BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00039035
         (1262 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   576   0.0  
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   563   0.0  
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   558   0.0  
gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]   528   0.0  
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   556   0.0  
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   535   e-176
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            531   e-174
gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]   521   e-173
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   514   e-172
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   522   e-170
gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinen...   507   e-165
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   520   e-165
gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]   506   e-164
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   504   e-163
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   488   e-163
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   502   e-163
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   495   e-160
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt...   499   e-160
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               493   e-159
emb|CAN74050.1| hypothetical protein VITISV_040588 [Vitis vinifera]   484   e-158

>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  576 bits (1485), Expect = 0.0
 Identities = 277/425 (65%), Positives = 335/425 (78%), Gaps = 5/425 (1%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETG  I+ LRTDRGGEFTS EFT+FC++NGI RQLTAAYTPQQNGVAERKNRTIMNM
Sbjct: 302  VEKETGAFIRSLRTDRGGEFTSNEFTSFCNENGILRQLTAAYTPQQNGVAERKNRTIMNM 361

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS K+IPK+FWPEA+NW VH+LNRSPTLAVKNKTPEEAWSG KPSV HFRIFGC+ 
Sbjct: 362  VRSMLSEKQIPKTFWPEAVNWTVHVLNRSPTLAVKNKTPEEAWSGRKPSVDHFRIFGCIS 421

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVH+PD  R KLD KS++ + LGVSEESKAYRL+DPIS+KIIISRDVVFEED  W WD S
Sbjct: 422  HVHVPDHKRVKLDAKSLRCILLGVSEESKAYRLFDPISQKIIISRDVVFEEDQQWKWDNS 481

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
            H+  I ADL W  ++E      GNE  P                N   +++ ++  G+++
Sbjct: 482  HEPAILADLEWESDEETDTEDDGNEEEPEAGEDM---------GNSESNDSDSFENGETT 532

Query: 721  ---SATREQRLRSQPRWMRDYESGEGLSDEE--DIANLVMFATNDPILFEEAIKDSKWRT 885
               S   E R R  P WM+DYE+G GLSDEE  ++A L +F  +DP  +++A++  KWR 
Sbjct: 533  YEDSTPHEGRTRRPPTWMQDYETGAGLSDEESVNLAQLALFTDSDPTTYDDAVRSEKWRL 592

Query: 886  TMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHG 1065
             M+ EI+AIE+N+TWELT+LP+G K +GVKW++KTKLNENGEV+KYKARLVAKGY++++G
Sbjct: 593  AMNQEIEAIERNNTWELTDLPSGGKTIGVKWIFKTKLNENGEVDKYKARLVAKGYSQQYG 652

Query: 1066 IDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKG 1245
             DY EVFAPVARLET+R+VISLAAQK WMI+QLDVKSAFLHGE+ EE F+EQPPGY++KG
Sbjct: 653  XDYVEVFAPVARLETIRIVISLAAQKDWMIYQLDVKSAFLHGEIHEEXFVEQPPGYEQKG 712

Query: 1246 AEQKV 1260
             E KV
Sbjct: 713  KESKV 717


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  563 bits (1451), Expect = 0.0
 Identities = 275/421 (65%), Positives = 327/421 (77%), Gaps = 1/421 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETG  I+CLRTDRGGEFTS EF TFCS +GI RQLTAAYTPQQNGVAERKNRTIMNM
Sbjct: 266  VEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNM 325

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS K++PK FWPEA+NW++HILNRSPTLAVK+ TPEEAWSG KP+V +FR+FGC+ 
Sbjct: 326  VRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIKPAVHYFRVFGCIA 385

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVHIP+  RKKLDDKS K V LGVS+ESKAYRLYDPIS++I++SRDVVFEED NWDW ++
Sbjct: 386  HVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDENWDWGRT 445

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             +EV    L+W D +EE N +  +E                     S++EN      +  
Sbjct: 446  AEEVRLDVLDWSDGEEEENESAQSEEENEFAQ--------------SEEENVNNDDAEEE 491

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFA-TNDPILFEEAIKDSKWRTTMDV 897
                E R R QP WM+DY SGEGLS+EE+  N+VMF    DP  FEEA K +KW+  MD 
Sbjct: 492  EILEEGRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAMDQ 551

Query: 898  EIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYT 1077
            EI+AIE+N TWELT LP GAK +GVKW++KTKLNENGEVEK KARLVAKGY +++GIDYT
Sbjct: 552  EIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYT 611

Query: 1078 EVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQK 1257
            EVFAPVAR +T+R+VI+LAA+KGW ++QLDVKSAFLHGEL+E VFI+QP GY K+G E K
Sbjct: 612  EVFAPVARWDTIRMVIALAAKKGWKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELK 671

Query: 1258 V 1260
            V
Sbjct: 672  V 672


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  558 bits (1437), Expect = 0.0
 Identities = 273/421 (64%), Positives = 325/421 (77%), Gaps = 1/421 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETG  I+CLRTDRGGEFTS EF TFCS +GI RQLTAAYTPQQNGVAERKNRTIMNM
Sbjct: 547  VEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNM 606

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS K++PK FWPEA+NW++HILNRSPTLAVK+ TPEEAWSG KP+V +FR+FGC+ 
Sbjct: 607  VRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIKPAVHYFRVFGCIA 666

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVHIP+  RKKLDDKS K V LGVS+ESKAYRLYDPIS++I++SRDVVFEED +WDW ++
Sbjct: 667  HVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDESWDWGRT 726

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             +E     L+W D +EE N +                         S++EN      +  
Sbjct: 727  AEEERLDVLDWSDGEEEENESA-----------------------QSEEENVNNDDAEEE 763

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMF-ATNDPILFEEAIKDSKWRTTMDV 897
                E R R QP WM+DY SGEGLS+EE+  N+VMF +  DP  FEEA K +KW+  MD 
Sbjct: 764  EILEEGRTRLQPIWMQDYVSGEGLSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAMDQ 823

