BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00039146
         (489 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     253   5e-75
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   241   3e-71
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   241   1e-70
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   240   2e-70
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   239   3e-70
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   231   4e-69
gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]   234   2e-68
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   232   2e-68
gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposo...   231   3e-68
emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]   225   2e-67
ref|XP_020421230.1| uncharacterized protein LOC18775571 [Prunus ...   231   2e-67
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   223   4e-67
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   229   1e-66
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo...   218   5e-66
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   226   2e-65
gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposo...   214   3e-65
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   217   5e-65
gb|PNX69528.1| copia-type polyprotein, partial [Trifolium pratense]   207   7e-65
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   209   8e-65
gb|KYP73784.1| Retrovirus-related Pol polyprotein from transposo...   211   3e-64

>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  253 bits (646), Expect = 5e-75
 Identities = 116/160 (72%), Positives = 135/160 (84%)
 Frame = +1

Query: 10  NSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPK 189
           N+ TED  QLWHCRYGHLSF GL+ LQQ+ MV GLPQ +  SK+C+DCL GKQ R + PK
Sbjct: 444 NTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPK 503

Query: 190 ESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKS 369
           +S WRA+E+LQLVH+DICGPINP+SNSKKRYL TF DDFSRKTWVYFL+EKSEAF +FKS
Sbjct: 504 KSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAFAVFKS 563

Query: 370 YKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           +K+ VEKET S+L+CLRTDRGGEFTS EF  FC  +GIRR
Sbjct: 564 FKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRR 603


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  241 bits (615), Expect = 3e-71
 Identities = 109/157 (69%), Positives = 128/157 (81%)
 Frame = +1

Query: 19  TEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKEST 198
           +ED T LWHCRYGHLSF GL+ LQ + MVKGLP  K SSK+C+DC+ GKQ R++ PK+S 
Sbjct: 145 SEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSM 204

Query: 199 WRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKS 378
           WRAS  LQL+HSDICGPI P+SNS+KRYL +FIDD+SRKTWVYFL EKS+AF  FKS+K 
Sbjct: 205 WRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKC 264

Query: 379 RVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            VEKETG Y++CLRTDRGGEFTS EF  FC  +GI R
Sbjct: 265 LVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISR 301


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  241 bits (614), Expect = 1e-70
 Identities = 109/157 (69%), Positives = 128/157 (81%)
 Frame = +1

Query: 19  TEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKEST 198
           +ED T LWHCRYGHLSF GL+ LQ + MVKGLP  K SSK+C+DC+ GKQ R++ PK+S 
Sbjct: 426 SEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSM 485

Query: 199 WRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKS 378
           WRAS  LQL+HSDICGPI P+SNS+KRYL +FIDD+SRKTWVYFL EKS+AF  FKS+K 
Sbjct: 486 WRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKC 545

Query: 379 RVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            VEKETG Y++CLRTDRGGEFTS EF  FC  +GI R
Sbjct: 546 LVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISR 582


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  240 bits (612), Expect = 2e-70
 Identities = 112/160 (70%), Positives = 131/160 (81%)
 Frame = +1

Query: 10  NSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPK 189
           N+ TED   LWHCRYGHLSF GL+ LQQK MV GLPQLK   ++C+DCL GKQ+R +FP 
Sbjct: 403 NAITEDIVHLWHCRYGHLSFKGLKTLQQKKMVNGLPQLKSPLRLCKDCLVGKQQRYSFPW 462

Query: 190 ESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKS 369
           +STWRAS++L LVH+DI GPI P+SNSKKRYL TF DDFSRKTWVYFLIEKSEAF++FK 
Sbjct: 463 KSTWRASQILXLVHADIXGPIKPISNSKKRYLITFTDDFSRKTWVYFLIEKSEAFVVFKR 522

Query: 370 YKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           +K  VEKET S+++ L TDRGGEFTS EF +FC  NGIRR
Sbjct: 523 FKIHVEKETNSFIRALXTDRGGEFTSXEFTNFCDVNGIRR 562


