BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038880
         (464 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX96363.1| ribonuclease H, partial [Trifolium pratense]           126   9e-38
dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subt...   140   2e-35
dbj|GAU21128.1| hypothetical protein TSUD_10450 [Trifolium subte...   122   5e-35
dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subt...   119   2e-34
dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subte...   134   2e-33
emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]   119   4e-33
dbj|GAU20068.1| hypothetical protein TSUD_381600 [Trifolium subt...   114   2e-32
gb|PNX85223.1| ribonuclease H [Trifolium pratense]                    120   2e-32
gb|PNY06371.1| ribonuclease H, partial [Trifolium pratense]           124   6e-32
gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]           105   7e-31
ref|XP_012087222.2| uncharacterized protein LOC105646064 [Jatrop...   101   9e-31
gb|KYP38132.1| Putative ribonuclease H protein At1g65750 family,...   117   2e-30
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   110   3e-30
gb|KYP73928.1| hypothetical protein KK1_006587, partial [Cajanus...   122   6e-30
gb|PNY14675.1| ribonuclease H [Trifolium pratense]                    102   8e-30
dbj|GAU25475.1| hypothetical protein TSUD_71290 [Trifolium subte...   100   8e-30
dbj|GAU18648.1| hypothetical protein TSUD_124810 [Trifolium subt...   102   1e-29
gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense]           101   1e-29
gb|PNX78963.1| ribonuclease H, partial [Trifolium pratense]           101   1e-29
gb|PNX80358.1| ribonuclease H, partial [Trifolium pratense]           102   1e-29

>gb|PNX96363.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1103

 Score =  126 bits (316), Expect(2) = 9e-38
 Identities = 52/83 (62%), Positives = 69/83 (83%)
 Frame = +2

Query: 215  QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
            + ++A+F YL+DRMWK+IQ WSGK +S+AG+E+L+K+ AQAIP +CMS  LLP +L EEL
Sbjct: 1010 RNKKAMFGYLKDRMWKKIQSWSGKHLSKAGREVLVKSVAQAIPAYCMSTILLPESLGEEL 1069

Query: 395  QRMLNSFWWGSKKNDERSINWMR 463
            +RM+NSFWWGS KN  R INW+R
Sbjct: 1070 ERMINSFWWGSNKNTGRGINWLR 1092



 Score = 58.5 bits (140), Expect(2) = 9e-38
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +3

Query: 63   EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
            +A+G AIN  KS +  S N   + K  I +ILGV + L TGRYLG+PS+IGRN +
Sbjct: 959  KASGQAINYAKSEVYFSRNTPNNMKESISDILGVKEVLGTGRYLGMPSMIGRNKK 1013


>dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subterraneum]
          Length = 1688

 Score =  140 bits (352), Expect = 2e-35
 Identities = 76/157 (48%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
 Frame = +2

Query: 2    FCKANERECNVLKEILKKFERGCRAGY*SYKIWNSTQ**CYNGS----EKSDF*YPWSLS 169
            FC+A ERE  +L E LKK+E    A   +  +  S      N S    EK       + S
Sbjct: 1065 FCRAEEREATILVEALKKYEE---ASGQAINMQKSEILFSKNTSGELKEKVQNILQVTES 1121

Query: 170  TS*HRAISWSAKFNWQKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVF 349
               ++ +   +    +K++AIFNY+RDR+WKRIQ WSGK +S+AG+E+LIK+ AQ+IP +
Sbjct: 1122 MGSNKYLGLPSMVG-RKKKAIFNYIRDRIWKRIQNWSGKHLSKAGREVLIKSVAQSIPTY 1180

Query: 350  CMSVFLLPVTLAEELQRMLNSFWWGSKKNDERSINWM 460
            CMSVFLLP TL EE+QRMLNSFWWGS +N+ R INW+
Sbjct: 1181 CMSVFLLPTTLGEEIQRMLNSFWWGSNRNNGRGINWL 1217


