BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00039023
         (2868 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   587   0.0  
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               573   0.0  
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   554   e-174
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   552   e-173
dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subt...   551   e-173
dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subte...   550   e-173
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]      549   e-172
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               549   e-171
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   536   e-171
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   528   e-166
gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygro...   509   e-165
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               520   e-161
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   501   e-157
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   504   e-155
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   501   e-155
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   491   e-154
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   494   e-151
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt...   478   e-151
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   485   e-150
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   472   e-149

>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  587 bits (1512), Expect = 0.0
 Identities = 352/976 (36%), Positives = 510/976 (52%), Gaps = 24/976 (2%)
 Frame = +3

Query: 12   RMDQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKG 191
            + DQ +LSWL +S+S+ M   V+ C +S ++W  +   F +H  A+  QLR +L+S    
Sbjct: 98   QQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTLD 157

Query: 192  NLSINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQE 371
            NLSI++Y+L++++L D L++ G  +S  E +  IL GL ++Y+S V  ++SR D +T+ E
Sbjct: 158  NLSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDE 217

Query: 372  VQYMLQSQEIRLEQLH------LSLPT-------DTTLPTAHLATQLRNS--LHLQGPST 506
            V+ +L   E RL++        +++ T         T P AHL  Q   S   H +G  T
Sbjct: 218  VETLLLGHESRLDKFKKKAAASINVTTAVTEPDPSATNPQAHLTHQNNQSGPSHRRGGRT 277

Query: 507  NXXXXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXX 686
            N                        CQ+C++ GH+AS CY RFD ++             
Sbjct: 278  NSRGGRFSNWAGRGRGRFAGYQ---CQVCHRYGHVASACYYRFDETY------------- 321

Query: 687  XXXXXXXXXXXXXXXXXAYYSTTTDTQS---DNSWYLDSGATNHITADPSNLHHPTEYKG 857
                             AY S    T     +N+WY DSGA+NH+T    N+H  T ++G
Sbjct: 322  --------VPSSPLEAPAYPSNNQHTNPGACNNNWYPDSGASNHVTNVSQNIHQFTPFEG 373

Query: 858  INHLLIGNGQSLFISHYGSSSLYNS-HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVF 1034
             + + +GNGQ L I+  G ++ ++  + +    LNNLL VP ITKNL+S+SQ +KDN V+
Sbjct: 374  PDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNNLLFVPSITKNLISVSQFSKDNSVY 433

Query: 1035 VEFYHDYCSVKEQTSKRELLRG-VLSEGLYRLQ-LHQTPTTSPATSHHMLSCVSKRPAHF 1208
             EF+   C VK Q +   LL+G V S+GLY+   L   P+T       +    S   A  
Sbjct: 434  FEFHPHICLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQSVQQQQLARIFSVNTA-- 491

Query: 1209 QXXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNK--ELLSTAPS-FCNACRIGKSKHKH 1379
                           WH RLGHPN +VM+H+  N   +L+S   S FC  C +GKS    
Sbjct: 492  ------ATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLP 545

Query: 1380 YSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIF 1559
             + S T+   P ++++SD+WGPAP+ S  G++YYV FVD +T FTWIY LK K++  ++F
Sbjct: 546  SNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVF 605

Query: 1560 LHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRH 1739
              F  +V+ ++   IK LQ+DWGGEYRS    L  +GI  R  CPHTH QNG +ERKHRH
Sbjct: 606  KQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRH 665

Query: 1740 IVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXX 1919
            IVE+GLTL+ QA +P+Q+W  +F T+ +LIN L + ++ +  P                 
Sbjct: 666  IVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIF 725

Query: 1920 GCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFS 2099
            GC+CFPH++ YN+HKL FRS +CVF+GYS +HKGYKCL   G++YI++ V FNE +FP+ 
Sbjct: 726  GCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYK 785

Query: 2100 SGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSD 2279
              F +S  K S+S    S     +  P  +H++++                  P   +  
Sbjct: 786  DLFSSS--KASDSQLPISVPLTINPTPTPTHATRLTSPNPPTTSPSLISDSYSPNTAAHT 843

Query: 2280 SPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTR 2459
            SP +LS                  +P+I+                           M TR
Sbjct: 844  SPSTLS-------IPTSSNLEPSSSPIIH---------------------PHNVHPMTTR 875

Query: 2460 SKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDL 2639
            +K GI KP+   + LL        T + P + +QA  +P W  AM  EYNAL+ N+TW L
Sbjct: 876  AKDGIVKPRLQPTLLL--------TQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSL 927

Query: 2640 VPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXX 2819
            VP   H   +  K VFR+K N +GSVQ++KARLVAKGF QQ   D+ ETFSPV+KP    
Sbjct: 928  VPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 987

Query: 2820 XXXXXXXXNNWDIQQI 2867
                    + W IQQ+
Sbjct: 988  LILTLALTHRWPIQQL 1003


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  573 bits (1477), Expect = 0.0
 Identities = 362/989 (36%), Positives = 500/989 (50%), Gaps = 39/989 (3%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL++++E++    V C  + +VW  +   F  H KA++ QLR +L+++KKG  
Sbjct: 88   DQMLFTWLLSTLAESVLPRTVGCRHAFQVWDQIHKYFDAHLKAKVRQLRSELKTVKKGTK 147

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            SI++++L+++++AD L S G  IS+ + I  IL GL ++Y+  V+ +  R D  +L +++
Sbjct: 148  SISEFVLRVRAIADTLISIGDSISEQDQIDSILEGLPEEYNPFVMMIYGRSDSPSLFDIE 207

Query: 378  YMLQSQEIRLEQLHLSLPTDTTLPTAHLATQLRNSLHLQGPSTNXXXXXXXXXXXXXXXX 557
             +L  QE +L +    L    +LP A       N  H  G   N                
Sbjct: 208  GLLLVQESQLAKFRQEL----SLPAASA-----NVAHSNGGRGNSGARGRGRSARGRGRA 258

Query: 558  XXXXXX--PLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXX 731
                    P CQLCNK GH    C+ R+D +F                            
Sbjct: 259  SSSSTGTRPTCQLCNKYGHHVRDCWYRYDENFV-PVQANPVPQPPPPPPRDTQAPAPQAC 317

Query: 732  XXAYYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYG 911
               + ++T +     SW+ DSGA++HITAD SNL     Y G N + +GNG  L I+  G
Sbjct: 318  TANFAASTQELVIPQSWFPDSGASHHITADASNLAQGKVYHGSNKVHMGNGIGLNINSIG 377

Query: 912  SSSLYNS-HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRE 1088
             +S   + +   TL LN LL VP ITKNLLS+S+   DN VF EF+   C VK Q +K+ 
Sbjct: 378  QASFSATLNPNQTLHLNELLHVPAITKNLLSVSKFATDNNVFFEFHATDCFVKSQGTKQV 437

Query: 1089 LLRGVL-SEGLY---RLQLHQTPT--TSPATSHHMLSCVSKRPAHF-------------- 1208
            LL+G L ++GLY    L L + PT  TS A S    S  +K P+                
Sbjct: 438  LLKGSLGADGLYSFPHLPLLKDPTCLTSSAWSSPDSSATNKAPSTISSDAKSADSIVSLP 497

Query: 1209 ----QXXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKELL---STAPSFCNACRIGKS 1367
                +              WH RLGH N N ++ +L    +    +    FC++C +GKS
Sbjct: 498  LQTNKAVDSSIHSSFKSNVWHHRLGHANKNSVKTVLQLCNIPYSNNKTSEFCDSCCVGKS 557

Query: 1368 KHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEV 1547
               +   + TV TKP E++H+D+WGPA  +S  G+ YY+ FVD  T +TW+Y LK KS+ 
Sbjct: 558  HKIYAPMTDTVYTKPFELVHTDLWGPAHTVSHCGYSYYIAFVDACTKYTWLYFLKRKSDA 617

Query: 1548 KDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSER 1727
               F  F  LV  +F+TKIK+LQSDWGGEYRS++ +L +LGI+ R  CPHT  QNG  ER
Sbjct: 618  LSAFTQFNALVSTQFQTKIKSLQSDWGGEYRSISTLLTSLGINHRVTCPHTSHQNGTVER 677

Query: 1728 KHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLNH-QSPIEAXXXXXXXXX 1904
            +HR IVE+GLTLL+ A+MPL +W  +F T+ FL+N L T +L+H  SP  A         
Sbjct: 678  RHRSIVEIGLTLLSHANMPLNFWDHSFTTAVFLLNRLPTASLHHFTSPYHALYNKIPDYS 737

Query: 1905 XXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNEC 2084
                 GC CFPH++ YN HKLDFRSTKCV++G SP+HKGYKCL P G++YI++ V FNE 
Sbjct: 738  SIKGFGCTCFPHLRPYNSHKLDFRSTKCVYLGPSPHHKGYKCLSPDGRVYISKDVVFNEL 797

Query: 2085 EFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFL----SHSSQVQEXXXXXXXXXXXXXE 2252
            EFP+S      F   S S   ++   +S  +P L    S +   +               
Sbjct: 798  EFPYS----ILFPNTSRSAPTNTTHSWSSVIPTLPSIVSGTPPTESAIGSPLIDSSTPIS 853

Query: 2253 APPRNLSSD----SPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXXXXXXX 2420
              P N+SS     SP S +                   PV                    
Sbjct: 854  PVPNNVSSAPLPISPQSPASAPSSPSPVSISPPPDTSLPV---------------KKTKP 898

Query: 2421 XXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDD 2600
                     M+TR K G  KPK +L+               P SV+ A   P W  AM+ 
Sbjct: 899  AVDPTNTHPMVTRGKTGNLKPKVFLAHK------------EPHSVKHALTDPNWLKAMEA 946

Query: 2601 EYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFF 2780
            EY+AL+ N TW LVP  +H   +  K VFRIK N DGS+ ++KARLVAKGF Q+P  DF 
Sbjct: 947  EYSALLHNKTWSLVPLPAHRRAIGCKWVFRIKENPDGSINKYKARLVAKGFSQEPGFDFK 1006

Query: 2781 ETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            ETFSPVVKP              WDIQQI
Sbjct: 1007 ETFSPVVKPVTIRIILTLALSFKWDIQQI 1035


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  554 bits (1427), Expect = e-174
 Identities = 340/988 (34%), Positives = 492/988 (49%), Gaps = 38/988 (3%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL+++S+ +   V+ C  +HEVW  +   F +  K+R  QLR +L++ KK + 
Sbjct: 61   DQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSR 120

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            S+N+Y+L++KS+ ++L + G ++S+ E +  IL GL ++++S V+ + SR D  T+++V+
Sbjct: 121  SVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVE 180

Query: 378  YMLQSQEIRLEQLHLSLPTDT-TLPTAHLATQLRNSL-----------HLQGPSTNXXXX 521
             +L  QE + E+    L + + +   AH  T   +S            H    +      
Sbjct: 181  ALLLLQEAQFEKFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGRGR 240

Query: 522  XXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXX 701
                                CQ+C KP H A  C+ R+D     Q               
Sbjct: 241  GKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAMNQNSRGGYQVGPSNRPQ 300

Query: 702  XXXXXXXXXXXXA----YYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHL 869
                        A    Y     D  S+ +WY DSGA++H+T +P+NL + + Y G + +
Sbjct: 301  NFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQV 360

Query: 870  LIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTKDNPVFVEFY 1046
            ++GNGQ + I   G S  ++ +  +  L L +LL VP I+KNLLS+S+  +DN V  EF+
Sbjct: 361  VMGNGQGVSIHSLGQSQFHSPNEPNVKLTLKDLLHVPNISKNLLSVSKFAQDNNVIFEFH 420

