BLASTX nr result
ID: Rehmannia29_contig00039252
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00039252
(7054 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 2032 0.0
gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotc... 2031 0.0
gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotc... 2030 0.0
gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotc... 2029 0.0
gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotc... 2029 0.0
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 2028 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 2020 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 2020 0.0
gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus] 2017 0.0
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 2003 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 2000 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 1999 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 1997 0.0
gb|AKN09002.1| replicase [Apricot vein clearing associated virus] 1241 0.0
gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus] 1073 0.0
gb|AKN08994.1| replicase [Caucasus prunus virus] 1001 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 961 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 957 0.0
gb|AQQ73540.1| replicase [Apricot vein clearing associated virus] 956 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 939 0.0
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 2032 bits (5265), Expect = 0.0
Identities = 1064/1999 (53%), Positives = 1356/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N D ++K V Y+ S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEE---RKIESAQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFKVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I +GVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LL ++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSL+ I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREE--NYKNTCLINAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++G E +S N +
Sbjct: 1049 KGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I T++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGTDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RL+ NI Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLIGGQNIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRA
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRA 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQRI + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRL+FR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIH
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2031 bits (5263), Expect = 0.0
Identities = 1063/1999 (53%), Positives = 1357/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N D ++K V Y S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESAQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFQVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I DGVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LLD++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRD+E VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDSERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTCLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIARLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++GL E +S N +
Sbjct: 1049 KGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGLDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RLV +I Y+Y + R+++ +F+RF D+P + + + K+WI + I +R
Sbjct: 1287 RLVGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQKLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFDRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQR+ + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
I+ KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IKEKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+H
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILSFEVH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQEIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2030 bits (5259), Expect = 0.0
Identities = 1062/1999 (53%), Positives = 1355/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNAFNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSKNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N D ++K V Y S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESAQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFARA-----VIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N V+ +D KK+ SY S + CT + +
Sbjct: 536 KEFQVDPFISNSITEFTLLEVLLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A E ++ E +R +FS+WL++ + Y L ++I DGVFME ELIYLF
Sbjct: 692 GNCFFSAFAETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVVHF----EDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFK-LLDNLEG 2433
+ RG+ +++H ++ ++ G EEGH+ G+HF+ ETY S + LLD++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRD+E VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDSERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E K N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYK--NTCLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK---CPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++GL E +S N +
Sbjct: 1049 KGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGLDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRAKQIGIDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCV+SPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSRKKGNFCVISPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RL+ +I Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLIGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKE-NGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQR+ + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+H
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2029 bits (5258), Expect = 0.0
Identities = 1061/1999 (53%), Positives = 1356/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
G+LER++LPF+N D ++K V Y S + E R + K P L+I W
Sbjct: 479 GHLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESVQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFQVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I DGVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LLD++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTCLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++G+ E +S N +
Sbjct: 1049 KGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGIDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGVDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RLV +I Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLVGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQR+ + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRVEKDENEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+H
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILSFEVH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2029 bits (5257), Expect = 0.0
Identities = 1061/1999 (53%), Positives = 1356/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
G+LER++LPF+N D ++K V Y S + E R + K P L+I W
Sbjct: 479 GHLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESVQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFQVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I DGVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LLD++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTCLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++G+ E +S N +
Sbjct: 1049 KGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGIDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RLV +I Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLVGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQR+ + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRVEKDENEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+H
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILSFEVH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA replication polyprotein; AltName: Full=ORF1
protein; Includes: RecName: Full=Viral methyltransferase;
Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
dioxygenase; Includes: RecName: Full=Protease; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase
emb|CAC39422.1| hypothetical protein [Citrus leaf blotch virus]
Length = 1962
Score = 2028 bits (5254), Expect = 0.0
Identities = 1062/1999 (53%), Positives = 1354/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N D ++K V Y+ S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEE---RKIESAQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFKVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDVSDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I +GVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LL ++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSL+ I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTCLINAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + NHFS + M R+ SHL +K NV+ ++G +S N +
Sbjct: 1049 KGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RL+ NI Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLIGGQNIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRA
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRA 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQR+ + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIH
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2020 bits (5234), Expect = 0.0
Identities = 1058/1999 (52%), Positives = 1351/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLDNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE R DD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADD 478
Query: 1441 GYLERVKLPFFN---YKGDPRKKEVYHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N Y R+ VY+ S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEE---RRIESAQKGPNKMLQIEWHGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFKVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L E + L
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPL 632
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
G +E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 633 GF-MKECLEEIPIETEPSLEERGQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I DGVFME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LL ++
Sbjct: 751 VFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ +RVSITFR HVR ++G I+ +E +N LI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTRLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V +++++N + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K +++ ++G E +S N +
Sbjct: 1049 KGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTVVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQARYHN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RLV +I Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLVGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQRI + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+H
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
YNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 AYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2020 bits (5234), Expect = 0.0
Identities = 1059/1999 (52%), Positives = 1355/1999 (67%), Gaps = 54/1999 (2%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + IY A +T++SHSEFRN HFA++++ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-------------- 375