>dbj|GAU21128.1| hypothetical protein TSUD_10450 [Trifolium subterraneum]
          Length = 456

 Score =  122 bits (306), Expect(2) = 5e-35
 Identities = 51/83 (61%), Positives = 70/83 (84%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + +++IFNYL+DR+WK+   WS K++SRAGKE+LIK+ AQAIP +CM  FLLP +L+EE+
Sbjct: 157 RSKKSIFNYLKDRIWKKCHSWSAKSLSRAGKEVLIKSVAQAIPSYCMGAFLLPKSLSEEI 216

Query: 395 QRMLNSFWWGSKKNDERSINWMR 463
           +RMLNSF+WGSKK+  R INW+R
Sbjct: 217 ERMLNSFYWGSKKDGRRGINWLR 239



 Score = 53.1 bits (126), Expect(2) = 5e-35
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           +A+G AIN  K  I  S NV       + + LGV+QP+ +G+YLGLPS+IGR+ +
Sbjct: 106 QASGQAINYGKCAIAFSKNVNSHDVASLSSALGVTQPIGSGKYLGLPSMIGRSKK 160


>dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subterraneum]
          Length = 1229

 Score =  119 bits (299), Expect(2) = 2e-34
 Identities = 47/83 (56%), Positives = 71/83 (85%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + +++IF++++DR+WK+IQ W+ +++SRAGKE+LIKA AQA+P +CM  FLLP TL EE+
Sbjct: 633 RNKKSIFSFIKDRIWKKIQNWNSRSLSRAGKEVLIKAVAQAVPSYCMGAFLLPTTLGEEI 692

Query: 395 QRMLNSFWWGSKKNDERSINWMR 463
           +RM+NSF+WG+KK+  R INW+R
Sbjct: 693 ERMMNSFYWGTKKHGGRGINWLR 715



 Score = 53.9 bits (128), Expect(2) = 2e-34
 Identities = 30/75 (40%), Positives = 40/75 (53%)
 Frame = +3

Query: 3   FVKQMKENVTYXXXXXXXXXEAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNT 182
           F K     VT           A+G AIN  KS I  S N   + +  I N+LGV++ +  
Sbjct: 562 FCKANLSEVTTLKTILDTYEAASGQAINYQKSAIAYSRNTDANGQVAITNLLGVAELMGN 621

Query: 183 GRYLGLPSLIGRNNE 227
           G+YLGLPS+IGRN +
Sbjct: 622 GKYLGLPSMIGRNKK 636


>dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subterraneum]
          Length = 1601

 Score =  134 bits (337), Expect = 2e-33
 Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
 Frame = +2

Query: 2    FCKANERECNVLKEILKKFERGCRAGY*SYK---IWNSTQ**CYNGSEKSDF*YPWSLST 172
            FC+A+E ECN L++IL+++E          K    ++         + K  F     L +
Sbjct: 961  FCRADENECNKLRDILRQYEEISGQAINLQKSEIFFSKNTKETVKNTIKQIFQVEEGLGS 1020

Query: 173  S*HRAISWSAKFNWQKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFC 352
              +  +        +K++AIF YLRDR+WKRIQ WSGK +S+AG+E+LIK+ AQ+IP +C
Sbjct: 1021 GKYLGLP---SIVGRKKKAIFGYLRDRVWKRIQQWSGKHLSKAGREVLIKSVAQSIPTYC 1077

Query: 353  MSVFLLPVTLAEELQRMLNSFWWGSKKNDERSINWM 460
            MS FLLP TL EE+QRM+NSFWWG+ +   R INW+
Sbjct: 1078 MSTFLLPTTLGEEIQRMINSFWWGTNRRQGRGINWL 1113


>emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]
          Length = 517

 Score =  119 bits (297), Expect(2) = 4e-33
 Identities = 48/82 (58%), Positives = 66/82 (80%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + +R +F +LRDR+W+R+QGW  K +S+AGK+ILIK   QAIP +CMS FLLP++L+EEL
Sbjct: 160 KSKRVVFGFLRDRLWRRLQGWQSKLLSQAGKKILIKVVGQAIPSYCMSTFLLPISLSEEL 219