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  239 bits (611), Expect = 3e-70
 Identities = 108/157 (68%), Positives = 128/157 (81%)
 Frame = +1

Query: 19  TEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKEST 198
           +ED T LWHCRYGHLSF GL+ LQ +NMVKGLP  K  SK+C+DC+ GKQ R++ PK+S 
Sbjct: 424 SEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSM 483

Query: 199 WRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKS 378
           WRAS  LQL+HSDICGPI P+SN++KRYL +FIDD+SRKTWVYFL EKS+AF  FKS+K 
Sbjct: 484 WRASHRLQLIHSDICGPIKPLSNNRKRYLISFIDDYSRKTWVYFLNEKSQAFTTFKSFKC 543

Query: 379 RVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            VEKETG Y++CLRTDRGGEFTS EF  FC  +GI R
Sbjct: 544 LVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISR 580


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  231 bits (589), Expect = 4e-69
 Identities = 105/161 (65%), Positives = 128/161 (79%)
 Frame = +1

Query: 7   LNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFP 186
           + + ++D + LWHCRY HL++ GL+ L  + MVKGLPQ+K S++VC DCL GKQ RD+ P
Sbjct: 433 MQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSRDSIP 492

Query: 187 KESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFK 366
           K S WRAS+ LQLVH+DICGPI P SNS KRY+ +FIDDFSRK WVYFL EKS+AF MFK
Sbjct: 493 KSSQWRASQRLQLVHADICGPITPTSNSDKRYVLSFIDDFSRKMWVYFLTEKSQAFTMFK 552

Query: 367 SYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            YKS VEKE G  + CLRTDRGGEFTS+EF +FC+ NGI+R
Sbjct: 553 RYKSLVEKEIGFPICCLRTDRGGEFTSNEFNEFCQSNGIKR 593


>gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]
          Length = 1321

 Score =  234 bits (598), Expect = 2e-68
 Identities = 107/161 (66%), Positives = 130/161 (80%)
 Frame = +1

Query: 7   LNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFP 186
           L +   D + LWH R+GHL+FNGL++LQQK MVKGLPQ++  S VCE+CL  KQ R++FP
Sbjct: 422 LKASISDPSWLWHYRFGHLNFNGLRVLQQKEMVKGLPQIETPSHVCEECLIAKQHRNSFP 481

Query: 187 KESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFK 366
           +ESTWRAS VLQLVHSDICGP+NP SNS KRY  TF DDFSRKTWVYFL EKSEA  MF+
Sbjct: 482 QESTWRASHVLQLVHSDICGPMNPTSNSNKRYFITFTDDFSRKTWVYFLKEKSEALEMFR 541

Query: 367 SYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            +K+RVEKE    ++CLRTDRGGE+TS EF++ C+ NGI+R
Sbjct: 542 KFKARVEKEKNQPIQCLRTDRGGEYTSSEFVNLCESNGIKR 582


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 930

 Score =  232 bits (592), Expect = 2e-68
 Identities = 111/160 (69%), Positives = 129/160 (80%)
 Frame = +1

Query: 10  NSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPK 189
           N+ TED  QLWHCR+GHLSF GLQ LQQK MV+GL  LK  SK+C+D L GKQ RD+FP 
Sbjct: 399 NTVTEDVAQLWHCRFGHLSFKGLQTLQQKGMVEGLAMLKPPSKLCKDYLIGKQHRDSFPM 458

Query: 190 ESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKS 369
           +S+WRAS++LQLVH+DICGPI P+SNSKKRYL TFIDDFSRKTWVYFL EKSEAF +FKS
Sbjct: 459 KSSWRASQILQLVHADICGPIKPVSNSKKRYLLTFIDDFSRKTWVYFLAEKSEAFTVFKS 518

Query: 370 YKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           +K  VEK T   LK LRTD GGEFTS EF +F   +G++R
Sbjct: 519 FKLHVEKATNMSLKGLRTDLGGEFTSREFNNFFHAHGVQR 558


>gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 884

 Score =  231 bits (590), Expect = 3e-68
 Identities = 103/160 (64%), Positives = 127/160 (79%)
 Frame = +1

Query: 10  NSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPK 189
           ++  +D T LWH RYGHLSF GL+ L +KNMV+GLP++   +++CEDC+ GKQ RD+FP 
Sbjct: 398 STRVQDPTWLWHLRYGHLSFKGLKTLHEKNMVEGLPKINCPTEICEDCIVGKQHRDSFPH 457

Query: 190 ESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKS 369
              WRA ++LQLVHSDICGPINP SN  KRY   FIDD SRKTWVYFL EKSEAF++FKS
Sbjct: 458 GKAWRAQQILQLVHSDICGPINPTSNGNKRYFIIFIDDHSRKTWVYFLQEKSEAFLIFKS 517

Query: 370 YKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           +KSRVEKE+G Y++ LRTDRGGEF SH F  FC+ +GI+R
Sbjct: 518 FKSRVEKESGKYIQILRTDRGGEFNSHNFASFCELHGIQR 557


>emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]
          Length = 639

 Score =  225 bits (574), Expect = 2e-67
 Identities = 101/156 (64%), Positives = 122/156 (78%)
 Frame = +1

Query: 22  EDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKESTW 201
           ED + LW+CRYGHLS  GL+ LQ   MV GLPQ + S  VC DC+ G Q R+  PK+STW
Sbjct: 410 EDLSHLWYCRYGHLSHKGLRTLQNNKMVNGLPQFEASKTVCTDCMVGTQHRNPIPKKSTW 469

Query: 202 RASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKSR 381
           RA   LQL+H+DICGPI P+ NSKKRYL +FIDDFSRK W+Y L+EKS+A ++FK YKS 
Sbjct: 470 RACSKLQLIHADICGPITPILNSKKRYLISFIDDFSRKAWIYLLVEKSKALVIFKQYKSC 529

Query: 382 VEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           VEKET SY+KCLR +RGGEFTS +F +FCKENGI+R
Sbjct: 530 VEKETSSYIKCLRINRGGEFTSQDFNEFCKENGIKR 565


>ref|XP_020421230.1| uncharacterized protein LOC18775571 [Prunus persica]
          Length = 1135

 Score =  231 bits (589), Expect = 2e-67
 Identities = 101/160 (63%), Positives = 129/160 (80%)
 Frame = +1

Query: 7   LNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFP 186
           L++  +D T LWH RYGHLSF GL+ L +KNM++GLP++   +++CEDC+ GKQ RD+FP
Sbjct: 358 LSTRVQDPTWLWHLRYGHLSFKGLKTLHEKNMMEGLPKINCPTEMCEDCIVGKQHRDSFP 417

Query: 187 KESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFK 366
           +   WRA ++LQLVHSDICGPINP SN  KRY  TFIDD+SRKTW+YFL EKSEAF++FK
Sbjct: 418 QGKAWRAEQILQLVHSDICGPINPTSNGNKRYFITFIDDYSRKTWIYFLQEKSEAFVVFK 477

Query: 367 SYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIR 486
           S+K+RVEKE+G Y++ LRTD GGEF SH F  FC+ +GIR
Sbjct: 478 SFKARVEKESGKYIQILRTDSGGEFNSHNFASFCELHGIR 517


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 560

 Score =  223 bits (567), Expect = 4e-67
 Identities = 100/161 (62%), Positives = 125/161 (77%)
 Frame = +1

Query: 7   LNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFP 186
           L++  ++   LWHCRYGHLS  GL+ LQ K MV GLP LK  + VC  C+ GKQ RD  P
Sbjct: 391 LHTTVQEIAHLWHCRYGHLSHKGLRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHRDPIP 450

Query: 187 KESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFK 366
           K++ WRA++ LQL+H+DICGPI+P SNSKKRYL  FIDDF+ KTW+YF++EKSEA ++FK
Sbjct: 451 KKANWRATQKLQLIHADICGPISPTSNSKKRYLICFIDDFTMKTWIYFMVEKSEALVIFK 510

