BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00039275
         (1731 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot...   870   0.0  
ref|YP_009104374.1| putative replicase [Cassava Ivorian bacillif...   786   0.0  
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]             459   e-147
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] >gi|8...   417   e-131
gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus]             394   e-123
gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus]             391   e-122
gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus]             390   e-121
ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus] >gi|...   389   e-121
gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus]             387   e-120
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] >gi|513...   383   e-118
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] >...   378   e-116
gb|ATU46942.1| 1a protein [Sambucus virus S]                          375   e-115
ref|NP_689392.1| 1a protein [Spring beauty latent virus] >gi|225...   374   e-115
ref|NP_659000.1| 1a protein [Broad bean mottle virus] >gi|401312...   371   e-114
ref|NP_041196.1| replicase [Brome mosaic virus] >gi|137251|sp|P0...   370   e-114
dbj|BAJ41520.1| 1a protein [Brome mosaic virus]                       368   e-113
gb|ADW09019.1| replication protein 1a [Brome mosaic virus]            368   e-113
emb|CAA41361.1| 1a protein [Brome mosaic virus]                       367   e-112
gb|AOH95427.1| 1a protein [Brome mosaic virus]                        367   e-112
gb|ABF83485.1| 1a [Brome mosaic virus]                                367   e-112

>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
 dbj|BAM34543.1| replication protein 1a [Amazon lily mild mottle virus]
          Length = 945

 Score =  870 bits (2248), Expect = 0.0
 Identities = 439/576 (76%), Positives = 474/576 (82%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            K+TAVSGDIPRTKIRHCIWFPRTRDYLHINVVD SKV+HRLAWRKVKVKLDTVREVEEIA
Sbjct: 284  KVTAVSGDIPRTKIRHCIWFPRTRDYLHINVVDKSKVAHRLAWRKVKVKLDTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ KPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDP DYHYVAFSLLLNCKRK
Sbjct: 344  FRCFKENKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPLDYHYVAFSLLLNCKRK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVF 1191
            FEELQ VYKKIVWQGWWNHCT WWSEST+FQDFLA CFPSLLDYYHSKVFVEKI EC VF
Sbjct: 404  FEELQAVYKKIVWQGWWNHCTGWWSESTKFQDFLAVCFPSLLDYYHSKVFVEKISECVVF 463

Query: 1190 ESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPDVEGGKPVHSQ 1011
            ESEL AL GSKSW DDAY++           LSK KE   EK+ + E+      K   + 
Sbjct: 464  ESELAALEGSKSWSDDAYNILNNNLLLCALALSKCKEHKPEKEKEKEEVLAVPSKATPTL 523

Query: 1010 PNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGS 831
                    +   ++  D   RPGRME+RAQAKDEFVAYTRK++SNAAANL+RLWKLCGGS
Sbjct: 524  VEVKEEEKLDTPIIAVD---RPGRMEIRAQAKDEFVAYTRKINSNAAANLSRLWKLCGGS 580

Query: 830  GSDNFVSTNCLNVLKLGDSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIVDKT 651
            GSDNFVSTNCL+VLKLGDSLINFHKRSG+I++TNETY+VGFNGNGLGVK  DENYIVDKT
Sbjct: 581  GSDNFVSTNCLDVLKLGDSLINFHKRSGFIYKTNETYEVGFNGNGLGVKRDDENYIVDKT 640

Query: 650  CILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEI 471
            CILDNL +IAEGADKA  S+A+ +L+DGVAGCGKTTSICDQFNAE+DLIVTANRKS+ EI
Sbjct: 641  CILDNLEAIAEGADKASVSTASIILVDGVAGCGKTTSICDQFNAESDLIVTANRKSAVEI 700

Query: 470  RDKLFKDSPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXG 291
            R KLFKDSPD GK +VRTADSVLMHDCI A RILFDE GLLHF                G
Sbjct: 701  RHKLFKDSPDAGKIYVRTADSVLMHDCIKAERILFDEVGLLHFGQLVAVARKVEAKVVLG 760

Query: 290  FGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKARHSKYHG 111
            FGDSEQI+FINRD+TF + YSQL VDEST    TYRCPKDVV LVK  +K K   SKY  
Sbjct: 761  FGDSEQIAFINRDRTFNLNYSQLVVDESTTATTTYRCPKDVVELVKR-MKKKNHKSKYQA 819

Query: 110  WESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            W +KS VVRSVSAPIDVVGLPGVKLE DWVYLTMTQ
Sbjct: 820  WTTKSKVVRSVSAPIDVVGLPGVKLESDWVYLTMTQ 855


>ref|YP_009104374.1| putative replicase [Cassava Ivorian bacilliform virus]
 gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
          Length = 943

 Score =  786 bits (2029), Expect = 0.0
 Identities = 404/580 (69%), Positives = 455/580 (78%), Gaps = 4/580 (0%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KITAVSGD+PR++IRHC+WFPRTRDYLHINVVD +  S+RLAWRKVKVK+DTVREVEEIA
Sbjct: 284  KITAVSGDVPRSRIRHCVWFPRTRDYLHINVVDTT--SNRLAWRKVKVKIDTVREVEEIA 341

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ KPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLD  DYHYVAFSLLLNCKRK
Sbjct: 342  FRCFKEAKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDVLDYHYVAFSLLLNCKRK 401

Query: 1370 FEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVF 1191
            FEELQCVYKKIVWQG W+HCT+WWSE  RFQ FL +CFPSLL+YY+SKVFVEKI ECQVF
Sbjct: 402  FEELQCVYKKIVWQGRWHHCTRWWSEGDRFQKFLESCFPSLLEYYNSKVFVEKIVECQVF 461

Query: 1190 ESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSK---TKEKLKEKDIQDEKPDVEGGKPV 1020
            ESELEA+SG  +W + A +            LSK   + E  K + + D +P+V     +
Sbjct: 462  ESELEAISGCTNWTETATNCLNNSLLLCALALSKAPLSPENPKPETVADPRPEVSSDDKI 521

Query: 1019 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 840
             S             V  KD     GRMELRAQAK EFVAYTR L+SNAA+NL RLW+LC
Sbjct: 522  ES-------------VETKDAVKVDGRMELRAQAKAEFVAYTRTLNSNAASNLKRLWQLC 568

Query: 839  GGSGSDNFVSTNCLNVLKLGDSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIV 660
            GG GSDNFVST CLNVLKLGDS INFHK SGWIF T+ +Y+VG+NG GLGVK   ENYIV
Sbjct: 569  GGDGSDNFVSTECLNVLKLGDSQINFHKSSGWIFPTSTSYEVGYNGRGLGVKGETENYIV 628