+EL+PNGYLPHSHP SK ENH+L+ VLP V+N + + CSIKE K
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 376 ---LNCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGK 540
LN + + N + +N +V +DVSRY E +F + FS K++
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGGPELFSRNFIKSLEN 178
Query: 541 HKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRD 720
++ FFHDEVHHW K +F FL + +R +FTVVYPPE+L + NSQNPK+Y FK+ +
Sbjct: 179 KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238
Query: 721 KLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITE 900
+LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFEI G+L+T+
Sbjct: 239 RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298
Query: 901 DSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQII 1080
LFF+D++ +DM +F +RF+ Y++FP++ H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299 SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358
Query: 1081 GDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSN 1260
GDDVE+KEFLFFEQ CKR IER TS+G+FGHS E L + P+ R WK N
Sbjct: 359 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418
Query: 1261 IFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDD 1440
F+FL+ LGTL + ++R C+ H++E + FEVV D + +LDPL F NENFNE+RVDD
Sbjct: 419 TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478
Query: 1441 GYLERVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-- 1599
GYLER++LPF+N D ++K V Y S + E R + A K P L+I W
Sbjct: 479 GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESAQKGPNKMLQIEWYGI 535
Query: 1600 ---TDDPSFINFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFD 1755
DP N + +D KK+ SY S + CT + +
Sbjct: 536 KEFKVDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYL 580
Query: 1756 EFLRPSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSEL 1932
FL C +GLDG + +E LE + ++ + D + L ++ +I ++
Sbjct: 581 TFL------CAEGLDGFNLEEHLERRLKAAGHDTSDDEEEELTSV---EQTGPIKILADP 631
Query: 1933 GIDEREAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPAD 2094
E + + P T+ +E G +++ +++Y+ +F C +HG I P+D
Sbjct: 632 LSFMNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 2095 GNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFA 2268
GNCFF A TE ++ E +R +FS+WL++ + Y L ++I DG+FME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFC 750
Query: 2269 LSRGLKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEG 2433
+ RG+ +++ H ++ ++ G EEGH+ G+HF+ ETY S + + LL ++
Sbjct: 751 VFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPC 810
Query: 2434 YHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICD 2613
+ KF F P+HF C FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 2614 PDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMED 2793
++N ALI +YE +SLG HRDNE VY D ILTV G F IE ++ F M
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 2794 ASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVA 2973
SFF MP GFQK+ARH V+ RVSITFR HVR ++G I+ +E +N CLI A +
Sbjct: 931 GSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREE--NYKNTCLIDAFS 988
Query: 2974 GALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMD 3153
A+K S++ + L + N +W ++ G S+EDC E L V ++++++ + V+
Sbjct: 989 KAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVVLG 1048
Query: 3154 FGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLL 3324
G I + + NHFS + M R+ SHL +K NV+ ++G E +S N +
Sbjct: 1049 KGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKI 1108
Query: 3325 PFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFA 3504
F AN EF ++L SFL TTG+ LG+ LDNG K+F K + I ++ + GFA
Sbjct: 1109 QFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFA 1166
Query: 3505 GSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSN 3684
GSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV TFE FIK ++S
Sbjct: 1167 GSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSK 1226
Query: 3685 LELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVD 3864
L+LIVIDE+TLFPNGY+D L+Y+L +++LLFDPLQAR+HN+ D+ ILTF HDVD
Sbjct: 1227 LDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHDVD 1286
Query: 3865 RLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERP 4038
RLV +I Y+Y + R+++ +F+RF D+P + + + ++WI + I +R
Sbjct: 1287 RLVGGQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344
Query: 4039 FP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRA 4215
P DVLLV+S +EK+ ++ + +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404
Query: 4216 KERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAID 4395
+ R S + LGG+++F K L I+ GEK+ M++ NLI ++ G D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRD 1463
Query: 4396 EMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDL 4575
E+DREERLEGDPFLKPFIF+GQRI + E E E V I+EP CQTHLYI+EPNF CYNFD
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523
Query: 4576 IRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVK 4755
IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+MTFWMAV+
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVR 1583
Query: 4756 KRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQ 4935
KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N FE KKL+KS
Sbjct: 1584 KRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSC 1643
Query: 4936 ATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCR 5115
TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCR
Sbjct: 1644 GTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 1703
Query: 5116 YLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIH 5295
YLE QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIH
Sbjct: 1704 YLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIH 1763
Query: 5296 LMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRR 5475
LMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRR
Sbjct: 1764 LMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRR 1823
Query: 5476 GQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPEL 5655
GQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL
Sbjct: 1824 GQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPEL 1883
Query: 5656 VYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHID 5835
VYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHID
Sbjct: 1884 VYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHID 1943
Query: 5836 KLKTKVKDLFQEQSSDEDI 5892
KLKTKV+DLF EQSSDEDI
Sbjct: 1944 KLKTKVRDLFLEQSSDEDI 1962
>gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1979
Score = 2017 bits (5225), Expect = 0.0
Identities = 1061/2010 (52%), Positives = 1342/2010 (66%), Gaps = 65/2010 (3%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKR--------IYQPAVETLVSHSEFRNSHFAFAMDPFL 213
MAL+SNKTAIE +LGNFEK ++ IY A +T++SHSEFRN HFA++++ +
Sbjct: 1 MALMSNKTAIESILGNFEKKHVRSSSFQQDDAIYNAAAQTILSHSEFRNKHFAYSLNSYQ 60
Query: 214 KKKLSSIGVELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCV-- 387
KK S +G+EL+PNGYLPHSHP SK ENH+L+ VLPSV+N + + CSIKE K+
Sbjct: 61 KKVASKVGIELYPNGYLPHSHPLSKIFENHLLFDVLPSVVNTSRLVMCSIKESKVLVFKN 120
Query: 388 -----------------VARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYR-FS 513
+ + T +N +V +D+SRY E F S D+ FS
Sbjct: 121 IRDRSRKGTSDISTLDSLKNDHTTFINRLVASKDISRYSEEADAF---FQSKRDSPELFS 177
Query: 514 NQAFKTMGKHKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPK 693
K++ +S FFHDEVHHW K +F FL + +R +FT+VYPPE+L + NSQNPK
Sbjct: 178 KNFIKSLQNKESIFFHDEVHHWTKAQMFSFLKSTKVKRFIFTLVYPPEILKKFANSQNPK 237
Query: 694 MYTFKIVRDKLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFE 873
+Y FK+ + +LFFFPDGV +E Y+Q N+ WLF +L GD WT+ RH S YAHHLFE
Sbjct: 238 IYDFKVDKGRLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSVYAHHLFE 297
Query: 874 IVPGKLITEDSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVES 1053
I G+L+T+ +FF+D+ +DM +F +RF+ YD+FP++ H+YKVYSYLLCLKKPD+ES
Sbjct: 298 ISVGELVTDSKIFFSDYSSIDMSKIFLDRFRSYDVFPISIEHLYKVYSYLLCLKKPDLES 357
Query: 1054 GLAKLRQIIGDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVR 1233
GLAKLRQIIGDDVE+KEFLFFEQ CKR IER TS+G+FGHS + L + P+ R
Sbjct: 358 GLAKLRQIIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFQKLTDMALSSLPNGIAR 417
Query: 1234 WTKTWKCSNIFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNE 1413
WK N F+FL+ LGTL + I+R CY H++E + FEVV D + +LDPL F NE
Sbjct: 418 IFPQWKKKNTFEFLFSLGTLVVDIERKVCYEHVLEKWGFEVVITDENAYLDPLSIFAINE 477
Query: 1414 NFNEERVDDGYLERVKLPFFN---YKGDPRKKEVYHFFSKQLHTESHLRALGCATKPPT- 1581
NFNE+RVDDG+LERV+LPF+N Y R+ Y S + + + ++ K P
Sbjct: 478 NFNEDRVDDGFLERVRLPFWNLSDYDLKRRRMNAYDILSSRFEEDRKIESM---QKGPNK 534
Query: 1582 -LRICWR-----TDDPSFINFARA-----VIPSNEMDDKKHHDAYTR----LMSYLVKSG 1716
L+I W DP N + ++ +K+ +Y++ L +YL
Sbjct: 535 MLQIEWYGIKEFEVDPFISNSITKFTLFEALVGKRVNPRKY--SYSKQACTLSNYLTF-- 590
Query: 1717 EMCTSAFISQKFDEFL--RPSEYGCDDGLDGEDAKELEAPTETRSNEFTLDIDSLLLGCP 1890
+C +E L R G D D ++ + TE+ S F +D LL C
Sbjct: 591 -LCAEGLDGFNMEEHLERRLKLIGHDTPDDADEEPDGIEHTESIS-PFFVDPSDLLRECL 648
Query: 1891 PESESSDSQITSELGIDEREAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHG 2070
E+ + SE+ + P P F+ ++Y MFK C HG
Sbjct: 649 EETSTEHVHEVSEVNVPPEREELIIPIDH-------CPKKFE-INYGDMFKPHNCMNMHG 700
Query: 2071 RLINVPADGNCFFHAITEVYQCTEDHVQMRKNFSEWLL--DRDPYHHLGKLIAKDGVFME 2244
I P+DGNCFF A E ++ ++ ++R +FS WL+ D + L K I DGV+ME
Sbjct: 701 DEIPTPSDGNCFFSAFAETFE-VDNPGELRSDFSNWLMVFDGGSFAELAKRIEPDGVYME 759
Query: 2245 HELIYLFALSRGLKIVVHF----EDKIFQFGEGEEEGHIHCDGHHFMAYETY----TFSR 2400
ELIYLF + R + +V+H ++ ++ G EEGH+ G HF+ ETY TFS
Sbjct: 760 AELIYLFCVFREVTLVIHDRSQEKENVYAIHSGFEEGHMVHRGDHFVGIETYRVEDTFSD 819
Query: 2401 MNFKLLDNLEGYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWV 2580
LL +L L KF F P+HF C FRGRKAAFLTKV ADYGHNGM+YP N WV
Sbjct: 820 ---PLLSDLPCGFSEELTKFHFQPDHFNCAQFRGRKAAFLTKVDADYGHNGMIYPHNSWV 876
Query: 2581 PSLDAILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEV 2760
P LD I+++C+ S++N ALI +YE +SLG HRDNE VY D ILTV G IE
Sbjct: 877 PPLDEIIQLCNQGSDFNCALINFYEPNSSLGFHRDNEQVYNDDPILTVCTSGEGIIAIEF 936
Query: 2761 DKRIVEFAMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKK 2940
+ V F M +FF MP GFQK+ARH V+ +RVSITFR H+R ++G I+ +E
Sbjct: 937 KDQTVSFLMTTGTFFLMPKGFQKKARHSVSNKVSRVSITFRKHIRRLNGSPIAIKEE--N 994
Query: 2941 KRNKCLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLE 3120
RN CLI A + ++K S++ + L +AN +W ++ G ++EDC E L V ++
Sbjct: 995 YRNTCLIDAFSKSMKRSKQAIIARLKAANSPFWSRYLSEGNGGTIEDCQSACEALDVTVD 1054
Query: 3121 VHMNDEIKVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS 3300
++++ V+ G I + + NHFS ++ M R+ SHL K N++ ++GL E +
Sbjct: 1055 LNVDGRCLVLGRGALRITMALKENHFSVIQAAQLMERTFVSHLSMKGNINVLEGLHEMLD 1114
Query: 3301 K---CPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNI 3471
N + F AN E+ + L SFL TTG+ LG LDNG K+F L+++ I
Sbjct: 1115 SNVGATGVNKIQFTANFEYARTLANSFLNMTTGICLGRALDNGEKYFRHI--LTDQVRQI 1172
Query: 3472 STELHCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCT 3651
E+ + GFAGSGKS+ +Q WL KK +FCVVSPRT L +DW FKL L + KV T
Sbjct: 1173 GFEVTMVCGFAGSGKSRQLQSWLHSRKKGNFCVVSPRTNLAADWSFKLELEPNEQRKVST 1232
Query: 3652 FESFIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKD 3831
FE FIK ++S L+LIVIDE+TLFPNGY+D L+Y+L ++VLLFDPLQARYHN+ D
Sbjct: 1233 FEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELTNVNRYCQIVLLFDPLQARYHNKMD 1292
