BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038810
         (2201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]           613   0.0  
gb|PNX98065.1| ribonuclease H [Trifolium pratense]                    613   0.0  
gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]           613   0.0  
gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]           613   0.0  
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           596   0.0  
ref|XP_024172006.1| uncharacterized protein LOC112178017 [Rosa c...   601   0.0  
gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]           608   0.0  
gb|PRQ55763.1| putative RNA-directed DNA polymerase [Rosa chinen...   605   0.0  
gb|PNY15111.1| ribonuclease H [Trifolium pratense]                    607   0.0  
gb|PNY14301.1| ribonuclease H [Trifolium pratense]                    600   0.0  
gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]           581   0.0  
ref|XP_023905045.1| uncharacterized protein LOC112016795 [Quercu...   602   0.0  
gb|PNX71213.1| ribonuclease H [Trifolium pratense]                    589   0.0  
ref|XP_024156142.1| uncharacterized protein LOC112164137 [Rosa c...   598   0.0  
gb|PNY03092.1| ribonuclease H [Trifolium pratense]                    585   0.0  
gb|PNX72264.1| ribonuclease H [Trifolium pratense]                    581   0.0  
gb|PNY07715.1| ribonuclease H [Trifolium pratense]                    598   0.0  
ref|XP_023881891.1| uncharacterized protein LOC111994244 [Quercu...   588   0.0  
gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]           583   0.0  
ref|XP_024172304.1| uncharacterized protein LOC112178381 [Rosa c...   597   0.0  

>gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]
          Length = 916

 Score =  613 bits (1580), Expect = 0.0
 Identities = 313/734 (42%), Positives = 438/734 (59%), Gaps = 7/734 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN ++A EIFH + ++K  + G   +K DM+KAYDRVEWDFL   +  
Sbjct: 180  NQSAFIKGRLITDNTIIASEIFHYLAHSKR-KNGYVGIKTDMAKAYDRVEWDFLEATLTS 238

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP  +VS +M CV TV +SIL NG P   F P RGLRQGDPLSPYLF+ CA+  S LI
Sbjct: 239  MGFPKSMVSTIMNCVRTVKFSILINGHPSQEFYPQRGLRQGDPLSPYLFIICADVLSGLI 298

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             K++    +HG+ IC  AP ISHLFFADDS++F RAN  E+  I+ II  Y  ASGQ+VN
Sbjct: 299  TKAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVN 358

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
            F KSE+ FS GV N     ++  + ++++ +   YLG+P ++GRSKK IF  + +++ KK
Sbjct: 359  FSKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK 418

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  LIK+VAQ+IPTY+MS F +P+  C Q++ +I NFWWG   D +K
Sbjct: 419  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRK 478

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHWI+W  +CK K+ GG+GFRD+ AFN+A+LAKQGWRL+   D+L+A+ LKA+YYP G+F
Sbjct: 479  IHWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEF 538

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            L AS     S+TW+SI+    +I++GS W +G+G  I +W D W+  + N     S+   
Sbjct: 539  LKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNN 598

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
               +KV EL+     +WN T++ QIFN  +   I  IP+ +    DIL W  T  G YSV
Sbjct: 599  CGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSV 658

Query: 1443 KSGYQLALS-LKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
            KSGYQ  +   KN      +SS     +WK +WKLN+P K   F+W+     +PV+  L 
Sbjct: 659  KSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLF 718

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMS 1799
            +K    DPLC RC + +ET++H   +C W+   W ASP+ L NL +       D    M 
Sbjct: 719  KKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTL-NLNSNQLTEFYDWFNYMI 777

Query: 1800 KIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLAR------NK 1961
               +K+       + + +W  RN+LVFQ+K++P QE    A+K LH+F+          K
Sbjct: 778  INTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK 837

Query: 1962 QPHPQIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKY 2141
              H   R+    W  P  G +K N DA +        G +LR  +G  +   +R      
Sbjct: 838  PSHKSCRNNTS-WSPPLRGCLKANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGSG 896

Query: 2142 SVDVAEAIACREGL 2183
               + EA+A  + +
Sbjct: 897  EAVLGEALALNDAM 910


>gb|PNX98065.1| ribonuclease H [Trifolium pratense]
          Length = 1011

 Score =  613 bits (1580), Expect = 0.0
 Identities = 313/734 (42%), Positives = 438/734 (59%), Gaps = 7/734 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN ++A EIFH + ++K  + G   +K DM+KAYDRVEWDFL   +  
Sbjct: 180  NQSAFIKGRLITDNTIIASEIFHYLAHSKR-KNGYVGIKTDMAKAYDRVEWDFLEATLTS 238

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP  +VS +M CV TV +SIL NG P   F P RGLRQGDPLSPYLF+ CA+  S LI
Sbjct: 239  MGFPKSMVSTIMNCVRTVKFSILINGHPSQEFYPQRGLRQGDPLSPYLFIICADVLSGLI 298

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             K++    +HG+ IC  AP ISHLFFADDS++F RAN  E+  I+ II  Y  ASGQ+VN
Sbjct: 299  TKAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVN 358