Query: 659  DKTCILDNLASIAEGAD-KAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 483
            DKTC LDNLA+IA+GA+ K +    +  L+    GCGKTTSI +QF+A +DLIVTANRKS
Sbjct: 629  DKTCTLDNLAAIADGAEKKPVFQKRSSCLLTVSLGCGKTTSIINQFDANSDLIVTANRKS 688

Query: 482  SEEIRDKLFKDSPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXX 303
            + EIR+KLF+ SPDLGK+FVRTADSVLMHDCITA R+LFDE GLLHF             
Sbjct: 689  AVEIRNKLFEFSPDLGKKFVRTADSVLMHDCITARRLLFDEVGLLHFGQLVAVAGKVQAD 748

Query: 302  XXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKARHS 123
               GFGDSEQI+FINRDKTF +KYS+LSVDEST    TYRCP+DVV LVK VIK K  HS
Sbjct: 749  VVLGFGDSEQIAFINRDKTFDLKYSRLSVDESTTALTTYRCPRDVVELVK-VIKEKTPHS 807

Query: 122  KYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            KYH WE+KS+V RSVSAPIDV+GLPGVKLEPDWVYLTMTQ
Sbjct: 808  KYHTWETKSSVSRSVSAPIDVIGLPGVKLEPDWVYLTMTQ 847


>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
          Length = 962

 Score =  459 bits (1181), Expect = e-147
 Identities = 271/601 (45%), Positives = 356/601 (59%), Gaps = 25/601 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI AVSG IPRT++RHC+WFP+ RDY++INV++ +       W KV+VKLDTVREVEEI 
Sbjct: 298  KIFAVSGKIPRTRLRHCVWFPKVRDYVNINVMNPNDPR---IWSKVRVKLDTVREVEEIC 354

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFKD KPWEENL+L+ S LS+KSSTIIVNGM+MMAGERLD  DYH+VAFSL+L+ +RK
Sbjct: 355  FRCFKDSKPWEENLKLVGSCLSSKSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRK 414

Query: 1370 FEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVF 1191
            F+        + W+GW +H  K    S   +D     FPSL+ YY    FVEK+ +C++F
Sbjct: 415  FDMFGKAMNSLEWKGWVSHFFKSLWPSGDLRDLFGCYFPSLIRYYDKIEFVEKLTQCEIF 474

Query: 1190 ESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPDVEGGKPVHSQ 1011
             +EL      ++ ++D   +           L K   K+   D   +  +  G +   + 
Sbjct: 475  VNEL-----GETDDEDQRDLVTKAADVFKNTLLKVAIKM-SLDKTFKPTEGRGEEKTTAT 528

Query: 1010 PNTHVVGDVSPKVVIKDTDSRP---------------------GRMELRAQAKDEFVAYT 894
              + V GDV+ K V  DT S P                     GR+ +R +A  E+  Y 
Sbjct: 529  VASSVAGDVTEKPV--DTVSGPTIQAPLVMRSNTVTPLSEPLDGRLAVRLEAMKEYKRYL 586

Query: 893  RKLHSNAAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETY 720
             KL  N  +NLA LW LCGG S S+N +ST  L +++  DSL+N HK  G W+F  +  Y
Sbjct: 587  LKLQRNTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGSWLFPNDFEY 646

Query: 719  QVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTS 540
             VG+N +GLG K  +E ++V+K C+L+N   +A G   A        LMDGVAGCGKTT+
Sbjct: 647  MVGYNSSGLGEKRSNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTA 705

Query: 539  ICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFD 363
            I   F  E+DLIVTAN+KSSE+I   +F D+PD+G+  VRTADSVLMH       R+LFD
Sbjct: 706  IKKAFVFESDLIVTANKKSSEDIIKAMFNDTPDIGRNKVRTADSVLMHGVAHKVKRVLFD 765

Query: 362  ECGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYR 183
            E  L+HF                GFGDSEQISF++RD+ F MKY +LS D S     T+R
Sbjct: 766  EVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDNSDQQIRTFR 825

Query: 182  CPKDVVHLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMT 6
            CPKDVV  VK +  K  AR SKY+ W + S V +S+     V  +  + L PD  YLTMT
Sbjct: 826  CPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINELPLRPDVHYLTMT 884

Query: 5    Q 3
            Q
Sbjct: 885  Q 885


>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
 sp|Q9DUT3.1|1A_PZSVT RecName: Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase
 emb|CAC08526.1| unnamed protein product [Pelargonium zonate spot virus]
          Length = 962

 Score =  417 bits (1072), Expect = e-131
 Identities = 263/600 (43%), Positives = 339/600 (56%), Gaps = 24/600 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI AVSG IP T++RHC+WFP+ RDY++IN  D         W KV+VKLDTVREVEEI 
Sbjct: 297  KIFAVSGKIPHTRLRHCVWFPKVRDYVNINPSDPR------IWSKVRVKLDTVREVEEIC 350

Query: 1550 FRCFKDQKP-----WEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLL 1386
            FRC KD         E     I S L   SSTIIVNGM+MMAGERLD  DYH+VAFSL+L
Sbjct: 351  FRCPKDVSKIEVMGGESETCGIMSVLY--SSTIIVNGMTMMAGERLDVLDYHHVAFSLML 408

Query: 1385 NCKRKFEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKIC 1206
            + +RKF+        + W+GW +H  K    S   +D     FPSL+ YY    FVEK+ 
Sbjct: 409  SARRKFDMFGKAMNSLEWKGWVSHFFKSLWPSGDLRDLFGRYFPSLIRYYDKIEFVEKLT 468

Query: 1205 ECQVFESELEALSGSKSWED---DAYSVXXXXXXXXXXXLSKTK-----EKLKEKDIQDE 1050
             C+VF +EL  ++  K   D   +A  V           +S  K     E+ KE+     
Sbjct: 469  HCEVFVNEL-GMTDDKEQRDVVAEAADVLKNTLLKVAIKMSLDKTFRPAEEKKEERTTTT 527

Query: 1049 KPDVEGGKPVHSQPNTHVVGDV--SPKVVIKDT-----DSRPGRMELRAQAKDEFVAYTR 891
                     V  +P   V G    +P V  ++T     +   GR+ +R +A  E+  Y  
Sbjct: 528  TVTSSAVGDVDERPAGTVSGPTIQAPSVTQENTVTSLSEPLDGRLAVRLEAMKEYKRYLL 587