Query: 898  EIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYT 1077
            EI+AIE+N TWELT LP GAK +GVKW++KTKLNENGEVEK KARLVAKGY +++GIDYT
Sbjct: 824  EIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYT 883

Query: 1078 EVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQK 1257
            EVFAPVAR +T+R+VI+LAAQKGW ++QLDVKSAFLHGEL+E VFI+QP GY K+G E K
Sbjct: 884  EVFAPVARWDTIRMVIALAAQKGWKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELK 943

Query: 1258 V 1260
            V
Sbjct: 944  V 944


>gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 415

 Score =  528 bits (1360), Expect = 0.0
 Identities = 261/426 (61%), Positives = 327/426 (76%), Gaps = 6/426 (1%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKET  SI+CLRTDRGGEFTS EF +FCS +GI+RQLTAA+TPQQNGVAERKN+TIMNM
Sbjct: 2    VEKETRASIQCLRTDRGGEFTSHEFNSFCSSHGIKRQLTAAFTPQQNGVAERKNQTIMNM 61

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VR MLS K +PK  W EA+NWAVHILNRSPTLAVK+KTPEEAWS  KP+V + ++FGC+ 
Sbjct: 62   VRCMLSEKHLPKFLWGEAVNWAVHILNRSPTLAVKDKTPEEAWSDIKPAVHYLKVFGCVA 121

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVHIP+  RKKLD KS + V LG+S+ESKAYRL+DP +K+I+IS+DV+FEE+  WDW++S
Sbjct: 122  HVHIPEAKRKKLDAKSFRCVMLGISDESKAYRLFDPTTKRIVISKDVIFEENECWDWERS 181

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             +++    L+WG+++EE N                            + E      G SS
Sbjct: 182  PEQMKPDLLDWGESEEERN---------------------------ENTEEVREGMGSSS 214

Query: 721  SATREQ-----RLRSQPRWMRDYESGEGLSDEEDIANLVMFAT-NDPILFEEAIKDSKWR 882
            S + E+     R+R  P WM+DY SGE  S+EE I NLVMF   +DP  FEEA+K  KWR
Sbjct: 215  SLSSEEAPIEGRVRRPPGWMQDYTSGEEFSEEE-IQNLVMFTVASDPTTFEEAVKSEKWR 273

Query: 883  TTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKH 1062
              M+ E++AIEKN+TWELT+LPTGAK +G+KW++KTKLNENGEVEKYKARLVAKGY++++
Sbjct: 274  NAMNNEMEAIEKNNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQY 333

Query: 1063 GIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKK 1242
            G+DYTEVFAPVAR +T+R+VI+LAAQKGW ++QLDVKSAFLHGEL+E+VF++QP GY KK
Sbjct: 334  GVDYTEVFAPVARWDTIRMVIALAAQKGWNVYQLDVKSAFLHGELNEQVFVDQPQGYVKK 393

Query: 1243 GAEQKV 1260
            G E KV
Sbjct: 394  GDELKV 399


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  556 bits (1434), Expect = 0.0
 Identities = 272/421 (64%), Positives = 325/421 (77%), Gaps = 1/421 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETG  I+CLRTDRGGEFTS EF TFCS +GI RQLTAAYTPQQNGVAERKNRTIMNM
Sbjct: 545  VEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNM 604

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS K++PK FWPEA+NW++HILNRSPTLAVK+ TPEEAWSG KP V +F++FGC+ 
Sbjct: 605  VRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIKPVVHYFKVFGCIA 664

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVHIP+  RKKLD+KS K V LGVSEESKAYRLYDPIS++I++SRDVVFEED +W+W ++
Sbjct: 665  HVHIPEAKRKKLDNKSYKCVLLGVSEESKAYRLYDPISERIVVSRDVVFEEDESWEWGRT 724

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             +EV    L+W D +EE N +  +E                   N  D E       +  
Sbjct: 725  AEEVRLDVLDWSDGEEEENESAQSEE------ENEYAQSEEENVNNDDAE-------EEE 771

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMF-ATNDPILFEEAIKDSKWRTTMDV 897
                E R R QP WM+DY SGEGLS+EE+  N+VMF +  DP  FEEA K +KW+  MD 
Sbjct: 772  EILEEGRTRMQPVWMQDYVSGEGLSEEEETNNVVMFTSVTDPATFEEAFKSAKWKAAMDQ 831

Query: 898  EIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYT 1077
            EI+AIE+N TWELT LP GAK +GVKW++KTKLNENGEV+K KARLVAKGY +++GIDYT
Sbjct: 832  EIEAIERNHTWELTTLPAGAKTIGVKWIFKTKLNENGEVDKCKARLVAKGYAQQYGIDYT 891

Query: 1078 EVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQK 1257
            EVFAPVAR +T+R+VI+LAAQKGW ++QLDVKSAFLHGEL+E +FI+QP GY KKG E K
Sbjct: 892  EVFAPVARWDTIRMVIALAAQKGWKVYQLDVKSAFLHGELTEAIFIDQPQGYVKKGDELK 951

Query: 1258 V 1260
            V
Sbjct: 952  V 952


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  535 bits (1378), Expect = e-176
 Identities = 264/420 (62%), Positives = 309/420 (73%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKET   I+ L TDRGGEFTS EFT FC  NGIRRQLTAAYTPQQN V ERKNRTIMNM
Sbjct: 527  VEKETNSFIRALXTDRGGEFTSXEFTNFCDVNGIRRQLTAAYTPQQNXVXERKNRTIMNM 586

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSM+S KKIPK FWPEA+NW VH+LNRSPTLAV+NKTP EAWSG KPSV HFR+FGC+ 
Sbjct: 587  VRSMISEKKIPKPFWPEAVNWTVHVLNRSPTLAVQNKTPXEAWSGVKPSVEHFRVFGCIS 646

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVH+PD  R KLDDKS+  V LGVSE                   DVVFEE  NWDWDK+
Sbjct: 647  HVHVPDNKRTKLDDKSLSCVLLGVSEG------------------DVVFEEHKNWDWDKT 688