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
            F KSE+ FS GV N     ++  + ++++ +   YLG+P ++GRSKK IF  + +++ KK
Sbjct: 359  FSKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK 418

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  LIK+VAQ+IPTY+MS F +P+  C Q++ +I NFWWG   D +K
Sbjct: 419  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRK 478

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHWI+W  +CK K+ GG+GFRD+ AFN+A+LAKQGWRL+   D+L+A+ LKA+YYP G+F
Sbjct: 479  IHWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEF 538

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            L AS     S+TW+SI+    +I++GS W +G+G  I +W D W+  + N     S+   
Sbjct: 539  LKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNN 598

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
               +KV EL+     +WN T++ QIFN  +   I  IP+ +    DIL W  T  G YSV
Sbjct: 599  CGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSV 658

Query: 1443 KSGYQLALS-LKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
            KSGYQ  +   KN      +SS     +WK +WKLN+P K   F+W+     +PV+  L 
Sbjct: 659  KSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLF 718

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMS 1799
            +K    DPLC RC + +ET++H   +C W+   W ASP+ L NL +       D    M 
Sbjct: 719  KKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTL-NLNSNQLTEFYDWFNYMI 777

Query: 1800 KIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLAR------NK 1961
               +K+       + + +W  RN+LVFQ+K++P QE    A+K LH+F+          K
Sbjct: 778  INTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK 837

Query: 1962 QPHPQIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKY 2141
              H   R+    W  P  G +K N DA +        G +LR  +G  +   +R      
Sbjct: 838  PSHKSCRNNTS-WSPPLRGCLKANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGSG 896

Query: 2142 SVDVAEAIACREGL 2183
               + EA+A  + +
Sbjct: 897  EAVLGEALALNDAM 910


>gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1070

 Score =  613 bits (1580), Expect = 0.0
 Identities = 313/734 (42%), Positives = 438/734 (59%), Gaps = 7/734 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN ++A EIFH + ++K  + G   +K DM+KAYDRVEWDFL   +  
Sbjct: 334  NQSAFIKGRLITDNTIIASEIFHYLAHSKR-KNGYVGIKTDMAKAYDRVEWDFLEATLTS 392

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP  +VS +M CV TV +SIL NG P   F P RGLRQGDPLSPYLF+ CA+  S LI
Sbjct: 393  MGFPKSMVSTIMNCVRTVKFSILINGHPSQEFYPQRGLRQGDPLSPYLFIICADVLSGLI 452

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             K++    +HG+ IC  AP ISHLFFADDS++F RAN  E+  I+ II  Y  ASGQ+VN
Sbjct: 453  TKAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVN 512

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
            F KSE+ FS GV N     ++  + ++++ +   YLG+P ++GRSKK IF  + +++ KK
Sbjct: 513  FSKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK 572

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  LIK+VAQ+IPTY+MS F +P+  C Q++ +I NFWWG   D +K
Sbjct: 573  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRK 632

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHWI+W  +CK K+ GG+GFRD+ AFN+A+LAKQGWRL+   D+L+A+ LKA+YYP G+F
Sbjct: 633  IHWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEF 692

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            L AS     S+TW+SI+    +I++GS W +G+G  I +W D W+  + N     S+   
Sbjct: 693  LKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNN 752

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
               +KV EL+     +WN T++ QIFN  +   I  IP+ +    DIL W  T  G YSV
Sbjct: 753  CGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSV 812

Query: 1443 KSGYQLALS-LKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
            KSGYQ  +   KN      +SS     +WK +WKLN+P K   F+W+     +PV+  L 
Sbjct: 813  KSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLF 872

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMS 1799
            +K    DPLC RC + +ET++H   +C W+   W ASP+ L NL +       D    M 
Sbjct: 873  KKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTL-NLNSNQLTEFYDWFNYMI 931

Query: 1800 KIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLAR------NK 1961
               +K+       + + +W  RN+LVFQ+K++P QE    A+K LH+F+          K
Sbjct: 932  INTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK 991

Query: 1962 QPHPQIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKY 2141
              H   R+    W  P  G +K N DA +        G +LR  +G  +   +R      
Sbjct: 992  PSHKSCRNNTS-WSPPLRGCLKANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGSG 1050

Query: 2142 SVDVAEAIACREGL 2183
               + EA+A  + +
Sbjct: 1051 EAVLGEALALNDAM 1064


>gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1188

 Score =  613 bits (1580), Expect = 0.0
 Identities = 317/736 (43%), Positives = 446/736 (60%), Gaps = 9/736 (1%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN L+A EIFH +   K  + G   +K DM+KAYDRVEWDFL   M+ 
Sbjct: 359  NQSAFIQGRLITDNTLIASEIFHYLAQTKR-KTGYVGIKTDMAKAYDRVEWDFLEATMVT 417

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP+ +V  +M+CV+TV +SIL NG P   F P RGLRQGDPLSPYLF+ CA+  S LI
Sbjct: 418  MGFPATMVQTIMKCVTTVKFSILINGYPSQEFYPQRGLRQGDPLSPYLFIICADVLSGLI 477