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           Q+M+NSFWWG K +  R INW+
Sbjct: 220 QKMMNSFWWGPKSDGGRRINWL 241



 Score = 50.4 bits (119), Expect(2) = 4e-33
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = +3

Query: 84  NLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRN 221
           +++ +GI  S N +   ++ I NILGVS PLNTGRYLGL SLIG++
Sbjct: 116 SVSVNGIFFSKNASSLDRDFISNILGVSTPLNTGRYLGLLSLIGKS 161


>dbj|GAU20068.1| hypothetical protein TSUD_381600 [Trifolium subterraneum]
          Length = 573

 Score =  114 bits (286), Expect(2) = 2e-32
 Identities = 47/81 (58%), Positives = 68/81 (83%)
 Frame = +2

Query: 221 QRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEELQR 400
           +++IF++++DR+WK+IQ W+ +++SRAGKE+LIKA AQAIP +CMS FL+  TL EE++R
Sbjct: 99  KKSIFSFIKDRIWKKIQNWNSRSLSRAGKEVLIKAVAQAIPSYCMSSFLILTTLGEEIER 158

Query: 401 MLNSFWWGSKKNDERSINWMR 463
           M+NSF+W  KKN  R INW+R
Sbjct: 159 MMNSFYWNMKKNGGRGINWLR 179



 Score = 52.4 bits (124), Expect(2) = 2e-32
 Identities = 30/75 (40%), Positives = 40/75 (53%)
 Frame = +3

Query: 3   FVKQMKENVTYXXXXXXXXXEAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNT 182
           F K     VT           A+G AIN  KS I  S N   + ++ I NILGV + +  
Sbjct: 26  FCKASVSEVTNLKHVLDTYEAASGQAINYQKSAIAYSRNTEANCRSFINNILGVVESMGH 85

Query: 183 GRYLGLPSLIGRNNE 227
           G+YLGLPS+IGR+ +
Sbjct: 86  GKYLGLPSMIGRDKK 100


>gb|PNX85223.1| ribonuclease H [Trifolium pratense]
          Length = 173

 Score =  120 bits (301), Expect(2) = 2e-32
 Identities = 48/84 (57%), Positives = 67/84 (79%)
 Frame = +2

Query: 212 WQKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEE 391
           W+ ++A+F Y +DRMWK+IQ WSGK +S+AG+E+L+K  AQ IP +CMS  LLP +L +E
Sbjct: 60  WRNKKALFGYFKDRMWKKIQNWSGKHLSKAGREVLVKFVAQEIPAYCMSSILLPESLGDE 119

Query: 392 LQRMLNSFWWGSKKNDERSINWMR 463
           L++M+NSFWWGS K+  R INW+R
Sbjct: 120 LEKMINSFWWGSNKSFGRGINWLR 143



 Score = 46.2 bits (108), Expect(2) = 2e-32
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           +A G AIN +KS +  S N   D K  +  IL V++ + TGRYL + S+I RN +
Sbjct: 10  KALGQAINYSKSEVYFSRNTPSDIKGNVSEILRVTEVMGTGRYLDMSSMIWRNKK 64


>gb|PNY06371.1| ribonuclease H, partial [Trifolium pratense]
          Length = 292

 Score =  124 bits (312), Expect = 6e-32
 Identities = 51/81 (62%), Positives = 72/81 (88%)
 Frame = +2

Query: 221 QRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEELQR 400
           +++IF++++DR+WK+IQ W+ +++SRAGKE+LIKA AQAIP +CMSVFLLP TL EE++R
Sbjct: 17  KKSIFSFIKDRIWKKIQSWNSRSLSRAGKEVLIKAVAQAIPSYCMSVFLLPTTLGEEIER 76

