BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00039080
         (655 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   242   6e-77
gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposo...   236   7e-75
gb|PNX66338.1| retrovirus-related Pol polyprotein from transposo...   235   1e-74
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   240   2e-73
gb|KYP31309.1| Retrovirus-related Pol polyprotein from transposo...   231   8e-73
gb|PNX89511.1| retrovirus-related Pol polyprotein from transposo...   236   8e-73
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   239   1e-72
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   236   5e-72
gb|KYP52266.1| Retrovirus-related Pol polyprotein from transposo...   227   1e-71
gb|PNX94541.1| hypothetical protein L195_g017718 [Trifolium prat...   232   1e-71
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   236   1e-71
gb|KYP32697.1| Retrovirus-related Pol polyprotein from transposo...   228   2e-71
gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon poly...   234   3e-71
gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposo...   227   5e-71
emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vit...   242   5e-71
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   244   5e-71
gb|KYP55753.1| Retrovirus-related Pol polyprotein from transposo...   224   1e-70
gb|PNX76161.1| retrovirus-related Pol polyprotein from transposo...   231   2e-70
gb|PNX59503.1| retrovirus-related Pol polyprotein from transposo...   227   3e-70
gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposo...   226   3e-70

>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 293

 Score =  242 bits (618), Expect = 6e-77
 Identities = 116/197 (58%), Positives = 150/197 (76%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           ++P++  TL+    EP SL++AL S  WKTAM  EY+AL+KN+TWTLVPLP+++ +VGCK
Sbjct: 10  VRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVPLPSNRTVVGCK 69

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           WVY+IK++ DG+  + KARLVAKG+ Q  G DY ETFSPV+K +TIRV+ +L VT  W I
Sbjct: 70  WVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRVILTLDVTYHWPI 129

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           KQ+D+NNAFLNG LE+D+YM QP GFE  ++ LVCKL+KAIYGLKQAPRAWY +L + L 
Sbjct: 130 KQVDINNAFLNGFLEEDVYMMQPPGFEVSDKTLVCKLNKAIYGLKQAPRAWYDRLTKTLL 189

Query: 109 QLGF*FSQADNSLFFRK 59
             GF  S+ D SL   K
Sbjct: 190 GFGFVQSRCDPSLLIYK 206


>gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 269

 Score =  236 bits (602), Expect = 7e-75
 Identities = 110/194 (56%), Positives = 147/194 (75%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           +KPR+  TL+   +EP + ++AL +  W  AM+TEYNAL+ N TW+LVPLP  +  +GCK
Sbjct: 10  VKPRLQPTLLLTHVEPKTTKQALSNPTWSAAMQTEYNALLHNDTWSLVPLPPHRTAIGCK 69

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           WV+++K++ +G+  + KARLVAKG+ Q  GFDY ETFSPV+K VT+R++ +L +T  W I
Sbjct: 70  WVFRVKENPNGTVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPI 129

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           +QLDVNNAFLNG LE+++YM QP GFE  +++LVCKL KAIYGLKQAPRAW+ KLK  L 
Sbjct: 130 QQLDVNNAFLNGTLEEEVYMTQPPGFEASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLL 189

Query: 109 QLGF*FSQADNSLF 68
           QL F  S+ D SLF
Sbjct: 190 QLNFYASKCDPSLF 203


>gb|PNX66338.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 258

 Score =  235 bits (600), Expect = 1e-74
 Identities = 108/200 (54%), Positives = 145/200 (72%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           +LKP+ F       IEP +++ AL    W  AM+ EY AL  N TW+LVPLP  K+ +GC
Sbjct: 9   NLKPKTFLAS----IEPTNIKNALADPHWLKAMQAEYKALQDNNTWSLVPLPPHKKAIGC 64

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW++++K++ DGS  + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W 
Sbjct: 65  KWIFRVKENPDGSINKYKARLVAKGFHQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWS 124