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             +++ +  +HGI+I + AP ISHLFFADDS++F RA N E+  I+ II TY  ASGQ+VN
Sbjct: 478  SRAQQEKLIHGIRISQGAPEISHLFFADDSLMFCRATNKEVSTIQDIIQTYQKASGQLVN 537

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
              KSE+ FS GV N   + ++R + +Q+      YLG+P   GRSK+ IF  + +++ KK
Sbjct: 538  LTKSEMVFSKGVTNGIKEEISRILPMQISEYFSKYLGMPIVHGRSKQQIFNYIREKIWKK 597

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  LIK+VAQ+IPTY+MSCF IP+  C Q++ +I NFWWG   D++K
Sbjct: 598  LKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSCFLIPKGVCEQLEKMICNFWWGSTTDQRK 657

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            +HW++W K+C  K NGGLGFRD+ AFN+A+LAKQGWRL+    +L+A+ LKA+Y+PN  F
Sbjct: 658  MHWLKWSKVCNQKRNGGLGFRDLRAFNEALLAKQGWRLITKPTSLVAQVLKAKYFPNESF 717

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQ---NFRPETSR 1253
            L A      S+TWRSI+    +I++GS W +G+G  I +W D W+  +      RP+ + 
Sbjct: 718  LNAKHKQVMSYTWRSIMQASWVIKRGSYWSIGDGEDINIWEDNWMQQKSATYKGRPKPNN 777

Query: 1254 GEWPLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQ 1433
                  +KV EL+     EWN  ++ Q+F   +   I++IP+ +    D+L W  T  GQ
Sbjct: 778  LNL---IKVKELMDSNYNEWNTDIINQVFLPYEAQMILNIPIIDKTQPDMLTWDCTQDGQ 834

Query: 1434 YSVKSGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRAS 1613
            YSVKSGY   +   N     PS+++ H  +W  +WKL +P K    LW+V H  LPV+ +
Sbjct: 835  YSVKSGYHAIMEWGNLPNASPSNNSQH--IWNVLWKLKVPPKHSHLLWRVLHNALPVKNN 892

Query: 1614 LSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLE 1793
            L ++    DPLC RC +++ET+ H   DC W+   W AS + L NL         D +  
Sbjct: 893  LFKRGVRCDPLCPRCSNSMETIHHVFLDCEWAKQTWFASALTL-NLGQNQLTDFYDWINY 951

Query: 1794 MSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQ--P 1967
            M    NK+       +++ +WYARN+LVFQ KN+P QE    A+  L ++Q    +Q   
Sbjct: 952  MINNTNKECIEKITAIMYGIWYARNVLVFQGKNLPPQEISSTALNQLQEYQTHGLEQHIQ 1011

Query: 1968 HPQI-RDLCP---FWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQ 2135
             PQ+ R+ C     W  PP G +K+N DA +        G +LR  +G  + V +R    
Sbjct: 1012 DPQVRRNGCSNDISWSPPPRGTLKINVDAHLSSDGHWSTGLVLRRSDGSTVGVATRTHNG 1071

Query: 2136 KYSVDVAEAIACREGL 2183
               V   EA+   + +
Sbjct: 1072 SADVVTGEAMGLMDAI 1087


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  596 bits (1537), Expect = 0.0
 Identities = 303/725 (41%), Positives = 427/725 (58%), Gaps = 2/725 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFV GRLITDNAL+A E FH MK     ++G  ALKLDM+KAYDR+EW F+   +   
Sbjct: 133  QSAFVKGRLITDNALIAMECFHWMKKKTKGKKGMMALKLDMAKAYDRMEWPFIRSTLQAT 192

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GFP  +++L+M C+STVSY +L NG P   F P RG+RQGDPLSPY+F+ CA   S ++ 
Sbjct: 193  GFPPTMINLIMNCISTVSYQLLVNGQPSRSFKPERGIRQGDPLSPYVFILCANVLSGMLH 252

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K      +HG+++ R AP I+HL FADDS++F RAN  E E I  I+ TY  ASGQ+V+ 
Sbjct: 253  KGARNNKIHGLQVARNAPKITHLLFADDSLLFARANQKEAEVIINILQTYQTASGQLVSL 312

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            +KSE+SFS  +P    + +   + V+ V  H  YLGLP   GRSKK IF ++ +R+ KK+
Sbjct: 313  EKSEVSFSRNLPTIEKNMICNKIDVKAVTNHSKYLGLPVIFGRSKKEIFASVQERIWKKI 372

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK  LIKSVAQ+IP YIMSC+++P   C  I++++A FWWG    ++KI
Sbjct: 373  KGWKEKCLSRAGKETLIKSVAQAIPNYIMSCYKLPTGCCDNIEAMLAKFWWGTTEKQRKI 432

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W KL K K  GGLGFR    FNKA+L KQ WRLL + D+LLA+  K+RY+P   F+
Sbjct: 433  HWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFKSRYFPRSKFM 492