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
            +++ I  DL WGD +EE      NE G                    D+ +S     DSS
Sbjct: 689  YEKSIVCDLEWGDLEEEATMFDENEEGTESDLEADIEAE-------EDNFSSDSLTEDSS 741

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDVE 900
             ++  +R+R  P WMRDY+ GEGLS+E++ A+L MFA  DPI FE+A+K  KW+  MD+E
Sbjct: 742  PSSTAERIRRPPAWMRDYDIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLE 801

Query: 901  IKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTE 1080
            + AI KN TWELT LP G KK+GVKW+YKTK NENGEV+KYKARLVAKGYT++HG+DYTE
Sbjct: 802  LAAINKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKYKARLVAKGYTQQHGVDYTE 861

Query: 1081 VFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            VFAPVAR+ET+RLV++LAAQ+ W I+QLDVKSAFLHGEL+EEVF+EQP GY +KG EQKV
Sbjct: 862  VFAPVARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQKGHEQKV 921


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  531 bits (1367), Expect = e-174
 Identities = 264/434 (60%), Positives = 320/434 (73%), Gaps = 14/434 (3%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE+G  I  LRTDRGGEF S EF  FC   GI RQLTAAYTPQQNGVAERKNRTIMNM
Sbjct: 548  VEKESGAYITSLRTDRGGEFNSNEFEEFCKVQGISRQLTAAYTPQQNGVAERKNRTIMNM 607

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSML  KK+PK FWPEA+ W+VHILNR PTLAV+NKTPEEAWSG KP++ +FR+FGC+ 
Sbjct: 608  VRSMLVEKKVPKMFWPEAVKWSVHILNRCPTLAVQNKTPEEAWSGIKPTINYFRVFGCVA 667

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            H HIPD  R KLDDKS K V LGVS+ESKAY+LYDP+SKKIIIS+DV+FEED  W+WD +
Sbjct: 668  HAHIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKKIIISKDVIFEEDVCWNWDNN 727

Query: 541  HKEVIFADLNWGDNDE-------EPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSA 699
              E     L W ++ E       E N  VGN NG               G N  D  NS 
Sbjct: 728  KDERRVDVLEWKNDYENDIEEAIEGNEEVGN-NG-----NEEEHNNGNEGGNNDDTTNSI 781

Query: 700  YTGGDSSSATREQ-------RLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEE 858
             +   SS +  ++       R+R  P ++ DYE+GEGLSDE+++  ++M   +DP+ FEE
Sbjct: 782  ESNSSSSESHEDESPNMVEGRVRRPPSYLADYETGEGLSDEDNLNAMMMLTEDDPLSFEE 841

Query: 859  AIKDSKWRTTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLV 1038
            A K +KWR  M  EI++IEKN TWELT LP G K +GVKW+YKTKLNENG+++KYKARLV
Sbjct: 842  ARKSNKWRDAMKAEIESIEKNKTWELTILPNGIKPIGVKWIYKTKLNENGQIDKYKARLV 901

Query: 1039 AKGYTKKHGIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIE 1218
            AKGY +++G+DYTEVFAPVARL+T+RL+++LAAQ  W +FQLDVKSAFLHGEL+EEVF++
Sbjct: 902  AKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLDVKSAFLHGELNEEVFVK 961

Query: 1219 QPPGYKKKGAEQKV 1260
            QP GY+KKG E KV
Sbjct: 962  QPLGYEKKGEEDKV 975


>gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1017

 Score =  521 bits (1341), Expect = e-173
 Identities = 257/427 (60%), Positives = 314/427 (73%), Gaps = 7/427 (1%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKET LSIKCLRTDRGGEFTS EF  +C  NGI+RQLTAAYTPQQNGVAERKNRT+MNM
Sbjct: 243  VEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNM 302

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRS+L  K +P+ FW EA+NWA ++LNR PT +VK  TP EAW G KPSVGH R+FGC+ 
Sbjct: 303  VRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIA 362

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            + H+PD  R KL+DKS   V  GVSEESKAYRLYDP SK+IIISRDVVFEED  W+W+K 
Sbjct: 363  YAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEEDGQWNWEKR 422

Query: 541  HKEVIFADLNWGD--NDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGD 714
             +E    D  W D  ++E   +  GNE                  A G+++EN+     D
Sbjct: 423  SEEDNTFDTEWEDEKSEEREESTDGNEE-----ENATDSNEEENAAEGNEEENATDGNED 477

Query: 715  SSSAT--REQRLRSQPRWMRDYESGEGLSDEEDIANLVMFA---TNDPILFEEAIKDSKW 879
             ++A+   E R R  P WM DY SGEGLSDEE    LV+FA    +DP  F+EA+K+ KW
Sbjct: 478  ENAASPVSEHRNRRAPGWMNDYVSGEGLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKW 537

Query: 880  RTTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKK 1059
            R  MD E+K+IEKN TW+LT LP  A+K+GVKWVYKTKLNE GEVEKYKARLVAKGY ++
Sbjct: 538  RAAMDAEMKSIEKNGTWDLTELPKEARKIGVKWVYKTKLNELGEVEKYKARLVAKGYAQE 597

Query: 1060 HGIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKK 1239
            +G+DY EV+APVAR++TVR++++LAAQ+ W +FQLDVKSAFLHG+L+E V++EQP GY+ 
Sbjct: 598  YGVDYEEVYAPVARMDTVRMILALAAQRSWCVFQLDVKSAFLHGKLAENVYVEQPRGYEI 657

Query: 1240 KGAEQKV 1260
            K  E KV
Sbjct: 658  KNEEHKV 664


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 930

 Score =  514 bits (1325), Expect = e-172
 Identities = 260/424 (61%), Positives = 312/424 (73%), Gaps = 4/424 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEK T +S+K LRTD GGEFTS EF  F   +G++RQLTAAY+PQQNGVAERKNRTIMN+
Sbjct: 523  VEKATNMSLKGLRTDLGGEFTSREFNNFFHAHGVQRQLTAAYSPQQNGVAERKNRTIMNL 582