Query: 1047 HDYCSVKEQTSKRELLRGVL-SEGLYRLQLHQTPTTSPATSHHMLSCVSK--------RP 1199
              +C VK Q SK+ LL G + ++GLY+ +  +  T S A S+   S +S          P
Sbjct: 421  PYHCFVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNP 480

Query: 1200 AHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML-------SNKELLSTAPSFCNACRI 1358
             +                WH+RLGH + + ++++L       SNK    TA   C  C +
Sbjct: 481  VNCNNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNK----TATLPCTFCCM 536

Query: 1359 GKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLK 1538
            GKS   H   S TV TKP E+IH D+WGPAP +S  G+ YY+ FVD YT FTWIY LK K
Sbjct: 537  GKSHRLHSPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAK 596

Query: 1539 SEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGK 1718
            S+    F  F+ L++ +F+  IK +QSDWGGE+R+   +L  LGI  R  CPHT  QNG 
Sbjct: 597  SDALKAFTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGT 656

Query: 1719 SERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLN-HQSPIEAXXXXXX 1895
             ERKHRHIVEMGLTLL+ A++PL++W  +F  + +LIN L +  +   QSP  A      
Sbjct: 657  VERKHRHIVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQP 716

Query: 1896 XXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTF 2075
                    GC CFPH++ YN HKL +RS+ CV++G SP HKG+KCL  +G+IYI++ V F
Sbjct: 717  DYSQIKVFGCLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIF 776

Query: 2076 NECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEA 2255
            +E +FP+ S F +S          SSN   SH  P       V                 
Sbjct: 777  HESQFPYLSLFASS----------SSNSHMSHTYPAQILFPSVNTNTNLHPETSSAPDTD 826

Query: 2256 PPRNLS----SDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXXXXXXXX 2423
            PP  +S    S SP S +                  +P +                    
Sbjct: 827  PPDPVSPLPGSVSPSSSTPLTISQINSLISQPISTTSPSV---PTPPADPVPAIRPASQN 883

Query: 2424 XXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDE 2603
                    M+TR+K G  KPK ++++L             P SV+ A   P W  AM  E
Sbjct: 884  ISHHNAHPMITRAKTGNLKPKVFVAAL------------EPKSVKSALNDPAWLQAMQAE 931

Query: 2604 YNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFE 2783
            Y AL+ N TW LVP   H   +  K +FR+K N DG+V + KARLVAKGF Q    DF E
Sbjct: 932  YKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTE 991

Query: 2784 TFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            TFSPV+KP              W +QQI
Sbjct: 992  TFSPVIKPITIRIILTLAVTFKWSVQQI 1019


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  552 bits (1423), Expect = e-173
 Identities = 339/988 (34%), Positives = 491/988 (49%), Gaps = 38/988 (3%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL+++S+ +   V+ C  +HEVW  +   F +  K+R  QLR +L++ KK + 
Sbjct: 61   DQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSR 120

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            S+N+Y+L++KS+ ++L + G ++S+ E +  IL GL ++++S V+ + SR D  T+++V+
Sbjct: 121  SVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVE 180

Query: 378  YMLQSQEIRLEQLHLSLPTDT-TLPTAHLATQLRNSL-----------HLQGPSTNXXXX 521
             +L  QE + E+    L + + +   AH  T   +S            H    +      
Sbjct: 181  ALLLLQEAQFEKFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGRGR 240

Query: 522  XXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXX 701
                                CQ+C KP H A  C+ R+D     Q               
Sbjct: 241  GKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAMNQNSRGGYQVGPSNRPQ 300

Query: 702  XXXXXXXXXXXXA----YYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHL 869
                        A    Y     D  S+ +WY DSGA++H+T +P+NL + + Y G + +
Sbjct: 301  NFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQV 360

Query: 870  LIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTKDNPVFVEFY 1046
            ++GNGQ + I   G S  ++ +  +  L L +LL VP I+KNLLS+S+  +DN V  EF+
Sbjct: 361  VMGNGQGVSIHSLGQSQFHSPNEPNVKLTLKDLLHVPNISKNLLSVSKFAQDNNVIFEFH 420

Query: 1047 HDYCSVKEQTSKRELLRGVL-SEGLYRLQLHQTPTTSPATSHHMLSCVSK--------RP 1199
              +C VK Q SK+ LL G + ++GLY+ +  +  T S A S+   S +S          P
Sbjct: 421  PYHCFVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNP 480

Query: 1200 AHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML-------SNKELLSTAPSFCNACRI 1358
             +                WH+RLGH + + ++++L       SNK    TA   C  C +
Sbjct: 481  VNCNNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNK----TATLPCTFCCM 536

Query: 1359 GKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLK 1538
            GKS   H   S TV TKP E+IH D+WGPAP +S  G+ YY+ FVD YT FTWIY LK K
Sbjct: 537  GKSHRLHSPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAK 596

Query: 1539 SEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGK 1718
            S+    F  F+ L++ +F+  IK +QSDWGGE+R+   +L  LGI  R  CPHT  QNG 
Sbjct: 597  SDALKAFTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGT 656

Query: 1719 SERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLN-HQSPIEAXXXXXX 1895
             ERKHRHIVEMGLTLL+ A +PL++W  +F  + +LIN L +  +   QSP  A      
Sbjct: 657  VERKHRHIVEMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQP 716

Query: 1896 XXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTF 2075
                    GC CFPH++ YN HKL ++S+ CV++G SP HKG+KCL  +G+IYI++ V F
Sbjct: 717  DYSQIKVFGCLCFPHLRPYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIF 776

Query: 2076 NECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEA 2255
            +E +FP+ S F +S          SSN   SH  P       V                 
Sbjct: 777  HESQFPYLSLFASS----------SSNSHMSHTYPAQILFPSVNTNTNLHPETSSAPDTD 826

Query: 2256 PPRNLS----SDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXXXXXXXX 2423
            PP  +S    S SP S +                  +P +                    
Sbjct: 827  PPDPVSPLPGSVSPSSSTPLTISQINSLISQPISTTSPSV---PTPPADPVPAIRPASQN 883

Query: 2424 XXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDE 2603
                    M+TR+K G  KPK ++++L             P SV+ A   P W  AM  E
Sbjct: 884  ISHHNAHPMITRAKTGNLKPKVFVAAL------------EPKSVKSALNDPAWLQAMQAE 931

Query: 2604 YNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFE 2783
            Y AL+ N TW LVP   H   +  K +FR+K N DG+V + KARLVAKGF Q    DF E
Sbjct: 932  YKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTE 991

Query: 2784 TFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            TFSPV+KP              W +QQI
Sbjct: 992  TFSPVIKPITIRIILTLAVTFKWSVQQI 1019


>dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subterraneum]
          Length = 1433

 Score =  551 bits (1420), Expect = e-173
 Identities = 342/994 (34%), Positives = 495/994 (49%), Gaps = 44/994 (4%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL++IS+A+   VV C  SHEVW  +   F +  K+RI QLR +L++ KK   
Sbjct: 97   DQTLFTWLLSTISDAVLPRVVHCKHSHEVWDKIHKYFNSVLKSRIRQLRSELKNTKKLAR 156

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
             +++Y+L++KS+ ++L + G  +++ E I  IL GL +D++S V+ + SR D  T+++++
Sbjct: 157  PVSEYLLRIKSIVNSLIAMGETVTEQEQIDAILEGLPEDFNSFVMMMYSRFDTPTVEDIE 216

Query: 378  YMLQSQEIRLEQLHLSLPTDTTLPTAHLA---------------TQLRNSLHLQGPSTNX 512
             +L  QE + E+    L   +   +A++A               T+  N  +        
Sbjct: 217  GLLMLQEAQFEKFRQELTNPSV--SANIAQIGSKNHQSNSEAEDTESGNESYNSNSYRGR 274

Query: 513  XXXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFD--ISFHGQXXXXXXXXXX 686
                                   CQ+C K  H A+ C+ R++   S              
Sbjct: 275  GRGKGRARGRGRAPNAPNTGKVQCQICGKANHDAAICWYRYEPPSSRSNACGHNAGSSSR 334

Query: 687  XXXXXXXXXXXXXXXXXAYYSTTTDTQS--DNSWYLDSGATNHITADPSNLHHPTEYKGI 860
                              YY+   D  S  + SWY DSGA++H+T +P+NL + T Y+G 
Sbjct: 335  PPPYNPYPRPSAHLALPQYYNPIADMDSVSNASWYPDSGASHHLTFNPNNLTYRTPYQGQ 394

Query: 861  NHLLIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTKDNPVFV 1037
            + + +GNGQ + I   G S+ Y+ ++ +  L LNNLL VP I+KNLLS+S+  +DN VF 
Sbjct: 395  DQVTMGNGQGVSIESLGLSNFYSPYSPTVQLKLNNLLHVPNISKNLLSVSRFARDNNVFF 454

Query: 1038 EFYHDYCSVKEQTSKRELLRGVL-SEGLYR-----------LQLHQTPTTSPATSHHMLS 1181
            EF+  +C VK Q SK+ LL G + S+GLY+           L    +PT S   S  + S
Sbjct: 455  EFHPYFCYVKSQGSKQTLLEGTVGSDGLYKFKPFEFTKTNTLSSQPSPTLSLNKSSSLRS 514

Query: 1182 C---VSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML-------SNKELLSTA 1331
                +  + A                 WH+RLGH +N  ++ +L       SNK    T 
Sbjct: 515  SQNSIFNKNAQCNNALSNEHLDSTFHKWHLRLGHAHNRAVQTVLNWCKIPFSNKN--HTF 572

Query: 1332 PSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNF 1511
            P  C AC +GKS   +   S T+  KP E++H D+WGPAP  S  G+ YY+ FVD YT +
Sbjct: 573  P--CIACAVGKSHRLYAPLSNTMYIKPFEVVHCDLWGPAPFASYYGYNYYIAFVDTYTKY 630

Query: 1512 TWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPC 1691
            TW Y L  KS+    F  F  L++ +F+  IK +QSDWGGE+R    +L +LGI  R  C
Sbjct: 631  TWFYLLNQKSDALKAFNQFVKLIQNQFQATIKVVQSDWGGEFRPFTSLLDSLGIQHRLTC 690

Query: 1692 PHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL-NHQSP 1868
            PHT  QNG  ERKHR IVEMGLTLL+QAS+PL++W  +F  +  LIN L +  L + +SP
Sbjct: 691  PHTSHQNGTVERKHRQIVEMGLTLLSQASLPLKFWDHSFTQAVHLINKLPSSALPSFKSP 750

Query: 1869 IEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGK 2048
                             GC CFPH++ YN++K+ FRS+ CV++G SP HKG+KCL  +GK
Sbjct: 751  HHLLFNTCPEYTNLKVFGCLCFPHLRPYNKNKIQFRSSPCVYLGVSPQHKGHKCLDTNGK 810

Query: 2049 IYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXXXXXX 2228
            IY+++ VTF+E  FP+++ F +     S   S  S     H  P      Q+        
Sbjct: 811  IYVSKDVTFHESNFPYTTLFSSDLSSQSNHSSNLSTDLNLHSPPLT--VEQINSLISQPI 868

Query: 2229 XXXXXXXEAP-PRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXX 2405
                    +P P + ++  PP +S                    + ND            
Sbjct: 869  TNSEPNIASPLPLHKTTSPPPPIS--------------------LHND------------ 896

Query: 2406 XXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWK 2585
                          M+TR K G  KPKT+ +S            I P +V+ A   P+W 
Sbjct: 897  ------------HSMITRGKTGSLKPKTFTAS------------IEPTTVKTALADPQWA 932