Query: 3832 KDILTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGP 4005
+ ILTF HDVDRL+ NINY+Y + R++K +F+RF D+P + + K+WI +
Sbjct: 1293 ESILTFEHDVDRLIGGQNINYIYSTHRMSK-YFNRF-FDVPCFNQANRVEEQKLWIFDDV 1350
Query: 4006 EDIKGSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSN 4182
I +R P DVLLV+S +EK+ ++ + +TFGESQGLTFNH CI+LSES+A+SN
Sbjct: 1351 YSIPSICLDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHACILLSESSAASN 1410
Query: 4183 ELRWNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLI 4362
E RW VA TR++ R S + LGG+++F K L I+ GEK+ A M++ NLI
Sbjct: 1411 EFRWMVAITRSRNRFSLCSTFLGGIEEFKVRRKESLITSILQGEKITFARLNLMLKCNLI 1470
Query: 4363 FKDLVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISE 4542
++ G DE+DREERLEGDPFLKPFIF+GQRI E + + + ++EP CQTHLYI+E
Sbjct: 1471 -RNEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIETHEEKKDEIEVREPTCQTHLYITE 1529
Query: 4543 PNFAQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSH 4722
PNF CYNFD IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS
Sbjct: 1530 PNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSA 1589
Query: 4723 DDEMTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVN 4902
DD+MTFWMAV+KRLVFR E+EN +RLS AHL+GGL+Y NFK+ L+F DQGLLE +N
Sbjct: 1590 DDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYANFKKKMGLEFSFDQGLLEESIN 1649
Query: 4903 DFEVKKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQH 5082
FE KKL+KS TIKSHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQH
Sbjct: 1650 AFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQH 1709
Query: 5083 LILVQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDAC 5262
LILVQFAPWCRYLE QIR QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA
Sbjct: 1710 LILVQFAPWCRYLEAQIRSQLPEEIYIHSNKNFDDLNNWVKKFFQRDICVESDYEAFDAS 1769
Query: 5263 QDEYILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANM 5442
QDEYILSFEIHLMKDA P A+IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANM
Sbjct: 1770 QDEYILSFEIHLMKDAKFPQAIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANM 1829
Query: 5443 AFTMCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRL 5622
AFTMCRYEWRRGQP+AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRL
Sbjct: 1830 AFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRL 1889
Query: 5623 TPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQ 5802
TPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQ
Sbjct: 1890 TPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQ 1949
Query: 5803 AVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5892
AVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1950 AVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1979
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2003 bits (5189), Expect = 0.0
Identities = 1049/2007 (52%), Positives = 1329/2007 (66%), Gaps = 62/2007 (3%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + +Y A +T++SHSEFRN HFA+A+ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL------------- 378
+EL+PNGY+PHSHP SK ENHIL+ VLP V++ K + CSIKE K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 379 -------NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMG 537
A + + +N +V +D+ RY E E FS D FSN + +
Sbjct: 121 GALGFCGKDTSASDHTSFINRLVASKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCIS 179
Query: 538 KHKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR 717
++ FFHDEVHHW K +F FL R + RR +FT+VYPPELL + NSQNPK+Y FK+ +
Sbjct: 180 NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239
Query: 718 DKLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLIT 897
+LFFFPDGV +E Y+Q N+ WLF + GD+ WT+ RH S Y+HHLFE+ G+LI+
Sbjct: 240 GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299
Query: 898 EDSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQI 1077
+ +FF+D+ +DM +F +RF+ Y++FP+ H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300 DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359
Query: 1078 IGDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCS 1257
IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S + L + P++ R WK
Sbjct: 360 IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419
Query: 1258 NIFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVD 1437
N F+FL+ LGTL ++I+R C+ HI+E + FEVV D + +LDPL F NENFNEERVD
Sbjct: 420 NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479
Query: 1438 DGYLERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW-- 1596
DGYL+RVKLPF+N K DP++ + + + ++ LR G L+I W
Sbjct: 480 DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYG 536
Query: 1597 --RTDDPSFINFARAVIPSNEMDDKKHH----------DAYTRLMSYL--VKSGEMCTSA 1734
DDP N + K+ H D + +S++ + G
Sbjct: 537 IREFDDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEF 596
Query: 1735 FISQKFDEFLRPSEYGCDDGLDGEDAKELEAPTETRSNEFTLDIDSLLLGCPPESESSDS 1914
+ ++ R +GL G+ E + + I L+ P S+ +S
Sbjct: 597 VLERRLQSAGRDPIESESEGL-GKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGES 655
Query: 1915 QITSELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLI 2079
Q ++L ++ +E + T EG+ I ++D+S +F+ C +HG I
Sbjct: 656 QHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEI 712
Query: 2080 NVPADGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHEL 2253
P DGNCFF A + C D +R NF++WL D Y +G I +GVFME EL
Sbjct: 713 PTPMDGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAEL 771
Query: 2254 IYLFALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLD 2421
IYLF + R + +++H + +F G EEGH+ G HF+ ETY F
Sbjct: 772 IYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDP 829
Query: 2422 NLE----GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSL 2589
NL GY + L F F PEHF C FRGRK AFLTKV ADYGHNGM+YP N WVPSL
Sbjct: 830 NLSELPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSL 888
Query: 2590 DAILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKR 2769
D I+ ICD ++N ALI +Y +SLG HRDNE VY D ILTV +G F IE ++
Sbjct: 889 DEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQ 948
Query: 2770 IVEFAMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRN 2949
F M SFF MP GFQ++ARH V RVSITFR H+R + G I+ ++ RN
Sbjct: 949 TASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRN 1006
Query: 2950 KCLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHM 3129
CLI A++ AL + + L + N +W F+ G S+EDC E L + +++ +
Sbjct: 1007 VCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFV 1066
Query: 3130 NDEIKVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK-- 3303
+ + V+ G + + + NHFS + E ++ R+ SHL KK+N+ + GL E +
Sbjct: 1067 DGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEM 1126
Query: 3304 CPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTE 3480
N + F A+ E ++L SFL TTG+ L LDNG K+F +SEE I +
Sbjct: 1127 STGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFD 1183
Query: 3481 LHCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFES 3660
+ + GFAGSGKS+ +Q WL K+ +FCVVSPR L +DW FKL L + KV TFES
Sbjct: 1184 VTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFES 1243
Query: 3661 FIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDI 3840
FIK ++S L++IV+DE+TLFPNGY+D LIY+L S ++LLFDPLQARYHN+ D+ +
Sbjct: 1244 FIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAV 1303
Query: 3841 LTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDI 4014
L F HDVDRL+ ++ Y+Y S R++K +F+RF D+P + E+ + ++WI++ I
Sbjct: 1304 LNFEHDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSI 1361
Query: 4015 KGSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELR 4191
++ P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE R
Sbjct: 1362 TSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFR 1421
Query: 4192 WNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKD 4371
W VA TRAK R+SF + LGG+D+F L I+ G+++ MV+ NLI K
Sbjct: 1422 WMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQ 1480
Query: 4372 LVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNF 4551
G DE+DREERLEGDPFLKPFIF+G RI + E + ++EP CQTHLYI+EPNF
Sbjct: 1481 EKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNF 1540
Query: 4552 AQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDE 4731
CYNFD IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+
Sbjct: 1541 GLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDD 1600
Query: 4732 MTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFE 4911
MTFWMAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK L+F DQGL E VN FE
Sbjct: 1601 MTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFE 1660
Query: 4912 VKKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLIL 5091
KKL+KS TIKSHSIRS+VDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLIL
Sbjct: 1661 KKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 1720
Query: 5092 VQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDE 5271
VQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN W K FF +DICVESDYEAFDACQDE
Sbjct: 1721 VQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDE 1780
Query: 5272 YILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFT 5451
YILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT
Sbjct: 1781 YILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFT 1840
Query: 5452 MCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPY 5631
+CRYEWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPY
Sbjct: 1841 LCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPY 1900
Query: 5632 GIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVV 5811
GIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVV
Sbjct: 1901 GIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVV 1960
Query: 5812 RFIVTHIDKLKTKVKDLFQEQSSDEDI 5892
RFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1961 RFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2000 bits (5181), Expect = 0.0
Identities = 1054/2006 (52%), Positives = 1331/2006 (66%), Gaps = 61/2006 (3%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + +Y A +T++SHSEFRN HFA+A+ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL------------- 378
+EL+PNGY+PHSHP SK ENHIL+ VLP V++ K + CSIKE K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 379 -------NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMG 537
A + + +N +V +D+ RY E E FS D FSN + +
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCIS 179
Query: 538 KHKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR 717
++ FFHDEVHHW K +F FL R + RR +FT+VYPPELL + NSQNPK+Y FK+ +
Sbjct: 180 NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239
Query: 718 DKLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLIT 897
+LFFFPDGV +E Y+Q N+ WLF + GD+ WT+ RH S Y+HHLFE+ G+LI+
Sbjct: 240 GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299
Query: 898 EDSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQI 1077
+ +FF+D+ +DM +F +RF+ Y++FP+ H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300 DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359
Query: 1078 IGDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCS 1257
IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S + L + P++ R WK
Sbjct: 360 IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419
Query: 1258 NIFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVD 1437
N F+FL+ LGTL ++I+R C+ HI+E + FEVV D + +LDPL F NENFNEERVD
Sbjct: 420 NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479