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A++GY PS+ WRS+   RE+I  G+RWL+GNG  + +W D WL  +  F+  +      
Sbjct: 493  DANVGYQPSYAWRSLCNSREVIDVGARWLIGNGKDVHIWNDKWLPAQDKFKVWSPVSNLA 552

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             +  VS+L+    + W+  LV   FN  + ++I++IPL   L  D L WH+  +G++SV+
Sbjct: 553  PNAMVSDLINLETKMWDKNLVQNCFNSFEAEQILNIPLSWRLPADKLIWHWEKNGEFSVR 612

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S Y +   ++N+     SSS DH  LWK IWK+ +P  ++ FLW++A  ILP R+ L +K
Sbjct: 613  SAYHMLSEIRNQNSPEASSSRDH-LLWKAIWKVKVPNCIKNFLWRLAKAILPTRSRLEKK 671

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSKI 1805
                D  C  C + IE  EH    C  S   W +SP+ L+   A  +  +   +      
Sbjct: 672  GITLDTTCPLCFNDIECNEHLFMHCPLSKQVWFSSPLGLH---APNNVGLISWMQLWLSN 728

Query: 1806 ENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKS--LHDFQLARNKQPHPQI 1979
             +K     F+  LW +W  RN L+F  KN+     ++ A  S  + +F           +
Sbjct: 729  PDKLASQLFSTTLWMIWKGRNKLIF--KNVKFCPIYVAAASSDFVAEFNSGSCCNESNIV 786

Query: 1980 RDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVDVAE 2159
            R+    W+ P +   KVN DA       TG G ++R+H G +    +     K S  +AE
Sbjct: 787  RENPDSWEPPEQAKFKVNIDAGCFSNGTTGWGMIMRNHLGMVDFAATHLEKIKVSPTLAE 846

Query: 2160 AIACR 2174
            A+A R
Sbjct: 847  AMALR 851


>ref|XP_024172006.1| uncharacterized protein LOC112178017 [Rosa chinensis]
          Length = 1045

 Score =  601 bits (1549), Expect = 0.0
 Identities = 320/733 (43%), Positives = 443/733 (60%), Gaps = 4/733 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFVPGRLI+DN+LLAFEI H +K  +    G  ALKLDMSKAYDRVEWDFL  V+ K 
Sbjct: 153  QSAFVPGRLISDNSLLAFEISHCLKRRRRGNVGFCALKLDMSKAYDRVEWDFLEAVLDKL 212

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GF +  +   M CVSTVSYS L NG P    +P+RGLRQGD +SPYLFL CAE  S +I+
Sbjct: 213  GFGATWIRWTMACVSTVSYSFLVNGDPCGNISPSRGLRQGDAISPYLFLLCAEVLSRMIK 272

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            ++E    +HG+K+C++AP ISHLFFADDS IF +A   +I  ++ I   Y   SGQ +N+
Sbjct: 273  EAERNDLMHGVKVCQQAPAISHLFFADDSFIFSKAEITDILCMRDIFQKYEHMSGQQINY 332

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            +KS ISFS  VP    D LAR +GV  V KH  YLGLP  +  SK   F  L+DRV  + 
Sbjct: 333  EKSCISFSKNVPRWKQDDLARVLGVTRVDKHDKYLGLPTELSYSKDEAFWYLVDRVRTRT 392

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            + W++  LSTAGK +LIK+V QSIPTY+MSCF++P+  C ++  L+A FWWG+  +E+KI
Sbjct: 393  QGWRNKTLSTAGKEVLIKAVVQSIPTYVMSCFELPKHLCDEMHRLMARFWWGEFGEERKI 452

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W KLC PK  GGLGFRD+  FN A+LAKQGWRL+   D+LLA+  KARY+PN DF+
Sbjct: 453  HWVAWDKLCAPKKEGGLGFRDMHLFNTALLAKQGWRLICRLDSLLAQVFKARYFPNTDFM 512

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A +    SF+WRSI+ GR++++KG R+ VGNG  I +W DPW+     F+P +   +  
Sbjct: 513  HAVLHKGASFSWRSIMKGRDLLKKGLRFQVGNGEDISIWNDPWVPLPYRFKPFSIPMQGA 572

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             D++V +L+     +W + L+ ++F   +V  I+ IPL      D L WH+   G+YSVK
Sbjct: 573  EDLRVVDLIDEETGDWQEWLLHELFTPMEVVNIMKIPLSLSGGIDRLVWHFDKKGRYSVK 632

Query: 1446 SGYQLALSLKNELQQLPSSST---DHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASL 1616
            +GY +A  + + L++  S S+   D   LW  +WK+N+P KV++  W++  G LP RA+L
Sbjct: 633  NGYHVA-RVMDTLERTASGSSFGADRARLWGKLWKVNVPPKVRMHAWRLVKGTLPTRAAL 691

Query: 1617 SRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEM 1796
            +++  +SD  C  C + +E   H  ++C     FW  S + L       S  +     +M
Sbjct: 692  AKRVQLSDVRCVYCSNGVEDSLHLFKNCDALRTFWMHSSLELQP-GKHPSIVLDVWFWDM 750

