTPTPLFCDNQAALHIAANPVFHE 804
Query: 1159 RTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNP 980
RTKH+EIDCH+VR ++G ++ +V +R QLAD FTK+LG+ F+ L SKLGL D+H+P
Sbjct: 805 RTKHIEIDCHIVREKLQAGIINPSYVPTRFQLADVFTKALGKDQFVTLRSKLGLHDIHSP 864
Query: 979 T 977
T
Sbjct: 865 T 865
>gb|PNX97998.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 964
Score = 603 bits (1554), Expect = 0.0
Identities = 339/720 (47%), Positives = 437/720 (60%), Gaps = 42/720 (5%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL +A N + + KF RA +F+GY QKGYR+YD+ + SRDV FFE FP+
Sbjct: 257 CLCFAKNMNI-QHKFDERAKPGIFVGYPFNQKGYRIYDMHTRKIYVSRDVQFFETVFPYH 315
Query: 2833 SIPVPSNXXXXXXXXXXXXXXXXXXTSSA------------------------------- 2747
+ PS S+
Sbjct: 316 DLQTPSFASDISINTQFLDYEVDDTPSNLSPASSIPPGISHHDNTIVTIPNPSVDNPSEI 375
Query: 2746 ---PISQPE-------SHPLRRSS-RISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSG 2600
P+ P+ +HP RR R P L+D + + +++ T S SA P
Sbjct: 376 PAIPVEPPQQHSPTAINHPERRYPLRHRTPSVRLTDHVCD-INNVT-----SQSAFPLKN 429
Query: 2599 DFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNT 2420
FSL+ S +H A L N+ +EP+S+SQA KSA+W +AM +E+ ALE NNT
Sbjct: 430 YFSLSNLSTSHR--------ALLVNIIENKEPTSYSQAIKSAEWREAMAKEIHALESNNT 481
Query: 2419 WVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLV 2240
WVL+ LP GK AIGCKWVYK+K DGTVERYKARLVAKG++Q HG+DY ++F+PVAKLV
Sbjct: 482 WVLSPLPNGKTAIGCKWVYKIKYHSDGTVERYKARLVAKGYNQVHGIDYHETFAPVAKLV 541
Query: 2239 TVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGL 2060
TVRL++++A IK W L QLDVNNAFL G L+E++YM P G+S VC L +S+YGL
Sbjct: 542 TVRLLLSIAAIKNWSLHQLDVNNAFLQGDLNEEVYMKLPPGFSHKGQPCVCKLNKSIYGL 601
Query: 2059 KQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDA 1880
KQASRQW ++F L Q GF QS D+ LF +S +II+G I
Sbjct: 602 KQASRQWFSKFSTTLIQKGFHQSISDYSLFTFKSNHTTIFVLVYVDDIIITGNNDDAISD 661
Query: 1879 LKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLP 1700
+K++L F+IKDLG YFLG+E++R+ G L QRKY LDIL DAG+ C+ + P+
Sbjct: 662 IKKFLAQAFSIKDLGNLSYFLGIEVSRSKKGIFLCQRKYTLDILSDAGLTGCRPSEFPME 721
Query: 1699 PGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMH 1520
L+LR +G PL DP +RRLIGRLLYL +TRPD+ Y+V LSQF+ SP T+H DAA
Sbjct: 722 QHLRLRPNDGSPLPDPTVYRRLIGRLLYLTVTRPDIQYAVNTLSQFMQSPCTTHLDAATR 781
Query: 1519 LLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQ 1340
+LRYLKGS GLF SA SSL L Y D+DWA C TR+S TG+ LGS +SWKTKKQ
Sbjct: 782 VLRYLKGSVGKGLFLSASSSLQLIGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQ 841
Query: 1339 TTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHE 1160
T+SRSSAEAEYR+L + E+QWL +L +DL ++ P P+T+ CD+QAAIHI +NPVFHE
Sbjct: 842 PTISRSSAEAEYRSLATLASELQWLKFLLSDLDIAHPLPITVHCDSQAAIHIAENPVFHE 901
Query: 1159 RTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNP 980
RTKH+EIDCH VR KSG L ++ S QLAD FTK LG A+ L KLG+ ++ P
Sbjct: 902 RTKHIEIDCHFVREKIKSGLLRPSYLRSFDQLADIFTKPLGGDAYKRLLGKLGVLEISIP 961