Query: 2586 HAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQP 2765
             AM+ EY AL+ NHTW LVP   H   +  K +F+IK N DGSV ++KARLVAKGF Q P
Sbjct: 933  QAMNTEYKALMDNHTWSLVPLPPHRRAIGCKWIFKIKENPDGSVNKYKARLVAKGFHQTP 992

Query: 2766 RIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
              DF ETFSPV+KP              W +QQI
Sbjct: 993  GFDFNETFSPVIKPVTIRLILTLAVTYKWPVQQI 1026


>dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subterraneum]
          Length = 1432

 Score =  550 bits (1418), Expect = e-173
 Identities = 347/997 (34%), Positives = 493/997 (49%), Gaps = 47/997 (4%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL++IS+++   V+ C  SHEVW  +   F +  K+RI QLR +L++ KK   
Sbjct: 97   DQTLFTWLLSTISDSVLPRVLHCKHSHEVWDKIHKYFNSVLKSRIRQLRSELKNTKKLAR 156

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            S+++Y+L++KS+ ++L + G  IS+ E I  IL GL ++++S V+ + SR D  T+++V+
Sbjct: 157  SVSEYLLRIKSIINSLIAMGESISEQEQIDAILDGLSEEFNSFVMMVYSRFDNPTVEDVE 216

Query: 378  YMLQSQEIRLEQLHLSLPTDTTLPTAHLA---------------TQLRNSLHLQGPSTNX 512
             +L  QE + ++    L   +   +A++A               T+  N  +        
Sbjct: 217  GLLMLQEAQFDKFRQELTNPSV--SANVAQMDSKNQHPNQEVEDTESGNEHYTFNTYRGK 274

Query: 513  XXXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFD--ISFHGQXXXXXXXXXX 686
                                   CQ+C+K  H A+ C+ R++   S              
Sbjct: 275  GRGRGKAKARGKAPNALNNGKVQCQICSKSNHDAANCWYRYEPPSSRTNGRGYNAGNTSR 334

Query: 687  XXXXXXXXXXXXXXXXXAYYSTTT--DTQSDNSWYLDSGATNHITADPSNLHHPTEYKGI 860
                              YY+ T   DT S+ SWY DSGA++H+T +P+N+ + T Y+G 
Sbjct: 335  PPLYNPYPRPSAHLALPQYYNPTAEFDTYSNASWYPDSGASHHLTFNPNNMAYRTPYQGQ 394

Query: 861  NHLLIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTKDNPVFV 1037
            + + +GNGQ +  +  G S+ Y  +  S  L LNNLL VP I+KNLLS+S+  +DN VF 
Sbjct: 395  DQVTMGNGQGVSTASLGYSNFYAPNNPSVQLKLNNLLHVPNISKNLLSVSRFARDNNVFF 454

Query: 1038 EFYHDYCSVKEQTSKRELLRGVLS-EGLYRLQLHQTPTTSPATSHHMLSCVSKRPAH--- 1205
            EF+  YC VK Q SK+ LL G +  +GLY+ +  +    +P  S++ LS  SK P+H   
Sbjct: 455  EFHPHYCYVKSQVSKQTLLEGTVGPDGLYKFKPFEI---TPIKSNN-LSTQSKFPSHKST 510

Query: 1206 ---------------FQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML-------SNKEL 1319
                                           WH+RLGH ++  ++ +L       SNKE 
Sbjct: 511  SFFPSLNSLFNNKVQCNNALSNEHLASSFYKWHLRLGHAHSRAVQTVLNWCKIPFSNKES 570

Query: 1320 LSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDD 1499
            ++     C AC +GKS   +   S TV TKP E+IH D+WGPAP +S  G+ YY+ FVD 
Sbjct: 571  VA----LCIACAVGKSHTLYAPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYIAFVDT 626

Query: 1500 YTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHF 1679
            YT +TWIY L  KS+    F  F  L++ +F+  +K +QSDWGGE+R    +L TLGI  
Sbjct: 627  YTKYTWIYFLNQKSDALKAFNQFLTLIQTQFQATVKAVQSDWGGEFRPFTSLLNTLGIQH 686

Query: 1680 RHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL-N 1856
            R  CPHT  QNG  ERKHR IVEMGLTLL+QAS+PL++W  +F  +  LIN L +  L +
Sbjct: 687  RLTCPHTSHQNGTVERKHRQIVEMGLTLLSQASLPLKFWDHSFTQAVHLINKLPSSALPS 746

Query: 1857 HQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLH 2036
             +SP                 GC CFPH++ YN++KL FRS+ C ++G SP HKG+KCL 
Sbjct: 747  FKSPHHMLFNVCPDYSQLKVFGCLCFPHLRPYNKNKLQFRSSPCTYLGISPQHKGHKCLD 806

Query: 2037 PSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXX 2216
              GKIY+++ V F+E  FP         F      + SS +  S+  P     SQ     
Sbjct: 807  AQGKIYVSKDVIFHESNFP---------FTTLVPSASSSQVDPSNASP-----SQEPNTT 852

Query: 2217 XXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXX 2396
                        + P N S  +PPS                                   
Sbjct: 853  SPLTVEQVNSIISQPINYSQPTPPSSG--------------------------------V 880

Query: 2397 XXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSP 2576
                             M+TR K G  KPKTY +S            I P +V+ A   P
Sbjct: 881  QTNNSPTQSISNHNEHNMITRGKTGNLKPKTYTAS------------IEPTTVKGALADP 928

Query: 2577 EWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQ 2756
            +W  AM  EY AL+ NHTW LVP  SH   +  K +FRIK N DGSV ++KARLVAKGF 
Sbjct: 929  QWAQAMKTEYKALMDNHTWSLVPLPSHRKAIGCKWIFRIKENPDGSVNKYKARLVAKGFL 988

Query: 2757 QQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            Q P  DF ETFSPV+KP              W +QQI
Sbjct: 989  QTPGFDFKETFSPVIKPVTIRLILTLAVTYKWTVQQI 1025


>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1418

 Score =  549 bits (1415), Expect = e-172
 Identities = 339/1006 (33%), Positives = 507/1006 (50%), Gaps = 56/1006 (5%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ + +WLL+++S+++   V+ C  +HEVW  +   F +  K+R  QLR +L++ KK + 
Sbjct: 95   DQTLFTWLLSTMSDSVLPRVLSCKHAHEVWDKIHRYFNSVLKSRARQLRSELKNTKKLSR 154

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            S+N+Y+L++KS+ ++L + G  +S+ E +  IL GL ++++  V+ + SR +  T+++V+
Sbjct: 155  SVNEYLLRIKSIVNSLVAVGDTVSEQEQVDAILEGLPEEFNPFVMMVYSRFETPTVEDVE 214

Query: 378  YMLQSQEIRLEQLHLSLPTDT-TLPTAHLATQLRNSL-----------HLQGPSTNXXXX 521
             +L  QE++ ++    L   + +   AH  T++ NS            H    ++     
Sbjct: 215  ALLLLQEVQFDKFRQELANPSVSANVAHKETKVNNSEMDAEDQESGTEHYNVTASRGRGR 274

Query: 522  XXXXXXXXXXXXXXXXXXPL-CQLCNKPGHIASKCYRRFDI--SFHGQXXXXXXXXXXXX 692
                               + CQ+C K  H A+ C+ R+D   S                
Sbjct: 275  GKGKGKGRGKAPFVPNTGKVQCQICGKSNHDAANCWFRYDPPNSRPNARGHNAGFTSRQP 334

Query: 693  XXXXXXXXXXXXXXXAYYSTTTD--TQSDNSWYLDSGATNHITADPSNLHHPTEYKGINH 866
                            YY+   D  T S  SWY DSGA++H+T +P+N  +   Y+G + 
Sbjct: 335  HYNPYPRPSAHLAIPQYYNPIPDMDTVSTASWYPDSGASHHLTFNPNNFAYRVPYQGQDQ 394

Query: 867  LLIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTKDNPVFVEF 1043
            + +GNGQ + I   G S+  + + Q+  L LNNLL VP I+KNLLS+S+  +DN VF EF
Sbjct: 395  VSMGNGQGVSIQSLGHSNFTSPYNQNVHLKLNNLLHVPTISKNLLSVSKFAQDNCVFFEF 454

Query: 1044 YHDYCSVKEQTSKRELLRGVL-SEGLYRLQ----LHQTPT-----TSPATSHHMLSC--- 1184
            +  +C VK Q SK+ LL+G++ S+GLY+ Q     H   T     +SP +S H  +    
Sbjct: 455  HPHFCYVKSQDSKQILLKGIVGSDGLYKFQPFDFTHNLDTNSNSQSSPVSSLHQSASPMS 514

Query: 1185 ----VSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML-------SNKELLSTA 1331
                V  +  H                WH+RLGH ++  +  +L       SNK  +   
Sbjct: 515  SQISVFNKAVHCNNALSNRNIDSTFYTWHLRLGHAHSKAVETVLKWCNIPYSNKSAIIP- 573

Query: 1332 PSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNF 1511
               C +C  GKS  ++   S T  TKP E+IH D+WGPAP +S  G+ YY+ FVD YT +
Sbjct: 574  ---CVSCCAGKSHRQYAPLSNTNYTKPFEVIHCDLWGPAPFVSYYGYNYYITFVDTYTKY 630

Query: 1512 TWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPC 1691
            TWIY L  KS+    F  F   ++ +F+  +K LQSDWGGE+RS   +L + GI  R  C
Sbjct: 631  TWIYFLNQKSDALKAFTQFLAYIKNQFQASVKALQSDWGGEFRSFTSLLNSFGIQHRLTC 690

Query: 1692 PHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL-NHQSP 1868
            PHT  QNG  ERKHR IVEMGLTLL+QAS+PL++W  +F  + +LIN L +  L + +SP
Sbjct: 691  PHTSHQNGTVERKHRQIVEMGLTLLSQASIPLKFWDHSFTQAVYLINRLPSSALPSFKSP 750

Query: 1869 IEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGK 2048
              A              GC CFPH++ YN++KL +RS+ C+++G SP HKG+KCL   G+
Sbjct: 751  YHALFNACPDYTQAKTFGCLCFPHLRPYNKNKLQYRSSPCIYLGISPQHKGHKCLDEHGR 810

Query: 2049 IYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSN---------IQYSHWLPFLSHSSQ 2201
            IY+++ V+F E +FP+++ F T    NS++ S  SN         +Q +  L     +S 
Sbjct: 811  IYVSKDVSFYESQFPYTTLFPT----NSDNLSTHSNNPTPSPLLAVQQNPPLTITQINSL 866

Query: 2202 VQEXXXXXXXXXXXXXEAPPRNLSSDS----PPSLSQGXXXXXXXXXXXXXXXXAPVIND 2369
            + +              +PP N ++ S    PPS+S                        
Sbjct: 867  ISQ----------PETSSPPSNQTTHSSISTPPSISNN---------------------- 894

Query: 2370 XXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPD 2549
                                      M+TR K G  KPKT+ +S            I P 
Sbjct: 895  ----------------------NNHPMITRGKTGHLKPKTFTAS------------IEPT 920

Query: 2550 SVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHK 2729
            +++ A  SP+W  AM  EY AL+ N+TW LVP   H   +  K +FR+K N DGSV ++K
Sbjct: 921  TIKSALASPQWLQAMKSEYKALMDNNTWSLVPLPPHKKAIGCKWIFRVKENPDGSVNKYK 980

Query: 2730 ARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            ARLVAKGF Q P  DF ETFSPV+KP              W +QQI
Sbjct: 981  ARLVAKGFLQTPGFDFTETFSPVIKPVTVRIILTLAVTYRWSVQQI 1026


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  549 bits (1414), Expect = e-171
 Identities = 343/999 (34%), Positives = 488/999 (48%), Gaps = 46/999 (4%)
 Frame = +3