Query: 401 MLNSFWWGSKKNDERSINWMR 463
           M+NSF+WG+KKN  R INW+R
Sbjct: 77  MMNSFYWGTKKNGGRGINWLR 97


>gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1094

 Score =  105 bits (262), Expect(2) = 7e-31
 Identities = 45/82 (54%), Positives = 63/82 (76%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           +K+R +F Y++DR+WKRI  W G+A+SRAGKEI+IK+  QAIP + MSV+LLP T   E+
Sbjct: 526 RKKRDVFGYVKDRIWKRINSWRGRALSRAGKEIMIKSVLQAIPSYVMSVYLLPETTINEI 585

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           +RM+NSFWWG   N++  I W+
Sbjct: 586 ERMMNSFWWGGGANNQ-GIRWL 606



 Score = 56.2 bits (134), Expect(2) = 7e-31
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGR 218
           +A+G  INLTKS +  S N+++  +  +  I+GV   L TGRYLGLPS+IGR
Sbjct: 475 QASGQEINLTKSEVFFSRNLSISAQEDLSKIMGVRHVLGTGRYLGLPSMIGR 526


>ref|XP_012087222.2| uncharacterized protein LOC105646064 [Jatropha curcas]
          Length = 829

 Score =  101 bits (252), Expect(2) = 9e-31
 Identities = 40/82 (48%), Positives = 64/82 (78%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + +R +  +L++RMWK+I  WS + +S+AG+EIL+K+  QA+P +CMSVF LP++L  EL
Sbjct: 384 RNKRQVLGFLKERMWKQINSWSNRFLSKAGREILLKSVIQALPAYCMSVFELPLSLCTEL 443

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           ++M+NSFWWGS K  E+ ++W+
Sbjct: 444 EKMMNSFWWGS-KGSEKKLHWL 464



 Score = 59.7 bits (143), Expect(2) = 9e-31
 Identities = 31/57 (54%), Positives = 37/57 (64%)
 Frame = +3

Query: 66  AAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNEPFL 236
           A+G +IN  KSGI+ S+N +M  K  I +ILGV  P   G YLGLPSLIGRN    L
Sbjct: 334 ASGQSINFQKSGIMFSSNTSMTVKAVISHILGVFNPFEGGSYLGLPSLIGRNKRQVL 390


>gb|KYP38132.1| Putative ribonuclease H protein At1g65750 family, partial [Cajanus
           cajan]
          Length = 163

 Score =  117 bits (293), Expect = 2e-30
 Identities = 47/82 (57%), Positives = 66/82 (80%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           +K++A+FN ++DR+WKRIQ W GK +S+AG+E+LIK+ AQ+IP +CM VFL+P  L EE+
Sbjct: 55  RKKKALFNQIKDRIWKRIQSWKGKHLSKAGREVLIKSVAQSIPTYCMGVFLIPTYLGEEI 114

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           QRML SFWWGS K   + I+W+
Sbjct: 115 QRMLKSFWWGSNKKRNKGIHWL 136


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score =  110 bits (276), Expect(2) = 3e-30
 Identities = 46/82 (56%), Positives = 65/82 (79%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + +++IFNY++DR+W RI G S K +S+AGKE+LIK+ AQAIP +CMSVFLLP ++A+++
Sbjct: 351 RSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDI 410

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           ++MLNSFWWG K      I WM
Sbjct: 411 EKMLNSFWWGMKNEGRGGIRWM 432



 Score = 48.9 bits (115), Expect(2) = 3e-30
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +3

Query: 66  AAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           A+   IN+ KS I  S NV + +KN + N+L VS+ +   +YLGLPS+IGR+ +
Sbjct: 301 ASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKK 354


>gb|KYP73928.1| hypothetical protein KK1_006587, partial [Cajanus cajan]
          Length = 421

 Score =  122 bits (305), Expect = 6e-30
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 15/168 (8%)
 Frame = +2