Score = 63.9 bits (154), Expect = 2e-06
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = -3
Query: 217 WDELACIMPLPACESDTRKLIDERDMNRKLMQFLMGLHESYDQVRNQLLLMDPLPSVDKA 38
WDEL I P+ C K I ++ + M+FL G+H+ + VR+Q+LLMDP PS+ +
Sbjct: 1 WDELHSIAPINPCICGNAKSIIDQQNQDRAMEFLQGVHDRFSAVRSQILLMDPFPSIQRI 60
Query: 37 YSMALRVEKQR 5
Y++ + EKQ+
Sbjct: 61 YNIVRQEEKQQ 71
>gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygrometricum]
Length = 1012
Score = 604 bits (1557), Expect = 0.0
Identities = 311/684 (45%), Positives = 437/684 (63%), Gaps = 7/684 (1%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFA 2834
CL YA+ + KF+ RA KCVFLGY G +GY+L +LD + +L S DV+F E FPF
Sbjct: 340 CLCYASTLMSSRHKFSPRAIKCVFLGYPPGYRGYKLLNLDTNEILISCDVIFHEHEFPFQ 399
Query: 2833 SIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQP---ESHPLRRSSRISKPPAWLSDFIT 2663
+ S+ +S I P +S RS RI +PP L ++
Sbjct: 400 NT-YNSDSQPSYIFSDNLLPVHSQLNNSHTIPDPISSKSKQQSRSQRILQPPHHLQNYHC 458
Query: 2662 NSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLSNVEEPSSFSQAC 2483
+HSS+P S SH +F + S L + + N+S++ EP++FSQA
Sbjct: 459 Y-MHSSSPSTSTSHPL-----------CNFVNYSKLSPLHRNLVNNISSIVEPTTFSQAV 506
Query: 2482 KSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAK 2303
+W AM EL ALE N+TW + SLPPGK +GC+WVYK K DG+++RYKARLVAK
Sbjct: 507 AIPEWKQAMSDELKALELNHTWSIVSLPPGKSVVGCRWVYKAKFAADGSLQRYKARLVAK 566
Query: 2302 GFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPP 2123
G+ Q+ G+DYL++FSPVAK+VTVR ++ALA +GW L QL V+NAFLHG LDE++YM P
Sbjct: 567 GYTQQEGLDYLETFSPVAKMVTVRTLLALAAARGWSLIQLHVHNAFLHGELDEEVYMSLP 626
Query: 2122 EGYSKA----KDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSX 1955
GYS VC L +SLYGLKQASRQW A+F L GF+QS D+ LF++
Sbjct: 627 PGYSSEGGPLPPQSVCKLHKSLYGLKQASRQWFAKFSSTLLSVGFSQSHADNSLFIKVRD 686
Query: 1954 XXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLN 1775
++I+ LK +L++ F +KDLG +YFLG+E+AR++ G +
Sbjct: 687 NVFLVLLVYVDDIVIATNNEEAASELKSFLNNKFKLKDLGKLKYFLGIEVARSSRGISIC 746
Query: 1774 QRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPD 1595
QR Y ++ L +AG++ C+ TP+ +K+ ++G+ L DP +RRLIGRLLYL +TRPD
Sbjct: 747 QRNYAMNFLTEAGLMGCRPRSTPMEANVKITQEDGEILPDPSSYRRLIGRLLYLTVTRPD 806
Query: 1594 VTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCV 1415
+ ++V +LSQ+V+ P H +AA+++LRY+KG+ GL+Y ++S L L+ + DADW +C+
Sbjct: 807 LAFAVNKLSQYVSKPRLPHMEAALNILRYVKGTIGQGLYYGSNSDLRLKFFSDADWGACL 866
Query: 1414 DTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLS 1235
DTR+S+TG+C+FLG ++SW+ KKQ TVSRSSAEAEYR++ + CEI W+ L DLG+
Sbjct: 867 DTRRSVTGYCVFLGESMISWRAKKQHTVSRSSAEAEYRSMAAATCEILWIRSLLTDLGVK 926
Query: 1234 IPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADF 1055
P TL+CD+QAAIHI NPVFHERTKH++IDCH++R + G + L HVSS QLAD
Sbjct: 927 CDGPATLFCDSQAAIHIASNPVFHERTKHIDIDCHVIREKVQQGIVKLMHVSSVQQLADL 986