Query: 367 SYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            YK+ VEKE+G  +KCLRTD+GGEF S EF DFCKE GI+R
Sbjct: 511 HYKNYVEKESGCSIKCLRTDQGGEFVSLEFNDFCKEQGIKR 551


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  229 bits (585), Expect = 1e-66
 Identities = 103/163 (63%), Positives = 129/163 (79%)
 Frame = +1

Query: 1   IYLNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDA 180
           + L ++TED TQLWHCRYGHL+  GLQ LQQKNMV GLP+ ++S+ VC DCL+GKQ R++
Sbjct: 412 VCLQANTEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRES 471

Query: 181 FPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMM 360
            PK S W++S+ L+L+HSDICGPI P+SNS KRY+ TFIDD+SRK WVY+L  KS+AF  
Sbjct: 472 IPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWVYYLSNKSDAFEC 531

Query: 361 FKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           FK +K  VEKET   + CLRTDRGGEF S EF +FC+ NGI+R
Sbjct: 532 FKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKR 574


>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 508

 Score =  218 bits (556), Expect = 5e-66
 Identities = 98/155 (63%), Positives = 120/155 (77%)
 Frame = +1

Query: 25  DQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKESTWR 204
           D T++WH RYGHLS+ GL++L QK MVKGLP+LK+  KVC +C  GKQ RDA  K+STWR
Sbjct: 91  DSTEMWHKRYGHLSYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWR 150

Query: 205 ASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKSRV 384
           A+  L+L+HSDICGP  P SNS +RY  TFIDDFSRKTWV+FL EK+EAF  FK ++  V
Sbjct: 151 ATRRLELIHSDICGPSTPTSNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMV 210

Query: 385 EKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           EKE+   + CLRTDRGGEF S++F +FC  NGIRR
Sbjct: 211 EKESNCVISCLRTDRGGEFNSNDFNEFCTMNGIRR 245


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  226 bits (575), Expect = 2e-65
 Identities = 101/163 (61%), Positives = 127/163 (77%)
 Frame = +1

Query: 1   IYLNSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDA 180
           + L ++ ED TQLWHCRYGHL+  GLQ LQQKNMV GLP+ ++S+ VC DCL+GKQ R++
Sbjct: 412 VCLQANIEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRES 471

Query: 181 FPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMM 360
            PK S W++S+ L+L+HSDICGPI P+SNS KRY+ TFIDD+SRK W Y+L  KS+AF  
Sbjct: 472 IPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWAYYLSNKSDAFEC 531

Query: 361 FKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           FK +K  VEKET   + CLRTDRGGEF S EF +FC+ NGI+R
Sbjct: 532 FKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKR 574


>gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 421

 Score =  214 bits (545), Expect = 3e-65
 Identities = 98/148 (66%), Positives = 118/148 (79%)
 Frame = +1

Query: 10  NSHTEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPK 189
           +S T+D+  LWHCRYGHLSF GL  L Q+ MV GLP +K  + +C+DCL GKQ RD+FPK
Sbjct: 256 HSVTKDKMHLWHCRYGHLSFQGLNTLYQQYMVYGLPMMKAPTNLCQDCLIGKQSRDSFPK 315

Query: 190 ESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKS 369
           +S WRA++VLQL+H+DICGPI P+SNSKKRYL TFIDDFSRKTW+YFLI KSEA  +FK 
Sbjct: 316 KSNWRATQVLQLIHADICGPITPISNSKKRYLLTFIDDFSRKTWIYFLIAKSEALSIFKI 375

Query: 370 YKSRVEKETGSYLKCLRTDRGGEFTSHE 453
           +K  VEKE  S ++ LRTDRGGEFT  E
Sbjct: 376 FKVHVEKEANSLIRSLRTDRGGEFTLQE 403