Query: 1797 SKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHPQ 1976
                N +    F M LW +W  RN +V++            A   LH+++    +Q    
Sbjct: 751  VDALNGEKLEYFLMALWVVWMERNNIVWKASVSNPTNMHAWAKSFLHEYKQLHKRQGGKA 810

Query: 1977 IRDLCPFWQRPPEGIIKVNSDAS-VLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVDV 2153
             R L   W  PP G +K+N D S    T G G+G ++R+ EG  I   +R F    S   
Sbjct: 811  KRSLIK-WTCPPRGRLKINIDGSFCTETGGGGVGVVVRNFEGTCIATFARPFHFAQSDIH 869

Query: 2154 AEAIACREGLILA 2192
             EA A R GL++A
Sbjct: 870  MEAEALRAGLLIA 882


>gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1348

 Score =  608 bits (1569), Expect = 0.0
 Identities = 315/730 (43%), Positives = 438/730 (60%), Gaps = 4/730 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QS FV GRLITDN L+A E FH +K  +  ++G  A+KLDMSKAYDR+EW F+  V++K 
Sbjct: 626  QSGFVQGRLITDNGLIAMECFHWLKKKRKGKKGMMAVKLDMSKAYDRIEWAFVQTVLVKM 685

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GFP +IVS++M+C+STVSY IL NG P   FTP RGLRQGDP+SPYLF+ CA   S L+ 
Sbjct: 686  GFPDNIVSVIMKCISTVSYQILINGQPSISFTPDRGLRQGDPISPYLFILCANVLSGLLH 745

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K      +HGIK+ RRAP ISHL FADDS++F RAN HE   I   +  Y  ASGQVVN 
Sbjct: 746  KEVQSKRIHGIKVARRAPQISHLQFADDSLLFARANQHEANVILSTLAAYQRASGQVVNM 805

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKSE SFS  V  + +  +   MG + VA  + YLGLP   GRSKK IF  + DRV KKL
Sbjct: 806  DKSEASFSRNVLEADSQFICNMMGAKTVASQNRYLGLPVIFGRSKKVIFSFVKDRVWKKL 865

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK +LIK+VAQ+IP Y+MSCF+IP D C +I+S++ANFWWG K   +K+
Sbjct: 866  KGWKEKSLSRAGKEVLIKAVAQAIPNYVMSCFKIPNDCCKEIESMLANFWWGSKEGGQKM 925

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W ++   K+ GG+GFR  S FNKA+L KQ WRL+ +E++LL R  K+RYYPN  F+
Sbjct: 926  HWMSWDRMSSSKMKGGMGFRGFSNFNKALLGKQCWRLISEEESLLGRIFKSRYYPNHSFI 985

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             AS G+ PS+ WRSI++ RE +QKGSRW+VGNG ++++W+D WL T  NF+  +      
Sbjct: 986  EASSGFQPSYAWRSILSAREHVQKGSRWIVGNGRKVRIWKDNWLPTLSNFKVCSPISFLD 1045

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             +  VS L+    ++W+  LV  IFN  +   I S+PL     +D L W    +G YSVK
Sbjct: 1046 GEATVSALIDEDLRKWDLNLVNSIFNNFEAGIISSMPLSFSQHEDKLVWTGEKNGGYSVK 1105

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S Y L L  ++E++   SSS+   + WK +W + +P +++ F+W++A  ILP R +L R+
Sbjct: 1106 SAYHL-LCNESEVRHPESSSSAAGSFWKHLWAIPLPNRIKNFMWRLAKNILPTRGNLLRR 1164

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSKI 1805
            +   DP+C  C + +E+ EH    C      W ASP      +       +D++L +++ 
Sbjct: 1165 RVPLDPVCPLCFNDLESTEHLFLHCPLIKQVWLASP------LGVRPPPHSDLVLWLTQW 1218

Query: 1806 ENKD----IQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHP 1973
             N      IQ  F   LW +W+ RN  +F++           A   + +F ++   +   
Sbjct: 1219 LNCKEPFAIQ-LFCTTLWKIWFFRNQTIFKNLAFDPIRVSCAAQNFVSEFSVSSTPREQS 1277

Query: 1974 QIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVDV 2153
              +     W  PP    K+N DA          G ++R+H   ++   ++K        V
Sbjct: 1278 TGQQPRCDWVAPPPDFFKLNVDAGCGSMGQVSWGLVIRNHNAEVVFAATKKTEFVAEAVV 1337

Query: 2154 AEAIACREGL 2183
            AEA+  R GL
Sbjct: 1338 AEALGLRWGL 1347


>gb|PRQ55763.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1228

 Score =  605 bits (1560), Expect = 0.0
 Identities = 322/734 (43%), Positives = 443/734 (60%), Gaps = 5/734 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFVPGRLI+DN+L AFEI H +K  +    G  ALKLDMSKAYDRVEW FL +VM + 
Sbjct: 388  QSAFVPGRLISDNSLAAFEISHFLKRRRRGHVGYGALKLDMSKAYDRVEWGFLDRVMQQL 447