Query: 1054 FTKSLGRAAFLLLCSKLGLFDLHN 983
FTK+L + F L SK+G+ ++H+
Sbjct: 987 FTKALLTSRFRSLLSKMGIHNIHD 1010
>gb|PNX93906.1| hypothetical protein L195_g017068 [Trifolium pratense]
Length = 1183
Score = 607 bits (1564), Expect = 0.0
Identities = 319/714 (44%), Positives = 437/714 (61%), Gaps = 35/714 (4%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPF- 2837
CL +A HP KF RA + +F+GY TGQKGY++YD + + SRDV F E FP
Sbjct: 478 CLCFATIVHP-THKFDPRARRGIFVGYPTGQKGYKIYDPETKNFFVSRDVRFCETDFPSI 536
Query: 2836 --------------------ASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPIS------- 2738
+ IP PS+ ++++PI+
Sbjct: 537 PTTSKPNSISYHPPHEALDDSPIPTPSHVPSTHDLNPPPQPPTATPSAASPINDSIPTTS 596
Query: 2737 ---QPESHPL---RRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTS 2576
+P + P+ RRS R PP W D+ H S P + S S P S + P S
Sbjct: 597 HTPEPPTSPIPQVRRSLRDKNPPIWHQDY-----HMS-PQVNTSSSV-PTSRSGTRYPLS 649
Query: 2575 FNHS-SILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLP 2399
S S + +T+ FLAN++ +EP S+ QA W AM EL AL+QNNTW L LP
Sbjct: 650 HYLSYSRISSTHCTFLANITANKEPQSYDQAVHDPQWQAAMNTELEALQQNNTWNLVPLP 709
Query: 2398 PGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIA 2219
PG + IGCKWVYK+K + DGT+ERYKARLVAKG+ Q G+DY ++FSP AK+ T+R ++
Sbjct: 710 PGHKPIGCKWVYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETFSPTAKVTTLRCLLT 769
Query: 2218 LATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQW 2039
+A + W + QLDV NAFLHG L E +YM PP G + + VC L +SLYGLKQASR W
Sbjct: 770 VAASRNWFIHQLDVQNAFLHGDLHELVYMEPPPGLRRQGENVVCRLNKSLYGLKQASRNW 829
Query: 2038 NAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDD 1859
+ F +Q+ G+ QS D+ LF + ++++G L E+ LK +L
Sbjct: 830 FSTFSKAIQKAGYQQSKADYSLFTKPQGTSFTAVLIYVDDILLTGNDLEEMKRLKEFLLR 889
Query: 1858 LFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRA 1679
F IKDLG +YFLG+E +R+ G ++QRKY LDIL D+G++ + P+ LKL
Sbjct: 890 HFRIKDLGDLKYFLGIEFSRSKKGIFMSQRKYALDILQDSGLIGARPDKFPMEQNLKLTP 949
Query: 1678 KEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKG 1499
+G L DP ++RRL+GRL+YL +TRPD+ YSVQ LSQF++ P HWDAA+ +LRY+KG
Sbjct: 950 TDGVVLTDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPHWDAALRVLRYIKG 1009
Query: 1498 SPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSS 1319
+P G+ +S + L L+A+CD+DW C TR+S+TGFCIFLG+ +SWK+KKQ TVSRSS
Sbjct: 1010 TPGQGILFSTSNDLSLKAFCDSDWGGCHATRRSVTGFCIFLGNSPISWKSKKQVTVSRSS 1069
Query: 1318 AEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEI 1139
AE+EYRA+ + E+ WL ++ DL ++ P L+CDNQAA+HI NPVFHERTKH+EI
Sbjct: 1070 AESEYRAMANTCLELTWLRFILQDLKVTQAAPTPLFCDNQAALHIAANPVFHERTKHIEI 1129
Query: 1138 DCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT 977
DCH+VR ++G + +V +R QLAD FTK+LG+ F+ L +KLGL D+H+PT
Sbjct: 1130 DCHIVREKLQAGMISPSYVPTRFQLADVFTKALGKDQFVTLRNKLGLHDIHSPT 1183
Score = 187 bits (476), Expect = 8e-45
Identities = 92/210 (43%), Positives = 136/210 (64%), Gaps = 2/210 (0%)