Query: 890  KLHSNAAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKR-SGWIFETNETYQ 717
            KL  N  +NLA LW LCGG S S+N +ST  L +++  DSL+N HK   GW+F  +  Y 
Sbjct: 588  KLQKNTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGGWLFPNDFEYM 647

Query: 716  VGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSI 537
            VG+N +GLG K P+E ++V+K C+L+N   +A G   A        LMDGVAGCGKTT+I
Sbjct: 648  VGYNSSGLGEKRPNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTAI 706

Query: 536  CDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDE 360
               F  E+DLIVTAN+KSSE+I   +F+D+PD+G+  VRTADSVLMH       R+LFDE
Sbjct: 707  KRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDE 766

Query: 359  CGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRC 180
              L+HF                GFGDSEQISF++RD+ F MKY +LS D S     T+RC
Sbjct: 767  VSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRC 826

Query: 179  PKDVVHLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            PKDVV  VK +  K  AR SKY+ W + S V +S+     V  +    L PD  YLTMTQ
Sbjct: 827  PKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINESPLRPDVHYLTMTQ 885


>gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus]
          Length = 959

 Score =  394 bits (1012), Expect = e-123
 Identities = 240/597 (40%), Positives = 335/597 (56%), Gaps = 21/597 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P+  +RHC+WF     Y+ +N+ ++  ++H   W+ V+V   TVREVEEIA
Sbjct: 287  KIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ IAS LSAKSST+I+NG ++MAGERL+  +YH VAF+L +N  +K
Sbjct: 344  FRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E ++  Y ++ W+GW NH     WW  ST      + ++FLA  FP L LD Y  S VF
Sbjct: 404  YENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVF 463

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            + KI + + FE++   +S  +S+    +S             S  K + ++K  + EK D
Sbjct: 464  LSKISDVKEFENDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKID 519

Query: 1040 VEGGKPVHSQPNTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHS 879
             E  +     PN  V  D        P+V +    + P     R  A  EF  Y R+L +
Sbjct: 520  EEEFQDAIDIPNDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDA 578

Query: 878  NAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNG 702
            NA +NL RLW + G  G     + + L      D +IN H   G W++     Y+VGFN 
Sbjct: 579  NAVSNLRRLWAIAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFND 637

Query: 701  NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 522
            +GLG K  DE Y+VDK+CI  N   +++  D     S    L DGVAGCGKTT+I   FN
Sbjct: 638  SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697

Query: 521  AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 348
               DL+VTAN+KS+E++R+ LF D+P  ++  + +RTADS LMH      R+L DE GLL
Sbjct: 698  IAEDLVVTANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757

Query: 347  HFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 168
            H+                 FGD+EQISF +RD TF++KY  L  D   IV  T+RCP+DV
Sbjct: 758  HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817

Query: 167  VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +  V+T +K KA  R SKY GW+S S V RS+S   ++     V L  +  YLTMTQ
Sbjct: 818  ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQ 872


>gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus]
          Length = 959

 Score =  391 bits (1005), Expect = e-122
 Identities = 238/597 (39%), Positives = 335/597 (56%), Gaps = 21/597 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P+  +RHC+WF     Y+ +N+ ++  ++H   W+ V+V   TVREVEEIA
Sbjct: 287  KIVATNLRCPKETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ IAS LSAKSST+I+NG ++MAGERL+  +YH VAF+L +N  +K
Sbjct: 344  FRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E ++  Y ++ W+GW NH     WW  ST      + ++FLA  FP L LD Y  S VF
Sbjct: 404  YENIRNFYSEMEWKGWVNHFKTRFWWGGSTAISSTGKIREFLAGKFPWLRLDSYKDSFVF 463

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            + KI + + FE++   +S  +S+    +S             S  K + ++K  + EK D
Sbjct: 464  LSKISDVKEFENDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKID 519

Query: 1040 VEGGKPVHSQPNTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHS 879
             E  +     PN  V  D        P+V +    + P     R  A  EF  Y R+L +
Sbjct: 520  EEEFQDAIDIPNDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDA 578

Query: 878  NAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNG 702
            NA +NL RLW + G  G     + + L      D +IN H   G W++     Y+VG+N 
Sbjct: 579  NAVSNLRRLWAIAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYND 637

Query: 701  NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 522
            +GLG K  DE Y+VDK+CI  N   +++  D     S    L DGVAGCGKTT+I   FN
Sbjct: 638  SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697

Query: 521  AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 348
               DL+VTAN+KS+E++R+ LF ++P  ++  + +RTADS LMH      R+L DE GLL
Sbjct: 698  IAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757

Query: 347  HFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 168
            H+                 FGD+EQISF +RD TF++KY  L  D   IV  T+RCP+DV
Sbjct: 758  HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817

Query: 167  VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +  V+T +K KA  R SKY GW+S S V RS+S   ++     V L  +  YLTMTQ
Sbjct: 818  ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQ 872


>gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus]
          Length = 959

 Score =  390 bits (1003), Expect = e-121
 Identities = 238/597 (39%), Positives = 335/597 (56%), Gaps = 21/597 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P+  +RHC+WF     Y+ +N+ ++  ++H   W+ V+V   TVREVEEIA
Sbjct: 287  KIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ IAS LSAKSST+I+NG ++MAGERL+  +YH VAF+L +N  +K
Sbjct: 344  FRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E ++  Y ++ W+GW NH     WW  ST      + ++FLA  FP L LD Y  S VF
Sbjct: 404  YENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVF 463

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            + KI + + FE++   +S  +S+    +S             S  K + ++K  + EK D
Sbjct: 464  LSKISDVKEFENDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKID 519

Query: 1040 VEGGKPVHSQPNTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHS 879
             E  +     PN  V  DV       P+V +    + P     R  A  EF  Y R+L +
Sbjct: 520  EEEFQDAIDIPNDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDA 578

Query: 878  NAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNG 702
            NA +NL RLW + G  G     + + L      D +IN H   G W++     Y+VG+N 
Sbjct: 579  NAVSNLRRLWAIAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYND 637

Query: 701  NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 522
            +GL  K  DE Y+VDK+CI  N   +++  D     S    L DGVAGCGKTT+I   FN
Sbjct: 638  SGLSPKFDDELYVVDKSCICANYQVLSKNTDNLKAPSCKISLCDGVAGCGKTTAIKSAFN 697

Query: 521  AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 348
               DL+VTAN+KS+E++R+ LF ++P  ++  + +RTADS LMH      R+L DE GLL
Sbjct: 698  IAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757