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GF       VMRCV+TVSYS + NG P     P+RGLRQGD +SPYLFL CAE  S LI 
Sbjct: 448  GFCPKWRGWVMRCVTTVSYSFIVNGTPRGRVVPSRGLRQGDSISPYLFLICAETLSRLIL 507

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K+E  G++HG++IC  APPISHLFFADDS IF +A   E + +KR+ + Y  ASGQ++NF
Sbjct: 508  KAEDMGSIHGVRICTGAPPISHLFFADDSFIFFKAETDECDVLKRMFEQYEKASGQMINF 567

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKS +SFS  V  +  D LA ++ V  V KH  YLGLP  I  SK   F  L ++V K+ 
Sbjct: 568  DKSCVSFSKNVKRAKQDELAASLRVLRVDKHDKYLGLPTEISYSKSEAFNFLSEKVRKRT 627

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            + W++  LS AGK I+IK+VAQSIPTY+MSCF++P+  C ++  L+A FWWG K+++KKI
Sbjct: 628  QGWRAKTLSAAGKEIMIKAVAQSIPTYVMSCFELPKHLCLEMHRLMAQFWWGDKSNDKKI 687

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W KLC PK  GGLGFR++  FN+A+LAKQGWR++ + ++LLAR  KA+Y+PN DF+
Sbjct: 688  HWLAWEKLCVPKAEGGLGFRNMVQFNQALLAKQGWRIIQNPNSLLARLYKAKYFPNCDFM 747

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A      S+ W+SI+ GRE+++KG R  VGNG++I VW D WL    +FRP ++  E  
Sbjct: 748  KAEASSGSSYAWKSILFGRELLRKGLRLQVGNGSQIAVWTDQWLPLPHSFRPISTPKEGL 807

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
              ++V EL+   + EW+  L+ ++F   +V+ I SIPL      D   WH+   G Y VK
Sbjct: 808  ETLRVDELIDQEENEWHMFLLQELFMPLEVNLIASIPLSLRRPVDRWVWHHDKKGMYDVK 867

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTAL----WKWIWKLNIPAKVQIFLWKVAHGILPVRAS 1613
            SGY +A  +    ++  S ST    L    WK +W   IP KV++F+W++  GILP +  
Sbjct: 868  SGYHIARIVDGATER-ASCSTGPVGLNGKYWKLVWHARIPPKVRMFIWRLLKGILPTKHE 926

Query: 1614 LSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLE 1793
            L +K  + D  C  C    E   H  RDC +   FW    + L  ++   +A++ + +  
Sbjct: 927  LCKKVALPDFECVFCHGAGEHGLHLFRDCSYIACFWALGELDL-KVVDVMAASLEEWVKN 985

Query: 1794 MSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHP 1973
            +  +  +  +  F + LW +W  RN LV+             A K L ++Q     +   
Sbjct: 986  VIDVITEHHRNLFFVYLWVIWSERNNLVWNGSVFNAYNAAQWASKFLGEYQQVHPTRQKK 1045

Query: 1974 QIRDLCPFWQRPPEGIIKVNSDASVLPTIGT-GIGALLRDHEGRIIRVISRKFAQKYSVD 2150
              R     W+ PP G +K+N D S  P  G  GIG ++RD +G  +  ++R F    S  
Sbjct: 1046 SGRTRAK-WENPPTGRLKINIDGSYRPESGDGGIGVVIRDDKGSCMAAMARYFPNVLSAF 1104

Query: 2151 VAEAIACREGLILA 2192
              EA ACR GL+LA
Sbjct: 1105 HMEAEACRAGLLLA 1118


>gb|PNY15111.1| ribonuclease H [Trifolium pratense]
          Length = 1334

 Score =  607 bits (1564), Expect = 0.0
 Identities = 315/723 (43%), Positives = 428/723 (59%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFV GRLITDNAL+A E FH MK  K  ++G+ ALKLDMSKAYDR+EW F+   +   
Sbjct: 512  QSAFVQGRLITDNALIAMECFHWMKKKKRGKKGTMALKLDMSKAYDRIEWTFVKATLNSM 571

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GFP  +V L+M+C+ TVSY IL NG P  +FTP RGLRQGDPLSPYLF+ CA+  S L++
Sbjct: 572  GFPCKLVDLIMKCICTVSYQILINGQPSKLFTPERGLRQGDPLSPYLFILCADVLSGLVK 631

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K    G++HGI+I R+AP ISHLFFADDS++F RA+  E   I  ++  Y  ASGQVVN 
Sbjct: 632  KQAETGSMHGIQIARQAPKISHLFFADDSLLFARASAAEAGVILNVLAEYQKASGQVVNL 691

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKSE+SFS  V N   D +   MGV+ V  H  YLGLP   GRSKK IF  +IDRV KKL
Sbjct: 692  DKSEVSFSQNVRNEDKDMIRNRMGVKTVDTHSKYLGLPVVFGRSKKIIFSFVIDRVWKKL 751