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+D+NNAFLNG+L++++YM QP GFE  ++ LVCKL KA+YGLKQAPRAWY +L Q L
Sbjct: 125 VQQIDINNAFLNGLLQEEVYMTQPTGFENSDKTLVCKLHKALYGLKQAPRAWYERLTQTL 184

Query: 112 QQLGF*FSQADNSLFFRKTN 53
            Q+GF  S+ D SL     N
Sbjct: 185 LQMGFIKSKCDPSLLVHHQN 204


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score =  240 bits (612), Expect = 2e-73
 Identities = 108/194 (55%), Positives = 147/194 (75%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           HLKP+ F+T    I EP +++ AL   +W  AM+TE+ AL  N TW+LVPLP  K+ +GC
Sbjct: 82  HLKPKAFTT----IFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKKAIGC 137

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW+++IK++ DG+  + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W 
Sbjct: 138 KWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWP 197

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+D+NNAFLNG+L +++YM QP GFE  ++ LVCKL K++YGLKQAPRAWY +L Q L
Sbjct: 198 VQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTL 257

Query: 112 QQLGF*FSQADNSL 71
            Q+GF  S+ D SL
Sbjct: 258 LQMGFIASKCDPSL 271


>gb|KYP31309.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 274

 Score =  231 bits (589), Expect = 8e-73
 Identities = 109/192 (56%), Positives = 144/192 (75%)
 Frame = -1

Query: 643 PRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKWV 464
           PR+  +L     EP ++++AL    W +AM+ EYNALM N TW LV LP+D++ VGCKWV
Sbjct: 12  PRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWV 71

Query: 463 YKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIKQ 284
           +++K++ADGS  + KARLVAKG+ Q  GFD+ ETFSPV+K +TIR++ +L +T  W + Q
Sbjct: 72  FRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILTLALTNNWNLFQ 131

Query: 283 LDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQQL 104
           LDVNNAFLNG LE+ IYM QP GFE G++ LVCKL+KA+YGLKQAPR W++KLK  L + 
Sbjct: 132 LDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQWFNKLKLTLTRF 191

Query: 103 GF*FSQADNSLF 68
           GF  S+ D SLF
Sbjct: 192 GFQASKCDPSLF 203


>gb|PNX89511.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 430

 Score =  236 bits (602), Expect = 8e-73
 Identities = 106/194 (54%), Positives = 148/194 (76%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           +LKP+ F+T    ++EP +++ AL   +W  AM TE+ AL  N TW+LVPLP  K+ +GC
Sbjct: 225 NLKPKAFTT----VLEPTTVKSALADPKWLQAMHTEFKALTDNNTWSLVPLPPHKKAIGC 280

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW+++IK++ DG+  + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W 
Sbjct: 281 KWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTHKWV 340

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+D+NNAFLNG+L +++YM+QP GFE  ++ LVCKL K++YGLKQAPRAWY +L Q L
Sbjct: 341 VQQIDINNAFLNGILHEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTL 400

Query: 112 QQLGF*FSQADNSL 71
            Q+GF  S+ D SL
Sbjct: 401 LQMGFIASKCDPSL 414


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  239 bits (609), Expect = 1e-72
 Identities = 108/200 (54%), Positives = 148/200 (74%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           +LKP+ F+      I P +++ AL    W  AM+ EY ALM NKTW+LVPLP  ++ +GC
Sbjct: 9   NLKPKTFTAS----IAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLPPHRKAIGC 64

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW++++K++ DGS  + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W 
Sbjct: 65  KWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWS 124

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+D+NNAFLNG+L++++YM QP GFE  +++LVCKL KA+YGLKQAPRAWY +L Q L
Sbjct: 125 VQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAWYDRLTQTL 184

Query: 112 QQLGF*FSQADNSLFFRKTN 53
            Q+GF  S+ D SL     N
Sbjct: 185 LQMGFTKSRCDPSLLVHHQN 204


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 499

 Score =  236 bits (602), Expect = 5e-72
 Identities = 107/194 (55%), Positives = 146/194 (75%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           HLK + F+T    I EP +++ AL   +W  AM+TE+ AL  N TW+LVPLP  K+ +GC
Sbjct: 66  HLKLKAFTT----IFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKKAIGC 121