Query: 347  HFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 168
            H+                 FGD+EQISF +RD TF++KY  L  D   IV  T+RCP+DV
Sbjct: 758  HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817

Query: 167  VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +  V+T +K KA  R SKY GW+S S V RS+S   ++     V L  +  YLTMTQ
Sbjct: 818  ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQ 872


>ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus]
 sp|P27752.1|1A_CCMV RecName: Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase
 gb|AAA46369.1| 1a protein [Cowpea chlorotic mottle virus]
          Length = 958

 Score =  389 bits (1000), Expect = e-121
 Identities = 235/595 (39%), Positives = 330/595 (55%), Gaps = 19/595 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P+  +RHC+WF     Y+ +N+ ++  ++H   W+ V+V   TVREVEEIA
Sbjct: 287  KIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ IAS LSAKSST+I+NG ++MAGERL+  +YH VAF+L +N  +K
Sbjct: 344  FRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E ++  Y ++ W+GW NH     WW  ST      + ++FLA  FP L LD Y  S VF
Sbjct: 404  YENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVF 463

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            + KI + + FE++   +S  +S+    +S             S  K + ++K  + EK D
Sbjct: 464  LSKISDVKEFENDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKID 519

Query: 1040 VEGGKPVHSQPNTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHS 879
             E  +     PN  V  D        P+V +    + P     R  A  EF  Y R+L  
Sbjct: 520  EEEFQDAIDIPNDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDC 578

Query: 878  NAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNG 702
            NA +NL RLW + G  G     + + L      D +IN H   G W++     Y+VGFN 
Sbjct: 579  NAVSNLRRLWAIAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFND 637

Query: 701  NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 522
            +GLG K  DE Y+VDK+CI  N   +++  D     S    L DGVAGCGKTT+I    N
Sbjct: 638  SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSASN 697

Query: 521  AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 348
                L+VTAN+KS+E++R+ LF  +P  ++  + +RTADS LMH      R+L DE GLL
Sbjct: 698  IAEHLVVTANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLPRCKRLLVDEAGLL 757

Query: 347  HFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 168
            H+                 FGD+EQISF +RD TF++KY  L  D   IV  T+RCP+DV
Sbjct: 758  HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817

Query: 167  VHLVKTVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +  V+T+ +G  R SKY GW+S S V RS+S   ++     V L  +  YLTMTQ
Sbjct: 818  ISAVQTLKRGGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQ 871


>gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus]
          Length = 959

 Score =  387 bits (993), Expect = e-120
 Identities = 237/597 (39%), Positives = 333/597 (55%), Gaps = 21/597 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P+  +RHC+WF     Y+ +N+ ++  ++H   W+ V+V   TVREVEEIA
Sbjct: 287  KIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ IAS LSAKSST+I+NG ++MAGERL+  +YH VAF+L +N  +K
Sbjct: 344  FRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E ++  Y ++ W+GW NH     WW  ST      + ++FLA  FP L LD Y  S VF
Sbjct: 404  YENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVF 463

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            + KI + + FE++   +S  +S+    +S             S  K + ++K  + EK D
Sbjct: 464  LSKISDVKEFENDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKID 519

Query: 1040 VEGGKPVHSQPNTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHS 879
             E  +     PN  V  DV       P+V +    + P     R  A  EF  Y R+L +
Sbjct: 520  EEEFQDAIDIPNDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDA 578

Query: 878  NAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNG 702
            NA +NL RLW + G  G     + + L      D +IN H   G W++     Y+VG+N 
Sbjct: 579  NAVSNLRRLWAIAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYND 637

Query: 701  NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 522
            +GLG K  DE Y+VDK+CI  N   +++  D     S    L DGVAGCGKTT+I   FN
Sbjct: 638  SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697

Query: 521  AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 348
               DL+VTAN+KS+E++R+ LF ++P  ++   +   ADS LMH      R+L DE GLL
Sbjct: 698  IAEDLVVTANKKSAEDVREALFPENPSSEIALSYKGPADSALMHGLPQCKRLLVDEAGLL 757

Query: 347  HFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 168
            H+                 FGD+EQISF +RD TF++KY  L  D   IV  T+RCP+DV
Sbjct: 758  HYGQLLAVAALCKCQSFLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817

Query: 167  VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +  V+T +K KA  R SKY GW+S S V RS+S   ++     V L  +  YLTMTQ
Sbjct: 818  ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQ 872


>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus]
 dbj|BAD98316.2| 1a protein [Cassia yellow blotch virus]
          Length = 955

 Score =  383 bits (983), Expect = e-118
 Identities = 234/603 (38%), Positives = 334/603 (55%), Gaps = 27/603 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A     P+  +RHC+WF     Y+ +NV  +  +     WR+V+V + TVREVEEI+
Sbjct: 282  KIIATDLPCPKETLRHCVWFENLSQYVAVNVPVDFNLCR---WRRVRVAVSTVREVEEIS 338

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERL   DYH VAF+L LN   K
Sbjct: 339  FRCFKENKEWTENMKAVASVLSAKSSTVIINGQAIMAGERLSIDDYHLVAFALTLNLYMK 398

Query: 1370 FEELQCVYKKIVWQGWWNH-CTKWW-------SESTRFQDFLATCFPSL-LD-YYHSKVF 1221
            +E L+  ++ + W GWWNH  T++W              + L   FP L LD Y  S  F
Sbjct: 399  YENLRSFHEGLKWGGWWNHFLTRFWWRGDVPTDSRPWLVNLLGQWFPRLRLDTYAESCEF 458

Query: 1220 VEKICECQVFESELEALSG--SKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEK 1047
            + KI +   FE +    SG   + +  +A               S+ K+K KEK+   ++
Sbjct: 459  IAKISDVAEFECD-SVPSGFLQRFFHSEADLQRRIQVELDTVKDSRDKKK-KEKEKASKE 516

Query: 1046 PDVEGGKPV----HSQPNTHVVGDVSPKV------VIKDTDSRPGRMELRAQAKDEFVAY 897
            P  E  +PV       P+  +  DV P        V K T SR   ++       E+  Y
Sbjct: 517  PKSE--EPVEEVFEEAPDDFIRDDVKPATDGGTVCVDKSTVSRELSLK-------EYSNY 567

Query: 896  TRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFH-KRSGWIFETNETY 720
             ++LH N+ +NL R+W L GG G+    + + L      D LIN H   SGW++ T + Y
Sbjct: 568  CQRLHENSLSNLRRIWLLAGGKGT-VISNKSMLETYHRVDCLINAHIAGSGWLYPTEQEY 626