Query: 9    IRMDQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKK 188
            +  DQ + +WLL+++S+ +   V+ C  +++VW  +   F +  KAR  QLR +L++ KK
Sbjct: 106  LMQDQTLFTWLLSTLSDGVLPRVLGCKHAYQVWDKIHKYFNSLLKARARQLRSELKNTKK 165

Query: 189  GNLSINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQ 368
               SI +Y+L++K++ D+L++ G  +SD E I  IL GL ++++S V+ + SR D  T++
Sbjct: 166  LARSIGEYLLRIKTIIDSLTAIGDTVSDQEHIDAILEGLPEEFNSFVMMIYSRLDTPTVE 225

Query: 369  EVQYMLQSQEIRLEQLHLSLPT---DTTLPTAHLATQLRNSLHLQ--------GPSTNXX 515
            +V+ +L  QE + E+    L +      L  +   T   +  H                 
Sbjct: 226  DVEALLMVQEAQFEKFRQELASPNVSANLAQSEAKTSAESVNHENTEVGTEHYAAGGKGR 285

Query: 516  XXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFD-------ISFHGQXXXXXX 674
                                  CQ+C K GH AS C+ R+D         F G       
Sbjct: 286  GRGRGRGRGRGRSSKNPHSDSTCQICGKNGHEASGCWYRYDPNPTPKQFKFPG-FASSSN 344

Query: 675  XXXXXXXXXXXXXXXXXXXXXAYYSTTT----DTQSDNSWYLDSGATNHITADPSNLHHP 842
                                  YY+ +        S+  WY DSGAT+H+T +  NL   
Sbjct: 345  PSMRPPSYNPYMRPNANLAFNPYYAMSEYGAPSVYSEAPWYPDSGATHHLTFNQQNLAQR 404

Query: 843  TEYKGINHLLIGNGQSLFISHYGSSSLYNSHTQST-LILNNLLCVPKITKNLLSISQLTK 1019
            + Y G   +L+GNGQ + I+  G S + +    +  L LNNLL VP I+KNL+S+S+  +
Sbjct: 405  SPYTGQEQVLMGNGQGVCINSLGHSKIQSQFKPNIQLSLNNLLHVPNISKNLISVSKFAQ 464

Query: 1020 DNPVFVEFYHDYCSVKEQTSKRELLRGVL-SEGLYRLQ----LHQTPTTSPATSHHMLSC 1184
            DN V  EF+   C VK Q SK+ LL G + ++GLY+ Q    LH++     + S ++ S 
Sbjct: 465  DNKVIFEFHPYKCFVKCQASKQVLLEGFVGTDGLYQFQPLQLLHKSDVNHKSKSANVSSF 524

Query: 1185 VSKRPAHF--QXXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKELL---STAPSFCNA 1349
             +   +                   WH+RLGH + N ++ +L+  ++      A  FCNA
Sbjct: 525  NNSNTSSVACNSAITANSFVNNFQNWHLRLGHSHANAVKSVLNLCKIPFNNKNALDFCNA 584

Query: 1350 CRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPL 1529
            C +GKS   H   S T+ + P E+IH D+WGPAP  S  G+ YY+ FVD  T FTWIY L
Sbjct: 585  CSVGKSHKLHAPLSLTIHSNPFEVIHCDLWGPAPSTSYYGYNYYITFVDACTKFTWIYFL 644

Query: 1530 KLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQ 1709
            K K++    F  F  L++ +F+T IK LQSDWGGE+RS   +L +LGI  R  CPHT  Q
Sbjct: 645  KSKADALAAFKQFNTLIQNQFQTTIKALQSDWGGEFRSFTTMLSSLGIKHRLTCPHTSHQ 704

Query: 1710 NGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL-NHQSPIEAXXX 1886
            NG  ERKHR IVEMGLT+++QAS+PL+YW  +F  S FLIN L +  L  H SP  A   
Sbjct: 705  NGIVERKHRQIVEMGLTIMSQASIPLKYWDHSFTQSVFLINRLPSSALPTHTSPYHALYN 764

Query: 1887 XXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQS 2066
                       GC+CFPH++ YN+HK   RS++CV++G SP HKG+KCL   G+IYI++ 
Sbjct: 765  VIPSYTDIKIFGCSCFPHLRPYNKHKFQLRSSQCVYLGVSPQHKGHKCLSADGRIYISKD 824

Query: 2067 VTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQV------------QE 2210
            V F+E  FP+S  F T    +S   + SS+  Y   +P    SSQ               
Sbjct: 825  VKFDELTFPYSKLFKTCVASSSSCDTPSSS--YPATIPIYDLSSQTNTTPTHSLNVSNHS 882

Query: 2211 XXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXX 2390
                          +P    SS++ PS S                  AP           
Sbjct: 883  NFSNNPSISPNHTNSPTSTSSSNTSPSPSPPPSNIQPPDDNPPPINNAPA---------W 933

Query: 2391 XXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFL 2570
                               M+TR K G  KPK +L            T + P +V+ A  
Sbjct: 934  IPTPTPEPITVVSNHNNHPMVTRGKTGNLKPKAFL------------TQLEPKTVRHALA 981

Query: 2571 SPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKG 2750
              +W  AM DEY+AL+ N TWDLVP   H   +  + +FR+K N DGSV + KARLVAKG
Sbjct: 982  DSKWLAAMKDEYHALMHNKTWDLVPLPPHKKAIGCRWIFRVKENPDGSVNKFKARLVAKG 1041

Query: 2751 FQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            F Q    DF ETFSPV+KP            N W +QQI
Sbjct: 1042 FHQIAGYDFTETFSPVIKPITIRIILTLAVTNKWTVQQI 1080


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  536 bits (1382), Expect = e-171
 Identities = 349/1009 (34%), Positives = 488/1009 (48%), Gaps = 60/1009 (5%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            D  +LSWL +++S  +   ++ C+ SHE+W  L   F    +A+   LR +L++    + 
Sbjct: 94   DGMLLSWLQSTLSSEILTRMIGCSFSHELWDRLFAYFQKQIRAKARHLRVELRTHTLADR 153

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            S+ +Y+L+++   D L+S G  +     I  IL GL  D+  VV  +  R D I L EV+
Sbjct: 154  SVKEYLLQIRKTVDALASIGDPLPPSHHIDVILEGLPSDFAPVVSVIEGRFDAIDLDEVE 213

Query: 378  YMLQSQEIRLEQLHLSLPTDT--------TLPTAHLATQLRNSLHLQGP----------S 503
             +L + E+R+E+    + +D         +  TA +     N    + P          S
Sbjct: 214  VLLLAHELRMEKFKKRVISDVASLNLTHASSSTAPVTNGDSNETPTESPPPPSPEPDYNS 273

Query: 504  TNXXXXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHG---------- 653
                                      CQ+C K GH A  C+ RF+  F G          
Sbjct: 274  FRGSRGGRGGRGGRGGRGRGRNSDLQCQVCAKFGHSALNCWHRFNQQFQGNPAPPVPQPR 333

Query: 654  --------------QXXXXXXXXXXXXXXXXXXXXXXXXXXXAYYSTTTDTQSDNSWYLD 791
                          Q                           + + T     + NSW+ D
Sbjct: 334  YGNPYGNPYGNAPPQAFGYAPFPPQNTWMRPPAQAQLTMAPPSAFLTNAAPSTSNSWFPD 393

Query: 792  SGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYN-SHTQSTLILNNLL 968
            SGA+ H+T D  NL   T ++G + + IGNGQ L I   GSS+  + +H    L LNNLL
Sbjct: 394  SGASFHVTGDSRNLQQLTPFEGHDQIYIGNGQGLPILSSGSSTFPSPTHPHLNLTLNNLL 453

Query: 969  CVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VLSEGLY-----RLQ 1130
             VP ITKNL+S+SQ  KDN V+  F  + C VK Q +   LL+G V S+GLY     RL 
Sbjct: 454  HVPHITKNLISVSQFCKDNSVYFVFTSNECLVKSQANNATLLQGQVGSDGLYEFPAIRLH 513

Query: 1131 LHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXX---WHMRLGHPNNNVMRHM 1301
              + P    + S +    V+K P+                    WH+RLGHP++N ++ +
Sbjct: 514  TGKPPLVPKSLSSNSSMSVAKFPSVNSLTVANNPVCITQNSQYMWHLRLGHPHSNTLKLV 573

Query: 1302 L--------SNKELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPIL 1457
            L        SNK++     +FC AC +GK+   H   S T  T PLE++ SD+WGP+P  
Sbjct: 574  LQHCKIPFNSNKDV----STFCTACCMGKAHKLHSLPSHTQYTHPLELVFSDLWGPSPQP 629

Query: 1458 SKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEY 1637
            S  G+ YY+ FVD Y+ FTWIY LK KS+   IF  F+ +VE +F   +K LQ+DWGGE+
Sbjct: 630  STLGYNYYITFVDAYSRFTWIYLLKSKSDAFIIFKQFKAMVELQFGHSLKALQTDWGGEF 689

Query: 1638 RSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTS 1817
            R     L+ LG+  R  CPHTH QNG  ERKHRHIV++GLTLL+QAS+PL YW  AF T+
Sbjct: 690  RPFTKFLKDLGVIHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQASLPLSYWDYAFLTA 749

Query: 1818 AFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFI 1997
             +LIN L +  L+ + P                 GCACFP ++ YN HKLD+RS +C+F+
Sbjct: 750  VYLINRLPSAPLDFKIPYTLLFHQDPDYKFLKVFGCACFPLLRPYNTHKLDYRSHECLFL 809

Query: 1998 GYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWL 2177
            GYSP+HKGY+CL P+G+++I++ V FNE  FPF   F +    +S   S+SS +  S  +
Sbjct: 810  GYSPSHKGYRCLSPNGRLFISKDVIFNESRFPFIDLFTS---PHSVVPSKSSAVTLSPLV 866

Query: 2178 PFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAP 2357
               SHS                   +P  ++ +  PPS S                   P
Sbjct: 867  HHPSHSPS--------------PTSSPSPSIPNSPPPSASSPVVSPTSPPVTSPESLSPP 912

Query: 2358 VINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTT 2537
                                          MLTR+K G  +P+     LL        T 
Sbjct: 913  ---------NAPPIPPKAKPVVHKPSNLHPMLTRAKDGFTQPRLEPRLLL--------TH 955

Query: 2538 ITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSV 2717
            I P SV+QA   PEWK AM  EY+AL+ N+TW LVP  S  + +  K VFR+K NSDG++
Sbjct: 956  IEPASVKQALQVPEWKTAMQAEYDALLANNTWTLVPLPSDRSSIGCKWVFRVKQNSDGTL 1015

Query: 2718 QRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQ 2864
             ++KARLVAKGF Q+  IDF ETFSPVVKP              W +QQ
Sbjct: 1016 NKYKARLVAKGFHQRHGIDFTETFSPVVKPVTIRLILTLAITQKWSLQQ 1064


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  528 bits (1360), Expect = e-166
 Identities = 338/984 (34%), Positives = 486/984 (49%), Gaps = 37/984 (3%)
 Frame = +3

Query: 27   ILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNLSIN 206
            +L+WL +++S+++   V+    S++VW  +   F T +KA   QLR  L++      ++ 
Sbjct: 2    LLTWLQSTLSKSILSRVIGSVHSYQVWEKIHEYFHTQTKACARQLRTDLRTTSLDGKTMR 61

Query: 207  DYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQYML 386
            +++ ++K++AD L+  GH    DE +  IL GL QDY  VV  + S+     + EV+ +L
Sbjct: 62   EFLSQIKNIADELAGVGHPFPLDEYVDAILEGLPQDYAPVVSVIESKFATPPIAEVEALL 121

