BLASTX nr result
ID: Rehmannia30_contig00015532
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00015532
(1258 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo... 614 0.0
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo... 616 0.0
gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo... 502 e-172
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo... 468 e-157
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc... 474 e-154
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc... 477 e-154
gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group] 471 e-153
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group] 474 e-153
gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygro... 466 e-152
gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Jap... 472 e-152
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 473 e-152
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc... 467 e-152
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 472 e-152
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 472 e-152
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap... 472 e-151
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo... 472 e-151
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc... 472 e-151
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-... 472 e-151
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc... 472 e-151
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc... 472 e-151
>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 714
Score = 614 bits (1583), Expect = 0.0
Identities = 304/410 (74%), Positives = 349/410 (85%), Gaps = 2/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
Q GTRTVSMGNGS+ARV+G G+V+L LSSG L LD V H+ +IRKNLISA+LLV+ G+
Sbjct: 237 QECGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVSEIRKNLISAALLVQQGF 296
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXS-IANVECCDTWHGR 902
KVVFESN+VVISRHG F+GKG++ DGLF+LS+M S I+NVECCD WHGR
Sbjct: 297 KVVFESNRVVISRHGSFVGKGYICDGLFKLSIMSSFINKNSSISSSSISNVECCDIWHGR 356
Query: 901 LGHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHK-SVDKETMLLGLIHSDI 725
LGHVN +IKRMM LDLIPK+ +K+KCE+CVQAKQPRK + SV KET +L LIHSDI
Sbjct: 357 LGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDI 416
Query: 724 CDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILR 545
CDSN V+TRGG +YFITFIDDFSKYCYVYLI KS LF+KFK YKAEVENQLE+ IKILR
Sbjct: 417 CDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILR 476
Query: 544 SDRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKN 365
SDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N
Sbjct: 477 SDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDN 536
Query: 364 CWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGP 185
WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVW CLAKVNIPI KKRKIGP
Sbjct: 537 LWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWWCLAKVNIPINKKRKIGP 596
Query: 184 KTVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMK 35
KTVDCVF+GYS +S TYRFLV NSEV EISNNII+ESRD VFFENIFP+K
Sbjct: 597 KTVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMESRDVVFFENIFPLK 646
>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 880
Score = 616 bits (1588), Expect = 0.0
Identities = 304/410 (74%), Positives = 350/410 (85%), Gaps = 2/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
Q GTRTVSMGNGS+ARV+G G+V+L LSSG L LD V H+ +IRKNLISA+LLV+ G+
Sbjct: 239 QECGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVSEIRKNLISAALLVQQGF 298
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXS-IANVECCDTWHGR 902
KVVFESN+VVISRHG F+GKG++ DGLF+LS+M S I+NVECCD WHGR
Sbjct: 299 KVVFESNRVVISRHGSFVGKGYICDGLFKLSIMSSFINKNSSISSSSISNVECCDIWHGR 358
Query: 901 LGHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHK-SVDKETMLLGLIHSDI 725
LGHVN +IKRMM LDLIPK+ +K+KCE+CVQAKQPRK + SV KET +L LIHSDI
Sbjct: 359 LGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDI 418
Query: 724 CDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILR 545
CDSN V+TRGG +YFITFIDDFSKYCYVYLI KS LF+KFK YKAEVENQLE+ IKILR
Sbjct: 419 CDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILR 478
Query: 544 SDRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKN 365
SDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N
Sbjct: 479 SDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDN 538
Query: 364 CWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGP 185
WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAKVNIPI KKRKIGP
Sbjct: 539 LWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRKIGP 598
Query: 184 KTVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMK 35
KTVDCVF+GYS +S TYRFLV SEV EISNNII+ESRDA+FFENIFP+K
Sbjct: 599 KTVDCVFLGYSLHSTTYRFLVIKSEVSEISNNIIMESRDAIFFENIFPLK 648
>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 565
Score = 502 bits (1292), Expect = e-172
Identities = 241/303 (79%), Positives = 270/303 (89%), Gaps = 1/303 (0%)
Frame = -1
Query: 940 IANVECCDTWHGRLGHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHK-SVD 764
I+NVECCD WHGRLGHVN +IKRMM LDLIPK+ +K+KCE+CVQAKQPRK + SV
Sbjct: 16 ISNVECCDIWHGRLGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQ 75
Query: 763 KETMLLGLIHSDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAE 584
KET +L LIHSDICDSN V+TRGG +YFITFIDDFSKYCYVYLI KS LF+KFK YKAE
Sbjct: 76 KETCVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAE 135
Query: 583 VENQLEKKIKILRSDRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDM 404
VENQLEK IKILRSDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM
Sbjct: 136 VENQLEKSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDM 195
Query: 403 VNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAK 224
+NAML+SSGLP N WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAK
Sbjct: 196 INAMLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAK 255
Query: 223 VNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIF 44
VNIPI KKRKIGPKTVDCVF+GYS +S TYRFLV NSEV EISNNII+ESRDAVFFENIF
Sbjct: 256 VNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMESRDAVFFENIF 315
Query: 43 PMK 35
P+K
Sbjct: 316 PLK 318
>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
Length = 679
Score = 468 bits (1204), Expect = e-157
Identities = 229/410 (55%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 61 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 120
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 121 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 178
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 179 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 238
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 239 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 298
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
+RGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 299 NRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 358
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N +KTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 359 WGEALLTSNHVLNRVPNRNKNKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 418
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 419 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 468
>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 474 bits (1219), Expect = e-154
Identities = 232/410 (56%), Positives = 299/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 192 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 251
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 252 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 309
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETM-LLGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + LL L+HSD+C
Sbjct: 310 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLALLELLHSDLC 369
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 370 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 429
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 430 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 489
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 490 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 549
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 550 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 599
>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 477 bits (1227), Expect = e-154
Identities = 232/410 (56%), Positives = 301/410 (73%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 282 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 341
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 342 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 399
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 400 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 459
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+TFIDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 460 EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 519
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 520 DRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 579
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 580 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 639
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA+FFE+ FPMK+
Sbjct: 640 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPMKD 689
>gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1059
Score = 471 bits (1211), Expect = e-153
Identities = 230/404 (56%), Positives = 295/404 (73%), Gaps = 1/404 (0%)
Frame = -1
Query: 1240 TVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFES 1061
TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+K+VFES
Sbjct: 436 TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 495
Query: 1060 NKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRLGHVNSG 881
NKVV+S+HG FIGKGF GLFR S+ S+ + + WH RL H+N G
Sbjct: 496 NKVVVSKHGYFIGKGFECGGLFRFSLSDFCNKSVNHICGSVDDE--VNVWHSRLCHINFG 553
Query: 880 TIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVL 704
+ R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C+ N VL
Sbjct: 554 LMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVL 613
Query: 703 TRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEY 524
T+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRSDRGGE+
Sbjct: 614 TKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEF 673
Query: 523 ASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALY 344
S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK WGEAL
Sbjct: 674 FSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALL 733
Query: 343 SACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVF 164
++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF
Sbjct: 734 TSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVF 793
Query: 163 VGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 794 LGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 837
>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 474 bits (1221), Expect = e-153
Identities = 232/410 (56%), Positives = 300/410 (73%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSQASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+TFIDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W ++KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAYHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygrometricum]
Length = 979
Score = 466 bits (1198), Expect = e-152
Identities = 223/405 (55%), Positives = 297/405 (73%), Gaps = 1/405 (0%)
Frame = -1
Query: 1243 RTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFE 1064
R + MGN + + V G G+V L ++S K L+L V H+P+IRKNL+S S LV+ G+++VFE