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW+++IK++ DG+  + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W 
Sbjct: 122 KWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWP 181

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+D+NNAFLNG+L +++YM QP GFE  ++ LVCKL K++YGLKQAPRAWY +L Q L
Sbjct: 182 VQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTL 241

Query: 112 QQLGF*FSQADNSL 71
            Q+GF  S+ D SL
Sbjct: 242 LQMGFIASKCDPSL 255


>gb|KYP52266.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 244

 Score =  227 bits (579), Expect = 1e-71
 Identities = 107/194 (55%), Positives = 146/194 (75%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           +KPR+  TL+   +EP + ++AL +  W  AM+ EYNAL+ N TWTLV LP+++ ++GCK
Sbjct: 10  VKPRLQPTLLLIDVEPKNTKQALANDTWLAAMKQEYNALLDNGTWTLVSLPSNRTVIGCK 69

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           W++++K++ DG+  + KARLVAKG+ Q  G+DY ETFSPVVK VTIR++ +L +T  W I
Sbjct: 70  WIFRVKENPDGTIHKYKARLVAKGFHQQYGYDYNETFSPVVKPVTIRIILTLALTHHWPI 129

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           +QLDVNNA +NG LE+++YM QP GFE  +++LVCKL K IYGLKQAPRAW+ KLK  L 
Sbjct: 130 QQLDVNNALINGNLEEEVYMSQPLGFESSDKNLVCKLHKEIYGLKQAPRAWFDKLKATLF 189

Query: 109 QLGF*FSQADNSLF 68
           QL F  S+ D SLF
Sbjct: 190 QLNFQISKCDPSLF 203


>gb|PNX94541.1| hypothetical protein L195_g017718 [Trifolium pratense]
          Length = 397

 Score =  232 bits (592), Expect = 1e-71
 Identities = 108/193 (55%), Positives = 146/193 (75%)
 Frame = -1

Query: 628 TLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKWVYKIKK 449
           T++   IEP S+++AL S  W TAM+ EY+AL++N TWTLV  PA K+ +GCKWV+++K+
Sbjct: 175 TVLVTHIEPTSVKQALQSSHWVTAMKEEYDALLRNNTWTLVAPPAHKQPIGCKWVFRVKE 234

Query: 448 HADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIKQLDVNN 269
           + DG+  + KARLVAKG+ Q  G D+ ETFSPVVK VT+R V ++ V+  W I+Q+DVNN
Sbjct: 235 NPDGTIHKYKARLVAKGFHQQAGSDFTETFSPVVKPVTVRTVLTMAVSNKWPIQQIDVNN 294

Query: 268 AFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQQLGF*FS 89
            FLNG+LE+++YM+QPHGFE  ++ LVCKL+KA+YGLKQAPRAW+ +LK  L   GF  S
Sbjct: 295 GFLNGILEEEVYMQQPHGFEASDKTLVCKLNKALYGLKQAPRAWFDRLKAALIGYGFKAS 354

Query: 88  QADNSLFFRKTNT 50
           + D SLF  KT T
Sbjct: 355 KCDPSLFMIKTGT 367


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  236 bits (602), Expect = 1e-71
 Identities = 107/194 (55%), Positives = 149/194 (76%)
 Frame = -1

Query: 652 HLKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGC 473
           +LKP+VF+  +    EP +++ AL   +W  AM+ EY ALM N TW+LVPLP  K+ +GC
Sbjct: 9   NLKPKVFTVSL----EPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLPPHKKAIGC 64

Query: 472 KWVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWK 293
           KW++++K+++DG+  + KARLVAKG+ QTPGFD+ ETFSPV+K +TIRV+ +L VT  W 
Sbjct: 65  KWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILTLAVTYKWP 124

Query: 292 IKQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVL 113
           ++Q+DVNNAFLNG L++++YM+QP GFE  ++ LVCKL K++YGLKQAPRAWY +L Q L
Sbjct: 125 VQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQAL 184