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS KK+PK+FWPEA+NWAVH+LN  PTLAVK KTPEEAWSG KPSV HFR+FGC+ 
Sbjct: 583  VRSMLSEKKVPKTFWPEAVNWAVHVLNHCPTLAVKEKTPEEAWSGIKPSVQHFRVFGCVS 642

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            + H+PD  R KLD KS+K V LG+S+ESKAYRLYDPIS++IIISRDVVF E+  W+W+ +
Sbjct: 643  YAHVPDNLRSKLDAKSLKCVLLGISDESKAYRLYDPISQRIIISRDVVFAENEAWEWN-N 701

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
            H+     +L W D+D+     V +E  P                  +  E S     D+S
Sbjct: 702  HESTTICELEWEDDDK-----VVSEESP------------VEDVADAQPEESLTINQDTS 744

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFAT----NDPILFEEAIKDSKWRTT 888
                E R R Q  W+RDY SGEGL DEE +     FA      +P+ FEEA+K  KWR  
Sbjct: 745  EGLMEGRSRRQSTWLRDYVSGEGLFDEEAVFYSAFFALYTAGAEPLNFEEAVKIEKWRNA 804

Query: 889  MDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGI 1068
            MD+EI+AIEKN TWEL + P GAK VGVKWVYKTKLNE G+V+K+KARLV KGY +++GI
Sbjct: 805  MDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGI 864

Query: 1069 DYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGA 1248
            DYTEVFAPVA +ETVRLVI+ AAQKGW I QLDVKSAFLHGEL+E+VF+EQP GY +KG 
Sbjct: 865  DYTEVFAPVACMETVRLVIAYAAQKGWAIHQLDVKSAFLHGELAEDVFVEQPRGYVQKGK 924

Query: 1249 EQKV 1260
            E+KV
Sbjct: 925  EEKV 928


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  522 bits (1344), Expect = e-170
 Identities = 245/420 (58%), Positives = 315/420 (75%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE  ++IKCLRTDRGGEF S EF  FC  +G++RQLT AYTPQQNGVAERKNRT+MNM
Sbjct: 544  VEKEAEMAIKCLRTDRGGEFNSNEFNDFCKQSGVKRQLTTAYTPQQNGVAERKNRTVMNM 603

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRS+L  K IPK+FWPEA+NW +++LNR PTLAVK+ TPEEAWSG KPSV HFR+FGC+ 
Sbjct: 604  VRSLLFDKNIPKTFWPEAVNWTIYVLNRCPTLAVKDVTPEEAWSGVKPSVNHFRVFGCIA 663

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVH+P+  R KLD +S+  V LGVSEESK YR +DP+SKKI++SRDV+FEED  WDW++ 
Sbjct: 664  HVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKKIVVSRDVIFEEDKQWDWEE- 722

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             K+ + ADL W D + E   +  N+N                     ++E+ +  G    
Sbjct: 723  -KQTV-ADLEWNDGENEERVS-ENDNEERVSENDNQGNVEKEREVIREEEHDSNEG---E 776

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDVE 900
               +E R R  P WM D+ESGEGLS++E  A++ +  + DP+ FEEA+K   WR  M+ E
Sbjct: 777  EIVKEYRERRPPGWMSDFESGEGLSEDE--AHMALMVSIDPLCFEEAVKSENWRLAMEKE 834

Query: 901  IKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTE 1080
            IK+IEKN TW LT LP GAK++GVKWVYKTK NE+G+++KYKARLVAKGY++KHG+DYTE
Sbjct: 835  IKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKHGVDYTE 894

Query: 1081 VFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            V+APVAR++T+R++I++AA K W IFQLDVKSAFLHG+L E+V++EQP GY+K G+E  V
Sbjct: 895  VYAPVARMDTIRMIIAIAAHKNWQIFQLDVKSAFLHGKLDEDVYVEQPRGYEKIGSEHLV 954


>gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1270

 Score =  507 bits (1305), Expect = e-165
 Identities = 249/420 (59%), Positives = 309/420 (73%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE+G  IK LRTDRGGE+ S  F +FC+  GIRRQLT AY+PQQNGV+ERKNRTI+NM
Sbjct: 550  VEKESGKEIKILRTDRGGEYNSSAFMSFCASYGIRRQLTTAYSPQQNGVSERKNRTILNM 609

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSML    IPK FWPEA+NW+VH+LNRSPT+AVK+ TPEEAWS  KP+V HFR+FGC+ 
Sbjct: 610  VRSMLKTSGIPKEFWPEAVNWSVHVLNRSPTVAVKHMTPEEAWSNRKPAVDHFRVFGCVA 669

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            + H+PD  R+KLDDK VK +FLGVSEESKAYRL++PI+KKIIISRDVVF+E+++WDW+  
Sbjct: 670  YSHVPDERRRKLDDKGVKCIFLGVSEESKAYRLFNPITKKIIISRDVVFDEESSWDWNGI 729

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             ++ +    + G  D E N  +   N                 A    +         S 
Sbjct: 730  GQQQVPLIADEGRVDSETNHELEAPN----------ESPSPVAARSPSEVQPV-----SP 774

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDVE 900
             + R QR R +P WM DYESG  L D+E IA+L +F+  DPI +EEA K++KWR  MD E
Sbjct: 775  RSPRAQRERKRPAWMMDYESGGDLIDDEAIAHLALFSYCDPITYEEAAKETKWREAMDAE 834

Query: 901  IKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTE 1080
            + +IEKNDTWELT LP G + +GVKWVYKTKL ++GEV+KYKARLVAKGY +K G+DY E
Sbjct: 835  MNSIEKNDTWELTKLPKGQQSIGVKWVYKTKLRQDGEVDKYKARLVAKGYKQKFGVDYQE 894

Query: 1081 VFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            VFAPVA+L+TVR+V+ LAAQ  W ++QLDVKSAFLHGEL EEV+I QPPGY K+G E +V
Sbjct: 895  VFAPVAKLDTVRMVLCLAAQNSWPVYQLDVKSAFLHGELEEEVYINQPPGYVKQGFENQV 954