Sbjct: 334 RKLFMGNSASSDVAGIGKVVLKMTSRKELALIDVLHVPEIRKNLVSGSALVKAGFRLVFE 393
Query: 1063 SNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIAN-VECCDTWHGRLGHVN 887
SNK ++S++G+FIGKG++ D LF+++VMP + VEC + WHGRLGHVN
Sbjct: 394 SNKFILSKNGVFIGKGYLEDNLFKMNVMPVLREFDGNKIKASTYIVECSNLWHGRLGHVN 453
Query: 886 SGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETMLLGLIHSDICDSNHV 707
T+KR++ L+L+P IN KCE+CV+AK + P SV++ T L LIHSDICD V
Sbjct: 454 YNTLKRLVKLNLLPTMDINKTHKCEVCVEAKMTKLPFHSVERSTTPLELIHSDICDLKFV 513
Query: 706 LTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGE 527
TRGG +YF+TFIDD ++YCYVYL+ K + F+ YKAEVENQL+++IK +RSDRGGE
Sbjct: 514 QTRGGKKYFVTFIDDCTRYCYVYLLRGKDEALEAFQNYKAEVENQLDQRIKNIRSDRGGE 573
Query: 526 YASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEAL 347
Y + D+C GI+H+ T YSPQSNGVAERKNRTL +M+NA+L++SGLP+N WGEA+
Sbjct: 574 YGAP-FDDYCVKSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLINSGLPQNLWGEAI 632
Query: 346 YSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCV 167
SA ILN++P K DKTPYELWK KP+ K+LKVWGCLAKV +P K+ KIGPKT D +
Sbjct: 633 LSANHILNKIPQKKKDKTPYELWKGHKPSYKYLKVWGCLAKVEVPKPKQVKIGPKTFDGI 692
Query: 166 FVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
F+GY++NS YRFLV S++P I + IESR+A+FFEN+FP KE
Sbjct: 693 FIGYANNSSAYRFLVHKSDIPSIHEDTTIESRNAIFFENVFPRKE 737
>gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
gb|AAW56890.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1274
Score = 472 bits (1215), Expect = e-152
Identities = 231/410 (56%), Positives = 299/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+TFIDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
D GGE+ S+E FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DHGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFLV SEV ++ I+ESRDA+FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLVVKSEVSDMHVGTIMESRDAIFFESFFPMKD 728
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 473 bits (1216), Expect = e-152
Identities = 232/410 (56%), Positives = 299/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+TFIDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L++WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEV ++ IIESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKD 728
>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1095
Score = 467 bits (1202), Expect = e-152
Identities = 227/404 (56%), Positives = 294/404 (72%), Gaps = 1/404 (0%)
Frame = -1
Query: 1240 TVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFES 1061
T+ MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+K+VFES
Sbjct: 120 TILMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 179
Query: 1060 NKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRLGHVNSG 881
NKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL H+N G
Sbjct: 180 NKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFG 237
Query: 880 TIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVL 704
+ R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C+ N VL
Sbjct: 238 LMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVL 297
Query: 703 TRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEY 524
T+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRSDRGGE+
Sbjct: 298 TKGGKRYFMTLIDDATRFCYVYLLKTKDETLDYFKIYKAEVENQLDRKIKRLRSDRGGEF 357
Query: 523 ASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALY 344
S+E FC+ HGI+HE P YSP+SNG+AERKNRTL D+VNAML ++GLPK WGEAL
Sbjct: 358 FSNEFDLFCEEHGIIHERKPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALL 417
Query: 343 SACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVF 164
++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF
Sbjct: 418 TSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVF 477
Query: 163 VGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 478 LGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 521
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 472 bits (1214), Expect = e-152
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 472 bits (1214), Expect = e-152
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1320
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728
>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 472 bits (1214), Expect = e-151
Identities = 231/410 (56%), Positives = 298/410 (72%), Gaps = 1/410 (0%)
Frame = -1
Query: 1258 QVSGTRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGY 1079
QV+ TV MGNGS A V G G V L +SGK++ L V H+P I +NL+S S L R+G+
Sbjct: 321 QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGF 380
Query: 1078 KVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTWHGRL 899
K+VFESNKVV+S+HG FIGKG+ GLFR S+ S+ + + WH RL
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRL 438
Query: 898 GHVNSGTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDIC 722
H+N G + R+ + LIPK SI KC CVQ+KQPRKPHK+ ++ + L L+HSD+C
Sbjct: 439 CHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLC 498
Query: 721 DSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRS 542
+ N VLT+GG +YF+T IDD +++CYVYL+ K D FK YKAEVENQL++KIK LRS
Sbjct: 499 EMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRS 558
Query: 541 DRGGEYASDEMADFCK*HGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNC 362
DRGGE+ S+E FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK
Sbjct: 559 DRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW 618
Query: 361 WGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPK 182
WGEAL ++ +LNRVP +N DKTPYE+W +KP+L +L+ WGCLAKVN+PI KKRK+GPK
Sbjct: 619 WGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Query: 181 TVDCVFVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKE 32
TVDCVF+GY+ +S YRFL+ SEVP++ I+ESRDA FFE+ FPMK+
Sbjct: 679 TVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD 728