Query: 387  QSQEIRLEQLHLSLPTDTTLPTAHLATQLRNSLHLQGPSTNXXXXXXXXXXXXXXXXXXX 566
             + E R  +      + +   T   A   R S++  G ++                    
Sbjct: 122  LAHESRNNRFCKQSFSPSINYTHGYA---RGSVNHGGGNSGRRGGSSGRGRGGRFANFQ- 177

Query: 567  XXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXAYY 746
                 CQ+C K  H A+ C+ R D ++H                             ++ 
Sbjct: 178  -----CQICLKYSHTANICFYRADANYHPHDSLVLYDPSTLQPVQVNSPPSITKTSNSWG 232

Query: 747  STTTDTQS-----------------------DNSWYLDSGATNHITADPSNLHHPTEYKG 857
            + T+   S                       +++W  DSGA+ H+T +P N+H    + G
Sbjct: 233  NPTSKQPSQDTNVNSVTPSAMLANTPSQGAVNSTWIPDSGASFHVTGEPQNVHQLGHFDG 292

Query: 858  INHLLIGNGQSLFISHYGSSSLYNSHTQSTLI-LNNLLCVPKITKNLLSISQLTKDNPVF 1034
             + + IGNGQ L I+  G SS  +    +    LN+LL VP ITKNLLS+S+  KDN V+
Sbjct: 293  PDQIFIGNGQGLHINGSGFSSFLSPIKSNFCFKLNDLLHVPSITKNLLSVSKFAKDNSVY 352

Query: 1035 VEFYHDYCSVKEQTSKRELLRGVL-SEGLYRLQLHQTPTTSPATSHHMLSCVSKRPAHFQ 1211
             EF+   C VK Q +   LL+GV+ S+GLY     +    S   S  M S V    + F 
Sbjct: 353  FEFHSHCCFVKSQVTNEILLQGVVGSDGLYSFSNLELQGPSVLVSSSMASSVDPAVSAFA 412

Query: 1212 XXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKELLST---APSFCNACRIGKSKHKHY 1382
                          WH RL HPN++V++ +L++  +  +      FC++C +GKS     
Sbjct: 413  IPSSHTS-------WHTRLSHPNSHVLKLVLNHCNIAPSNRNVSEFCSSCCVGKSHRLPS 465

Query: 1383 SSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFL 1562
              S +V + PL++I +D+WGP+ ++S  G+ YYV F+D ++ FTWIYPLK KS+   +F 
Sbjct: 466  LVSESVYSAPLDLIFTDLWGPSHVVSHSGYVYYVSFIDAFSKFTWIYPLKSKSDTLSVFQ 525

Query: 1563 HFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHI 1742
             F+ +VE +  TKIK++QSDWGGEYRS    L T GI  R  CPHTH QNG  ERKHRHI
Sbjct: 526  QFKAMVELQLNTKIKSIQSDWGGEYRSFTAFLATHGITHRLICPHTHHQNGVVERKHRHI 585

Query: 1743 VEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXG 1922
            V++G+TLL  AS+PL +W  AF+T+ +LIN L T +LN   P                 G
Sbjct: 586  VDIGITLLHHASLPLTFWDYAFSTAVYLINRLPTASLNFDIPFTVLFKQTPDYKFLKTFG 645

Query: 1923 CACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSS 2102
            CACFP ++ Y  HKLDFRS +CVF+GYS +HKGYKCL  SGKIYI++ V FNE  FP+  
Sbjct: 646  CACFPFLRPYTTHKLDFRSQECVFLGYSNSHKGYKCLSASGKIYISKDVIFNETRFPYLD 705

Query: 2103 GF-HTS--------FFKNSESFSQSSNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEA 2255
             F HTS        +F  +   S   +   +  LPF+  S                   +
Sbjct: 706  LFQHTSTPVPSPSQYFTLNPDLSPPCSHTTASSLPFIPVSE--------------TSNHS 751

Query: 2256 PPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXXXXXXXXXXXXXXXX 2435
               N+ S S P++SQ                 +  IN+                      
Sbjct: 752  GQDNILSVS-PTVSQFNSTPSSPVSSTPTNTVSRTINN---------------------- 788

Query: 2436 XXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNAL 2615
                M TRSK GI+KPK   S  L +          P +V+QA   P+W  AM  EY+AL
Sbjct: 789  --HSMQTRSKSGIYKPKMPPSLFLAHS--------EPKNVKQALSDPDWFSAMKQEYSAL 838

Query: 2616 IRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSP 2795
            ++NHTWDLVP  S+   V  K VFR+K N+DGS+ + KARLVAKGF Q    DF ETFSP
Sbjct: 839  LQNHTWDLVPLPSNRQAVGCKWVFRVKENADGSINKFKARLVAKGFHQVHGFDFHETFSP 898

Query: 2796 VVKPXXXXXXXXXXXXNNWDIQQI 2867
            V+KP             NW + Q+
Sbjct: 899  VIKPITIRIIITLALTYNWHLFQL 922


>gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygrometricum]
          Length = 706

 Score =  509 bits (1311), Expect = e-165
 Identities = 281/698 (40%), Positives = 398/698 (57%), Gaps = 8/698 (1%)
 Frame = +3

Query: 12   RMDQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKG 191
            R DQ + S+LL S+SE+    ++ C TS ++W  +  LF T SKAR++Q + QLQ+LKKG
Sbjct: 20   RQDQLLFSFLLASMSESAQSQMIGCQTSSQLWTRVTQLFATRSKARVMQYKLQLQTLKKG 79

Query: 192  NLSINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQE 371
            NLS+ DY+ KMK   D L++ G+ I +D+ IL+ILGG+G +Y+SVVV++TSR + ++L E
Sbjct: 80   NLSMKDYLGKMKGYIDILAACGNSIPEDDQILHILGGVGPEYESVVVHVTSRVESLSLSE 139

Query: 372  VQYMLQSQEIRLEQLHLSLPTDTTLPTAHLAT--QLRNSLHLQGPSTNXXXXXXXXXXXX 545
            V  +L + E R+E  +++    T  P+ ++ T    R + +                   
Sbjct: 140  VGALLLAHEGRIETYNIT-GGHTASPSVNVTTAPSQRKAENTSQSQPVYRGRGRGRNGRG 198

Query: 546  XXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXX 725
                      P+CQ+C  PGH+A  CY RFD  F                          
Sbjct: 199  GRKPWHNNGRPVCQICGIPGHVAEICYYRFDKEF-----VPKSSGVSRTSQQQFNRSSPS 253

Query: 726  XXXXAYYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISH 905
                A+ ST +++ S+  WY DSGA++H+T D  NL   +EY G + + +GNG  L IS+
Sbjct: 254  YPPSAFASTKSESASEEWWYPDSGASHHVTNDLGNLSVSSEYTGGSKVQVGNGAGLSISN 313

Query: 906  YGSSSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKR 1085
             G S+L    +    +L NLL VP ITKNL+S+S+   DN V+ EF+  +C VK+  +  
Sbjct: 314  IGESNLNMFPSSRPFLLKNLLHVPLITKNLISVSKFAYDNHVYFEFHPSFCLVKDPATHV 373

Query: 1086 ELLRGVLSEGLYRLQLHQT---PTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXW 1256
             LLRG L  GLYR  L      P  SPA     +S     P                  W
Sbjct: 374  VLLRGTLHNGLYRFNLKSRISGPLHSPACLQSSVS-----PIKVPDQSPLCLPQNTLDKW 428

Query: 1257 HMRLGHPNNNVMRHMLSN-KELLSTAP--SFCNACRIGKSKHKHYSSSFTVTTKPLEIIH 1427
            H+RLGHP+   ++ +L +  E +S     SFC++C++GK+    +  S T  + P E+++
Sbjct: 429  HLRLGHPSIATVKQVLLDCNERISKNDNISFCSSCQLGKNHLLPFPQSTTNFSAPFEVVY 488

Query: 1428 SDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIK 1607
            SD+WGPA I S++G RYY+ FVD YT +TWIY LKLKSEV   F++FQ   E  F  KIK
Sbjct: 489  SDLWGPAHIPSRNGSRYYISFVDAYTRYTWIYFLKLKSEVTQTFINFQKYTELHFNAKIK 548

Query: 1608 TLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPL 1787
            TLQ+D GGE+RSL    Q+ GI  R  CP+T  QNG  ERKHRH+V+ GL+LL  AS+P 
Sbjct: 549  TLQTDGGGEFRSLTAYCQSNGILHRFSCPYTSKQNGVVERKHRHVVDTGLSLLAHASLPF 608

Query: 1788 QYWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKL 1967
            ++W +AF ++ +LIN L +P+L  +SP                 GC CFP ++ YN HKL
Sbjct: 609  EFWEDAFFSAVYLINRLPSPSLGAKSPFFCLYGRRPDYSHLRVFGCLCFPCLRPYNTHKL 668

Query: 1968 DFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNE 2081
             FRST C F+GYS +HKGYKCLH SG++YI++ V FNE
Sbjct: 669  AFRSTPCTFLGYSEHHKGYKCLHSSGRVYISRHVQFNE 706


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  520 bits (1339), Expect = e-161
 Identities = 338/1019 (33%), Positives = 483/1019 (47%), Gaps = 69/1019 (6%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ +LSWL ++++  +   ++ C  +HE+W  L + F   ++AR   LR +L++    + 
Sbjct: 103  DQMLLSWLQSTLTGEILSRMIGCAHAHELWDRLFSYFHKQTRARARHLRVELRAKTLADS 162

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
            SI+DY+L ++ + D L+S G  +     I  IL GL  +Y   + ++ SR D + L EV+
Sbjct: 163  SISDYLLSIRQIVDELASIGDPLPVPHHIDVILEGLPSEYSPAISSIESRFDVLDLDEVE 222

Query: 378  YMLQSQEIRLEQ-------------LHLSLPTDTTLPTAHLATQLRNSLHLQGPSTNXXX 518
             +L + E+RL +             L  + P  TT      +T    S     P  N   
Sbjct: 223  VLLLAHELRLNKYKKQTVSDAASLNLTHAAPMQTTTEAGSSSTAEPASPPAHEPDYNSFR 282

Query: 519  XXXXXXXXXXXXXXXXXXXP--LCQLCNKPGHIASKCYRRFDISFH-------GQXXXXX 671
                                   CQ+C+K GH A  C+ RF+  F         Q     
Sbjct: 283  GGRRGGRGGRGGRGRGGRNADIQCQVCSKWGHAAFNCWHRFNQQFQPPGGAVGAQGMPHN 342

Query: 672  XXXXXXXXXXXXXXXXXXXXXXAYY--------------STTTDTQSDNSWYLDSGATNH 809
                                   YY               T+    S +++  ++ +++H
Sbjct: 343  AFMAYGNHPPYGYHPPAYGNHNGYYPPANTWMRPAYNPRPTSIPANSPSAFITNAASSSH 402

Query: 810  ------------------ITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNSH 935
                              +T D SNL   T ++G +H+ IGNGQ L IS  G+S+  +  
Sbjct: 403  AGPASSASWYPDSGASFHVTNDASNLQQLTPFEGHDHIYIGNGQGLHISSAGTSTFPSPF 462

Query: 936  TQS-TLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VLS 1109
              +  L L+NLL VP ITKNLLS+SQ  KDN V+  F  + C VK Q +   LL+G V S
Sbjct: 463  APNHPLTLHNLLLVPSITKNLLSVSQFCKDNDVYFLFSANTCLVKSQATDATLLKGHVGS 522

Query: 1110 EGLYR---LQLH---QTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLG 1271
            +GLY    + LH    +P  S A+ +   +C                       WH RLG
Sbjct: 523  DGLYEFPAVSLHSAKSSPLVSLASVNSTSTC----------NKVSSLAPSSHYLWHQRLG 572