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  520 bits (1338), Expect = e-165
 Identities = 258/433 (59%), Positives = 312/433 (72%), Gaps = 14/433 (3%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETGLSIKCLRTDRGGEFTS EF  +C  NGI+RQLT AYTPQQNGVAERKNRT+MNM
Sbjct: 547  VEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNM 606

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRS+L  K +P+ FW EA+NWA ++LNR PT +VK  TP EAW G KPSVGH R+FGC+ 
Sbjct: 607  VRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIA 666

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            + H+PD  R KL+DKS   V  GVSEESKAYRLYDP SK+IIISRDVVFEED  W+W+K 
Sbjct: 667  YAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEEDGQWNWEKK 726

Query: 541  HKEVIFADLNW-----------GDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDD 687
             +E    D  W            D +EE NA  GNE+                  +G++D
Sbjct: 727  SEEDNKFDTEWEDEKSEEREESSDGNEEENATDGNED--------------ENATDGNED 772

Query: 688  ENSAYTGGDSSSATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFA---TNDPILFEE 858
            EN+A       S   E R R  P W+ DY SGEGLSDEE    LV+FA    +DP  F+E
Sbjct: 773  ENTA-------SPVTEHRNRRAPGWVNDYVSGEGLSDEEVQTQLVLFAHAVHSDPTSFDE 825

Query: 859  AIKDSKWRTTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLV 1038
            A+K+ KWR  MD E+K+IEKN TW+LT LP  A+K+GVKWVYKTKLNE GEVEKYKARLV
Sbjct: 826  AVKEVKWRAAMDAEMKSIEKNGTWDLTELPKEARKIGVKWVYKTKLNELGEVEKYKARLV 885

Query: 1039 AKGYTKKHGIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIE 1218
            AKGY +++G+DY EV+APVAR++TVR++++LAAQ+GW +FQ DVKSAFLHG+L+E V++E
Sbjct: 886  AKGYAQEYGVDYEEVYAPVARMDTVRMILALAAQRGWCVFQQDVKSAFLHGKLAENVYVE 945

Query: 1219 QPPGYKKKGAEQK 1257
            QP GY+ K  E K
Sbjct: 946  QPRGYEIKNEEHK 958



 Score =  309 bits (791), Expect = 3e-90
 Identities = 159/292 (54%), Positives = 200/292 (68%), Gaps = 16/292 (5%)
 Frame = +1

Query: 433  SEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKSHKEVIFADLNWGDN---------- 582
            +EE KAYRLYDP SK+IIISRDVVFEED  W+W+K  +E    D  W D           
Sbjct: 954  NEEHKAYRLYDPTSKRIIISRDVVFEEDGQWNWEKKSEEDNNFDTEWEDEKSEEREESSD 1013

Query: 583  -DEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSSSAT--REQRLRSQ 753
             +EE NAA GNE                   +G++DEN+     D ++A+   E R R  
Sbjct: 1014 VNEEENAAEGNEE--------------ENATDGNEDENATDGNEDENTASPVTEHRNRRA 1059

Query: 754  PRWMRDYESGEGLSDEEDIANLVMFAT---NDPILFEEAIKDSKWRTTMDVEIKAIEKND 924
            P W  DY SGEGLSDEE    LV+FA    +DP  F+EA+K+ KWR  MD E+K+IEKN 
Sbjct: 1060 PGWTNDYVSGEGLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDAEMKSIEKNG 1119

Query: 925  TWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTEVFAPVARL 1104
            TW+LT LP  A+K+GVKWVYKTKLNE GEVEKYKARLVAKGY +++G+DY EV+APVAR+
Sbjct: 1120 TWDLTELPKEARKIGVKWVYKTKLNELGEVEKYKARLVAKGYAQEYGVDYEEVYAPVARM 1179

Query: 1105 ETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            +TVR++++LAAQ+GW +FQLDVKS FLHG+L+E V++EQP GY+ K  E KV
Sbjct: 1180 DTVRMILALAAQRGWCVFQLDVKSTFLHGKLAENVYVEQPRGYEIKNEEHKV 1231


>gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]
          Length = 1321

 Score =  506 bits (1302), Expect = e-164
 Identities = 249/421 (59%), Positives = 311/421 (73%), Gaps = 1/421 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE    I+CLRTDRGGE+TS EF   C  NGI+RQLTAAYTP QNGV+ER+N TIMNM
Sbjct: 547  VEKEKNQPIQCLRTDRGGEYTSSEFVNLCESNGIKRQLTAAYTPHQNGVSERRNITIMNM 606

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSML+ K +PK+FWPEA+NW+VHILNR PT +VKN TPEEAW G KP+V HFR+FG + 
Sbjct: 607  VRSMLTNKNVPKTFWPEAVNWSVHILNRCPTFSVKNMTPEEAWCGHKPAVDHFRVFGSIA 666

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            +VH+PD  RKKLD+K  K V LGVSEESKAYRLY+P++KKI IS+DVVF+E+N+W+W+  
Sbjct: 667  YVHVPDQKRKKLDNKGEKCVLLGVSEESKAYRLYNPLTKKICISKDVVFDENNSWNWENL 726

Query: 541  HKEVIFA-DLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDS 717
             KE   A +L   ++ E  N A G                    +N  + ++ + T    
Sbjct: 727  DKEKSVALELEDHESVEAENDAHG----------------VREESNELESDHGSETA--E 768

Query: 718  SSATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDV 897
            +S    QR R +P WM DY SGE  S+EE +A+  + A +DPI F+EAIK S+WR  MD 
Sbjct: 769  TSLQNMQRPRRKPGWMDDYTSGEEFSEEETLAHFALLAGSDPIAFDEAIKSSRWRKAMDA 828