Query: 112 QQLGF*FSQADNSL 71
            Q+GF  S+ D SL
Sbjct: 185 LQMGFVTSKCDPSL 198


>gb|KYP32697.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 303

 Score =  228 bits (582), Expect = 2e-71
 Identities = 112/200 (56%), Positives = 143/200 (71%)
 Frame = -1

Query: 646 KPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKW 467
           KP+VF        EP ++ +AL +K WK AM+ EYNALMKN TW LV LP  ++ + CKW
Sbjct: 11  KPKVFLATS----EPTTVVQALETKHWKQAMQDEYNALMKNYTWDLVSLPPGRKAITCKW 66

Query: 466 VYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIK 287
           ++K K   DGS  R KARLVA+G+ Q  G DY +TFSPVV+ V+IRVV +L V+ GW I 
Sbjct: 67  IFKNKYKQDGSILRHKARLVARGFNQQQGIDYTDTFSPVVRPVSIRVVLALAVSQGWPIH 126

Query: 286 QLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQQ 107
           Q+D++NAFLNG L+++IYM QP GF KGN + VCKL KAIYGLKQAPRAW+ KL   L Q
Sbjct: 127 QIDMDNAFLNGELQEEIYMLQPQGFHKGNSNTVCKLRKAIYGLKQAPRAWFQKLTLTLIQ 186

Query: 106 LGF*FSQADNSLFFRKTNTS 47
           LGF  +++DNSLF   + T+
Sbjct: 187 LGFKQAKSDNSLFISTSRTT 206


>gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon polyprotein, 5'-partial, partial
           [Oryza sativa Japonica Group]
          Length = 491

 Score =  234 bits (596), Expect = 3e-71
 Identities = 112/182 (61%), Positives = 141/182 (77%), Gaps = 1/182 (0%)
 Frame = -1

Query: 607 EPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKWVYKIKKHADGSFA 428
           EP +L EAL+ K WK AM++EY ALMKNKTW LVP  +D+ ++ CKWVYKIK+ ADGS  
Sbjct: 216 EPQNLHEALNDKNWKHAMDSEYTALMKNKTWHLVPAKSDRNVIDCKWVYKIKRKADGSLD 275

Query: 427 RCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIKQLDVNNAFLNGVL 248
           R KARLVAKG+ Q  G DY +TFSPVVK  TIRV+ S+ V+ GW ++QLDV+NAFL+G+L
Sbjct: 276 RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRVILSIAVSRGWSLRQLDVSNAFLHGIL 335

Query: 247 EQDIYMEQPHGFEKGN-QHLVCKLSKAIYGLKQAPRAWYSKLKQVLQQLGF*FSQADNSL 71
           E+++YM QP G+E  +  + VCKL KA+YGLKQAPR WYS+L   LQ+LGF  S+AD SL
Sbjct: 336 EEEVYMRQPLGYEVSSLPNHVCKLDKALYGLKQAPRVWYSRLSTKLQELGFQASKADTSL 395

Query: 70  FF 65
           FF
Sbjct: 396 FF 397


>gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 282

 Score =  227 bits (578), Expect = 5e-71
 Identities = 105/194 (54%), Positives = 143/194 (73%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           +KPR+  TL+   +EP ++++AL +  W   M+TEYNAL+ N TW+LV LP  +  +GCK
Sbjct: 10  VKPRLQPTLLLTHVEPKTIKQALSNSTWSAVMQTEYNALLSNDTWSLVHLPPHRTAIGCK 69

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           WV+ IK++ DG+  + KARLV KG+ Q  GFDY ETF+PV+K VTIR++ +L +T  W +
Sbjct: 70  WVFCIKENPDGTVQKYKARLVTKGFNQQFGFDYNETFAPVIKLVTIRLILTLALTHHWPL 129