Query: 1438 DGYLERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW-- 1596
DGYL+RVKLPF+N K DP++ + + + ++ LR G L+I W
Sbjct: 480 DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYG 536
Query: 1597 --RTDDPSFINFARAVIPSNEMDDKKHHD---AYTRLMSYLVKSGEMCTSAFISQKFDEF 1761
DDP N + K+ H +Y++ L K + EF
Sbjct: 537 IREFDDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEF 596
Query: 1762 L---RPSEYGCD---DGLDGEDAKELEAPTETRSNEFTLD--IDSLLLGCPPESESSDSQ 1917
+ R G D L+G K E+ E + L+ I L+ P S+ +SQ
Sbjct: 597 VLERRLQSAGRDPIESELEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQ 656
Query: 1918 ITSELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLIN 2082
++L ++ +E + T EG+ I ++D+S +F+ C +HG I
Sbjct: 657 HRADLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIP 713
Query: 2083 VPADGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELI 2256
P DGNCFF A + C D +R NF++WL D Y +G I +GVFME ELI
Sbjct: 714 TPMDGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELI 772
Query: 2257 YLFALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDN 2424
YLF + R + +++H + +F G EEGH+ G HF+ ETY F N
Sbjct: 773 YLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPN 830
Query: 2425 LE----GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLD 2592
L GY + L F F PEHF C FRGRK AFLTKV ADYGHNGM+YP N WVPSLD
Sbjct: 831 LSELPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLD 889
Query: 2593 AILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRI 2772
I+ ICD ++N ALI +Y +SLG HRDNE VY D ILTV +G F IE ++
Sbjct: 890 EIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQT 949
Query: 2773 VEFAMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNK 2952
F M SFF MP GFQ++ARH V RVSITFR H+R + G I+ ++ RN
Sbjct: 950 ASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNV 1007
Query: 2953 CLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMN 3132
CLI A++ AL + + L + N +W F+ G S+EDC E L + +++ ++
Sbjct: 1008 CLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVD 1067
Query: 3133 DEIKVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--C 3306
+ V+ G + + + NHFS + E ++ R+ SHL KK+N+ + GL E +
Sbjct: 1068 GKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMS 1127
Query: 3307 PHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTEL 3483
N + F A+ E ++L SFL TTG+ L LDNG K+F +SEE I ++
Sbjct: 1128 TGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDV 1184
Query: 3484 HCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESF 3663
+ GFAGSGKS+ +Q WL K+ +FCVVSPR L +DW FKL L + KV TFESF
Sbjct: 1185 TAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESF 1244
Query: 3664 IKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDIL 3843
IK ++S L++IV+DE+TLFPNGY+D LIY+L S ++LLFDPLQARYHN+ D+ +L
Sbjct: 1245 IKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVL 1304
Query: 3844 TFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIK 4017
F HDVDRL+ ++ Y+Y S R++K +F+RF D+P + E+ + ++WI++ I
Sbjct: 1305 NFEHDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSIT 1362
Query: 4018 GSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRW 4194
++ P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW
Sbjct: 1363 SVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRW 1422
Query: 4195 NVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDL 4374
VA TRAK R+SF + LGG+D+F L I+ G+++ MV+ NLI K
Sbjct: 1423 MVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQE 1481
Query: 4375 VMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFA 4554
G DE+DREERLEGDPFLKPFIF+G RI + E + ++EP CQTHLYI+EPNF
Sbjct: 1482 KKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFG 1541
Query: 4555 QCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEM 4734
CYNFD IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+M
Sbjct: 1542 LCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDM 1601
Query: 4735 TFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEV 4914
TFWMAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK L+F DQGL E VN FE
Sbjct: 1602 TFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEK 1661
Query: 4915 KKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILV 5094
KKL+KS TIKSHSIRS+VDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILV
Sbjct: 1662 KKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 1721
Query: 5095 QFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEY 5274
QFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN W K FF +DICVESDYEAFD CQDEY
Sbjct: 1722 QFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEY 1781
Query: 5275 ILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTM 5454
ILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+
Sbjct: 1782 ILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTL 1841
Query: 5455 CRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYG 5634
CRYEWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYG
Sbjct: 1842 CRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYG 1901
Query: 5635 IVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVR 5814
IVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVR
Sbjct: 1902 IVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVR 1961
Query: 5815 FIVTHIDKLKTKVKDLFQEQSSDEDI 5892
FIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1962 FIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1999 bits (5180), Expect = 0.0
Identities = 1048/2007 (52%), Positives = 1328/2007 (66%), Gaps = 62/2007 (3%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + +Y A +T++SHSEFRN HFA+A+ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL------------- 378
+EL+PNGY+PHSHP SK ENHIL+ VLP V++ K + CSIKE K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 379 -------NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMG 537
A + + +N +V +D+ RY E E FS D FSN + +
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCIS 179
Query: 538 KHKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR 717
++ FFHDEVHHW K +F FL R + RR +FT+VYPPELL + NSQNPK+Y FK+ +
Sbjct: 180 NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239
Query: 718 DKLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLIT 897
+LFFFPDGV +E Y+Q N+ WLF + GD+ WT+ RH S Y+HHLFE+ G+LI+
Sbjct: 240 GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299
Query: 898 EDSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQI 1077
+ +FF+D+ +DM +F +RF+ Y++FP+ H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300 DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359
Query: 1078 IGDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCS 1257
IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S + L + P++ R WK
Sbjct: 360 IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419
Query: 1258 NIFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVD 1437
N F+FL+ LGTL ++I+R C+ HI+E + FEVV D + +LDPL F NENFNEERVD
Sbjct: 420 NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479
Query: 1438 DGYLERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW-- 1596
DGYL+RVKLPF+N K DP++ + + + ++ LR G L+I W
Sbjct: 480 DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYG 536
Query: 1597 --RTDDPSFINFARAVIPSNEMDDKKHH----------DAYTRLMSYL--VKSGEMCTSA 1734
DDP N + K+ H D + +S++ + G
Sbjct: 537 IREFDDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEF 596
Query: 1735 FISQKFDEFLRPSEYGCDDGLDGEDAKELEAPTETRSNEFTLDIDSLLLGCPPESESSDS 1914
+ ++ R +GL G+ E + + I L+ P S+ +S
Sbjct: 597 VLERRLQSAGRDPIESESEGL-GKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGES 655
Query: 1915 QITSELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLI 2079
Q ++L ++ +E + T EG+ I ++D+S +F+ C +HG I
Sbjct: 656 QHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEI 712
Query: 2080 NVPADGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHEL 2253
P DGNCFF A + C D +R NF++WL D Y +G I +GVFME EL
Sbjct: 713 PTPMDGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAEL 771
Query: 2254 IYLFALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLD 2421
IYLF + R + +++H + +F G EEGH+ G HF+ ETY F
Sbjct: 772 IYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDP 829
Query: 2422 NLE----GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSL 2589
NL GY + L F F PEHF C FRGRK AFLTKV ADYGHNGM+YP N WVPSL
Sbjct: 830 NLSELPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSL 888
Query: 2590 DAILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKR 2769
D I+ ICD ++N ALI +Y +SLG HRDNE VY D ILTV +G F IE ++
Sbjct: 889 DEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQ 948
Query: 2770 IVEFAMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRN 2949
F M SFF MP GFQ++ARH V RVSITFR H+R + G I+ ++ RN
Sbjct: 949 TASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRN 1006
Query: 2950 KCLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHM 3129
CLI A++ AL + + L + N +W F+ G S+EDC E L + +++ +
Sbjct: 1007 VCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFV 1066
Query: 3130 NDEIKVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK-- 3303
+ + V+ G + + + NHFS + E ++ R+ SHL KK+N+ + GL E +
Sbjct: 1067 DGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEM 1126
Query: 3304 CPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTE 3480
N + F A+ E ++L SFL TTG+ L LDNG K+F +SEE I +
Sbjct: 1127 STGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFD 1183
Query: 3481 LHCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFES 3660
+ + GFAGSGKS+ +Q WL K+ +FCVVSPR L +DW FKL L + KV TFES
Sbjct: 1184 VTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFES 1243
Query: 3661 FIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDI 3840
FIK ++S L++IV+DE+TLFPNGY+D LIY+L S ++LLFDPLQARYHN+ D+ +
Sbjct: 1244 FIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAV 1303
Query: 3841 LTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDI 4014
L F HDVDRL+ ++ Y+Y S R++K +F+RF D+P + E+ + ++WI++ I
Sbjct: 1304 LNFEHDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSI 1361
Query: 4015 KGSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELR 4191
++ P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE R
Sbjct: 1362 TSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFR 1421
Query: 4192 WNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKD 4371
W VA TRAK R+SF + LGG+D+F L I+ G+++ MV+ NLI K
Sbjct: 1422 WMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLI-KQ 1480
Query: 4372 LVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNF 4551
G DE+DREERLEGDPFLKPFIF+GQRI + E + ++EP CQTHLYI+EPNF
Sbjct: 1481 EKKNGCSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNF 1540
Query: 4552 AQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDE 4731
CYNFD IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+
Sbjct: 1541 GLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDD 1600
Query: 4732 MTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFE 4911
MTFWMAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK L+F DQGL E VN FE
Sbjct: 1601 MTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFE 1660
Query: 4912 VKKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLIL 5091
KKL+KS TIKSHSIRS+VDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLIL
Sbjct: 1661 KKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 1720