Query: 898  EIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYT 1077
            EI+AIEKN+TWEL  LP G K VGVKW+YKTK+NE GE++K+KARLVAKGYT+K+GIDY+
Sbjct: 829  EIEAIEKNNTWELVELPKGEKAVGVKWIYKTKVNEKGEIDKFKARLVAKGYTQKYGIDYS 888

Query: 1078 EVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQK 1257
            EVFAPVAR +T+R+VI+LAA   W +FQLDVKSAFLHGEL E+VF+EQPPGY KK ++  
Sbjct: 889  EVFAPVARHDTIRMVIALAALNNWTVFQLDVKSAFLHGELVEQVFVEQPPGYVKKESKHM 948

Query: 1258 V 1260
            V
Sbjct: 949  V 949


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  504 bits (1297), Expect = e-163
 Identities = 243/420 (57%), Positives = 305/420 (72%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKET L+IKCLRTDRGGEFTS EF +FC +NGIRRQLT AYTPQQNGVAERKNRT+MN 
Sbjct: 608  VEKETSLAIKCLRTDRGGEFTSAEFNSFCKENGIRRQLTTAYTPQQNGVAERKNRTVMNS 667

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VR ML  K IPK FWPEA+ W V++LNR PT+A+K+ TPEE WSG KPSV H R+FGC+C
Sbjct: 668  VRCMLFEKGIPKPFWPEAVKWTVYVLNRCPTVALKDTTPEEVWSGVKPSVEHLRVFGCVC 727

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVH+PD  R KL++KS   VFLG+S+ESK YR+YDP++KKI+ SRDVVFEE   WDWDKS
Sbjct: 728  HVHVPDVKRTKLENKSTSGVFLGISDESKGYRIYDPLTKKIMTSRDVVFEEKRKWDWDKS 787

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
            +++ +  DL WG++++E    + +                       DDE++  +   SS
Sbjct: 788  YEQQVLVDLEWGESEDEVIENLSDNEDEDAVVGEDVVV---------DDEDAVVS--PSS 836

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDVE 900
            S++ E R R  P WM DY SGEGL                    ++A+    WR  M+ E
Sbjct: 837  SSSEEARNRRLPIWMDDYVSGEGL--------------------QKAMGSEDWRRAMETE 876

Query: 901  IKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTE 1080
            IK+IEKN+TW LT+LP GAKK+GVKWVYKTKLNE+GEVEK KARLVAKGY +++GIDY+E
Sbjct: 877  IKSIEKNETWVLTDLPEGAKKIGVKWVYKTKLNEHGEVEKLKARLVAKGYVQEYGIDYSE 936

Query: 1081 VFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            VFAPVAR++TVR++++LAA K W ++QLDVKSAFLHGEL E+V++EQP G++KK    KV
Sbjct: 937  VFAPVARMDTVRIILALAAHKNWKVYQLDVKSAFLHGELMEDVYVEQPKGFEKKEELNKV 996


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  488 bits (1256), Expect = e-163
 Identities = 248/428 (57%), Positives = 309/428 (72%), Gaps = 11/428 (2%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VE E+   IKCLRTDRGGEFTSLEF  FCS  GI+RQLTAAYTPQQNGVAERKNRTI+NM
Sbjct: 302  VENESNCLIKCLRTDRGGEFTSLEFNNFCSSQGIKRQLTAAYTPQQNGVAERKNRTILNM 361

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSM+S + +PK FWPEA+ WA +++NRSPT AVK+ TPEEA+SG KPSV HFRIFGCL 
Sbjct: 362  VRSMISCRGVPKCFWPEAVKWATYVMNRSPTFAVKDITPEEAYSGVKPSVHHFRIFGCLA 421

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVHIPD +RKKLD KS K + LGVSEESKAY+LYDP ++KIIISRDV+FEE+  W+W+K+
Sbjct: 422  HVHIPDAHRKKLDGKSTKCIHLGVSEESKAYKLYDPTARKIIISRDVIFEENKGWNWNKA 481

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGG--- 711
                  +  N G+   +  A +  EN                  NG   EN    G    
Sbjct: 482  ------STSNSGEQLSDNEAGIEVENNDTDALNNEN--------NGDTIENENEAGSSDM 527

Query: 712  DSSSATREQRLRSQPR----WMRDYESGEGLSDEED-IANL--VMFAT-NDPILFEEAIK 867
            D   +  EQ +  +PR    ++RDY +G  L D++D + NL   MF T +DP  +EEA+K
Sbjct: 528  DLEDSEEEQAISPRPRRPPGYLRDYVTGNELPDDDDQLQNLAIAMFGTSDDPATYEEAVK 587

Query: 868  DSKWRTTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKG 1047
               WR  M+ EIK+IE N TWELT LP  AK +GVKW+YKTKLNE G+VEK+KARLVAKG
Sbjct: 588  SKVWRDAMEAEIKSIESNGTWELTKLPKEAKAIGVKWIYKTKLNEKGKVEKHKARLVAKG 647

Query: 1048 YTKKHGIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPP 1227
            Y++KHGIDY EVFAPVAR +T+R ++SLAA + W ++QLDVKSAFLHG+L E+V++ QP 
Sbjct: 648  YSQKHGIDYGEVFAPVARWDTIRTILSLAAFERWPVYQLDVKSAFLHGDLMEDVYVMQPL 707

Query: 1228 GYKKKGAE 1251
            GY++KG++
Sbjct: 708  GYEQKGSD 715


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  502 bits (1293), Expect = e-163
 Identities = 249/419 (59%), Positives = 304/419 (72%)
 Frame = +1

Query: 4    EKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNMV 183
            EKE G SIKCLRTDRGGE+ S EFT FCS +GI RQLTAAYTPQQNGVAERKNRTIMNMV
Sbjct: 547  EKEAGTSIKCLRTDRGGEYNSKEFTEFCSTHGINRQLTAAYTPQQNGVAERKNRTIMNMV 606

Query: 184  RSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLCH 363
            RSMLS K++PK FW EA NW++HILNR PT A++N TP+EAW+G KP V HFRIFGCL H
Sbjct: 607  RSMLSEKQMPKEFWAEAANWSIHILNRCPTTALENMTPQEAWTGCKPRVDHFRIFGCLAH 666