Query: 1272 HPNNN----VMRH---MLSNKELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHS 1430
            HP++N    VM+H    ++NK+    +  FC AC +GK+   H   S T  + PLE+++ 
Sbjct: 573  HPSHNSFKLVMQHCNFTVNNKD----SSQFCAACCMGKAHRLHSPLSHTTYSAPLELVYC 628

Query: 1431 DVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKT 1610
            D+WGP+P  SK G+ YY+ FVD Y+ FTWIY LK KS+   IF  F+++VE +F   +K 
Sbjct: 629  DLWGPSPSPSKQGYHYYISFVDAYSKFTWIYLLKSKSDALLIFKQFKSMVELQFGHPLKA 688

Query: 1611 LQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQ 1790
            LQ+DWGGE+R     L  LG+  R  CPHTH QNG  ERKHRHIV++GLTLL+QA++P+ 
Sbjct: 689  LQTDWGGEFRPFTKFLTELGVVHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQATLPIT 748

Query: 1791 YWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLD 1970
            +W  AF T+ +LIN L + ++N Q+P                 GCACFP ++ Y+ HKL+
Sbjct: 749  FWDYAFPTAVYLINRLPSSSINFQTPYFLLFKQHPDYHFLKVFGCACFPLLRPYHNHKLE 808

Query: 1971 FRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQS 2150
            FRS +C+F+GYSP+HKGY+CL PSG++Y+++ V FNE  FP+   F  S      S S  
Sbjct: 809  FRSQECLFLGYSPSHKGYRCLSPSGRLYVSKDVLFNESRFPYKELFPIS------SGSSH 862

Query: 2151 SNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXX 2330
            S    S  LP L     +                +PP  ++  SPP+             
Sbjct: 863  SPPSKSFKLPPLPTFPSITTDITSPLPPTAPHISSPPTPINDPSPPN-----SPLSATAS 917

Query: 2331 XXXXXXXAPVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLK 2510
                    P  +                           M TR+K G  +PK  ++    
Sbjct: 918  DQSSPLSTPSPSTASSTSHHVSIPPRAVPVPIIPVNAHNMQTRAKSGFKQPKLLVAH--- 974

Query: 2511 NPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFR 2690
                       P SV+QA L P W  AM  EY+AL+ N+TW LVP       +  K VFR
Sbjct: 975  ---------SEPKSVKQALLDPSWHAAMQTEYDALLNNNTWTLVPLPPDRQAIGCKWVFR 1025

Query: 2691 IKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            IK N DG+V ++KARLVAKGF Q+   DF ETFSPVVKP              W IQQ+
Sbjct: 1026 IKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKPVTIRVILTIAITKGWSIQQL 1084


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  501 bits (1291), Expect = e-157
 Identities = 275/686 (40%), Positives = 392/686 (57%), Gaps = 8/686 (1%)
 Frame = +3

Query: 75   VVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNLSINDYMLKMKSLADNLSSA 254
            ++ C TS ++W   ++L   H+++RI  L+ +    +KG L + +Y+ KMK +AD+L+ A
Sbjct: 9    LLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKEIADDLALA 68

Query: 255  GHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQYMLQSQEIRLEQLHLSLPT 434
            G  +S  +L+   L GL  +Y+ +VV L+ + + +T  E+Q  L + E RLEQ++ +   
Sbjct: 69   GSSVSTMDLVTQTLAGLDNEYNPIVVQLSDK-EHLTWVEMQAQLLTYENRLEQIN-NQSN 126

Query: 435  DTTLPTAHLATQLRNSLHLQGPSTNXXXXXXXXXXXXXXXXXXXXXXP----LCQLCNKP 602
             T  P+++++T L N    +G S                             +CQ+C KP
Sbjct: 127  LTLNPSSNISTILYNR---RGKSNAFGGGRGGQINRGARGGRGRGRATKDRIVCQVCCKP 183

Query: 603  GHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXAYYSTTTDTQSDNSW 782
            GH AS CY RF+ ++ GQ                             Y  +  T  D  W
Sbjct: 184  GHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNFNA----------YVASPSTVEDLDW 233

Query: 783  YLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNSHTQSTLILNN 962
            Y DSGA+NH+T D + +    E  G + L +GNG +L I   G SSL     Q +L L +
Sbjct: 234  YFDSGASNHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDSSL--DTQQKSLNLKD 291

Query: 963  LLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSEGLYRLQLHQT 1142
            +L VPKITKNLLSIS+LT DN ++VEF+   C VK++ + R LL G + +GLY+L    T
Sbjct: 292  ILYVPKITKNLLSISKLTFDNDIYVEFHDVACFVKDKLTGRILLEGKIKDGLYQLPGGST 351

Query: 1143 PTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKELL 1322
             T             +KRP  F               WH +LGHPN+ V+  ++     +
Sbjct: 352  ST-------------NKRPHVF---------FSIKETWHRKLGHPNSKVLNEVMKLCN-I 388

Query: 1323 STAP----SFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHF 1490
              +P     FC AC+ GK+ +  + +S +   +PL+++HSDVWGPAPI S  GF+YYV F
Sbjct: 389  EASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPAPISSVSGFKYYVLF 448

Query: 1491 VDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLG 1670
            +DD++ FTWIYPLK KS+V   F+ F+NLVE +F  +IKTLQ D GGE++SL+ +L   G
Sbjct: 449  LDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQCDGGGEFKSLSKVLIKTG 508

Query: 1671 IHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPT 1850
            I  R  CP+T  QNG++ERKHRH+VE GLTLL QA MPL YWWEAF+T+ FLIN L T  
Sbjct: 509  IQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEAFSTAVFLINRLPTQV 568

Query: 1851 LNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 2030
            + ++SP +               GCAC+P +K YNQHKL F +TKCVF+GYS +HKGYKC
Sbjct: 569  IKNKSPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTTKCVFLGYSGSHKGYKC 628

Query: 2031 LHPSGKIYIAQSVTFNECEFPFSSGF 2108
            L+ +G+I+I++ V FNE  FPF  GF
Sbjct: 629  LNSTGRIFISRHVVFNEHHFPFHDGF 654



 Score =  117 bits (294), Expect = 5e-23
 Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
 Frame = +3

Query: 2448 MLTRSKHGIFKPKT-YLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRN 2624
            M TRSK GI KPK  Y+ ++ K           P++  +A  +PEWK AM  E+ AL+ N
Sbjct: 739  MTTRSKMGIIKPKKPYVGAVEKTLEEQE-----PETTYEALENPEWKKAMIAEFKALMMN 793

Query: 2625 HTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVK 2804
             TW LVP Q   NI+D K VF+ KY +DG+++R KARLVAKGFQQ   +D+ ETFSPV+K
Sbjct: 794  KTWTLVPYQGQKNIIDCKWVFKTKYKADGTIERRKARLVAKGFQQTLGLDYDETFSPVIK 853

Query: 2805 PXXXXXXXXXXXXNNWDIQQI 2867
                          NW+I+Q+
Sbjct: 854  AITVRIILSIAVHFNWEIRQM 874


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  504 bits (1299), Expect = e-155
 Identities = 286/723 (39%), Positives = 400/723 (55%), Gaps = 30/723 (4%)
 Frame = +3

Query: 21   QAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNLS 200
            Q I+S LL SI++A+   +V C TS +VW TLE  F T  +A++ Q + QL + KKG+LS
Sbjct: 81   QLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGDLS 140

Query: 201  INDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQY 380
            I+DY+LK++++ D L+  GH IS  + I  I  GL QDY++ ++++ SR D  T++E++ 
Sbjct: 141  ISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEIEA 200

Query: 381  MLQSQEIRLEQLHLSLPTDTTLPTAHLATQLRNSL------------------------- 485
            +L +QE R+E+ ++ +   +T   AHL T  RN                           
Sbjct: 201  LLLAQESRIEK-NIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNGMQ 259

Query: 486  HLQGPSTNXXXXXXXXXXXXXXXXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHG-QXX 662
            H +G  T                       P CQLC + GH+  +CY RFD SF G    
Sbjct: 260  HFRGNFTQQGRGRHGRGSWKGNNK------PQCQLCGRIGHVVMQCYYRFDQSFTGPSQL 313

Query: 663  XXXXXXXXXXXXXXXXXXXXXXXXXAYYSTTTDTQSDNSWYLDSGATNHITADPSNLHHP 842
                                     +   TT +   DN+WY DSGAT+H+T + +NL   
Sbjct: 314  QGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTK 373

Query: 843  TEYKGINHLLIGNGQSLFISHYGSSSLYNSHTQS-TLILNNLLCVPKITKNLLSISQLTK 1019
            +++   + + +GNG+ L I H G +S  +S   S TL L  LL VP+ITKNLLS+S+   
Sbjct: 374  SQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLALKQLLHVPEITKNLLSVSKFAA 433

Query: 1020 DNPVFVEFYHDYCSVKEQTSKRELLRGVLSEGLYRLQLHQTPTTSPATSHHMLSCVSKRP 1199
            DN VF EF+   C VK+ +++  L+ G L  GLY         T      H  SC +   
Sbjct: 434  DNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFD-----NTQLKLPLHNSSCFASTA 488

Query: 1200 AHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKEL--LSTAPS-FCNACRIGKSK 1370
               +              WH RLGHP+++++  +L+   L  L+  PS  C+ C +GK  
Sbjct: 489  LPSKEPTVPASPTSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIH 548

Query: 1371 HKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVK 1550
               +  S +  TKPLE+IH+D+WGPA   S  G +YY+HF+D Y+ FTWIY LK KSE  
Sbjct: 549  KSSFLHSTSSYTKPLELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAF 608

Query: 1551 DIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERK 1730
             +FLHF++ VE +   KIK +QSDWGGEYRS    L + GI  R  CP+TH QNG +ERK
Sbjct: 609  QVFLHFKSQVELQLGHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERK 668

Query: 1731 HRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXX 1910
            HRHIVE G+ LL QAS+P +YW EAF TS +LIN L TP L ++SP+E            
Sbjct: 669  HRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXL 728

Query: 1911 XXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEF 2090
               GC C+P+++ +N HKL FRS  C F+GYS NHKGYKCL P+G I I++ V F+E  F
Sbjct: 729  KVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAF 788

Query: 2091 PFS 2099
            PF+
Sbjct: 789  PFA 791



 Score =  124 bits (310), Expect = 7e-25
 Identities = 66/140 (47%), Positives = 82/140 (58%)
 Frame = +3

Query: 2448 MLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNH 2627
            M+TRSK GIFKPK YL S             TP SV +A     WK AM DEY AL+RN+
Sbjct: 863  MITRSKXGIFKPKAYLIST------------TPTSVPEALQLSHWKQAMTDEYLALLRNN 910

Query: 2628 TWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKP 2807
            TWDLVP  +   ++  K VF++K N DG++ ++KARLVAKGF Q    DF ETFSPVVKP
Sbjct: 911  TWDLVPPPTDRKLIGCKWVFKVKENXDGTINKYKARLVAKGFHQIAGFDFNETFSPVVKP 970

Query: 2808 XXXXXXXXXXXXNNWDIQQI 2867
                          W ++Q+
Sbjct: 971  TTIRIVLTIALNLQWKVRQL 990


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  501 bits (1290), Expect = e-155
 Identities = 272/702 (38%), Positives = 395/702 (56%), Gaps = 5/702 (0%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQ +L W+LNS++  +   ++ C TS ++W   ++L   H++++I+ L+ +  S++KG +
Sbjct: 77   DQRLLGWMLNSMTTEIATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEM 136