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK ILIK+VAQ+IP YIM C+++P   C +I++++A FWWG K  E+KI
Sbjct: 752  KGWKEKCLSRAGKEILIKAVAQAIPNYIMGCYKLPNSCCQEIETMLAKFWWGSKGGERKI 811

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W +L K K +GG+GFR I+ FNKA+L K  WRL+  E++L+ R  K+RY+P   FL
Sbjct: 812  HWMSWERLSKTKKDGGMGFRGINNFNKALLGKHCWRLMTGEESLMGRIFKSRYFPRTSFL 871

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A IGY PS+ WRSI +  ++++ G+RW +GNG  +++  D WL  +  F+  +   E  
Sbjct: 872  EAKIGYQPSYAWRSIQSATDVMKLGTRWRIGNGESVKIREDRWLPNQVGFKVWSRGEELE 931

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
                VS L+ P  ++WN  LV Q F  D+  +I+SIP+   L  D + WHY   G+YSV+
Sbjct: 932  NGALVSALIDPDTKQWNRQLVVQTFYPDEAKQILSIPISQRLPADKIIWHYERDGEYSVR 991

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S + L L   N      SS      LW+ IWK  +P +V+ FLW++   ILP RA+L RK
Sbjct: 992  SAHHL-LKQHNSRDVAASSGQQMNNLWREIWKAPVPNRVRNFLWRLGKNILPTRANLVRK 1050

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSKI 1805
                + LC +C    ET++H    CH +   W AS +         S  +   LL+    
Sbjct: 1051 GVQIENLCPQCHSAPETIDHLFLHCHLTQLTWFASQL---GARVPQSVPVHIWLLQGLTC 1107

Query: 1806 ENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHPQIRD 1985
            ++      F +L+W +W ARN LVF +K +        A+  + +   + ++     ++D
Sbjct: 1108 DDTRGAQLFCVLMWKIWNARNNLVFNNKLVDPIAIAQEAMYFMQELSPSPHEHNATPMQD 1167

Query: 1986 LCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVDVAEAI 2165
                 Q  P        DA       TG G ++ +  GR++    RK        +AEAI
Sbjct: 1168 AVLAAQPMPSAPHVFYVDAGCFSGNATGWGMVIYNQSGRVVLSACRKELIDVEPVLAEAI 1227

Query: 2166 ACR 2174
              R
Sbjct: 1228 GVR 1230


>gb|PNY14301.1| ribonuclease H [Trifolium pratense]
          Length = 1196

 Score =  600 bits (1547), Expect = 0.0
 Identities = 315/731 (43%), Positives = 437/731 (59%), Gaps = 2/731 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFV GRLI+DNAL+A E FH +K  K  ++G  ALKLDMSKAYDR+EW F++ V+   
Sbjct: 371  QSAFVQGRLISDNALIAMECFHWLKKKKQGKKGMMALKLDMSKAYDRIEWSFVNHVLTSM 430

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            G+    V L+MRC+++VSY IL NG P   F P RGLRQGDPLSPYLF+ CA+  S L+ 
Sbjct: 431  GYSQKFVELIMRCITSVSYQILINGQPSTTFFPERGLRQGDPLSPYLFILCADVLSGLLH 490

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K+ +   LHGIK+ R AP +SHLFFADDS++F RAN+ E   I +I+ TY  ASGQVVN 
Sbjct: 491  KASVSKKLHGIKVARSAPQLSHLFFADDSLLFSRANSDEAHTIMKILKTYQNASGQVVNL 550

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKSE SFS  VP+   +++   MGV+ V     YLG P   GRSKK IF  ++DR+ KK+
Sbjct: 551  DKSEASFSRNVPSIDKNSICNMMGVKAVEAQSRYLGFPIPFGRSKKVIFSFVMDRIWKKV 610

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK  LIK+VAQ+IP YI+SC+++P   C  ID+++A FWWG   D++KI
Sbjct: 611  KGWKERCLSRAGKETLIKAVAQAIPNYILSCYKMPLGCCKDIDAMLAKFWWGSNDDKRKI 670

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W++L KPK  GG+GFR +  FNKA+L K  WRL+  E +LL + L++RYYP GDF+
Sbjct: 671  HWMSWKRLSKPKNTGGMGFRGMEDFNKALLGKHCWRLVGGECSLLEKVLRSRYYPKGDFM 730

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
            TAS GY PSF WRSI++ RE+I  G RW VGNG  +++W+D W+  R   R  T   +  
Sbjct: 731  TASEGYQPSFAWRSIISAREVINLGERWCVGNGQNVRIWKDRWMVDRNLLRSRTPSCDLD 790

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             D KVS L+    ++WN TLV   F+E +  KI+SIPL   L  D   WH+  +G YSV+
Sbjct: 791  EDSKVSALIDHDTRQWNRTLVFNCFDEAEAKKIVSIPLSCRLPLDNRIWHWEKNGAYSVR 850