Query: 5092 VQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDE 5271
VQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL W K FF +DICVESDYEAFD CQDE
Sbjct: 1721 VQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDE 1780
Query: 5272 YILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFT 5451
YILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT
Sbjct: 1781 YILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFT 1840
Query: 5452 MCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPY 5631
+CRYEWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPY
Sbjct: 1841 LCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPY 1900
Query: 5632 GIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVV 5811
GIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVV
Sbjct: 1901 GIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVV 1960
Query: 5812 RFIVTHIDKLKTKVKDLFQEQSSDEDI 5892
RFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1961 RFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1997 bits (5173), Expect = 0.0
Identities = 1053/2006 (52%), Positives = 1330/2006 (66%), Gaps = 61/2006 (3%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MAL+SNKTAIE +LGNFEK + +Y A +T++SHSEFRN HFA+A+ + KK S +G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL------------- 378
+EL+PNGY+PHSHP SK ENHIL+ VLP V++ K + CSIKE K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 379 -------NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMG 537
A + + +N +V +D+ RY E E FS D FSN + +
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCIS 179
Query: 538 KHKSFFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR 717
++ FFHDEVHHW K +F FL R + RR +FT+VYPPELL + NSQNPK+Y FK+ +
Sbjct: 180 NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239
Query: 718 DKLFFFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLIT 897
+LFFFPDGV +E Y+Q N+ WLF + GD+ WT+ RH S Y+HHLFE+ G+LI+
Sbjct: 240 GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299
Query: 898 EDSLFFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQI 1077
+ +FF+D+ +DM +F +RF+ Y++FP+ H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300 DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359
Query: 1078 IGDDVEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCS 1257
IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S + L + P++ R WK
Sbjct: 360 IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419
Query: 1258 NIFDFLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVD 1437
N F+FL+ LGTL ++I+R C+ HI+E + FEVV D + +LDPL F NENFNEERVD
Sbjct: 420 NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479
Query: 1438 DGYLERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW-- 1596
DGYL+RVKLPF+N K DP++ + + + ++ LR G L+I W
Sbjct: 480 DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYG 536
Query: 1597 --RTDDPSFINFARAVIPSNEMDDKKHHD---AYTRLMSYLVKSGEMCTSAFISQKFDEF 1761
DDP N + K+ H +Y++ L K + EF
Sbjct: 537 IREFDDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEF 596
Query: 1762 L---RPSEYGCD---DGLDGEDAKELEAPTETRSNEFTLD--IDSLLLGCPPESESSDSQ 1917
+ R G D L+G K E+ E + L+ I L+ P S+ +SQ
Sbjct: 597 VLERRLQSAGRDPIESELEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQ 656
Query: 1918 ITSELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLIN 2082
++L ++ +E + T EG+ I ++D+S +F+ C +HG I
Sbjct: 657 HRADLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIP 713
Query: 2083 VPADGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELI 2256
P DGNCFF A + C D +R NF++WL D Y +G I +GVFME ELI
Sbjct: 714 TPMDGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELI 772
Query: 2257 YLFALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDN 2424
YLF + R + +++H + +F G EEGH+ G HF+ ETY F N
Sbjct: 773 YLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPN 830
Query: 2425 LE----GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLD 2592
L GY + L F F PEHF C FRGRK AFLTKV ADYGHNGM+YP N WVPSLD
Sbjct: 831 LSELPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLD 889
Query: 2593 AILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRI 2772
I+ ICD ++N ALI +Y +SLG HRDNE VY D ILTV +G F IE ++
Sbjct: 890 EIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQT 949
Query: 2773 VEFAMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNK 2952
F M SFF MP GFQ++ARH V RVSITFR H+R + G I+ ++ RN
Sbjct: 950 ASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNV 1007
Query: 2953 CLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMN 3132
CLI A++ AL + + L + N +W F+ G S+EDC E L + +++ ++
Sbjct: 1008 CLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVD 1067
Query: 3133 DEIKVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--C 3306
+ V+ G + + + NHFS + E ++ R+ SHL KK+N+ + GL E +
Sbjct: 1068 GKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMS 1127
Query: 3307 PHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTEL 3483
N + F A+ E ++L SFL TTG+ L LDNG K+F +SEE I ++
Sbjct: 1128 TGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDV 1184
Query: 3484 HCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESF 3663
+ GFAGSGKS+ +Q WL K+ +FCVVSPR L +DW FKL L + KV TFESF
Sbjct: 1185 TAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESF 1244
Query: 3664 IKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDIL 3843
IK ++S L++IV+DE+TLFPNGY+D LIY+L S ++LLFDPLQARYHN+ D+ +L
Sbjct: 1245 IKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVL 1304
Query: 3844 TFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIK 4017
F HDVDRL+ ++ Y+Y S R++K +F+RF D+P + E+ + ++WI++ I
Sbjct: 1305 NFEHDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSIT 1362
Query: 4018 GSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRW 4194
++ P DVLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW
Sbjct: 1363 SVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRW 1422
Query: 4195 NVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDL 4374
VA TRAK R+SF + LGG+D+F L I+ G+++ MV+ NLI K
Sbjct: 1423 MVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQE 1481
Query: 4375 VMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFA 4554
G DE+DREERLEGDPFLKPFIF+G RI + E + ++EP CQTHLYI+EPNF
Sbjct: 1482 KKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFG 1541
Query: 4555 QCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEM 4734
CYNFD IR KE+REYREDMLVT+QFCD+Y+K T GPLRFKAIYPKHS DD+M
Sbjct: 1542 LCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDM 1601
Query: 4735 TFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEV 4914
TFWMAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK L+F DQGL E VN FE
Sbjct: 1602 TFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEK 1661
Query: 4915 KKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILV 5094
KKL+KS TIKSHSIRS+VDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILV
Sbjct: 1662 KKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 1721
Query: 5095 QFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEY 5274
QFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL W K FF +DICVESDYEAFD CQDEY
Sbjct: 1722 QFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEY 1781
Query: 5275 ILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTM 5454
ILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+
Sbjct: 1782 ILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTL 1841
Query: 5455 CRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYG 5634
CRYEWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYG
Sbjct: 1842 CRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYG 1901
Query: 5635 IVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVR 5814
IVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVR
Sbjct: 1902 IVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVR 1961
Query: 5815 FIVTHIDKLKTKVKDLFQEQSSDEDI 5892
FIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1962 FIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AKN09002.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 1241 bits (3211), Expect = 0.0
Identities = 792/2081 (38%), Positives = 1113/2081 (53%), Gaps = 139/2081 (6%)
Frame = +1
Query: 64 LLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIGVE 243
+L+ K+ E N E I A ++L + HFA+ + LK+KLSS+GV
Sbjct: 4 ILNYKSPSEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63
Query: 244 LFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVVARQNITLL--- 414
L P YL HSHPFSK LENHIL VLP I ++F SIK K+ + + ++L
Sbjct: 64 LHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLRTV 122
Query: 415 NEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHWGKKNL 594
N ++ +D RY +V+ S + + + + F K ++ HDEVHHW ++
Sbjct: 123 NRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDM 181
Query: 595 FKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR-DKLFFFPDGVSSEGYQQP 771
FL+R +P R VF+VVYP ELL G SQNPKMY F+ + DK+ FFPDG +SEGY+Q
Sbjct: 182 LGFLDRARPNRFVFSVVYPVELLAGIPESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQR 241
Query: 772 ANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVDMHHMF 951
ANL WLF + WT+ R S Y+HHLFE+VPG T++ FFNDF+ +D+ +F
Sbjct: 242 ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 301
Query: 952 KNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 1131
K+RF D P++ V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+ +FF L
Sbjct: 302 KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 361
Query: 1132 RFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLGTLCIQIDR 1311
R + + +F S++ KF+ F PD + TWK N FDFL L L +++
Sbjct: 362 RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV-- 419
Query: 1312 GTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLERVKLPFFNYKGDP 1491
P E+V DS+ + + FD + + + V G+ +R +P +
Sbjct: 420 -----------PTEIV--DSTFERNFISLFDVDPHVSAPLVIKGF-KRFMMPHSEVEKRV 465
Query: 1492 RKKEVYH---FFSKQLHTESHLR-ALGCATKPPTLRICWRTDDPSFINFARAVIPSNEMD 1659
+ E H F + + H + A+ A+ R++ + ++ +I +
Sbjct: 466 NRDEASHKVTIFRRPSSSSPHCKYAIELASIA-------RSESSNCMSGGVMMIT---LP 515
Query: 1660 DKKHHDA------YTRLMSYLVKSGEMCTSAFISQKFDEFLR------------------ 1767
+H + Y L YL +GE + +I++ +FL
Sbjct: 516 KDRHIELLLEGCNYCLLHEYL-NTGESFSENYINRMLADFLEDLEIIGKDCFQLSINGVR 574
Query: 1768 ---PSEYGCD-----------------DGLDGEDAKELEAPTETRSNEFTLDI--DSLLL 1881
P G D L E+ L+ + D+ D L
Sbjct: 575 SLPPEHVGSDVSWKRYKLVESALERLFGDLLNEELSFLQVEPSVPDRGYVADVLPDPLFP 634
Query: 1882 GCPPESES-----SDSQITSELG-IDEREAVSQSPTQKGMEGNG-------PI--PSNFQ 2016
C P S++ SEL +D E SP + G PI P N
Sbjct: 635 ACIPVSDTVRNGGEGPTAVSELALVDPLETSVVSPISDTVGGTTFNSFPDFPIIPPINLA 694
Query: 2017 KLDYSKMFKEVECH--ASHGRLINVPADGNCFFHAITEVYQCTEDHVQMRKNFSEWLLDR 2190
L+ + ++ V C + ++I ADG CFFH + + F ++ +
Sbjct: 695 LLENT--YRPVTCSKIGNSFQIIRASADGRCFFHTLLSTSLFGGSVNNLVNTFCNFIKNL 752
Query: 2191 DPYHHLGKLIAKDGVFMEHELIYLFALSRGLKIVVH---FEDKIFQFGEG-------EEE 2340
+ H ++G + E +I LF + G+++ H + + G G + E
Sbjct: 753 N--EHEAARQVQEGAYPEGWMINLFLANYGIRMCCHQHSADGVTIETGSGPISFCSLKME 810
Query: 2341 GH---IHCDGHHFMAYETYTFSRMNFK---LLDNLEGYHDIRLEKFSFAPEHFVCHSFRG 2502
H + C T + + +++ L+G SFRG
Sbjct: 811 NHFDYLRCLSSGVSKEHTGLLGKTTYPSGPIINALQGLKP---------------KSFRG 855
Query: 2503 RKAAFLTKVGA-DYGHNGMLYPVNDWVPSLDAILEICDPDSNYNSALIQWYEEGASLGLH 2679