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQ--E 371
             + DY++KMK+L D L  AG+ +S  +LI+  L GL  +Y+ VVV L+   DQ TL   +
Sbjct: 137  KMEDYLIKMKNLVDKLKLAGNPVSTSDLIIQTLNGLDSEYNPVVVKLS---DQTTLSWVD 193

Query: 372  VQYMLQSQEIRLEQLHLSLPTDTTLPTAHLATQLRNSLHLQGPSTNXXXXXXXXXXXXXX 551
            +Q  L + E R+EQL+ +L   T   TA++A    N    +G S+N              
Sbjct: 194  LQAQLLTFESRIEQLN-NLTNLTLNATANVA----NRSDHRGKSSNNNWRGSNSRGWRGG 248

Query: 552  XXXXXXXXPLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXX 731
                      CQ+C    HIA  C+ RFD ++                            
Sbjct: 249  RGRGKSGKNPCQVCGLSNHIAIDCFHRFDKTYSRSNHSAGHDKQGSHNA----------- 297

Query: 732  XXAYYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYG 911
                +  + ++  D  WY DSGA+NH+T         TE+ G N L++GNG+ L I   G
Sbjct: 298  ----FLASQNSVEDYDWYFDSGASNHVTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATG 353

Query: 912  SSSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKREL 1091
            SS L       +L L+++L VP ITKNLLS+S+L  DN + VEF  + C VK++ + + +
Sbjct: 354  SSKL------KSLNLHDILYVPNITKNLLSVSKLAADNNILVEFDENCCFVKDKLTGKVI 407

Query: 1092 LRGVLSEGLYRLQLHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLG 1271
            L+G+L +GLY+L           T  +  + VS + +                 WH RLG
Sbjct: 408  LKGLLKDGLYQLS---------GTKRNPSAFVSVKES-----------------WHRRLG 441

Query: 1272 HPNNNVMRHMLSNKELL---STAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWG 1442
            HPNN V+  +L + ++    S   SFC AC+ GK     + SS +   +PLE++H+DVWG
Sbjct: 442  HPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWG 501

Query: 1443 PAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSD 1622
            PAPI++  GF+YYVHFVDD++ FTWIYPLK KSE    F+ F+NL E +F  +IK +Q D
Sbjct: 502  PAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCD 561

Query: 1623 WGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWE 1802
             GGEY+ +  +    GI FR  CP+T  QNG++ERKHRHI E GLTLL QA MPL YWWE
Sbjct: 562  GGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWWE 621

Query: 1803 AFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRST 1982
            AF+T+ +LIN L +    ++SP                 GCAC+P +K YNQHKL + +T
Sbjct: 622  AFSTAVYLINRLPSQVTQNESPYSLMLQKEPDYKLLKTFGCACYPCLKPYNQHKLQYHTT 681

Query: 1983 KCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGF 2108
            +CVF+GYS +HKGYKCL+  G+I+I++ V FNE  FPF  GF
Sbjct: 682  RCVFLGYSNSHKGYKCLNSHGRIFISRHVIFNEDHFPFHDGF 723



 Score =  119 bits (299), Expect = 1e-23
 Identities = 65/138 (47%), Positives = 82/138 (59%)
 Frame = +3

Query: 2454 TRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTW 2633
            TRSK GI KPK     L    T     T+ P + ++A   P WK AM  E+ AL+ N TW
Sbjct: 819  TRSKSGIHKPKLPYIGL----TETYKDTMEPANAKEALSRPLWKEAMQKEFEALMSNKTW 874

Query: 2634 DLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKPXX 2813
             LVP Q+  NIVD+K VF+ KY  DGS++R KARLVAKGFQQ   ID+ ETFSPV+K   
Sbjct: 875  ILVPYQNQENIVDSKWVFKTKYKPDGSLERRKARLVAKGFQQTAGIDYEETFSPVIKAST 934

Query: 2814 XXXXXXXXXXNNWDIQQI 2867
                       NW+++Q+
Sbjct: 935  VRIILSIAVHLNWEVRQL 952


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  491 bits (1264), Expect = e-154
 Identities = 275/711 (38%), Positives = 390/711 (54%), Gaps = 6/711 (0%)
 Frame = +3

Query: 753  TTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 932
            ++ + S+N+WY DSGA+NH+T    N+H  T ++G + + +GNGQ L I+  G ++ ++ 
Sbjct: 4    SSSSSSNNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSP 63

Query: 933  -HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VL 1106
             + +    LNNLL VP ITKNL+S+SQ +KDN V+ EF+   C VK Q +   LL+G V 
Sbjct: 64   INPKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVG 123

Query: 1107 SEGLYRLQ-LHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNN 1283
            S+GLY+   L   P+T       +    S   A                 WH RLGHPN 
Sbjct: 124  SDGLYKFPALLPNPSTQSVQQQQLARIFSVNTA--------ATSPVSFATWHSRLGHPNV 175

Query: 1284 NVMRHMLSNK--ELLSTAPS-FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPI 1454
            +VM+H+  N   +L+S   S FC  C +GKS     + S T+   P ++++SD+WGPAP+
Sbjct: 176  DVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPV 235

Query: 1455 LSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGE 1634
             S  G++YYV FVD +T FTWIY LK K++  ++F  F  +V+ ++   IK LQ+DWGGE
Sbjct: 236  TSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGE 295

Query: 1635 YRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNT 1814
            YRS    L  +GI  R  CPHTH QNG +ERKHRHIVE+GLTL+ QA +P+Q+W  +F T
Sbjct: 296  YRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLT 355

Query: 1815 SAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVF 1994
            + +LIN L + ++ +  P                 GC+CFPH++ YN+HKL FRS +CVF
Sbjct: 356  AVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVF 415

Query: 1995 IGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHW 2174
            +GYS +HKGYKCL   G++YI++ V FNE +FP+   F +S  K S+S    S     + 
Sbjct: 416  LGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDLFSSS--KASDSQLPISVPLTINP 473

Query: 2175 LPFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXA 2354
             P  +H++++                  P   +  SP +LS                  +
Sbjct: 474  TPTPTHATRLTSPNPPTTSPSLISDSYSPNTAAHTSPSTLS-------IPTSSNLEPSSS 526

Query: 2355 PVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYT 2534
            P+I+                           M TR+K GI KP+   + LL        T
Sbjct: 527  PIIH---------------------PHNVHPMTTRAKDGIVKPRLQPTLLL--------T 557

Query: 2535 TITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGS 2714
             + P + +QA  +P W  AM  EYNAL+ N+TW LVP   H   +  K VFR+K N +GS
Sbjct: 558  QVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGS 617

Query: 2715 VQRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            VQ++KARLVAKGF QQ   D+ ETFSPV+KP            + W IQQ+
Sbjct: 618  VQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQL 668


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  494 bits (1273), Expect = e-151
 Identities = 292/787 (37%), Positives = 396/787 (50%), Gaps = 23/787 (2%)
 Frame = +3

Query: 576  PLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXAYYS-- 749
            P CQLC K GH+ ++CY RFD +F                              AYYS  
Sbjct: 308  PACQLCGKIGHVVAQCYYRFDHTFQ----------------VPQNLSSRNSSPRAYYSFS 351

Query: 750  -------TTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHY 908
                    T++  SD++WY DSGA+NH+T +P NL    E+ G N + +GNG  L I H 
Sbjct: 352  PQVNGVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHI 411

Query: 909  GSSSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRE 1088
            G S   +  +   L+LN+LL VP ITKNLLS+S+  KDN VF EF+ D C VK+Q ++  
Sbjct: 412  GQSEFLSPFSSKPLLLNHLLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAV 471

Query: 1089 LLRGVLSEGLYRLQ---LHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWH 1259
            L+ G + +GLY      L   PT S + S  +++      + F               WH
Sbjct: 472  LMVGKVRDGLYAFDSSHLALRPTQSLSKSPSVVA------SSFSSKVCTTSLSSTFDLWH 525

Query: 1260 MRLGHPNNNVMRHMLSN---KELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHS 1430
             RLGHP+   ++++LS      +     +FC++C +GK     +S S T  TKPLE+IH 
Sbjct: 526  KRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHL 585

Query: 1431 DVWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKT 1610
            D+WGP  +LS  G+RYY+HFVD ++ F+WI+ L+ KSE    F++F+  VE +F+ KIK+
Sbjct: 586  DLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKS 645

Query: 1611 LQSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQ 1790
            LQ+DWGGE+R+    L   GI  R  CPHT  QNG +ERKHR IVE GLTLL  AS+PL+
Sbjct: 646  LQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLK 705

Query: 1791 YWWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLD 1970
            +W E+F T  +L N L T  L+H+ PIE               GC+CFP+++ YN HKL 
Sbjct: 706  FWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQ 765

Query: 1971 FRSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQS 2150
            +RS +C F+GYS  HKGYKC+  +G++YI+  V F                 N  SF  S
Sbjct: 766  YRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIF-----------------NETSFPYS 808

Query: 2151 SNIQYSHWL-PFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXX 2327
              IQ S  L   +S S+                   P   +SS  P S            
Sbjct: 809  KTIQVSSCLLSTVSPSTSHLSPSASPPVLSPTMLPTPTSPISSARPISEMDNIVSTHPHA 868

Query: 2328 XXXXXXXXAP-------VINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPK 2486
                     P       V                             M+TR+K GI KPK
Sbjct: 869  PNSADTTLTPAQVVSNPVATPVQHVVSSIADASVTRTIAKDADNTHPMITRAKSGIVKPK 928

Query: 2487 TYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNI 2666
             +++++ +           P SV  A    EWK AM  EY+AL RN+TW LVP  +    
Sbjct: 929  IFIAAIRE-----------PSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQA 977

Query: 2667 VDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXN 2846
            +  K V++ K N DG+VQ++KARLVAKGF QQ   DF ETFSPVVKP             
Sbjct: 978  IGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSR 1037

Query: 2847 NWDIQQI 2867
            NW I+Q+
Sbjct: 1038 NWAIKQL 1044



 Score = 78.2 bits (191), Expect = 9e-11
 Identities = 41/118 (34%), Positives = 74/118 (62%)
 Frame = +3

Query: 114 LENLFTTHSKARILQLRFQLQSLKKGNLSINDYMLKMKSLADNLSSAGHLISDDELILYI 293
           LE  F + ++A+  Q + QLQ  KKG  +I++Y+ K+K   D+L+S G  +S  + +  I
Sbjct: 109 LEQYFASQTRAKAKQFKTQLQHTKKGGSTIDEYLAKIKVCVDSLASVGVSLSTKDHVESI 168

Query: 294 LGGLGQDYDSVVVNLTSRHDQITLQEVQYMLQSQEIRLEQLHLSLPTDTTLPTAHLAT 467
           L GL  DY+S V ++  R+D  +++E++ +L + E R+E+ + SL +    P+AH+A+
Sbjct: 169 LDGLPNDYESFVTSVILRNDDFSVEEIEALLMAHESRVEKNNNSLDSS---PSAHVAS 223


>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
          Length = 888

 Score =  478 bits (1231), Expect = e-151
 Identities = 284/718 (39%), Positives = 384/718 (53%), Gaps = 16/718 (2%)
 Frame = +3

Query: 762  TQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS--H 935
            T +  SWY DSGA+ H+T D  N+  PT + G  H+ +GNGQSL I   GSS ++N+  H
Sbjct: 202  TSNPPSWYPDSGASFHVTGDSRNIQEPTPFAGSEHIYMGNGQSLPIISSGSS-IFNAPNH 260

Query: 936  TQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VLSE 1112
            TQ+ LILNNLL VP ITKNL+S+SQ  KDN V+ EF+ +YC VK Q + + LL+G V ++
Sbjct: 261  TQTHLILNNLLHVPSITKNLISVSQFAKDNAVYFEFHPNYCLVKSQATNKVLLQGNVGTD 320