Frame = -3
Query: 628 DPLKLYSSDHPGLSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSP--K 455
+P ++ SDHPG LV ++L G NY SW RSM+ AL AK K+GFI+G ++ P E+ +
Sbjct: 5 NPYYIHPSDHPGHLLVPTKLNGTNYPSWSRSMVHALTAKNKVGFIDGSIKEPSEEKQPAE 64
Query: 454 YDQWRKVDCMVISWILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIA 275
Y W + + M++SW+ +S+ +DL I+ +A +W D +F N P IYQ+++ +A
Sbjct: 65 YALWNRCNSMILSWLTHSVEQDLAKGVIHAKTAYQVWKDFKDQFSQKNIPAIYQIQKSLA 124
Query: 274 NMNQGNMSVVEYFTKLKRLWDELACIMPLPACESDTRKLIDERDMNRKLMQFLMGLHESY 95
+++QG MSV YFTK+K LWDEL LP C K DE+ +LMQFLMGL++SY
Sbjct: 125 SLSQGTMSVSTYFTKIKGLWDELESYRTLPTCSQ--MKAHDEQREEDRLMQFLMGLNDSY 182
Query: 94 DQVRNQLLLMDPLPSVDKAYSMALRVEKQR 5
VR+ +L+M PLP+V +AYS+ ++ E QR
Sbjct: 183 STVRSNILMMSPLPNVRQAYSLVIQEETQR 212
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 611 bits (1575), Expect = 0.0
Identities = 331/714 (46%), Positives = 440/714 (61%), Gaps = 32/714 (4%)
Frame = -3
Query: 3013 CLSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPF- 2837
CL Y + + ++ K RA+ CVFLG+ KGY YDL ++ SR+V F+E+ FP
Sbjct: 671 CLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLL 730
Query: 2836 ------ASIPVPS------------------NXXXXXXXXXXXXXXXXXXTSSAPIS--- 2738
++IPV S + S AP S
Sbjct: 731 QSTSSTSNIPVVSPISFGIHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTA 790
Query: 2737 ---QPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAP-TSFN 2570
P S PLRRS+R+ PP++L D+ HS T ++ H L P +
Sbjct: 791 DSLPPNSSPLRRSTRLRNPPSYLQDY----HHSLTSTSTNLHPG-------MLYPIEKYI 839
Query: 2569 HSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGK 2390
S L + AF++++S V EP S+++A K W+ AM EL AL+ N TW LT LPP K
Sbjct: 840 SYSRLSNDFQAFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHK 899
Query: 2389 RAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALAT 2210
+A+GC+W+YK+K DG++ERYKARLVAKG+ Q G+DYL +FSPVAKL TVRL++ALA
Sbjct: 900 QAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAA 959
Query: 2209 IKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAE 2030
+ W L QLDVNNAFLHG L+E++YM P G +VC LQ+SLYGLKQASRQW A+
Sbjct: 960 VFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAK 1019
Query: 2029 FCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFT 1850
L G+ QS DH LF++ S ++++G LSEI + LD F
Sbjct: 1020 LSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFK 1079
Query: 1849 IKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEG 1670
IKDLG +YFLG+E+ARN G L+QRKYVLDIL D GM+ + TP+ +L A G
Sbjct: 1080 IKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSG 1139
Query: 1669 DPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPS 1490
PL DP +RRL+GRL+YL TRPD++Y V LSQF+++P T+H A +LRYLK +P
Sbjct: 1140 TPLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPG 1199
Query: 1489 VGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEA 1310