R + F + DYGHNG Y +W LD + D +N+ L+Q Y++G+ +G H
Sbjct: 856 RSSFFFARSNEIDYGHNGFKYRTENWFAELD---DFIPSDLIFNACLVQVYDKGSKIGFH 912
Query: 2680 RDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFFTMPSGFQKRARHGVTA-T 2856
+DNE Y ILTVN G F + + F + D + + K+ RH VT+ +
Sbjct: 913 KDNEQCYAGYPILTVNF-GLALFEFDSGEA---FNLTDGDTILLSGDYLKKKRHRVTSLS 968
Query: 2857 KNRVSITFRTHVRMMSGKAISE-SKELKKKRNKCLIVAVAGALKSSEEKVCQALISANKS 3033
NR+S+TFR HV M+ + S + K +NKC+I AVA AL + V ++ A +
Sbjct: 969 DNRISLTFRRHVCRMNKSPLEFFSNDGKLGKNKCIIHAVAMALGQTSNTVANKIV-AQRP 1027
Query: 3034 YWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFG-QTVIKIKFEA--NHFSA 3204
L + D + + + ++ + DE + M+ + +IK F H
Sbjct: 1028 DLLQCLVDDEMLDKQTTEAICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDEHMMV 1087
Query: 3205 LREFINMPRSSFSHLQKKANVSAVKGLVEKISKCPHYNLLPFNANGEFFQMLRKSFLQRT 3384
L + N + +++ V C + ++ + A+ E L SFL T
Sbjct: 1088 LSDVPNCMSKKGIDICMSPDLANSNCAVNYEVTCQNLQVIQYQADHERAIKLMNSFLAGT 1147
Query: 3385 TGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGKSKVMQD---------W 3537
TG VL E++ G++FF ++E S+ EL + GFAGSGKS + +
Sbjct: 1148 TGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRISREIH 1207
Query: 3538 LGKVKK--------------------SSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFE 3657
L K KK S C++SPR L DW KLG S + V TFE
Sbjct: 1208 LAKEKKRMGKGDGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSVTTFE 1267
Query: 3658 SFIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKD 3837
F K S ++LIV+DE+TLFPNGYID LI+ ++ +++L+FDPLQARY + +D+
Sbjct: 1268 VFFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPNCKLILIFDPLQARYDSAQDRA 1327
Query: 3838 ILTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVNGPEDIK 4017
IL HDVD ++ D ++Y+Y S R + FN+ ++R+E D++ E K
Sbjct: 1328 ILGSEHDVDLILGDSEVDYMYQSKRFESE--ELFNL-FEDLKRNEVDAE-----SQETGK 1379
Query: 4018 GS-FGERPFP----------------DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHV 4146
G+ F R + DVLLV S E ++ I+T+TFGESQGLT +H
Sbjct: 1380 GAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHA 1439
Query: 4147 CIVLSESTASSNELRWNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDH 4326
I+LSE++A S++ RW VA TRA+++V+FL HL GL+ FL+ + L ++N +
Sbjct: 1440 AILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLITK 1499
Query: 4327 AFYRKMVRSNLIFKDLVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQ 4506
MVR+ L + DE+DRE+RLEGD FLK IF+GQR E E I
Sbjct: 1500 KRLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVIA 1559
Query: 4507 EPRCQTHLYISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGP 4686
+ +TH ++ + NFAQCYNFD IR KE RE+R VT+QF DNY T GP
Sbjct: 1560 KEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKHTAGP 1619
Query: 4687 LRFKAIYPKHSHDDEMTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKF 4866
LRF+AIYP+H DD++TF MAV KRL F +E + R +L AH G +++ N + L F
Sbjct: 1620 LRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNF 1679
Query: 4867 VHDQGLLERCVNDFEVKKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVD 5046
D L E CVNDFE KKL+KS+A + +HSIRS+ DW+ N VFLFMKSQLCTK+EKQ+VD
Sbjct: 1680 TWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVD 1739
Query: 5047 AKAGQTLACFQHLILVQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDI 5226
AKAGQTLACFQH+ILV FAP+CRY+E+Q+R QLP EIYIHSNKNF+DLNEW KK+ D+
Sbjct: 1740 AKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDL 1799
Query: 5227 CVESDYEAFDACQDEYILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGE 5406
CVESDYEAFDA QD+YILSFE+ +M+ +P+ +I AYIDLK L CKLGHFA+MRFTGE
Sbjct: 1800 CVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGE 1859
Query: 5407 FCTFLFNTLANMAFTMCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVE 5586
F TFLFNTLANMAFTM RYEW G P+AFAGDDMCAL NL + F VF++ISLKAK +
Sbjct: 1860 FSTFLFNTLANMAFTMRRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQ 1919
Query: 5587 RTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYE 5766
TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAY+L ERL++
Sbjct: 1920 ITEVPMFCGWRLSKFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFD 1979
Query: 5767 VLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDED 5889
+LK E Q++YHQAVVRFIV H+ L+TKVKDLF EQ SDED
Sbjct: 1980 ILKREEQLEYHQAVVRFIVKHLGDLRTKVKDLFAEQ-SDED 2019
>gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus]
Length = 2002
Score = 1073 bits (2776), Expect = 0.0
Identities = 585/1325 (44%), Positives = 825/1325 (62%), Gaps = 57/1325 (4%)
Frame = +1
Query: 2071 RLINVPADGNCFFHAIT-------EVYQCTEDHVQMRKNFSEWL-LDRDPYHHLGKLIAK 2226
R+ V DGNCF+ A+ Y T + + S + L+ D H L
Sbjct: 694 RIAKVVGDGNCFYRALRLCLGHGEHEYNVTREKLHKSALSSTFFRLEDDILHEL----IT 749
Query: 2227 DGVFMEHELIYLFALSRGLKIVVHFEDKIFQFG-------EGEEEG----HIHCDGHHF- 2370
DGV+ EL+ +++ + ++++ F + E E H+H + HF
Sbjct: 750 DGVYTSDELVKFIVNLANIELRISTQNQLNHFSSYKPLIAKYENEPVCVVHMHLENEHFD 809
Query: 2371 ---MAYETYTFSRMNFKLLDNLEGYHDIRLEKFSFAPEHFVCHSFRGRKAAF-LTKVGAD 2538
A++ + + + L+ + LEK +F +++ +GRKA F + + D
Sbjct: 810 AVLYAHDEDGYDQEEEGGVIELKRGNFEDLEKLNF--QNYKPTKLKGRKAFFFVNNLDID 867
Query: 2539 YGHNGMLYPVNDWVPSLDAILEICDPD--SNYNSALIQWYEEGASLGLHRDNEVVYGDTS 2712
YGH+ + Y N L I IC D + YN+ L+Q +EEG ++ +HRD+E+ Y D S
Sbjct: 868 YGHDKVRYKSN-----LYDIESICPKDLYNGYNACLVQIFEEGGNIPMHRDDEICYDDES 922
Query: 2713 ILTVNLKGSCNFRIEVDKRIVEFAMEDASFFTMPSGFQKRARHGV-TATKNRVSITFRTH 2889
IL++NLKGS F + M ++S+ M FQK+ +H V + R+++TFR H
Sbjct: 923 ILSINLKGSATFSYSDGNVTKDIRMMESSYIVMDGPFQKKFKHSVKNCSSGRINVTFRRH 982
Query: 2890 VRMMSGKAISE-SKELKKKRNKCLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAG 3066
+R M+ + + + +KE+K +N+C+I A+A S V AL+ ++ +W + ++D G
Sbjct: 983 IRRMNMEPLVDINKEIKAMKNRCMIDAIADNEGRSIPVVMNALLKKDRIFWDEWRKNDNG 1042
Query: 3067 ASLEDCNELAECLKVNLEVHMNDEIKVMDFGQTVIKIKFEANHFSALR-EFINMPRSSFS 3243
++ D + A L + EV D +K ++ + + + HF + E I +
Sbjct: 1043 GTISDLIKAANDLAFSFEVDTMDGVKTLNNKGPLFTFELKDGHFRKSKIEKIGKVMTELE 1102
Query: 3244 HLQKKANVSAVKG--LVEKISKCPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDN 3417
+ K G +VE +S P +N L F + E+ + SF R TG+ L ++ N
Sbjct: 1103 RREMKRETEGSFGDKVVELVSNSPGFNKLTFEVDVEYVMKIVHSFKNRMTGIALSDIYSN 1162
Query: 3418 GAKFFERSFKLSEECSNIST----------------------ELHCMIGFAGSGKSKVMQ 3531
G F ++ EE S I+ EL+C+IG GSGKS +Q
Sbjct: 1163 GESIFG---EVIEEISRINKSSCSDKKKKDGSYESEHMTRKIELNCVIGLGGSGKSNSLQ 1219
Query: 3532 DWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELIVIDEV 3711
+L K K F V+SPR L SDWI K+G + NKV TFE+ ++ ++E+I++DE+
Sbjct: 1220 SFLKKNVKGKFLVISPRLNLASDWISKVGCNP---NKVRTFETALRTNLKSIEVIIVDEL 1276
Query: 3712 TLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVNDMNIN 3891
TLFPNGY+D L+ L + ++V +FD Q+RYH+E D +IL HDVDR+V + I+
Sbjct: 1277 TLFPNGYLDLLMCMLGKEVKRKKIVCIFDIYQSRYHSESDTNILGQVHDVDRIVKNKEIS 1336
Query: 3892 YLYGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVN---GPEDIKGSFGERPFPDVLLVD 4062
YL+ S+R NFFD F D+ + ++ E ++ + + + I+ G + D +LV
Sbjct: 1337 YLHQSYRFISNFFDSFFKDVTINKKVEEKFEVRVYDCHLKAQIIEEEKGRKI--DAILVA 1394
Query: 4063 SQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERVSFLVS 4242
S+ EK + ++ +TFGESQGL+FN V IVLSE++ +E RW VA TRA+ + F+V
Sbjct: 1395 SRDEKNALSGKVEVMTFGESQGLSFNRVAIVLSENSEKQDEYRWMVALTRARISICFIVI 1454
Query: 4243 HLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKM-VRSNLIFKDLVMGGAIDEMDREERL 4419
+ GGL FL NC +L + G++ R M V + FK ++GG DE+DREERL
Sbjct: 1455 YRGGLSVFLQNCGNKLIGAFIKGQECSLRRLRMMSVAKEITFKKEMIGGKSDEVDREERL 1514
Query: 4420 EGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDLIRLKEERE 4599
EGDPFLKPFIF+G RIN +E E V I EP+ ++H+ I++ NFA NFDLIR KE RE
Sbjct: 1515 EGDPFLKPFIFLGMRINSEEPEMCEVEIVEPKGKSHICIAQENFALSRNFDLIRSKELRE 1574
Query: 4600 YREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLVFRSE 4779
YR T+QFCDNY + G + T GPLRF++IYP+H +D++TFWMAV KRL F +E
Sbjct: 1575 YRFRESTTNQFCDNYERVGTGASKHTAGPLRFESIYPRHQSNDDLTFWMAVHKRLKFSNE 1634
Query: 4780 DENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIKSHSI 4959
+ R +L ++ ++G L+Y N K +L F HD GLL +C+NDFEVKKL KS+ATI +HSI
Sbjct: 1635 AKERAKLKESSMVGQLLYYNLKEKLNLSFSHDPGLLSQCINDFEVKKLSKSKATIANHSI 1694
Query: 4960 RSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQQIRD 5139
RS++DW +N +FLFMKSQLCTK+EKQ+ DAKAGQTLACFQH++LV+FAP+CRY+E IR
Sbjct: 1695 RSDMDWPMNQIFLFMKSQLCTKYEKQYCDAKAGQTLACFQHMVLVKFAPYCRYMEAMIRS 1754
Query: 5140 QLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLP 5319
+LP+EIYIHSNKNF++LN+W K F + CVESDYEAFDA QDEYI+SFEI +M+D G+P
Sbjct: 1755 RLPDEIYIHSNKNFNELNDWVVKHFKGETCVESDYEAFDASQDEYIVSFEIAMMEDMGMP 1814
Query: 5320 DALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPVAFAG 5499
+ I+ YIDLKC L CKLGHFA+MRFTGEFCTFLFNTLANMAFT CRY+WR+GQP+AFAG
Sbjct: 1815 NWFINDYIDLKCTLGCKLGHFAIMRFTGEFCTFLFNTLANMAFTFCRYDWRKGQPIAFAG 1874
Query: 5500 DDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVA 5679
DDMC+L+NL + F+ +F+++SL+AKV RTE PMFCGWRL+ YGIVKEPELV+NRF +A
Sbjct: 1875 DDMCSLSNLEVSNKFDSIFEKLSLQAKVIRTETPMFCGWRLSKYGIVKEPELVFNRFMIA 1934
Query: 5680 IEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKD 5859
E G V ECLENYAIEVSYAY+L ERL+EVLKSE QI+YHQ VVRFI+ ++K+KTKVKD
Sbjct: 1935 KERGNVDECLENYAIEVSYAYSLGERLFEVLKSEEQIEYHQCVVRFIIQRLEKIKTKVKD 1994
Query: 5860 LFQEQ 5874
LF +Q
Sbjct: 1995 LFSDQ 1999
Score = 335 bits (859), Expect = 1e-88
Identities = 171/437 (39%), Positives = 254/437 (58%), Gaps = 8/437 (1%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MA ++ +T E K D + + +E + + HFA+ + K+ L+S+G
Sbjct: 1 MASIAVRTPYESFFAANSKDDQRLLLNSGLEFVKRELDAVGVHFAYQLSSQKKEALTSMG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVVARQ-----N 402
V L P +L HSHPF KT+ENH+L VLP ++ N K++F SIK++K++ + ++ N
Sbjct: 61 VSLHPVPFLSHSHPFCKTVENHMLLNVLPDLMGNGKWIFSSIKKRKIDTITKKRGVQASN 120
Query: 403 ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHWG 582
+ +N+++ +D +RY VH N + + F N + +K F HDE+HHW
Sbjct: 121 VDFVNKVICAKDFTRYDFDPKVHDVRTNMSSREFIFPNSYIRACHNNK-IFIHDEIHHWS 179
Query: 583 KKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKI--VRDKLFFFPDGVSSE 756
++ FLN P+ ++ +VVYPPELL G QNP +Y+F++ + KLFFFPD SE
Sbjct: 180 ADDMIYFLNNSNPKMLICSVVYPPELLRGIKQPQNPSLYSFEVDEKKQKLFFFPDNCKSE 239
Query: 757 GYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVD 936
Y+QP L WLF+ Y+ G + +T+ S Y+HH+F+I PG+ +TE FFNDFD +D
Sbjct: 240 AYEQPLRLDWLFEAAYIDTGVKRYTVKLIKSAYSHHMFQITPGEYVTESRRFFNDFDTID 299
Query: 937 MHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFF 1116
+ M +NRF+ YD P+ H+ KVYSYLLCLKKPDVESGLAKLRQ+ DD + + FF
Sbjct: 300 LSIMHENRFRYYDYIPIKKTHLQKVYSYLLCLKKPDVESGLAKLRQMFDDDQDCRVVEFF 359
Query: 1117 EQLCKRFIER-GTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLGTL 1293
+ CK IE+ + ++G S LE FIK P R K W+ NIFDFL++L TL
Sbjct: 360 SKFCKDIIEKHKNKWELYGFSWLETAKDSFIKSLPIQIARCFKRWEFKNIFDFLFNLQTL 419
Query: 1294 CIQIDRGTCYSHIIETF 1344
+ ++ + +F
Sbjct: 420 SVSVNTRVVTRTFVSSF 436
>gb|AKN08994.1| replicase [Caucasus prunus virus]
Length = 1986
Score = 1001 bits (2589), Expect = 0.0
Identities = 545/1161 (46%), Positives = 736/1161 (63%), Gaps = 12/1161 (1%)
Frame = +1
Query: 2431 GYHDIR-LEKFSFAPEHFVCHSFRGRKAAFLTKVGA-DYGHNGMLYPVNDWVPSLDAILE 2604
G++D L K + F + R A F ++ + DYGHN + Y N W +D +L
Sbjct: 835 GFNDFEELRKVVGSISMFKKTPLKNRDAFFFSESKSIDYGHNRIKYAHNHW-NGVDQLLP 893
Query: 2605 ICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEV-DKRIVEF 2781