Query: 1113 GLYRLQLHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXX-----WHMRLGHP 1277
            GLY        + +PA S  +LS  S +P+ F                    WH+RLGHP
Sbjct: 321  GLYSFS---HISIAPAKSSSLLS--SFKPSVFNVHSSSTVSNSSLSFNSLYLWHLRLGHP 375

Query: 1278 NNNVMRHML--------SNKELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSD 1433
            N+  ++  L        +NK  +S   +FC AC +GK+   +  +S T  T+PLE++ SD
Sbjct: 376  NDQTLKSTLKQCNIPFINNKHDVS---NFCTACCMGKAHRLYAPASQTTYTQPLELVFSD 432

Query: 1434 VWGPAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTL 1613
            +WGP+P +S  GF YY+ F+D Y+ +TWIY LK KS+   IF  F+ + E +    +K L
Sbjct: 433  LWGPSPTVSSLGFHYYISFIDAYSRYTWIYLLKSKSDAFTIFKQFKTMAELQLGHSLKAL 492

Query: 1614 QSDWGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQY 1793
            Q+DWGGE+R     L   GI  R  CPHTH QNG  ERKHRH+V++GLTLL+QA++PL Y
Sbjct: 493  QTDWGGEFRPFTSYLANEGIIHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQANLPLTY 552

Query: 1794 WWEAFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDF 1973
            W  +F T+  LIN L T +LN + P                 G ACFP ++ YN HK DF
Sbjct: 553  WDHSFLTAVHLINRLPTASLNFKIPYTTLFHKDPDFNSFKVFGAACFPLLRPYNSHKFDF 612

Query: 1974 RSTKCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSS 2153
            RS +C+F+GYS  HKGYKCL P+G+IY+++ V FNE  FP+   F T     + S S   
Sbjct: 613  RSHECIFLGYSTTHKGYKCLSPTGRIYVSKDVIFNEQRFPYKILFPT----QTSSLSTPI 668

Query: 2154 NIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXX 2333
                   LP  +H +Q +              + P  NL   +PP   Q           
Sbjct: 669  QDVPLSTLPVGTH-NQTEITKVISQTSNPTSTDPPLLNLPQPAPPIAEQ----------- 716

Query: 2334 XXXXXXAPVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKN 2513
                  + +IN+                          M TR+K GI        SL K 
Sbjct: 717  -PPSISSKLINN------------------------HPMKTRAKSGI--------SLPKP 743

Query: 2514 PTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRI 2693
            P T   T   P +V+QA   P+W  AM  E+ AL  NHTW+LVP   +   +  K VFR 
Sbjct: 744  PPTLLLTHTEPRTVKQALQDPKWLSAMTTEFEALKNNHTWNLVPLPQNRTAIGCKWVFRT 803

Query: 2694 KYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            K N DG++ ++KARLVAKGF Q    DF ETFSPV+KP             NW ++Q+
Sbjct: 804  KENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIRLILSLAVSYNWPLKQL 861


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
            [Trifolium pratense]
          Length = 1242

 Score =  485 bits (1249), Expect = e-150
 Identities = 268/702 (38%), Positives = 393/702 (55%), Gaps = 5/702 (0%)
 Frame = +3

Query: 18   DQAILSWLLNSISEAMFGHVVRCTTSHEVWLTLENLFTTHSKARILQLRFQLQSLKKGNL 197
            DQA+L WL+NS++  +   V+ C TS ++W   ++L   H+++RI+ L+ +  +  K  +
Sbjct: 76   DQALLGWLMNSMTVDIATQVLHCETSKQLWDEAQSLAGAHTRSRIIYLKSEFHNTHKREM 135

Query: 198  SINDYMLKMKSLADNLSSAGHLISDDELILYILGGLGQDYDSVVVNLTSRHDQITLQEVQ 377
             +  Y+ KMK+LAD L  AG  IS  +L++  L GL  +Y+ VVV L+ + + I+  + Q
Sbjct: 136  KMEQYLAKMKNLADKLKLAGSPISSSDLMIQTLNGLDSEYNPVVVKLSDQTN-ISWVDFQ 194

Query: 378  YMLQSQEIRLEQLHLSLPTDTTLPTAHLATQLRNSLHLQGPSTNXXXXXXXXXXXXXXXX 557
              L + E RL+QL+ +        +A+ A++  +  +  G                    
Sbjct: 195  AQLLAFESRLDQLN-NFNNINLNASANFASKNESGGNKFGSRGGWRGSNSRGMRGGRGRA 253

Query: 558  XXXXXX-PLCQLCNKPGHIASKCYRRFDISFHGQXXXXXXXXXXXXXXXXXXXXXXXXXX 734
                   P+CQ+C K GH A++CY RFD S+  +                          
Sbjct: 254  RMSKPPRPICQICGKFGHTAAQCYYRFDKSYTEKNHYAEGEGSHS--------------- 298

Query: 735  XAYYSTTTDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGS 914
             A+ ++    Q D  WY DSGA+NH+T     L    E  G N LL+GNG+ L I   GS
Sbjct: 299  -AFVASPYHGQ-DYEWYFDSGASNHVTHQSGQLQDLNENNGKNSLLVGNGEKLKILASGS 356

Query: 915  SSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELL 1094
            + L + +      L N+L VP+ITKNLLS+S+LT DN   VEF  +YC VK++ + + LL
Sbjct: 357  TKLNDVN------LRNVLYVPEITKNLLSVSKLTIDNNALVEFDENYCYVKDKLTGKALL 410

Query: 1095 RGVLSEGLYRLQLHQTPTTSPATSHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLGH 1274
            +G L +GLY+L  ++ P T+            K P  +               WH +LGH
Sbjct: 411  KGRLKDGLYQLSANKEPPTN------------KDPCAY---------ISLKEIWHRKLGH 449

Query: 1275 PNNNVMRHMLSNKELLSTAPS----FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWG 1442
            PNN V+  +L +  +   +PS    FC AC+ GK     + +S +   +PL++IH+DVWG
Sbjct: 450  PNNKVLEKVLKDNNV-KISPSDKFTFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWG 508

Query: 1443 PAPILSKDGFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSD 1622
            PAPILS+  F+YYVHF+DD++ FTWI+PLK KSE    F  F+NLVE +F  KIK ++ D
Sbjct: 509  PAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCD 568

Query: 1623 WGGEYRSLAPILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWE 1802
             GGEY+ +       GI F+  CP+T  QNG++ERKHRH+ E+GLTLL QA MPL YWWE
Sbjct: 569  GGGEYKPVQKCAIDSGIQFQMSCPYTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWWE 628

Query: 1803 AFNTSAFLINHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRST 1982
            AF+T+ +LIN L +    ++SP                 GCAC+P +K YNQHKL F +T
Sbjct: 629  AFSTAVYLINRLPSSVNPNESPYTLVFKKEPDYTALKPFGCACYPCLKPYNQHKLQFHTT 688

Query: 1983 KCVFIGYSPNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGF 2108
            +CVF+GYS +HKGYKC++  G++++++ V FNE  FPF  GF
Sbjct: 689  RCVFLGYSNSHKGYKCVNSHGRVFVSRHVVFNENHFPFQEGF 730



 Score =  120 bits (301), Expect = 7e-24
 Identities = 61/140 (43%), Positives = 85/140 (60%)
 Frame = +3

Query: 2448 MLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNH 2627
            M TRSK G++KPK     L    T  A     P+SV +A   PEW +AMD EY AL+ N 
Sbjct: 840  MRTRSKAGVYKPKLPYIGL----TEEAKEGKEPESVSEALSIPEWLNAMDAEYKALMNNK 895

Query: 2628 TWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQRHKARLVAKGFQQQPRIDFFETFSPVVKP 2807
            TW LVP +   N++ +K +F+ KY +DG+++R KARLVA+GFQQ   +D+ ETFSPVVK 
Sbjct: 896  TWTLVPFEGQENVISSKWIFKTKYKADGTIERRKARLVARGFQQTAGVDYDETFSPVVKS 955

Query: 2808 XXXXXXXXXXXXNNWDIQQI 2867
                         +W+++Q+
Sbjct: 956  STVRIILSIAVHLSWEVRQL 975


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  472 bits (1215), Expect = e-149
 Identities = 284/709 (40%), Positives = 371/709 (52%), Gaps = 11/709 (1%)
 Frame = +3

Query: 774  NSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGS---SSLYNSHTQS 944
            N WY DSGA+NH+T    N+   T ++G + ++IGNGQ + I+  G    SS  N H   
Sbjct: 9    NIWYPDSGASNHVTNVSHNIQQYTPFEGPDQIVIGNGQGIPINSSGVTHFSSPLNPHI-- 66

Query: 945  TLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLS-EGLY 1121
            +L L+NLL VP ITKNL+S+SQ  KDN VF EF+  +C VK Q +   LL GVL  +GLY
Sbjct: 67   SLTLHNLLYVPTITKNLISVSQFCKDNSVFFEFHSTFCLVKSQANSETLLHGVLGPDGLY 126

Query: 1122 RLQLHQTPTTSPAT--SHHMLSCVSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMR 1295
                 Q P+  P    S H +S  S   A                 WH RLGHP+N+V++
Sbjct: 127  -----QFPSLLPPRQPSAHTVSSQSVSYA----------------TWHSRLGHPHNDVLK 165

Query: 1296 HML---SNKELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKD 1466
             +    +   +  +   FC +C +GKS       S TV   P E+I+SD+WGPAP+LS +
Sbjct: 166  SVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGPAPVLSDN 225

Query: 1467 GFRYYVHFVDDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSL 1646
            G++YYV FVD +T FTWI+ LK K+   D+F  F  +V  +F+  IK +Q+DWGGE+RS 
Sbjct: 226  GYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQTDWGGEFRSF 285

Query: 1647 APILQTLGIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFL 1826
               L   GIH R  CPHTH QNG  ERKHRHIVE+GLTLL QA +P+ +W  AF TS +L
Sbjct: 286  TSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHFWDYAFLTSVYL 345

Query: 1827 INHLSTPTLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYS 2006
            IN L + ++    P                 GC+CFPH++ YN+ KL FRS +CVF+GYS
Sbjct: 346  INRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFRSQECVFLGYS 405

Query: 2007 PNHKGYKCLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPF- 2183
             +HKGYKCL PSG+++I++ V F E  FP+ + F  S    S S      +  +   P  
Sbjct: 406  TSHKGYKCLAPSGRVFISKDVIFCENRFPYPTLFSPSTPSPSSSSITVPLVVTNPQAPIT 465

Query: 2184 -LSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPV 2360
              SH+S                    P   +S S P+                    AP 
Sbjct: 466  STSHTSPSSPIFTDSSPSQPSHTSPTPNPSASTSLPT-----------------HVEAPP 508

Query: 2361 INDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTI 2540
            IN                           M TR+K GI KP+   + LL        T  
Sbjct: 509  IN------------------------LHPMTTRAKAGIVKPRLQPTLLL--------THF 536

Query: 2541 TPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKRVFRIKYNSDGSVQ 2720
             P + +QA  S  W  AM  EYNAL+ N TW LVP  SH   +  K VFRIK N DG+V 
Sbjct: 537  EPKNTKQALASDTWLAAMKQEYNALMANGTWTLVPLPSHRTAIGCKWVFRIKENPDGTVH 596

Query: 2721 RHKARLVAKGFQQQPRIDFFETFSPVVKPXXXXXXXXXXXXNNWDIQQI 2867
            +HKARLVAKGF QQ   D+ ETFSPVVKP            ++W IQQ+
Sbjct: 597  KHKARLVAKGFHQQFGFDYTETFSPVVKPVTIRLILTLALTHHWSIQQL 645