Query: 364  VHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKSH 543
            VH+PD  R KLDDKS   +FLGVS+ESKAY+L+DPI+KKI ISRDV FEE+  W W +S 
Sbjct: 667  VHVPDQKRIKLDDKSKTHIFLGVSKESKAYKLFDPITKKITISRDVKFEENACWKWKQSK 726

Query: 544  KEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSSS 723
             EV    L+  D + + N  +  E                    G +   ++  G + +S
Sbjct: 727  GEVQSDVLDLEDKNSDANKELELEE-----DSDSNNTSNTISQTGGNSSTTSSGGSEPNS 781

Query: 724  ATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTMDVEI 903
             T   R R  P WM DY  GEGLS+EE+ A ++M    DP+ + EA K+ KWR  M  EI
Sbjct: 782  PT--GRFRRAPGWMSDYTPGEGLSEEEEEA-MMMITEEDPVTYNEAAKEKKWRDAMAKEI 838

Query: 904  KAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDYTEV 1083
             +IEKN TW LT LP+G K +GVKW++KTKLNE+G VEKYKARLVAKGY +++GIDYTEV
Sbjct: 839  DSIEKNGTWRLTTLPSGVKAIGVKWIFKTKLNEHGNVEKYKARLVAKGYAQQYGIDYTEV 898

Query: 1084 FAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAEQKV 1260
            FAPVARL+T+RL+++ AAQ  W ++QLDVKSAFL GEL EEV+++QP G++KKG E KV
Sbjct: 899  FAPVARLDTIRLILATAAQNKWEVYQLDVKSAFLQGELKEEVYVQQPTGFEKKGEEDKV 957


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  495 bits (1275), Expect = e-160
 Identities = 237/416 (56%), Positives = 306/416 (73%), Gaps = 2/416 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE+   I CLRTDRGGEFTS  F  FCS++GI+RQLT AYTPQQNGV+ERKNRT++NM
Sbjct: 537  VEKESNCQIMCLRTDRGGEFTSNNFNEFCSNHGIKRQLTTAYTPQQNGVSERKNRTLLNM 596

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            +RSM++ + +PKSFWPEA+ W+ ++LNRSPTLAVK+ TPEEAWSG KP+V HFRIFGCL 
Sbjct: 597  IRSMMAGRNVPKSFWPEALKWSTYVLNRSPTLAVKDITPEEAWSGSKPTVHHFRIFGCLA 656

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            +VHIPD NRKKLDDKS+K + LG+SEESK Y+LYDP++K++I+S+DVVFEE   W+W+  
Sbjct: 657  YVHIPDFNRKKLDDKSIKCILLGLSEESKGYKLYDPVNKRVIVSKDVVFEESKGWNWNND 716

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGGDSS 720
             K     D+     DE      GN N                 AN +    +  TG  + 
Sbjct: 717  SKSQKQIDIT-STTDE------GNSNEDHEIVPDDEVSDEGFEANNNSSPETDMTGESTD 769

Query: 721  SATREQRLRSQPRWMRDYESGEGLSDE-EDIANLVMFAT-NDPILFEEAIKDSKWRTTMD 894
            S     R++ +P ++ DY +GE L +E + + NL MF+T  DP  ++EAIK+  W+  MD
Sbjct: 770  SEELTPRVKRKPGYLNDYVTGEELDEETQHLQNLAMFSTKEDPTNYDEAIKNGVWKKAMD 829

Query: 895  VEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGIDY 1074
             EI++IE+NDTWEL  LP GAKK+GVKW+YKTK NE GEVEKYKARLVAKGY+++ GIDY
Sbjct: 830  QEIESIERNDTWELVTLPAGAKKIGVKWIYKTKYNEKGEVEKYKARLVAKGYSQQQGIDY 889

Query: 1075 TEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKK 1242
             EVFAPVAR +T+R ++SLAA + W ++QLDVKSAFLHGEL E V+++QP GY+K+
Sbjct: 890  NEVFAPVARWDTIRTILSLAASQNWSVYQLDVKSAFLHGELVENVYVDQPLGYQKE 945


>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  499 bits (1286), Expect = e-160
 Identities = 243/426 (57%), Positives = 313/426 (73%), Gaps = 6/426 (1%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE G  I CLRTDRGGEF S EF  FC D GI RQLTA+YTPQQNGVAERKNRTIMN 
Sbjct: 550  VEKEVGAFITCLRTDRGGEFISNEFEEFCKDQGICRQLTASYTPQQNGVAERKNRTIMNA 609

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VR++L+ +++P+ FWPEA+ W VH+ NRSPT AV + TPEEAW+G +PSV +FRIFGC+ 
Sbjct: 610  VRAVLNERQVPRVFWPEAVKWCVHVQNRSPTSAVDHITPEEAWTGVRPSVDYFRIFGCVA 669

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            H H+PD  R KLDDKS + VFLGVS+ESKAY+L+DPI KK+I++RDVVFEED +WDW ++
Sbjct: 670  HAHVPDQKRSKLDDKSKRCVFLGVSDESKAYKLFDPIEKKVIVNRDVVFEEDKSWDWGRT 729

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGG--- 711
             +E     L+W +N+E+     G ++G                +  S ++  + T     
Sbjct: 730  EEECKVDVLDWEENEED-----GEDHGTAQNEEENSGDINQGASPSSLNKTGSPTNETND 784

Query: 712  -DSSSATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATN--DPILFEEAIKDSKWR 882
             +     R  R R +P W+ D+E    LS+EE +  ++M A N  DP LFEEA K +KWR
Sbjct: 785  VEQEFLERAARSRRRPGWLVDFEEDPNLSEEESLM-VMMTAENGSDPYLFEEAFKSAKWR 843

Query: 883  TTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKH 1062
              M++E+KAIEKN TW LT+ P G K +GVKW++KTKLNE+G+VEK+KARLVAKGY +++
Sbjct: 844  EAMNMEMKAIEKNKTWVLTDAPRGVKPIGVKWIFKTKLNESGKVEKFKARLVAKGYAQQY 903