++YN+ LIQ Y+EG S+G+HRDNE VY + SIL++NL G F+IE + F
Sbjct: 894 -SSLRNDYNAMLIQVYKEGGSIGMHRDNEKVYDNDSILSINLNGDALFQIEAKSSKRYSF 952
Query: 2782 AMEDASFFTMPSGFQKRARHGVT-ATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCL 2958
M+D +F M FQ + RHGV AT+ R+++TFR HVR + I + K +N CL
Sbjct: 953 RMKDGDYFLMKRDFQAKFRHGVQGATEGRINVTFRKHVRNSRNEPIYLG--ISKFKNICL 1010
Query: 2959 IVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDE 3138
+ +++ K + ALI NK+YW +F++ G +L D N+ AE L E++MN++
Sbjct: 1011 MRSLSILEKRPLYDILLALIKKNKNYWTSFLEFGVGGTLADLNQAAEDLSFRFELYMNEK 1070
Query: 3139 IKVMDFGQTVIKIKFEANHFSALREFI-NMPRSSFSHLQKKANVSAVKGLVEK----ISK 3303
+ ++ +HFS RE N+ + + + K+ S + +
Sbjct: 1071 WIAGGNRGPIYRLNLSDDHFSVHRELSGNVEDTQLNFSKAKSKQSNFSSSDDDNSFDLDS 1130
Query: 3304 CPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVL-DNGAKFFERSFKLSEECSNISTE 3480
H N F + ++LR+SFL RTTG +L + +NGA R ++ + E
Sbjct: 1131 IEHVNKSLFEPLNDAAELLRQSFLNRTTGKILSDAFGENGAHL--RRIRIVKSDDPFPEE 1188
Query: 3481 LHCMIGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFES 3660
++ GFAGSGKS +Q L K F V+ PR L DW K+ S +KVCTFE
Sbjct: 1189 VYFSCGFAGSGKSLSLQSKLKSNFKLKFLVICPRVELKEDWERKVKCSS---HKVCTFEV 1245
Query: 3661 FIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKS-KAEVVLLFDPLQARYHNEKDKD 3837
+ + S +ELIVIDE+ LFP GY+D +I+ L+ K+ K +V+LLFDPLQARYH++ D+
Sbjct: 1246 ALLQNLSRVELIVIDELGLFPRGYLDLMIFKLRTEKNFKGKVMLLFDPLQARYHSDSDER 1305
Query: 3838 ILTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVNGPEDIK 4017
L H+ DR+ + INYL+ S+RL+K FF F VD+ + + ++ +
Sbjct: 1306 FLHEIHECDRITSGAKINYLFESWRLSKKFFGNFFVDIELRNSGSVNYELDFFDNHIVAA 1365
Query: 4018 GSFGERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRW 4194
+R FP D++LV S+ EK + ++ +TFGE+QGLT H CIVLSE ++ RW
Sbjct: 1366 NEAKKRGFPIDLILVASRDEKNSFAGKVNVLTFGEAQGLTVKHSCIVLSEYAEKQDDYRW 1425
Query: 4195 NVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDL 4374
VA TRAKE++SF+ SH GL F+++ + G MV L+
Sbjct: 1426 VVALTRAKEKISFITSHRSGLTGFMSSMIGRPIHAFLTGLPFTSNRMNWMVNCELVECHR 1485
Query: 4375 VMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFA 4554
GG DE+DRE+RLEGDPFLKPF+F+GQRIN +E E + EP+ + HL IS+ N+A
Sbjct: 1486 ATGGR-DEVDREDRLEGDPFLKPFVFLGQRINSEEYEIIEPEVIEPKGRVHLCISQENYA 1544
Query: 4555 QCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEM 4734
NFDLIR KE RE + L T+QFC +YN+ G + + PLRF++I+P+H DD++
Sbjct: 1545 LARNFDLIRAKEYREAKLMGLETNQFCHDYNRVGAQGSRHVASPLRFESIFPRHRSDDDL 1604
Query: 4735 TFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEV 4914
TFWMAVKKRL F E R +L D++ +G L+Y+N K L F DQGLL+ C+NDFE
Sbjct: 1605 TFWMAVKKRLRFSEEFLERAKLKDSYSVGNLLYQNLKEKLSLSFSWDQGLLDECLNDFET 1664
Query: 4915 KKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILV 5094
KKL KS+AT+ +HSIRS++DW+++ +FLFMKSQLCTK+EKQ+VDAKAGQTLACF HL+L
Sbjct: 1665 KKLLKSKATLANHSIRSDIDWSMDKIFLFMKSQLCTKYEKQYVDAKAGQTLACFSHLVLA 1724
Query: 5095 QFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEY 5274
+FAP+CRY+E+ +R L EEIYIHSNKNF+DLN+W KFF VESDYEAFDA QD Y
Sbjct: 1725 KFAPYCRYMEKMLRRNLKEEIYIHSNKNFNDLNDWVVKFFEEGEKVESDYEAFDASQDHY 1784
Query: 5275 ILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTM 5454
+L+FE+ +M+D GLP+ I+ YIDLKC L CKLGHFA+MRFTGEF TFLFNTLANMAFT
Sbjct: 1785 VLAFEVCVMEDMGLPNWFINDYIDLKCTLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTF 1844
Query: 5455 CRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYG 5634
RYE P+AFAGDDMC L + FE+V ++SLKAKV RTE PMFCGW L+ YG
Sbjct: 1845 ARYECDHKTPIAFAGDDMCMLKACKVSDKFEDVLSKLSLKAKVIRTEMPMFCGWNLSRYG 1904
Query: 5635 IVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVR 5814
IVKEPELV+NRF VA + G + ECLENYAIEVSYAY+L E+LYEVLK E Q++YHQAVVR
Sbjct: 1905 IVKEPELVFNRFMVAKKRGNIDECLENYAIEVSYAYSLGEKLYEVLKREEQVEYHQAVVR 1964
Query: 5815 FIVTHIDKLKTKVKDLFQEQS 5877
FIV +DKLKTKVKDLF +Q+
Sbjct: 1965 FIVQRLDKLKTKVKDLFSDQN 1985
Score = 295 bits (756), Expect = 2e-76
Identities = 159/423 (37%), Positives = 239/423 (56%), Gaps = 6/423 (1%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 237
MA ++ +T +E +K D + I V + + + HFA+ ++ K+ L+++G
Sbjct: 1 MASVTVRTPMEKFFAANDKNDQRSILTSGVNFVKKFCDDKGIHFAYYVNDRKKEALTNLG 60
Query: 238 VELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVV-----ARQN 402
V L P +L HSHPF KTLENH+L VLP+++ N ++F S+K+ K+N V+ N
Sbjct: 61 VTLHPIPFLTHSHPFCKTLENHLLINVLPNLLGNGHWVFTSVKKAKVNSVIKLAGGVSNN 120
Query: 403 ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHWG 582
+ ++N + +D RY N ++ F +++ K K F HDEVHHW
Sbjct: 121 VDIVNRCICAKDFGRYDFEPGSVDQKINILSKDHLFPKNFIRSVRK-KKIFIHDEVHHWS 179
Query: 583 KKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLFFFPDGVSSEGY 762
N+ +FL ++ +VV+PPELLGG QN +Y F++ DKLFFFPDG SE Y
Sbjct: 180 HLNMIQFLEETATPLLLCSVVFPPELLGGIKTPQNSALYGFQVDGDKLFFFPDGSRSEMY 239
Query: 763 QQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVDMH 942
+QP+NL WLF+ Y+ +T+ S YAHHLF+I G+ IT+ FF DF+ +DM
Sbjct: 240 EQPSNLNWLFEASYIHTSAGTYTVKMVGSFYAHHLFQISKGEKITDSVRFFADFNTIDMS 299
Query: 943 HMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQ 1122
+ K RFK YDL P+ H+ K+Y+YLLCLKKPDVES +AKLRQ++ D+ + + FF
Sbjct: 300 VIHKERFKYYDLIPIKKSHIEKIYTYLLCLKKPDVESAIAKLRQLMEDEQDCRVVEFFCT 359
Query: 1123 LCKRFI-ERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLGTLCI 1299
K+ I + + +FG S L+ FI P+ W NIF FL+ L T+ +
Sbjct: 360 FAKKLITDTKGAINLFGDSFLQKAKDSFIMALPNSIASCFDRWHGLNIFHFLFTLDTIRV 419
Query: 1300 QID 1308
+++
Sbjct: 420 KVE 422
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 961 bits (2483), Expect = 0.0
Identities = 469/615 (76%), Positives = 525/615 (85%)
Frame = +1
Query: 4048 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4227
VLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4228 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4407
SF + LGG+DDF L I+ GEK+ MV+ NLI K G DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119
Query: 4408 EERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4587
EERLEGDPFLKPFIF+GQRI + + + E V I+EPRCQTHLYI+EPNF CYNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4588 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4767
E+REYREDMLVT+QFCD+Y+K T GP+RFKAIYPKHS DD+MTFWMAVKKRL+
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239
Query: 4768 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4947
FR E+EN +RLS AHL+GGL+YRNFK L+F DQGLLE +N FE KKL+KS+ TIK
Sbjct: 240 FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIK 299
Query: 4948 SHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5127
SHSIRS++DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 300 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359
Query: 5128 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5307
QIR+QLPEEIY+HSNKNFDDLN+W KKFF RDI VESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360 QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKD 419
Query: 5308 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5487
A P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQP+
Sbjct: 420 ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479
Query: 5488 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5667
AFAGDDMCALNNLP+ + F+++F+ +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480 AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539
Query: 5668 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5847
FQVAIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540 FQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599
Query: 5848 KVKDLFQEQSSDEDI 5892
KV+DLF EQSSDEDI
Sbjct: 600 KVRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 957 bits (2473), Expect = 0.0
Identities = 467/615 (75%), Positives = 524/615 (85%)
Frame = +1
Query: 4048 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4227
VLLV+S +EK+ ++ I +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4228 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4407
SF + LGG+DDF L I+ GEK+ MV+ NLI K G DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119
Query: 4408 EERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4587
EERLEGDPFLKPFIF+GQRI + + + E V I+EPRCQTHLYI+EPNF CYNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4588 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4767
E+REYREDMLVT+QFCD+Y+K T GP+RFKAIYPKHS DD+MTFWMAVKKRL+
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239
Query: 4768 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4947
FR E+EN +RLS AHL+GGL+YRNFK L+F DQGLLE +N FE KKL+KS+ TI+
Sbjct: 240 FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIR 299
Query: 4948 SHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5127
SHSIRS++DWALNDVFLFMKSQL TK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 300 SHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359
Query: 5128 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5307
QIR+QLPEEIY+HSNKNFDDLN+W KKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360 QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 419
Query: 5308 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5487
A P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQP+
Sbjct: 420 ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479
Query: 5488 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5667
AFAGDDMCALNNLP+ + F+++F+ +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480 AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539
Query: 5668 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5847
FQVAIEEGKVMECLENYAIEVSYAY+LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540 FQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599
Query: 5848 KVKDLFQEQSSDEDI 5892
KV+DLF EQSSDEDI
Sbjct: 600 KVRDLFLEQSSDEDI 614
>gb|AQQ73540.1| replicase [Apricot vein clearing associated virus]
Length = 2022
Score = 956 bits (2472), Expect = 0.0
Identities = 565/1341 (42%), Positives = 769/1341 (57%), Gaps = 68/1341 (5%)
Frame = +1
Query: 2071 RLINVPADGNCFFHAITEVYQCTEDHVQMRKNFSEWLLDRDPYHHLGKLIAKDGVFMEHE 2250
++I ADG CFFH + + F ++ + D H ++G + E
Sbjct: 713 QIIQASADGRCFFHTLLSTSLFRGSVNNLVNTFCNFIKNLD--EHEAARQVQEGAYPEGW 770
Query: 2251 LIYLFALSRGLKIVVH---FEDKIFQFGEG-------EEEGH---IHCDGHHFMAYETYT 2391
+I LF + G+++ H + + G G + E H + C T
Sbjct: 771 MINLFLANYGIRMCCHQHSADGVTIETGSGPISFCSLKMENHFDYLRCLSSGVSKEHTGL 830
Query: 2392 FSRMNFK---LLDNLEGYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGA-DYGHNGML 2559
+ + +++ L+G SFRGR + F + DYGHNG
Sbjct: 831 LGKTTYPSGPIINALQGLKP---------------KSFRGRSSFFFARSNEIDYGHNGFK 875
Query: 2560 YPVNDWVPSLDAILEICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGS 2739
Y +W LD + D +N+ L+Q Y++G+ +G H+DNE Y ILTVN G
Sbjct: 876 YRTENWFAELD---DFIPSDLIFNACLVQVYDKGSKIGFHKDNEQCYAGYPILTVNF-GL 931
Query: 2740 CNFRIEVDKRIVEFAMEDASFFTMPSGFQKRARHGVTA-TKNRVSITFRTHVRMMSGKAI 2916
F + + F + D + + K+ RH VT+ + NR+S+TFR HV M+ +
Sbjct: 932 ALFEFDSGEA---FNLTDGDTILLSGDYLKKKRHRVTSLSDNRISLTFRRHVCRMNKSPL 988
Query: 2917 SE-SKELKKKRNKCLIVAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNEL 3093
S + K +NKC+I AVA AL + V ++ A + L + D + +
Sbjct: 989 EFFSNDGKLGKNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTETI 1047
Query: 3094 AECLKVNLEVHMNDEIKVMDFG-QTVIKIKFEA--NHFSALREFINMPRSSFSHLQKKAN 3264
+ ++ + DE + M+ + +IK F H L + N + +
Sbjct: 1048 CVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDVPNCRSKKGIDICMSPD 1107