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           +QLD+NNAFLNG L++++YM QP GFE  +++LVCKL KAIYGLKQAPRAW+ KLK  L 
Sbjct: 130 QQLDINNAFLNGTLDEEVYMTQPPGFEASDKNLVCKLHKAIYGLKQAPRAWFEKLKSTLL 189

Query: 109 QLGF*FSQADNSLF 68
           Q  F  S+ D SLF
Sbjct: 190 QFNFQASKCDPSLF 203


>emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vitis vinifera]
          Length = 955

 Score =  242 bits (618), Expect = 5e-71
 Identities = 122/203 (60%), Positives = 155/203 (76%), Gaps = 3/203 (1%)
 Frame = -1

Query: 646  KPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKW 467
            KP+V+ T+  N+ EP + QEA+   +WK AM+ E+ ALMKNKTW+LV LP ++  VGC+W
Sbjct: 525  KPKVY-TVDLNVEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRW 583

Query: 466  VYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIK 287
            V+K+K++ DGS +R KARLVAKGY+Q PGFD+ ETFS VVK  TIRVV  +VV+  W I+
Sbjct: 584  VFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSXVVKPTTIRVVLXIVVSQSWFIR 643

Query: 286  QLDVNNAFLNGVLEQDIYMEQPHGFE-KGNQH--LVCKLSKAIYGLKQAPRAWYSKLKQV 116
            QLDVNNAFLNG L++++YM+QP GF+ K NQ   LVCKL KA+YGLKQAPRAW+ KLK  
Sbjct: 644  QLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKIS 703

Query: 115  LQQLGF*FSQADNSLFFRKTNTS 47
            LQQ GF  ++ D SLF R TN S
Sbjct: 704  LQQFGFSSTKXDQSLFVRFTNCS 726


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  244 bits (623), Expect = 5e-71
 Identities = 122/203 (60%), Positives = 156/203 (76%), Gaps = 3/203 (1%)
 Frame = -1

Query: 646  KPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKW 467
            KP V+ T+  N+ EP + QEA+   +WK AM+ E+ ALMKNKTW+LV LP ++  VGC+W
Sbjct: 734  KPXVY-TVDLNVEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRW 792

Query: 466  VYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIK 287
            V+K+K++ DGS +R KARLVAKGY+Q PGFD+ ETFSPVVK  TIRVV ++ V+  W I+
Sbjct: 793  VFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVVLAIAVSQSWCIR 852

Query: 286  QLDVNNAFLNGVLEQDIYMEQPHGFE-KGNQH--LVCKLSKAIYGLKQAPRAWYSKLKQV 116
            QLDVNNAFLNG L++++YM+QP GF+ K NQ   LVCKL KA+YGLKQAPRAW+ KLK  
Sbjct: 853  QLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKIS 912

Query: 115  LQQLGF*FSQADNSLFFRKTNTS 47
            LQQ GF  +++D SLF R TN S
Sbjct: 913  LQQFGFSSTKSDQSLFVRFTNCS 935


>gb|KYP55753.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 218

 Score =  224 bits (570), Expect = 1e-70
 Identities = 102/194 (52%), Positives = 142/194 (73%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           +KPR+  TL+   +EP + ++AL +  W  AM+ EYNAL++N TW+LV LP  +  +GCK
Sbjct: 10  VKPRLQPTLLLTHVEPKTFKQALSNSTWSAAMQIEYNALLRNGTWSLVRLPPSRTAIGCK 69

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           WV+++K++ DG+  + KA LVAKG+ Q  GFDY ETF+PV+K VT+R++ +L +T  W +
Sbjct: 70  WVFRVKENPDGTVQKYKAHLVAKGFNQQFGFDYNETFAPVIKPVTLRLILTLALTHHWPL 129

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           +QLD+NNAFLNG L++++YM QP GFE  ++  VCKL KAIYGLKQAPRAW+ KLK  L 
Sbjct: 130 QQLDINNAFLNGTLDEEVYMTQPPGFETSDKKFVCKLHKAIYGLKQAPRAWFEKLKLTLL 189