Query: 719  QVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTS 540
             +G+N +GLG K   E +IVDK+C++ N AS+A+ +        +  L DGVAGCGKTT+
Sbjct: 627  TIGYNDDGLGPKQAGETFIVDKSCVISNNASLAKASQGLKAPKCSVTLCDGVAGCGKTTA 686

Query: 539  ICDQFNAETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILF 366
            I + F+ E D+IVTAN+KS+ ++R+ +F + P  ++  +F+RTADS LMH   +  R+L 
Sbjct: 687  IKNTFSIEKDIIVTANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLPSCQRLLI 746

Query: 365  DECGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTY 186
            DE GLLHF                 FGDSEQISF +RD TF+ ++ ++  D   +V  TY
Sbjct: 747  DEAGLLHFGQVLAVAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTY 806

Query: 185  RCPKDVVHLVKTVIK--GKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLT 12
            RCP+DVV  V  + +  GK R SKY  W S+S V +S+SA   +  L  + +EP   Y T
Sbjct: 807  RCPQDVVAAVVKMKRRTGKLRESKYSSWISRSKVEKSLSAR-PISSLNQIVIEPHKFYQT 865

Query: 11   MTQ 3
            MTQ
Sbjct: 866  MTQ 868


>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
 dbj|BAI40161.1| 1a protein [Melandrium yellow fleck virus]
          Length = 948

 Score =  378 bits (970), Expect = e-116
 Identities = 229/604 (37%), Positives = 336/604 (55%), Gaps = 28/604 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P   +RHC+WF     Y+ +NV D+   ++   W+ V+V + TVREVEEIA
Sbjct: 282  KIIATNVKCPPETLRHCVWFENISQYVSVNVPDDWSFAN---WKLVRVAISTVREVEEIA 338

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGER+D  DYH VAFSL +N  +K
Sbjct: 339  FRCFKENKDWAENMKAVASVLSAKSSTVIINGQAIMAGERIDILDYHLVAFSLTMNLYQK 398

Query: 1370 FEELQCVYKKIVWQGWWNHC-TKWWSESTR------FQDFLATCFP--SLLDYYHSKVFV 1218
            +E L+  + ++ W+GW+NH  ++ W            + +LA  FP   L  Y  + +F+
Sbjct: 399  YERLRDYHDELEWKGWFNHFKSRLWKGGKGVDGVGFIRGYLADKFPRLKLNTYMDTLMFI 458

Query: 1217 EKICECQVFESELEALSGSKSW---EDDAYSVXXXXXXXXXXXLS-KTKEKLKEKDIQDE 1050
             KI + + FE +   +S  +S+   ++DAY              S K   + +E +  D 
Sbjct: 459  TKISDVKEFECDSVPVSRLRSFFCDKNDAYERAVEEFLDAQDKKSRKAVVRKQEDEFVDA 518

Query: 1049 KPDVEGGKP----VHSQPNT-HVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKL 885
              D+E   P    V  +P     +G++ PKVV             R+ A  EF  Y  + 
Sbjct: 519  SEDLETSGPVVVDVKEEPKAPTTIGNLDPKVV------------ARSGAISEFTEYCDRQ 566

Query: 884  HSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGF 708
            H N  +NL +LW L G  G D   + + ++     D L+N H  SG W++     Y VG+
Sbjct: 567  HLNTTSNLHQLWTLMGCKG-DQVHNKSVVDTYHRTDDLVNVHFPSGRWMYPHEYEYVVGY 625

Query: 707  NGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQ 528
            N +GL VK  +E Y+VDKTCI+ N   +AE        +    + DGVAGCGKTT+I + 
Sbjct: 626  NDDGLSVKFDNELYVVDKTCIVSNQQKLAEACRGLSVPTCPVYMCDGVAGCGKTTAIKNT 685

Query: 527  FNAETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECG 354
            F  E D++VTANRKS++++R  +F ++P  ++  R++RTADS +MH      R+L DE G
Sbjct: 686  FQFERDVVVTANRKSADDVRAAIFPENPNNEIATRYIRTADSAIMHGLPKCKRVLIDEAG 745

Query: 353  LLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPK 174
            L+H+                 FGD+EQISF +RD TF+MK++ ++ D   +VK TYRCP+
Sbjct: 746  LMHYGQLLAVAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYDSRELVKTTYRCPQ 805

Query: 173  DVVHLVKTVIKGKA--RHSKYHGWESKSNV-----VRSVSAPIDVVGLPGVKLEPDWVYL 15
            DVV  VK ++K K   R SKY+ W SKS V      RS+S+P        + +E +  YL
Sbjct: 806  DVVDAVK-LLKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQ------INIEVNKFYL 858

Query: 14   TMTQ 3
            TMTQ
Sbjct: 859  TMTQ 862


>gb|ATU46942.1| 1a protein [Sambucus virus S]
          Length = 965

 Score =  375 bits (963), Expect = e-115
 Identities = 225/604 (37%), Positives = 325/604 (53%), Gaps = 28/604 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +  +PR  +RHC+WF    +Y+++ + +   +   L W+ V+V   TVREVEEI+
Sbjct: 282  KIIATNLRVPRETLRHCVWFENISNYVYVKIPEEWNL---LKWKNVRVAKTTVREVEEIS 338

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFKD K W ENL+ +AS LSAKSST+I+NG ++MAGERL+ ++YH+VAF+L LN  +K
Sbjct: 339  FRCFKDNKEWTENLKAVASVLSAKSSTVIINGQAIMAGERLEVSEYHFVAFALTLNLYQK 398

Query: 1370 FEELQCVYKKIVWQGWWNH--CTKWWSEST------RFQDFLATCFPSL-LD-YYHSKVF 1221
            +E L+  Y  + W+GW+NH     WW          + +  LA+ FP L LD Y  S  F
Sbjct: 399  YERLKEFYDDLEWKGWFNHFKTRLWWGGDVSIGGPGKVRAALASTFPFLKLDSYKDSLTF 458

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKE--------- 1068
            + KI + + FE +   +S  +S       +             K K++L++         
Sbjct: 459  LSKISDVKEFECDSVPVSRLRSLLGGEDLLQRAVDELNTAKTKKEKKRLEQQIRLSSEEA 518