GLF+ +SSL L+A+ D+DWA C+DTR+S+TGF ++LG L+SW++KKQ TVSRSS+EA
Sbjct: 1200 SGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEA 1259
Query: 1309 EYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCH 1130
EYRAL + E+QWL+YL DL + + P L+CDNQ+A+HI N VFHERTKH++IDCH
Sbjct: 1260 EYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCH 1319
Query: 1129 LVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHNPT*GG 968
LVR +SG L L V+S QLAD FTKSL + F L SKLG+ +L++ GG
Sbjct: 1320 LVREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLNLYSQLEGG 1373
Score = 147 bits (371), Expect = 4e-32
Identities = 72/201 (35%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
Frame = -3
Query: 592 LSLVSSQLTGNNYLSWRRSMLIALGAKTKLGFINGKMEIPKEDSPKYDQWRKVDCMVISW 413
++LVS L NY SW RSML AL AK K+ F++G P Y W++ + MV+SW
Sbjct: 1 MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60
Query: 412 ILNSISKDLVDAFIYCDSAKDLWDDIAKRFGDCNGPLIYQLERDIANMNQGNMSVVEYFT 233
++ S+S + + ++ DSA+++W D+ R+ + I L+ + +++ QG++SV +YFT
Sbjct: 61 LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120
Query: 232 KLKRLWDELACIMPLPACESDTR------KLIDERDMNRKLMQFLMGLHESYDQVRNQLL 71
+L+ +WDEL P P C + ++ +R + + MQFL GL++ Y VR+ +L
Sbjct: 121 QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVL 180
Query: 70 LMDPLPSVDKAYSMALRVEKQ 8
LMDPLP ++K +S + E+Q
Sbjct: 181 LMDPLPPINKIFSYVAQQERQ 201
>gb|PNX93131.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 982
Score = 597 bits (1540), Expect = 0.0
Identities = 318/704 (45%), Positives = 429/704 (60%), Gaps = 29/704 (4%)
Frame = -3
Query: 3010 LSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFPFAS 2831
L+YA+ +K+K + R KCVFLG G KG L+DLD+ ++ SR+V F+ P+ +
Sbjct: 264 LAYASTLDVNKTKLSPRGRKCVFLGQKQGVKGSILFDLDSKNIFLSRNVTHFDHILPYTT 323
Query: 2830 ----------IPVPSNXXXXXXXXXXXXXXXXXXTSSAP----ISQPE---SHPL----- 2717
+ S P IS P S PL
Sbjct: 324 NTSKLHWHYHSTINCEPFLDIDQSHTSTNPSDTTPSPTPPTNIISDPNPSTSSPLPSSPF 383
Query: 2716 ------RRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHS-SI 2558
R RI P++LSDF+ S S + S ++ P S HS S
Sbjct: 384 PIQPANTRPDRIKHRPSYLSDFV----------CSASDDSAKSSSTGTIYPISSFHSLSQ 433
Query: 2557 LGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIG 2378
L +++ F ++L+ EP ++++ACKS W+ AM EL AL + TW + LPP + IG
Sbjct: 434 LSPSHSVFTSSLTQHTEPRTYTEACKSQHWIQAMTSELEALARTGTWKIVDLPPNVKPIG 493
Query: 2377 CKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGW 2198
KWVYK+K + DGT+ERYKARLVAKG++Q G+D+ D+FSPVAKL TVR+++A+A+IKGW
Sbjct: 494 SKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKGW 553
Query: 2197 PLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLK 2018
L QLDVNNAFLHG L E++YM P+G +K +VC L +SLYGLKQASR+W +
Sbjct: 554 FLHQLDVNNAFLHGDLQENVYMSIPDGVQCSKPNQVCKLLKSLYGLKQASRKWYEKLTSL 613
Query: 2017 LQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDL 1838
L + G+TQS DH LF +I++GT L EI+ +K LD F IKDL