Query: 109 QLGF*FSQADNSLF 68
           Q  F  S+ D SLF
Sbjct: 190 QFNFQASKCDPSLF 203


>gb|PNX76161.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 459

 Score =  231 bits (589), Expect = 2e-70
 Identities = 102/181 (56%), Positives = 139/181 (76%)
 Frame = -1

Query: 613 IIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKWVYKIKKHADGS 434
           I EP +++ AL   +W  AM+TE+ AL  N TW+LVPLP  K+ +GCKW+++IK++ DG+
Sbjct: 6   IFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKKAIGCKWIFRIKENPDGT 65

Query: 433 FARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIKQLDVNNAFLNG 254
             + KARLVAKG+ QTPGFD+ ETFSPV+K VTIR++ +L VT  W ++Q+D+NNAFLNG
Sbjct: 66  INKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWPVQQIDINNAFLNG 125

Query: 253 VLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQQLGF*FSQADNS 74
           +L +++YM QP GFE  ++ LVCKL K++YGLKQAPRAWY +L Q L Q+GF  S+ D S
Sbjct: 126 ILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTLLQMGFIASKCDPS 185

Query: 73  L 71
           L
Sbjct: 186 L 186


>gb|PNX59503.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 340

 Score =  227 bits (578), Expect = 3e-70
 Identities = 107/199 (53%), Positives = 146/199 (73%)
 Frame = -1

Query: 649 LKPRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCK 470
           ++PR+  TL+   +EP   ++A+   +W  AM+ EY+AL+ N TW+LV LP D+  +GCK
Sbjct: 126 VQPRLNPTLLLTHVEPTGYKQAMQHPQWLQAMKCEYDALLTNNTWSLVTLPEDRHPIGCK 185

Query: 469 WVYKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKI 290
           WV+++K++ DG+  + KARLVAKG+ Q  GFDY ETFSPVVK VT+R V +L VT  W I
Sbjct: 186 WVFRLKQNPDGTINKYKARLVAKGFHQKHGFDYTETFSPVVKPVTVRTVLTLAVTNKWCI 245

Query: 289 KQLDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQAPRAWYSKLKQVLQ 110
           +QLDVNNAFLNG+L++++YM QP GFE  ++ LVCKL KA+YGLKQAPRAW+ +L+  L 
Sbjct: 246 QQLDVNNAFLNGLLDEEVYMVQPPGFEATDKTLVCKLQKALYGLKQAPRAWFERLRSALT 305

Query: 109 QLGF*FSQADNSLFFRKTN 53
           +LGF  S+ D SLF    N
Sbjct: 306 KLGFVPSKCDPSLFTLHAN 324


>gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 324

 Score =  226 bits (576), Expect = 3e-70
 Identities = 109/194 (56%), Positives = 144/194 (74%), Gaps = 2/194 (1%)
 Frame = -1

Query: 643 PRVFSTLMQNIIEPCSLQEALHSKEWKTAMETEYNALMKNKTWTLVPLPADKRLVGCKWV 464
           PR+  +L     EP ++++AL    W +AM+ EYNALM N TW LV LP+D++ VGCKWV
Sbjct: 12  PRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWV 71

Query: 463 YKIKKHADGSFARCKARLVAKGYTQTPGFDYLETFSPVVKQVTIRVVFSLVVTLGWKIKQ 284
           +++K++ADGS  + KARLVAKG+ Q  GFD+ ETFSPV+K +TIR++ +L +T  W + Q
Sbjct: 72  FRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILTLALTNNWNLFQ 131

Query: 283 LDVNNAFLNGVLEQDIYMEQPHGFEKGNQHLVCKLSKAIYGLKQA--PRAWYSKLKQVLQ 110
           LDVNNAFLNG LE+ IYM QP GFE G++ LVCKL+KA+YGLKQA  PR W++KLK  L 
Sbjct: 132 LDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPPPRQWFNKLKLTLT 191

Query: 109 QLGF*FSQADNSLF 68
           + GF  S+ D SLF
Sbjct: 192 RFGFQASKCDPSLF 205