Query: 1067 ---KDIQDEKPDVEGGKPVHSQPNTHVVGDV--SPKVVIKDTDSRPGRMELRAQAKDEFV 903
               +D  DE P +E       Q     +  V   P+      D+   RM  R  A  E+ 
Sbjct: 519  EIFEDASDEIPPLESVCDDVKQAAGPAINGVMDPPESSHSVRDNLDPRMVSRTGALREYK 578

Query: 902  AYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNE 726
             Y  +LH N ++NL +LW L  G+ +    +   +   +  D +IN HK  G W F    
Sbjct: 579  EYCERLHENTSSNLRQLWTL-SGAKAGQVHNMAMIRTYQRVDDMINVHKPDGTWAFPLKY 637

Query: 725  TYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKT 546
             Y VG+N  GLG K  +E Y+VDKTC+  N  ++A+        +    L DGVAGCGKT
Sbjct: 638  EYVVGYNEKGLGPKFDNELYLVDKTCLCSNQEALAKACQDVSVPNCEIRLCDGVAGCGKT 697

Query: 545  TSICDQFNAETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRI 372
            T+I + F  E D++VTANRKS++++R  LF  +P  +   R++RTADS LMH      R+
Sbjct: 698  TAIKNAFQFEEDVVVTANRKSADDVRKALFPKNPNTETALRYIRTADSALMHGLPPCKRL 757

Query: 371  LFDECGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKH 192
            L DE GL+H+                 FGD+EQISF +RD  F+M +++L  D   +   
Sbjct: 758  LIDEAGLMHYGQLLAVTSVSRCNQVLAFGDTEQISFKSRDADFRMTHNKLEYDHREVTTD 817

Query: 191  TYRCPKDVVHLVKTVIKGKA-RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYL 15
            TYRCP+DVV  VK + K    RH+KY  W SKS V +S+S    +  +  + +E D  YL
Sbjct: 818  TYRCPQDVVAAVKNLKKKCGNRHTKYESWRSKSKVEKSLSKR-SITSVNQISIEADKFYL 876

Query: 14   TMTQ 3
            TMTQ
Sbjct: 877  TMTQ 880


>ref|NP_689392.1| 1a protein [Spring beauty latent virus]
 dbj|BAC10645.1| 1a protein [Spring beauty latent virus]
          Length = 958

 Score =  374 bits (960), Expect = e-115
 Identities = 229/594 (38%), Positives = 324/594 (54%), Gaps = 18/594 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P  K+RHCIWF     Y+ +N+ D   ++    W+  +V   TVREVEEIA
Sbjct: 286  KIVATNLRCPVEKLRHCIWFENISQYVAVNIPDGWSLTK---WKNARVARSTVREVEEIA 342

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN+R +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L +N  +K
Sbjct: 343  FRCFKENKDWTENMRSVASILSAKSSTVIINGQAIMAGERLDLEDYHLVAFALTMNLYQK 402

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW------SESTRFQDFLATCFPSL-LDYYH-SKVF 1221
            +E ++ ++  + W+GW +H     WW      S+    + FL++ FP L LD Y  SK F
Sbjct: 403  YERIRAIHDGMQWKGWVDHFKTRIWWNGDVGGSKVGVIRSFLSSHFPFLRLDSYEDSKCF 462

Query: 1220 VEKICECQVFESELEALSGSKSWEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKPD 1041
            +EKI + + FES+    S    +                   SK +EK K K++  E  +
Sbjct: 463  LEKIVDVKEFESDSVPSSLLSRFFSGNEDFEKRVDDTVKSARSKREEKKKLKELVLESSE 522

Query: 1040 VEGGKPVHSQPNTHVVGDVSP----KVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNA 873
            V   +     P+  V  D  P    +V   D D       +++ A  EF  Y ++L  NA
Sbjct: 523  VY--EDAVDAPSESVRDDDKPETGREVRGTDCDLSSSDCNVKSFAIKEFADYNQRLSDNA 580

Query: 872  AANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNG 696
             +NL R+W L  G   ++  ST+ L      D ++N H   G W++     Y VGFN +G
Sbjct: 581  VSNLRRIWTL-AGCNKESVNSTSILETYHRIDDMLNIHYPDGRWLYPNKYEYMVGFNDSG 639

Query: 695  LGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAE 516
            LG +  DE Y+VDKTC + N   IA+        + +  L DGVAGCGKTT+I   F++ 
Sbjct: 640  LGYRFADELYLVDKTCGIANCEEIAKACKALKAPNCSITLCDGVAGCGKTTAIKAAFDSS 699

Query: 515  TDLIVTANRKSSEEIRDKLFKD-SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFX 339
            TDLIVTANRKS+E++R+ LF D +  +    VRTADS +MH      R+L DE GLLH+ 
Sbjct: 700  TDLIVTANRKSAEDVREALFGDVNSKIANEVVRTADSAIMHGLPKCSRLLIDEAGLLHYG 759

Query: 338  XXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHL 159
                            FGD+EQISF +RD TF+ +++ +  D   +V  T+RCP+DV+  
Sbjct: 760  QLLAVAALCGCETVLAFGDTEQISFKSRDVTFKFRHAVIEYDRRDVVTETFRCPEDVISA 819

Query: 158  VKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +K  +K K   R SKY  W ++S+V  S+     V  +  V +E    YLTMTQ
Sbjct: 820  IKK-LKRKCGNRDSKYLSWRTQSSVKTSLGMR-SVSSVTQVNIEKHKFYLTMTQ 871


>ref|NP_659000.1| 1a protein [Broad bean mottle virus]
 sp|Q00020.1|1A_BBMV RecName: Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase
 gb|AAA42740.1| 1a protein [Broad bean mottle virus]
          Length = 966

 Score =  371 bits (952), Expect = e-114
 Identities = 233/604 (38%), Positives = 327/604 (54%), Gaps = 28/604 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   P   +RHCIWF     YL + +     ++    W+ V+V   TVREVEEI+
Sbjct: 288  KIIATNVRCPPESLRHCIWFENISQYLAVQIPIGYNLND---WKTVRVARATVREVEEIS 344

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN+R +AS LSAKSST+I+NG S+M+GERLD  +YH VAFSL LN  +K
Sbjct: 345  FRCFKENKDWTENMRSVASILSAKSSTVIINGQSIMSGERLDVLEYHLVAFSLTLNLYQK 404

Query: 1370 FEELQCVYKKIVWQGWWNH--CTKWW------SESTRFQDFLATCFP--SLLDYYHSKVF 1221
            +E+L+    ++ W+GW NH     WW      +E    ++FLA   P   L  Y  S  F
Sbjct: 405  YEKLRNFQGELEWKGWANHFKTRLWWCGRTVSTEGGFLRNFLADKIPWLKLNTYADSLDF 464