Sbjct: 614 LVKEGYTQSSSDHSLFTISQQDNFTALLIYVDDIILAGTSLQEINRIKNILDTHFKIKDL 673
Query: 1837 GYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLV 1658
G +YFLG+E+A + +G ++QRKY LD+LHD+G+L K A TPL P +KL +G P
Sbjct: 674 GVVKYFLGLEVAHSKEGISISQRKYCLDLLHDSGLLGSKPASTPLDPSVKLHHDDGKPFE 733
Query: 1657 DPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLF 1478
D +RRL+G+LLYL TRPD+ ++ QQLSQF++ P +H+ AA ++RYLK +P +GL
Sbjct: 734 DISMYRRLVGKLLYLTNTRPDIAFATQQLSQFLHKPTMTHYKAACRVIRYLKHNPGMGLI 793
Query: 1477 YSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRA 1298
+ ++ + L Y DADWA C+DTR+S TG+C F+GS L+SWK KKQTT+S+SS+EAEYRA
Sbjct: 794 FKRNADIQLIGYSDADWAGCLDTRRSTTGYCFFVGSSLISWKAKKQTTISKSSSEAEYRA 853
Query: 1297 LGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRN 1118
L S CE+ WL YL DL + L+CDNQ+A+HI NPVFHERTKH+EIDCHLVR
Sbjct: 854 LSSATCELVWLLYLLKDLHIECSKQPVLFCDNQSALHIASNPVFHERTKHIEIDCHLVRE 913
Query: 1117 LYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLH 986
+ G L L VS++ QLADF TKSL F KLGL D++
Sbjct: 914 KVQEGLLRLIPVSTQEQLADFLTKSLPAPKFHDFLCKLGLLDIY 957
>gb|PNX92076.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 720
Score = 588 bits (1516), Expect = 0.0
Identities = 322/697 (46%), Positives = 423/697 (60%), Gaps = 17/697 (2%)
Frame = -3
Query: 3010 LSYAANTHPHKSKFAARAYKCVFLGYITGQKGYRLYDLDNHSLLTSRDVVFFEDSFP--- 2840
L YA H++K RA K +FLGY +G KGY LYDL + + SR V F E+ P
Sbjct: 10 LCYATTLTSHRTKLDPRARKSLFLGYRSGYKGYVLYDLSSREIFISRHVTFHENVLPYPN 69
Query: 2839 ----------FASIPVPSNXXXXXXXXXXXXXXXXXXTSSAPISQPESHP---LRRSSRI 2699
+ S S+ +S S S P R S+R
Sbjct: 70 STSISTSNWDYISSHTSSDTSIHTSNEIITPPSINLPANSTASSPSTSAPPTLTRCSTRP 129
Query: 2698 SKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAPTSFNHSSILGATYTAFLANLS 2519
P +L D++ N++ HS+ SG S ++F L + + +L+
Sbjct: 130 KHIPPYLKDYVCNAL---------DHSSMKSSG-ISYPMSNFISYQNLSNPHCFYALSLT 179
Query: 2518 NVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDG 2339
EP S+++A K W AMQ EL ALE TW+L LP + IGC+WVYKVK DG
Sbjct: 180 THTEPKSYAEAIKFDCWKQAMQVELQALENTGTWILVDLPHHVKPIGCRWVYKVKHHADG 239
Query: 2338 TVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLH 2159
+VERYKARLVAKGF+Q G+DY D+FSPVAKL TVR+VIALA++ W L QLDVNNAFLH
Sbjct: 240 SVERYKARLVAKGFNQIEGLDYFDTFSPVAKLTTVRIVIALASVHNWFLHQLDVNNAFLH 299
Query: 2158 GYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDH 1979
G L ED+YMLPP G + +VC L +SLYGLKQASRQW A+ L G+ Q+ DH
Sbjct: 300 GDLQEDVYMLPPPGVTN-DPNKVCKLVKSLYGLKQASRQWYAKLTSLLLSHGYKQAHSDH 358
Query: 1978 CLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIAR 1799
LF + VI++G ++E +K L + F IKDLG +YFLG+E+A
Sbjct: 359 SLFTKHDASHFTLLLVYVDDVILAGNHMAEFSYVKNLLHNAFKIKDLGQLKYFLGLEVAH 418
Query: 1798 NTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLL 1619
+ G L QRKY LD+L D+G+L K TP LKL A + P D +RRL+GRLL