Query: 2   FCKANERECNVLKEILKKFERGCRAGY*SYKIWNSTQ**CYNGSEKSDF*YPWSLSTS*H 181
           FCKA EREC  L+ IL+++E                        +KS+  Y  + +T   
Sbjct: 153 FCKATERECTTLRTILQQYESASGQAI---------------NLQKSEIYYSKNTTTRTR 197

Query: 182 RAIS---------WSAKFNW------QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEIL 316
            +I+          + K+        + ++A+F+Y++DR+WK+I  W+GK +S+AG+E L
Sbjct: 198 TSINAILGVHECIGTGKYLGLPSMVGRNKKAVFSYVKDRIWKKINHWTGKHLSKAGRETL 257

Query: 317 IKAAAQAIPVFCMSVFLLPVTLAEELQRMLNSFWWGSKKNDERSINWM 460
           IKA AQAIP +CMS FLLP +L +E+QRMLNSFWWGS  +  R I W+
Sbjct: 258 IKAVAQAIPSYCMSTFLLPTSLEDEIQRMLNSFWWGSNHHTGRGIKWL 305


>gb|PNY14675.1| ribonuclease H [Trifolium pratense]
          Length = 1293

 Score =  102 bits (254), Expect(2) = 8e-30
 Identities = 42/82 (51%), Positives = 64/82 (78%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           +K++ IF +++DR+WKRI  W G+A+SRAGKE++IK+  QAIP + MSV+LLP  + +++
Sbjct: 716 RKKKHIFAFIKDRIWKRINSWRGRALSRAGKEVMIKSVLQAIPAYVMSVYLLPDAIIKDI 775

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           +RM+NSFWWG   N+ + I WM
Sbjct: 776 ERMMNSFWWGGGTNN-KGIRWM 796



 Score = 55.8 bits (133), Expect(2) = 8e-30
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           EA+G  INLTKS +  S N+++  +  +  I+GV   L TG YLGLPS+IGR  +
Sbjct: 665 EASGQEINLTKSEVFFSRNLSIADQEDLSKIMGVKHVLGTGNYLGLPSMIGRKKK 719


>dbj|GAU25475.1| hypothetical protein TSUD_71290 [Trifolium subterraneum]
          Length = 510

 Score = 99.8 bits (247), Expect(2) = 8e-30
 Identities = 36/82 (43%), Positives = 64/82 (78%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           + ++A F +++DR+WK+I  WS + +S+AG+E++IK+  Q+IP + MS+FLLP +L+E++
Sbjct: 106 RSRKATFKFIKDRIWKKINSWSSRCLSQAGREVMIKSVLQSIPSYIMSIFLLPHSLSEDI 165

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           ++MLNSFWWG  +   + I+W+
Sbjct: 166 EKMLNSFWWGHNQEHSKGIHWL 187



 Score = 58.5 bits (140), Expect(2) = 8e-30
 Identities = 27/54 (50%), Positives = 39/54 (72%)
 Frame = +3

Query: 66  AAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           A+G +INL KS +  S NV+   KN I ++LGV Q + TG+YLGLPS++GR+ +
Sbjct: 56  ASGQSINLQKSEVYFSKNVSAPIKNSIASLLGVQQVMGTGKYLGLPSMVGRSRK 109


>dbj|GAU18648.1| hypothetical protein TSUD_124810 [Trifolium subterraneum]
          Length = 1742

 Score =  102 bits (255), Expect(2) = 1e-29
 Identities = 42/82 (51%), Positives = 64/82 (78%)
 Frame = +2

Query: 215  QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
            +K++ +F +++DR+WKRI  W G+A+SRAGKEI+IK+  QAIP + MSV+LLP T+  ++
Sbjct: 1212 RKKKDVFAFIKDRVWKRINSWRGRALSRAGKEIMIKSVLQAIPTYIMSVYLLPDTIIRDI 1271