Query: 1220 VEKICECQVFESELEALSGSKSW----EDDAYSVXXXXXXXXXXXLSKTKEKLKE-KDIQ 1056
            + KI E + FE +    S  +S+    E+                ++K  E  KE  D  
Sbjct: 465  ITKISEVESFEVDSVPTSRLRSFFQKEENIVERAASEIMSANARRIAKKAEMSKEFDDFV 524

Query: 1055 DEKPDVEGGKPVHSQPNTHVVGDV--------SPKVVIKDTDSRPGRMELRAQAKDEFVA 900
            D   +      V    NT V  DV        + + ++ D D+      L+  A +EF  
Sbjct: 525  DAPEEFAPEDVVEEVINTPVTQDVKLRQSKPETARSIVLDPDA-----VLKNGAINEFAD 579

Query: 899  YTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNET 723
            Y+++LH N  +NL  LW L G  G++   + +        D ++N H  +G W++     
Sbjct: 580  YSKRLHENTVSNLRHLWTLMGCRGNE-IHNKSVAETYHRVDDMVNVHFPNGHWMYPLKYE 638

Query: 722  YQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTT 543
            Y VG+N  GLG K  +E Y+VDKTC   N  +IA+   K    + + V++DGVAGCGKTT
Sbjct: 639  YTVGYNDGGLGEKFENELYVVDKTCSCANAKAIADACKKVSAPTCSVVMVDGVAGCGKTT 698

Query: 542  SICDQFNAETDLIVTANRKSSEEIRDKLFKDSPD--LGKRFVRTADSVLMHDCITAPRIL 369
            +I + F  E D+IVTANRKS+E++R  +F D+ D  +  + VRTADS +MH      R+L
Sbjct: 699  AIKETFRFEKDIIVTANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLPECHRLL 758

Query: 368  FDECGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHT 189
             DE GLLH+                 FGD+EQISF +RD TF+MKY  +  D+  IV  T
Sbjct: 759  VDEAGLLHYGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKT 818

Query: 188  YRCPKDVVHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYL 15
            +RCP+DVV  VK ++K K   R SKY+GW S S V +S+S    +V +  V +E    YL
Sbjct: 819  FRCPQDVVSAVK-ILKRKCANRSSKYNGWVSSSKVEKSLSKS-RIVSINQVSMEKHKFYL 876

Query: 14   TMTQ 3
            TMT+
Sbjct: 877  TMTE 880


>ref|NP_041196.1| replicase [Brome mosaic virus]
 sp|P03588.1|1A_BMV RecName: Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase
 emb|CAA26228.1| unnamed protein product [Brome mosaic virus]
          Length = 961

 Score =  370 bits (951), Expect = e-114
 Identities = 232/595 (38%), Positives = 328/595 (55%), Gaps = 19/595 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKESKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKSW--EDDAYSVXXXXXXXXXXXLSKTKEKL--KEKDIQDE 1050
             ++   + FE +   +S  +++  E+D +              SK K K+    +  Q+E
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEE 523

Query: 1049 KPDV-EGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNA 873
              D  E   P     +   V DV P   +        R   R  A  EFV Y ++LH+N+
Sbjct: 524  FHDAPESSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNS 583

Query: 872  AANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNG 696
             +NL  LW + GG GS+   + +        D ++N H  +G W++     Y VG+N +G
Sbjct: 584  ESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHG 642

Query: 695  LGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAE 516
            LG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+I D F   
Sbjct: 643  LGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMG 702

Query: 515  TDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHF 342
             DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L DE GLLH+
Sbjct: 703  EDLIVTANRKSAEDVRMALFPDTYNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHY 762

Query: 341  XXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 162
                             FGD+EQISF +RD  F++ +  L  D   +V  TYRCP+DV+ 
Sbjct: 763  GQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDVIA 822

Query: 161  LVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
             V  ++K K   R +KY  W S+S V RS++      GL  V ++P+  YLTMTQ
Sbjct: 823  AV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQ 875


>dbj|BAJ41520.1| 1a protein [Brome mosaic virus]
          Length = 961

 Score =  368 bits (945), Expect = e-113
 Identities = 229/595 (38%), Positives = 328/595 (55%), Gaps = 19/595 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTVLRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKSW--EDDAYSVXXXXXXXXXXXLSKTKEKL--KEKDIQDE 1050
             ++   + FE +   +S  +++  E+D +              SK K K+    +  Q+E
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEE 523

Query: 1049 KPDV-EGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNA 873
              D  E   P     +   V DV P   +        R   R  A  EFV Y ++LH+N+
Sbjct: 524  FHDAPESSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNS 583

Query: 872  AANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNG 696
             +NL  LW + GG GS+   + +        D ++N H  +G W++     Y VG+N +G
Sbjct: 584  ESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHG 642

Query: 695  LGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAE 516
            LG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+I D F   
Sbjct: 643  LGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMG 702

Query: 515  TDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHF 342
             DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L DE GLLH+
Sbjct: 703  EDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHY 762

Query: 341  XXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 162
                             FGD+EQISF +RD  F++ +  L  D   +V  TYRCP+DV+ 
Sbjct: 763  GQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDVIA 822

Query: 161  LVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
             +  ++K K   R +KY  W S+S V RS++    +  +  V ++P+  YLTMTQ
Sbjct: 823  AI-NLLKRKCGNRDTKYQSWTSESKVSRSLTKR-RIASVLQVTIDPNRTYLTMTQ 875


>gb|ADW09019.1| replication protein 1a [Brome mosaic virus]
          Length = 961

 Score =  368 bits (944), Expect = e-113
 Identities = 231/595 (38%), Positives = 327/595 (54%), Gaps = 19/595 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKSW--EDDAYSVXXXXXXXXXXXLSKTKEKL--KEKDIQDE 1050
             ++   + FE +   +S  +++  E+D +              SK K K+    +  Q+E
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEMPQEE 523

Query: 1049 KPDV-EGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNA 873
              D  E   P     +   V DV P   +        R   R  A  EFV Y ++LH+N+
Sbjct: 524  FHDAPESSSPESVSDDVKPVTDVVPGAEVSVAVPTDPRGISRHGAMKEFVRYCKRLHNNS 583

Query: 872  AANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNG 696
             +NL  LW + GG GS+   + +        D ++N H  +G W++     Y VG+N + 
Sbjct: 584  ESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHS 642

Query: 695  LGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAE 516
            LG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+I D F   
Sbjct: 643  LGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMG 702