Sbjct: 419 SAKGISLCQRKYCLDLLSDSGLLGAKPVSTPSDASLKLHADDSAPFEDISAYRRLVGRLL 478
Query: 1618 YLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYC 1439
YLN TRPD+T+ QQLSQF++ P +H+ AAM +LRYLK P GLF+ +S+L + +
Sbjct: 479 YLNTTRPDITFITQQLSQFLSKPTHTHYSAAMRVLRYLKNCPGRGLFFPRNSTLQILGFS 538
Query: 1438 DADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSY 1259
DADWA C D+R+S++G C FLG L+SW+TKKQ TV+RSS+EAEYRAL + CE+QWL+Y
Sbjct: 539 DADWAGCKDSRRSISGQCFFLGQSLISWRTKKQLTVARSSSEAEYRALAAATCELQWLAY 598
Query: 1258 LCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVS 1079
L DL ++ P L+CDNQ+A+HI NPVFHERTKH++IDCH+VR ++G + L VS
Sbjct: 599 LLQDLHITCPKLPVLYCDNQSALHIAANPVFHERTKHIDIDCHIVREKLQAGLMKLLPVS 658
Query: 1078 SRLQLADFFTKSLGRAAFLLLCSKLGLFDLHN-PT*G 971
S+ Q+ADFFTKSL F +L +KLG+FD++ PT G
Sbjct: 659 SKDQIADFFTKSLLPQPFGVLLAKLGMFDIYQAPTCG 695
>gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 666
Score = 585 bits (1509), Expect = 0.0
Identities = 308/669 (46%), Positives = 412/669 (61%), Gaps = 20/669 (2%)
Frame = -3
Query: 2923 QKGYRLYDLDNHSLLTSRDVVFFEDSFPFAS------------IPVPSNXXXXXXXXXXX 2780
QKGYRLYDL N L SRDVVF E+ FPF +P+P N
Sbjct: 3 QKGYRLYDLSNQEYLVSRDVVFQENIFPFQQSRTPPTPSQVLPLPIPDNHSFNSLPSTPI 62
Query: 2779 XXXXXXXTSSAP-----ISQP--ESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSH 2621
S IS P E PL RS R +PP +L + + V PS
Sbjct: 63 ESPNETPIISNDSSLNEISLPSNEDQPLARSQRNRRPPPYLQYYECSKVRRQ-----PSQ 117
Query: 2620 SAGPDSGDFSLAPTS-FNHSSILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQREL 2444
S+ SG + P S F + L +TY+ F++N++++ EP S+S+A K +W A+ EL
Sbjct: 118 SSSTTSGSGTRYPISNFLSTHRLSSTYSTFVSNITSIAEPQSYSEAIKDPNWKAAIDAEL 177
Query: 2443 TALEQNNTWVLTSLPPGKRAIGCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDS 2264
ALE N TW + LPP K +GCKWV+KVK + G++ERYKARLVAKG+ Q+ G+D+ ++
Sbjct: 178 HALEANKTWSIVDLPPHKSPVGCKWVFKVKYKSYGSIERYKARLVAKGYTQQEGIDFHET 237
Query: 2263 FSPVAKLVTVRLVIALATIKGWPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCH 2084
F+PVAK+ TVR ++A+A+ K WPL+QLDV NA LHG LDE++YM P G + + VC
Sbjct: 238 FAPVAKMTTVRCLLAIASTKNWPLYQLDVQNALLHGDLDEEVYMSLPPGVTSKGENSVCK 297
Query: 2083 LQRSLYGLKQASRQWNAEFCLKLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISG 1904
L +SLYGL+QAS QW A+F L +GF QS D+ LF++ S ++I+G
Sbjct: 298 LHKSLYGLRQASLQWFAKFSTALLTYGFVQSRSDYSLFIKSSKTDFVAILVYVDDIVITG 357
Query: 1903 TVLSEIDALKRYLDDLFTIKDLGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHC 1724
ID++K L F+IKDLG +YFLG+E+AR+ G L+QRKY L++L + G+
Sbjct: 358 NNSKLIDSVKNALQRQFSIKDLGSLKYFLGLEVARSKQGIYLSQRKYTLELLSETGLAGA 417
Query: 1723 KAAITPLPPGLKLRAKEGDPLVDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYT 1544
+ P+ KL A EG+ L DP +RRLIG+L+YL +TRPD+ YSV LSQF+N P
Sbjct: 418 RPLYVPMEQNTKLSAHEGELLKDPSPYRRLIGKLIYLTITRPDIMYSVHVLSQFMNQPRH 477
Query: 1543 SHWDAAMHLLRYLKGSPSVGLFYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCL 1364