Query: 1063 GIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKK 1242
            G+DYTEVFAPVARL+TVR++++LAAQ+GW +FQLDVKSAFLHGEL EEVF++QP G+ KK
Sbjct: 904  GVDYTEVFAPVARLDTVRVLLALAAQRGWEVFQLDVKSAFLHGELKEEVFVQQPEGFVKK 963

Query: 1243 GAEQKV 1260
            G E KV
Sbjct: 964  GEENKV 969


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  493 bits (1269), Expect = e-159
 Identities = 251/428 (58%), Positives = 307/428 (71%), Gaps = 8/428 (1%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKE G  + CLRTDRGGEFTS EF  FC  +GI RQLTAA+TPQQNGVAERKNRTIMN 
Sbjct: 550  VEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNA 609

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS +++PK FW EA  W+VHI NRSPT AV+  TPEEAWSG KP V +FR+FGC+ 
Sbjct: 610  VRSMLSERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIG 669

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            +VHIPD  R KLDDKS K VFLGVSEESKA+RLYDP+ KKI+IS+DVVF+ED +WDWD++
Sbjct: 670  YVHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQA 729

Query: 541  HKEVIFADLNWGDNDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSA------Y 702
              E     L  GD D+E N+ V                       GSD+  S+       
Sbjct: 730  DVEAKEVTLECGDEDDEKNSEV-----------VEPIAVASPNHVGSDNNVSSSPILAPS 778

Query: 703  TGGDSSSATREQRLRSQPRWMRDYESGEGLSDEEDIA--NLVMFATNDPILFEEAIKDSK 876
            +   S  A +  R R  P WM DYE+GEG   EE+++   L+M    DPI F++A+KD  
Sbjct: 779  SPAPSPVAAKVTRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKI 838

Query: 877  WRTTMDVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTK 1056
            WR  M+ EI++I KN+TWELT LP G   +GVKWVYKTKLNE+GEV+KYKARLVAKGY +
Sbjct: 839  WREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQ 898

Query: 1057 KHGIDYTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYK 1236
             +GIDYTEVFAPVARL+TVR ++++++Q  W IFQLDVKSAFLHGEL EEV++ QP G+ 
Sbjct: 899  CYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFI 958

Query: 1237 KKGAEQKV 1260
            ++G E+KV
Sbjct: 959  REGEEEKV 966


>emb|CAN74050.1| hypothetical protein VITISV_040588 [Vitis vinifera]
          Length = 1067

 Score =  484 bits (1245), Expect = e-158
 Identities = 231/423 (54%), Positives = 308/423 (72%), Gaps = 3/423 (0%)
 Frame = +1

Query: 1    VEKETGLSIKCLRTDRGGEFTSLEFTTFCSDNGIRRQLTAAYTPQQNGVAERKNRTIMNM 180
            VEKETG+ IKCLRTDRGGEF   EF  FC   GI+RQLT AYTPQ NGVAERKN+ +MNM
Sbjct: 325  VEKETGMYIKCLRTDRGGEFNLEEFNEFCRQCGIKRQLTIAYTPQHNGVAERKNQIVMNM 384

Query: 181  VRSMLSRKKIPKSFWPEAINWAVHILNRSPTLAVKNKTPEEAWSGFKPSVGHFRIFGCLC 360
            VRSMLS KKI K+FWPEA+NW +++LN+SPT+AVKN TPEEAWSG KP+V HFR+FGC+ 
Sbjct: 385  VRSMLSEKKIQKTFWPEAVNWTMYVLNKSPTVAVKNVTPEEAWSGVKPTVEHFRVFGCVA 444

Query: 361  HVHIPDCNRKKLDDKSVKSVFLGVSEESKAYRLYDPISKKIIISRDVVFEEDNNWDWDKS 540
            HVH+PD  + KLD+KS++ V LG S+E K Y+LYDP++KK++ SRD+VFEED  W+WD S
Sbjct: 445  HVHVPDAKKTKLDNKSLECVLLGFSDELKGYKLYDPVAKKVVTSRDIVFEEDRQWEWDTS 504

Query: 541  HKEVIFADLNWGD---NDEEPNAAVGNENGPXXXXXXXXXXXXXXGANGSDDENSAYTGG 711
            ++E +  DL WGD   ND E N   G+EN                 A G++++ +A   G
Sbjct: 505  YEEQVLVDLEWGDDDKNDTEDNE--GDEN-------LEAASEGNEEAEGNENQVAANDAG 555

Query: 712  DSSSATREQRLRSQPRWMRDYESGEGLSDEEDIANLVMFATNDPILFEEAIKDSKWRTTM 891
            D+++                 ++ +  ++  D     + ++ D I +EEA+  SKWR  M
Sbjct: 556  DAAAT----------------DASDAPAEGSDARERRVRSSIDLINYEEAVMSSKWRLAM 599

Query: 892  DVEIKAIEKNDTWELTNLPTGAKKVGVKWVYKTKLNENGEVEKYKARLVAKGYTKKHGID 1071
            D +I +IEKN TW+L +L  GAK + VKW+YKTKLNE GEV+KYKAR V KGY+++ G+D
Sbjct: 600  DSKINSIEKNQTWKLIDLLAGAKTIEVKWIYKTKLNELGEVDKYKARFVTKGYSQQQGVD 659

Query: 1072 YTEVFAPVARLETVRLVISLAAQKGWMIFQLDVKSAFLHGELSEEVFIEQPPGYKKKGAE 1251
            +TE++APVAR++TVR++++LAAQ+GW I+QLDVKSAFLHGELSE+V+++QP GY+KKG+E
Sbjct: 660  FTEIYAPVARMDTVRMIVALAAQRGWTIYQLDVKSAFLHGELSEDVYVDQPKGYEKKGSE 719

Query: 1252 QKV 1260
             KV
Sbjct: 720  HKV 722