Query: 515  TDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHF 342
             DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L DE GLLH+
Sbjct: 703  EDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCYRLLVDEAGLLHY 762

Query: 341  XXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 162
                             FGD+EQISF +RD  F++ +  L  D   +V  TYRCP+DV+ 
Sbjct: 763  GQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDVIA 822

Query: 161  LVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
             V  ++K K   R +KY  W S+S V RS++      GL  V ++P+  YLTMTQ
Sbjct: 823  AV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQ 875


>emb|CAA41361.1| 1a protein [Brome mosaic virus]
          Length = 961

 Score =  367 bits (942), Expect = e-112
 Identities = 231/599 (38%), Positives = 327/599 (54%), Gaps = 23/599 (3%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKS-WEDDAYSVXXXXXXXXXXXLSKTKEKLKEKDI------ 1059
             ++   + FE +   +S  ++ W +    V            +KTK   K+  +      
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTE----VDLFDRLEHEVQTAKTKRSKKKAIVPPAAEI 519

Query: 1058 -QDEKPDV-EGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKL 885
             Q+E  D  E   P     +   V DV P   +        R   R  A  EFV Y ++L
Sbjct: 520  PQEEFHDAPESSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRL 579

Query: 884  HSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGF 708
            H+N+ +NL  LW + GG GS+   + +        D ++N H  +G W++     Y VG+
Sbjct: 580  HNNSESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGY 638

Query: 707  NGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQ 528
            N +GLG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+I D 
Sbjct: 639  NEHGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDA 698

Query: 527  FNAETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECG 354
            F    DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L DE G
Sbjct: 699  FRMGEDLIVTANRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHGVPSCHRLLVDEAG 758

Query: 353  LLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPK 174
            LLH+                 FGD+EQISF +RD  F++ +  L  D   +V  TYRCP+
Sbjct: 759  LLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQ 818

Query: 173  DVVHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            DV+  V  ++K K   R +KY  W S+S V RS+ A   +  +  V ++P+  YLTMTQ
Sbjct: 819  DVIAAV-NLLKRKCGNRDTKYQSWTSESKVSRSL-AKRRITSVLQVTIDPNRTYLTMTQ 875


>gb|AOH95427.1| 1a protein [Brome mosaic virus]
          Length = 961

 Score =  367 bits (941), Expect = e-112
 Identities = 233/603 (38%), Positives = 328/603 (54%), Gaps = 27/603 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKSW--EDDAYSVXXXXXXXXXXXLSKTKEKLKEKDIQDEKP 1044
             ++   + FE +   +S  +++  E+D +              SK K K+       E P
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPP---AAEIP 520

Query: 1043 DVEGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPG-----------RMELRAQAKDEFVAY 897
              E      S     V  DV P     +TD  PG           R   R  A  EFV Y
Sbjct: 521  QEEFHDAPESSSPESVSDDVKP-----ETDVVPGAEVSVEVPTDPRGISRHGAMKEFVRY 575

Query: 896  TRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETY 720
             ++LH+N+ +NL  LW + GG GS+   + +        D ++N H  +G W++     Y
Sbjct: 576  CKRLHNNSESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDY 634

Query: 719  QVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTS 540
             VG+N +GLG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+
Sbjct: 635  TVGYNEHGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTA 694

Query: 539  ICDQFNAETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILF 366
            I D F    DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L 
Sbjct: 695  IKDAFRMGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLV 754

Query: 365  DECGLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTY 186
            DE GLLH+                 FGD+EQISF +RD  F++ +  L  D   +V  TY
Sbjct: 755  DEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTY 814

Query: 185  RCPKDVVHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLT 12
            RCP+DV+  V  ++K K   R +KY  W S+S V RS++    +  +  V ++P+  YLT
Sbjct: 815  RCPQDVIAAV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKR-RITSVLQVTIDPNRTYLT 872

Query: 11   MTQ 3
            MTQ
Sbjct: 873  MTQ 875


>gb|ABF83485.1| 1a [Brome mosaic virus]
          Length = 961

 Score =  367 bits (941), Expect = e-112
 Identities = 230/600 (38%), Positives = 329/600 (54%), Gaps = 24/600 (4%)
 Frame = -2

Query: 1730 KITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIA 1551
            KI A +   PR  +RHC+WF     Y+ +++ ++  ++    W+ V+V   TVREVEEIA
Sbjct: 287  KIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIA 343

Query: 1550 FRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1371
            FRCFK+ K W EN++ +AS LSAKSST+I+NG ++MAGERLD  DYH VAF+L LN  +K
Sbjct: 344  FRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQK 403

Query: 1370 FEELQCVYKKIVWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFV 1218
            +E+L  +   + W+GW +H     WW  +S+R    +   LA+ FP L LD Y  S  F+
Sbjct: 404  YEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFL 463

Query: 1217 EKICECQVFESELEALSGSKSW--EDDAYSVXXXXXXXXXXXLSKTKEKLKEKDI----- 1059
             ++   + FE +   +S  +++  E+D +              +KTK   K+  +     
Sbjct: 464  TRLSNVEEFEQDSVPISRLRTFWTEEDLFD-----RLEHEVQTAKTKRSKKKAIVPPAAE 518

Query: 1058 --QDEKPDV-EGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRK 888
              Q+E  D  E   P     +   V DV P   +        R   R  A  EFV Y ++
Sbjct: 519  IPQEEFHDAPESSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKR 578

Query: 887  LHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVG 711
            LH+N+ +NL  LW + GG GS+   + +        D ++N H  +G W++     Y VG
Sbjct: 579  LHNNSESNLRHLWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVG 637

Query: 710  FNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICD 531
            +N +GLG K  DE YIVDKTC   NL  IAE + K    +    ++DGVAGCGKTT+I D
Sbjct: 638  YNEHGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKD 697

Query: 530  QFNAETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDEC 357
             F    DLIVTANRKS+E++R  LF D  +  +    VRTADS +MH   +  R+L DE 
Sbjct: 698  AFRMGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEA 757

Query: 356  GLLHFXXXXXXXXXXXXXXXXGFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 177
            GLLH+                 FGD+EQISF +RD  F++ +  L  D   +V  TYRCP
Sbjct: 758  GLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCP 817

Query: 176  KDVVHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 3
            +DV+  V  ++K K   R +KY  W S+S V RS++    +  +  V ++P+  YLTMTQ
Sbjct: 818  QDVIAAV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKR-RITSVLQVTIDPNRTYLTMTQ 875