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  217 bits (552), Expect = 5e-65
 Identities = 99/158 (62%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
 Frame = +1

Query: 19  TEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQ-LKDSSKVCEDCLKGKQRRDAFPKES 195
           T+D + LWH RY HLS  GL+ILQ K MV+GLP  L  + KVCEDC+KGKQ RD  PK+S
Sbjct: 118 TQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKKS 177

Query: 196 TWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYK 375
            WRA + L+L+H+DICGPI P SNS+KRY   FIDD++RK W+YFL EKSEAF  F+ +K
Sbjct: 178 QWRAKQKLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCFK 237

Query: 376 SRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           + VEKE+G  +KCLRTDRGGEFTS EF +FC++ GI+R
Sbjct: 238 NLVEKESGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKR 275


>gb|PNX69528.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 223

 Score =  207 bits (526), Expect = 7e-65
 Identities = 95/155 (61%), Positives = 117/155 (75%)
 Frame = +1

Query: 25  DQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKESTWR 204
           +  QLWH RYGHLSF G+ IL  K MV+GLP +K+  + C+ C+KGKQ+R++ PK+S  R
Sbjct: 25  NDAQLWHQRYGHLSFKGINILALKKMVQGLPYVKEPEQKCDSCMKGKQQRESMPKKSLXR 84

Query: 205 ASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKSRV 384
           ASE LQLVHSDICGPINP SN KKRY  TFIDD SRKTW YFL E SEAF+ F+ +K+ V
Sbjct: 85  ASEKLQLVHSDICGPINPESNGKKRYFITFIDDLSRKTWTYFLSENSEAFIAFQKFKAMV 144

Query: 385 EKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           E ET   ++CLRTDRGGE+TS  F ++C   GI+R
Sbjct: 145 ENETKLKIQCLRTDRGGEYTSTAFNEYCDVQGIKR 179


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  209 bits (532), Expect = 8e-65
 Identities = 95/156 (60%), Positives = 116/156 (74%)
 Frame = +1

Query: 22  EDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKESTW 201
           ED   +WHCRYGHL+F GL  L ++ MVKGLP LKDS+++C DC+  K  RD+ PK ++W
Sbjct: 91  EDIEHIWHCRYGHLNFKGLVTLAKRTMVKGLPILKDSAELCPDCVISKHHRDSIPKTASW 150

Query: 202 RASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKSR 381
           RAS  L+L+HSDICGPINP SN   RY  TF DDFSRKTW Y L  KS AF +F+ +K+ 
Sbjct: 151 RASSKLELIHSDICGPINPSSNGGCRYFITFTDDFSRKTWTYPLKNKSSAFEVFRKFKAL 210

Query: 382 VEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
           VEKE    +KCLRTDRGGEFTS +F DFC E+GI+R
Sbjct: 211 VEKELDHQIKCLRTDRGGEFTSSQFNDFCSEHGIKR 246


>gb|KYP73784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 395

 Score =  211 bits (536), Expect = 3e-64
 Identities = 93/157 (59%), Positives = 119/157 (75%)
 Frame = +1

Query: 19  TEDQTQLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAFPKEST 198
           +E +TQLWH R+GHL++ GL  L  K MV G+P LK    +C  CL GKQ RD+ P +S+
Sbjct: 22  SEKKTQLWHSRFGHLNYKGLSTLASKQMVLGIPSLKSPKTICTTCLVGKQHRDSIPMQSS 81

Query: 199 WRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMFKSYKS 378
           WRAS  LQL+H+DICGPI+P S+S KRY+ +FIDD+SRK W+YFL EKSE  ++FKS+K+
Sbjct: 82  WRASTKLQLIHADICGPISPSSHSNKRYILSFIDDYSRKAWIYFLHEKSEPIIVFKSFKA 141

Query: 379 RVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 489
            VEKE G+Y+ CLR D+GGEFTS EF+DFC   GI R
Sbjct: 142 CVEKEAGTYITCLRIDKGGEFTSKEFIDFCINQGISR 178