Query: 395  QRMLNSFWWGSKKNDERSINWM 460
            +RM+NSFWWG   N+ + I W+
Sbjct: 1272 ERMMNSFWWGGGANN-KGIKWL 1292



 Score = 55.1 bits (131), Expect(2) = 1e-29
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 63   EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
            EA+G  INL+KS +  S N++   +  + NI+GV   L TG YLGLPS+IGR  +
Sbjct: 1161 EASGQEINLSKSEVFFSRNLSRAAQEDLSNIMGVRHVLGTGNYLGLPSMIGRKKK 1215


>gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense]
          Length = 997

 Score =  101 bits (251), Expect(2) = 1e-29
 Identities = 41/82 (50%), Positives = 63/82 (76%)
 Frame = +2

Query: 215  QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
            +K+R +F +++DR+WKRI  W G+A+SRAGKE++IK+  QAIP + MS++LLP     E+
Sbjct: 759  RKKRDVFAFIKDRLWKRINSWRGRALSRAGKEVMIKSVLQAIPSYVMSIYLLPDATINEI 818

Query: 395  QRMLNSFWWGSKKNDERSINWM 460
            +RMLNSFWWG + +++  I W+
Sbjct: 819  ERMLNSFWWGGRASNQ-GIRWL 839



 Score = 56.6 bits (135), Expect(2) = 1e-29
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGR 218
           EAAG  INL+KS +  S N+++  +  +  I+GV Q L TG YLGLPS+IGR
Sbjct: 708 EAAGQEINLSKSEVFFSRNLSLAAQEDLSRIMGVRQVLGTGNYLGLPSMIGR 759


>gb|PNX78963.1| ribonuclease H, partial [Trifolium pratense]
          Length = 757

 Score =  101 bits (251), Expect(2) = 1e-29
 Identities = 40/82 (48%), Positives = 64/82 (78%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           +K++ IF+Y++DR+WKRI  W G+A+S+AGKE++IK+  QAIP + MS++LLP +  +E+
Sbjct: 317 RKKKVIFSYIKDRIWKRINSWRGRALSKAGKEVMIKSVLQAIPSYVMSIYLLPESTIQEI 376

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           +RM+NSFWWG    + + I W+
Sbjct: 377 ERMINSFWWGGGAKN-KGIKWL 397



 Score = 56.6 bits (135), Expect(2) = 1e-29
 Identities = 27/55 (49%), Positives = 35/55 (63%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           EAAG  INLTKS +  S N++   +  +  I+GV   L TG YLGLPS+IGR  +
Sbjct: 266 EAAGQEINLTKSEVFFSRNISFAAQEDLSRIMGVRHVLGTGNYLGLPSMIGRKKK 320


>gb|PNX80358.1| ribonuclease H, partial [Trifolium pratense]
          Length = 700

 Score =  102 bits (254), Expect(2) = 1e-29
 Identities = 42/82 (51%), Positives = 64/82 (78%)
 Frame = +2

Query: 215 QKQRAIFNYLRDRMWKRIQGWSGKAISRAGKEILIKAAAQAIPVFCMSVFLLPVTLAEEL 394
           +K++ +F YL+DR+WKRI  W G+A+S+AGKE++IK+  QAIP + MSV+LLP +  +++
Sbjct: 608 RKKKEVFAYLKDRIWKRINSWRGRALSKAGKEVMIKSVLQAIPSYVMSVYLLPESTVKDI 667

Query: 395 QRMLNSFWWGSKKNDERSINWM 460
           +RMLNSFWWG   N+ + I W+
Sbjct: 668 ERMLNSFWWGGGANN-KGIRWL 688



 Score = 55.1 bits (131), Expect(2) = 1e-29
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 63  EAAGLAINLTKSGILLSNNVTMDQKNQIFNILGVSQPLNTGRYLGLPSLIGRNNE 227
           EA+G  INLTKS +  S N+++  +  +  I+GV   L TG YLGLPS+IGR  +
Sbjct: 557 EASGQEINLTKSEVFFSRNLSIAAQEDLSRIMGVRHVLGTGNYLGLPSMIGRKKK 611