H+DAA+ L+RYLK SP G+ S+ S L A+ D+DWASC DTR+SLTGFCI LGS
Sbjct: 478 PHFDAALRLVRYLKSSPGQGILLSSLSDFKLRAFSDSDWASCPDTRRSLTGFCILLGSSP 537
Query: 1363 VSWKTKKQTTVSRSSAEAEYRALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHI 1184
+SWKTKKQ TVS SSAEAEYRA+ EI WL L D G+S TP +L CDN+AA+HI
Sbjct: 538 ISWKTKKQQTVSCSSAEAEYRAMAFTCREIVWLQSLLHDFGISQCTPASLHCDNKAALHI 597
Query: 1183 VQNPVFHERTKHLEIDCHLVRNLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKL 1004
NPVFHER+KH+E+DCH +R+ + + ++S+ Q AD FTK LG+ L KL
Sbjct: 598 AANPVFHERSKHIEVDCHFIRDKLQQKIIETSYISTTQQPADLFTKPLGKDQLHHLLRKL 657
Query: 1003 GLFDLHNPT 977
+ D+H+PT
Sbjct: 658 AVHDIHSPT 666
>gb|PNY03100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 629
Score = 582 bits (1500), Expect = 0.0
Identities = 290/586 (49%), Positives = 390/586 (66%), Gaps = 1/586 (0%)
Frame = -3
Query: 2737 QPESHPLRRSSRISKPPAWLSDFITNSVHSSTPMASPSHSAGPDSGDFSLAP-TSFNHSS 2561
QPE PLRRS+R S PP +L++ N + T P SA S P +S+
Sbjct: 36 QPE--PLRRSTRNSHPPPFLTE---NYYCNLTSATLPDSSAATLSSSSCKYPISSYVSYQ 90
Query: 2560 ILGATYTAFLANLSNVEEPSSFSQACKSADWVDAMQRELTALEQNNTWVLTSLPPGKRAI 2381
+ + + FL NLS + EP+ + +A +W A+ EL+ALE+NNTW L LP K AI
Sbjct: 91 NISSAHNHFLFNLSTIPEPTCYEKAVCDENWKTAINAELSALEKNNTWKLVPLPLHKHAI 150
Query: 2380 GCKWVYKVKMRPDGTVERYKARLVAKGFHQEHGVDYLDSFSPVAKLVTVRLVIALATIKG 2201
GCKWV+K+K+ DGT+ERYKARLVAKG+ Q G+DY+D+FSPV K+ T+R+++A+A +
Sbjct: 151 GCKWVFKLKLHADGTIERYKARLVAKGYTQTEGIDYMDTFSPVVKMTTIRVLLAVAAAQN 210
Query: 2200 WPLFQLDVNNAFLHGYLDEDIYMLPPEGYSKAKDGEVCHLQRSLYGLKQASRQWNAEFCL 2021
WPL+QLDVN AFLHG L+E++YM PP G S VC LQRSLYGLKQASRQWN +
Sbjct: 211 WPLYQLDVNTAFLHGDLNEEVYMQPPPGLSLPHSNLVCKLQRSLYGLKQASRQWNTKLTE 270
Query: 2020 KLQQFGFTQSGHDHCLFVRQSXXXXXXXXXXXXXVIISGTVLSEIDALKRYLDDLFTIKD 1841
L G+ QS D+ LF +Q+ +++ GT +EI +K LD+ F+IKD
Sbjct: 271 TLTASGYVQSKSDYSLFTKQASSGLTIILVYVDDLVLGGTDSNEIQNIKALLDEKFSIKD 330
Query: 1840 LGYARYFLGMEIARNTDGSVLNQRKYVLDILHDAGMLHCKAAITPLPPGLKLRAKEGDPL 1661
LGY +YFLG E+AR G L QRKY LD++ DAG+L K TP+ P L+L G +
Sbjct: 331 LGYLKYFLGFEVARTQAGISLCQRKYALDLIQDAGLLGAKPCSTPMQPQLQLHKSSGQAI 390
Query: 1660 VDPERFRRLIGRLLYLNLTRPDVTYSVQQLSQFVNSPYTSHWDAAMHLLRYLKGSPSVGL 1481
+P +RRLIGRLLYL +RP++ Y+V +LSQF++ P H A +H+LRY+K SP GL
Sbjct: 391 SEPTSYRRLIGRLLYLTHSRPEIAYAVSKLSQFLDKPTNEHMLAGLHVLRYVKNSPGQGL 450
Query: 1480 FYSAHSSLCLEAYCDADWASCVDTRKSLTGFCIFLGSCLVSWKTKKQTTVSRSSAEAEYR 1301
F+ + S L L+ + D+DW +C DTR+S TGFC FLG+ L+SWK+KKQ VSRSS+EAEYR
Sbjct: 451 FFDSKSPLTLKGFSDSDWGACPDTRRSTTGFCFFLGNSLISWKSKKQNVVSRSSSEAEYR 510
Query: 1300 ALGSGVCEIQWLSYLCADLGLSIPTPVTLWCDNQAAIHIVQNPVFHERTKHLEIDCHLVR 1121
AL CE QWL +L DL +S PTP+ ++CDN++A+HI NPVFHERTKH+E+DCH+VR
Sbjct: 511 ALAQTTCEGQWLKFLLQDLHISHPTPIVIYCDNKSALHIAANPVFHERTKHIEMDCHVVR 570
Query: 1120 NLYKSGFLHLGHVSSRLQLADFFTKSLGRAAFLLLCSKLGLFDLHN 983
+SG +HL V ++ Q+AD TKSL F L SKLG+ D+++
Sbjct: 571 EKVQSGLIHLLSVHTKEQVADILTKSLHPGPFHTLQSKLGMIDIYS 616