Query: 3265 VSAVKGLVEKISKCPHYNLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSF 3444
++ C + ++ + A+ E L SFL TTG VL E++ G++FF
Sbjct: 1108 LANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMD 1167
Query: 3445 KLSEECSNISTELHCMIGFAGSGKSKVMQD---------WLGKVKK-------------- 3555
++E S+ EL + GFAGSGKS + + L K KK
Sbjct: 1168 SVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRISREVHLAKEKKRMGKGNGKGHEKKE 1227
Query: 3556 ------SSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELIVIDEVTL 3717
S C++SPR L DW KLG S + V TFE F K S ++LIV+DE+TL
Sbjct: 1228 RNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSVTTFEIFFKASISKIKLIVVDELTL 1287
Query: 3718 FPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVNDMNINYL 3897
FPNGYID LI+ ++ +++L+FDPLQARY + +D+ IL HDVD ++ D ++Y+
Sbjct: 1288 FPNGYIDLLIFRIRTESPNCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYM 1347
Query: 3898 YGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVNGPEDIKGS-FGERPFP---------- 4044
Y S R + FN+ + +++E D++ E KG+ F R +
Sbjct: 1348 YQSKRFESE--ELFNLFEDLKKKNEVDAE-----SREMGKGAKFRPRMYTNLLTMKVEEE 1400
Query: 4045 ------DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAW 4206
DVLLV S E ++ I+T+TFGESQGLT +H I+LSE++A S++ RW VA
Sbjct: 1401 NQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVAL 1460
Query: 4207 TRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGG 4386
TRA+++V+FL HL GL+ FL+ + L ++N + MVR+ L +
Sbjct: 1461 TRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKRLSSMVRAKLNYVKFKGLA 1520
Query: 4387 AIDEMDREERLEGDPFLKPFIFIGQRINEQEIECETVSIQEPRCQTHLYISEPNFAQCYN 4566
DE+DRE+RLEGD FLK IF+GQR E E + + +TH ++ + NFAQCYN
Sbjct: 1521 GKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYN 1580
Query: 4567 FDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWM 4746
FD IR KE RE+R VT+QF DNY T GPLRF+AIYP+H DD++TF M
Sbjct: 1581 FDNIRAKELREFRIGYRVTNQFIDNYEIVQHGQKKHTAGPLRFEAIYPRHCADDDVTFLM 1640
Query: 4747 AVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLK 4926
AV KRL F +E + R +L AH G +++ N + L F D L E CVNDFE KKL+
Sbjct: 1641 AVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLE 1700
Query: 4927 KSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAP 5106
KS+A + +HSIRS+ DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV FAP
Sbjct: 1701 KSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAP 1760
Query: 5107 WCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSF 5286
+CRY+E+Q+R QLP EIYIHSNKNF+DLNEW KK+ D+CVESDYEAFDA QD+YILSF
Sbjct: 1761 YCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCVESDYEAFDASQDQYILSF 1820
Query: 5287 EIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYE 5466
E+ +M+ +P+ +I AYIDLK L CKLGHFA+MRFTGEF TFLFNTLANMAFTMCRYE
Sbjct: 1821 ELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYE 1880
Query: 5467 WRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKE 5646
W G P+AFAGDDMCAL NL + F VF++ISLKAK + TE PMFCGWRL+ +GIVKE
Sbjct: 1881 WNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFCGWRLSKFGIVKE 1940
Query: 5647 PELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVT 5826
PELVYNRF VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRFIV
Sbjct: 1941 PELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVK 2000
Query: 5827 HIDKLKTKVKDLFQEQSSDED 5889
H+ L+TKVKDLF EQ SDED
Sbjct: 2001 HLGDLRTKVKDLFAEQ-SDED 2020
Score = 316 bits (809), Expect = 9e-83
Identities = 183/487 (37%), Positives = 268/487 (55%), Gaps = 4/487 (0%)
Frame = +1
Query: 64 LLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIGVE 243
+L+ K+ E N E I A ++L + HFA+ + LK+KLSS+GV
Sbjct: 4 ILNYKSPSEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63
Query: 244 LFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVVARQNITLL--- 414
L P YL HSHPFSK LENHIL VLP I ++F SIK K+ + + ++L
Sbjct: 64 LHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLKTI 122
Query: 415 NEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHWGKKNL 594
N ++ +D RY +V+ S + + + + F K ++ HDEVHHW ++
Sbjct: 123 NRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDM 181
Query: 595 FKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR-DKLFFFPDGVSSEGYQQP 771
FL+R +P R VF+VVYP ELL G SQNPKMY F+ + DK+ FFPDG +SEGY+Q
Sbjct: 182 LGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQR 241
Query: 772 ANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVDMHHMF 951
ANL WLF + WT+ R S Y+HHLFE+VPG T++ FFNDF+ +D+ +F
Sbjct: 242 ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 301
Query: 952 KNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 1131
K+RF D P++ V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+ +FF L
Sbjct: 302 KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 361
Query: 1132 RFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLGTLCIQIDR 1311
R + + +F S++ KF+ F PD + TWK N FDFL L L +++
Sbjct: 362 RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV-- 419
Query: 1312 GTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLERVKLPFFNYKGDP 1491
P E+V DS+ + + FD + + + V G+ +R +P +
Sbjct: 420 -----------PTEIV--DSTFERNFVSLFDVDPHVSAPLVIKGF-KRFMMPHSEVEKRV 465
Query: 1492 RKKEVYH 1512
+ E H
Sbjct: 466 NRDEASH 472
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus]
emb|CDF66416.2| replication-associated polyprotein [Apricot vein clearing associated
virus]
Length = 1679
Score = 939 bits (2428), Expect = 0.0
Identities = 533/1184 (45%), Positives = 715/1184 (60%), Gaps = 52/1184 (4%)
Frame = +1
Query: 2491 SFRGRKAAFLTKVGA-DYGHNGMLYPVNDWVPSLDAILEICDPDSNYNSALIQWYEEGAS 2667
SFRGR + F + DYGHNG Y +W LD + D +N+ L+Q Y++G+
Sbjct: 510 SFRGRSSFFFARSNEIDYGHNGFKYRTENWFAELD---DFIPSDLIFNACLVQVYDKGSK 566
Query: 2668 LGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFFTMPSGFQKRARHGV 2847
+G H+DNE Y ILTVN G F + + F + D + + ++ RH V
Sbjct: 567 IGFHKDNEQCYAGYPILTVNF-GLALFEFDSGEA---FNLTDGDTILLSGDYLRKKRHRV 622
Query: 2848 TA-TKNRVSITFRTHVRMMSGKAISE-SKELKKKRNKCLIVAVAGALKSSEEKVCQALIS 3021
T+ + +R+S+TFR HV M+ + S K +NKC+I AVA AL + V ++
Sbjct: 623 TSLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIV- 681
Query: 3022 ANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFG-QTVIKIKFEA--N 3192
A + L + D + + + ++ + DE + M+ + +IK F
Sbjct: 682 AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDE 741
Query: 3193 HFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISKCPHYNLLPFNANGEFFQMLRKSF 3372
H L + N + +++ C + ++ + A+ E L SF
Sbjct: 742 HMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSF 801
Query: 3373 LQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGKSKVMQD------ 3534
L TTG VL E++ G++FF ++E S+ EL + GFAGSGKS + +
Sbjct: 802 LAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRIS 861
Query: 3535 ---WLGKVKKS--------------------SFCVVSPRTVLTSDWIFKLGLSGRDGNKV 3645
L K KK S C++SPR L DW KLG S + V
Sbjct: 862 REIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSV 921
Query: 3646 CTFESFIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNE 3825
TFE K S ++LIV+DE+TLFPNGYID LI+ ++ +++L+FDPLQARY +
Sbjct: 922 TTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYDSA 981
Query: 3826 KDKDILTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVNGP 4005
+D+ IL HDVD ++ D ++Y+Y S R + FN+ ++++E D++
Sbjct: 982 QDRAILGSEHDVDLILGDSEVDYMYQSKRFESE--ELFNL-FEDLKKNEVDAE-----SR 1033
Query: 4006 EDIKGS-FGERPFP----------------DVLLVDSQVEKEMYNRQIRTITFGESQGLT 4134
E KG+ F R + DVLLV S E ++ I+T+TFGESQGLT
Sbjct: 1034 ETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLT 1093
Query: 4135 FNHVCIVLSESTASSNELRWNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGE 4314
+H I+LSE++A S++ RW VA TRA+++V+FL HL GL+ FL+ + L ++N
Sbjct: 1094 VDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKG 1153
Query: 4315 KLDHAFYRKMVRSNLIFKDLVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECET 4494
+ MVR+ L + DE+DRE+RLEGD FLK IF+GQR E E
Sbjct: 1154 LVTKKRLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVE 1213
Query: 4495 VSIQEPRCQTHLYISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNAS 4674
+ + +TH ++ + NFAQCYNFD IR KE RE+R VT+QF DNY
Sbjct: 1214 PVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKH 1273
Query: 4675 TVGPLRFKAIYPKHSHDDEMTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSF 4854
T GPLRF+AIYP+H DD++TF MAV KRL F +E + R +L AH G +++ N +
Sbjct: 1274 TAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKL 1333
Query: 4855 DLKFVHDQGLLERCVNDFEVKKLKKSQATIKSHSIRSNVDWALNDVFLFMKSQLCTKFEK 5034
L F D L E CVNDFE KKL+KS+A + +HSIRS+ DW+ N VFLFMKSQLCTK+EK
Sbjct: 1334 GLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEK 1393
Query: 5035 QFVDAKAGQTLACFQHLILVQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFF 5214
Q+VDAKAGQTLACFQH+ILV FAP+CRY+E+Q+R QLP EIYIHSNKNF+DLNEW KK
Sbjct: 1394 QYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHA 1453
Query: 5215 MRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMR 5394
D+CVESDYEAFDA QD+YILSFE+ +M+ +P+ +I AYIDLK L CKLGHFA+MR
Sbjct: 1454 GDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMR 1513
Query: 5395 FTGEFCTFLFNTLANMAFTMCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLK 5574
FTGEF TFLFNTLANMAFTMCRYEW G P+AFAGDDMCAL NL + F VF++ISLK
Sbjct: 1514 FTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLK 1573
Query: 5575 AKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSE 5754
AK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAY+L E
Sbjct: 1574 AKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGE 1633
Query: 5755 RLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDE 5886
RL+++LK E Q++YHQAVVRFIV H+ L+TKVKDLF EQS+++
Sbjct: 1634 RLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677
Score = 280 bits (717), Expect = 4e-72
Identities = 165/417 (39%), Positives = 234/417 (56%), Gaps = 7/417 (1%)
Frame = +1
Query: 58 MALLSNKTAIECMLGNFEKTDIKRIYQPAVETLVSHSEFRNSHFAFAMDPFLKKKLSS-- 231
MALL + +LG+F + ++ IY E R F + KK S
Sbjct: 1 MALLYRTPQVN-LLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59
Query: 232 -IGVELFPNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVVARQNIT 408
+GV L P YL HSHPFSK LENHIL VLP I ++F SIK K+ + + +
Sbjct: 60 WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKS 118
Query: 409 LL---NEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHW 579
+L N ++ +D RY +V+ S + + + + F K ++ HDEVHHW
Sbjct: 119 VLKTINRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFVRAVKGRNVMIHDEVHHW 177
Query: 580 GKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR-DKLFFFPDGVSSE 756
++ FL+R +P R VF+VVYP ELL G SQNPKMY F+ + DK+ FFPDG +SE
Sbjct: 178 TLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGRASE 237
Query: 757 GYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVD 936
GY+Q ANL WLF + WT+ R S Y+HHLFE+VPG T++ FFNDF+ +D
Sbjct: 238 GYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETID 297
Query: 937 MHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFF 1116
+ +FK+RF D P++ V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+ +FF
Sbjct: 298 LQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFF 357
Query: 1117 EQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLG 1287
L R + + +F S++ KF+ F PD + TWK N F+ LG
Sbjct: 358 RSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGN---FIKKLG 411