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S Y L    K +L+  PS   +   +WK IWK  +P K++ FLW++   ILP R +L++K
Sbjct: 851  SAYHLLCDEKRKLEPGPSIVREE-KIWKEIWKAPLPNKIKNFLWRLVKDILPTRENLAKK 909

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSKI 1805
                D  C  C   +E+  H    C+       AS     NL +    ++   +  +S +
Sbjct: 910  GINLDLSCPLCHHVLESSNHLFMHCNIMRLTLFAS-----NLGSHIPHSVDLSVWILSWL 964

Query: 1806 ENKDIQCT--FAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHPQI 1979
              KD+  T  F +LLW  WY RN ++F+D           A++ +H+F  A  ++ +  +
Sbjct: 965  TCKDMIGTQLFCVLLWKFWYGRNQVIFKDAVFDPILLAADAIEYVHEFNEANPRRCNQVV 1024

Query: 1980 RDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVDVAE 2159
                   +     +  + +DA       TG G +LR+ +G       ++   +    +AE
Sbjct: 1025 LQHISAPRLDDSNMQLMFTDAGCFNNGYTGWGLVLRNVDGTTSFSACKRENIEVEPALAE 1084

Query: 2160 AIACREGLILA 2192
            A+  R  L  A
Sbjct: 1085 ALGVRWALEFA 1095


>gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]
          Length = 696

 Score =  581 bits (1497), Expect = 0.0
 Identities = 279/577 (48%), Positives = 377/577 (65%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFV GRLITDNAL+A E FH MK  K  ++G+ ALKLDMSKAYDR+EW+F+   +   
Sbjct: 98   QSAFVQGRLITDNALIAMECFHWMKKKKKGKKGTMALKLDMSKAYDRIEWNFVKATLKSM 157

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            GFPS++V L++ C+STVSY IL NG P   F P RGLRQGDPLSPYLF+ CA+  S L++
Sbjct: 158  GFPSNVVDLILNCISTVSYQILINGQPSKSFNPERGLRQGDPLSPYLFILCADVLSGLMK 217

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            +  + G +HGIKI R+AP ISHL FADDS++F RA++ E + I  ++  Y  ASGQVVN 
Sbjct: 218  RKAVTGGIHGIKIARQAPKISHLLFADDSLLFARASSTEADVILSVLAEYQQASGQVVNL 277

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKSE+SFS  V N   + +   MGV+ V  H  YLGLP   GRSKK IF  +IDRV KK+
Sbjct: 278  DKSEVSFSQNVRNEEKEMIRNRMGVKTVDNHSKYLGLPVVFGRSKKLIFSLVIDRVWKKV 337

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK ILIK+VAQ+IP YIMSC+++PE  C +I+S++A FWWG K  ++KI
Sbjct: 338  KGWKENYLSRAGKEILIKAVAQAIPNYIMSCYKLPESCCQEIESMLAKFWWGSKEGKRKI 397

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W +L K K  GG+GFR IS FN A+L K  WRL   E++L+ R  K+RYYP   F+
Sbjct: 398  HWMSWERLSKSKKGGGMGFRGISNFNSALLGKHCWRLTTGEESLMGRVFKSRYYPRASFM 457

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A IGY PS+ WRSI + +E+I  GSRW +GNG ++++ +D WL  +  F+  +   E  
Sbjct: 458  EAKIGYQPSYAWRSIQSAKEVIILGSRWRIGNGEKVKICKDKWLPNQVGFKVWSRCDELE 517

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             D  VS L+ P  ++W   LV+ IF   +  +I+S+P+   L  D + WH+  +G+YSV+
Sbjct: 518  EDALVSTLIDPDTKQWKRDLVSHIFFPHEAKQILSLPISPRLPSDKIIWHFERNGEYSVR 577

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S + L L   +      +S      LW+ IW   +P +V+ FLW++   ILP RA+LSRK
Sbjct: 578  SAHHL-LKQHSSRNAAGTSGQQTDILWREIWXAPVPNRVRNFLWRLGKNILPTRANLSRK 636

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPV 1736
                + LC +C +  ET++H    C  +   W AS +
Sbjct: 637  GVQVENLCPQCNNAPETIDHLFLHCQLAQLTWFASQI 673


>ref|XP_023905045.1| uncharacterized protein LOC112016795 [Quercus suber]
          Length = 1373

 Score =  602 bits (1552), Expect = 0.0
 Identities = 313/739 (42%), Positives = 439/739 (59%), Gaps = 12/739 (1%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+  RLITDN L+AFE  H +   ++ R G  ALKLDMSKA+DRVEW  LH +MLK
Sbjct: 543  NQSAFMSTRLITDNVLVAFETMHHLNQKRSGRVGEMALKLDMSKAFDRVEWGCLHDIMLK 602

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GF +  V+L+M CV++V+YSI  NG P    TPTRGLRQGDP+SP+LFLFCAE  S+L+
Sbjct: 603  MGFHTKWVNLMMLCVTSVTYSIRINGEPRGHITPTRGLRQGDPISPFLFLFCAEGLSALL 662

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             ++   G +HG+  C R P ISHLFFADDSIIF RA N E   ++ I++TY  ASGQ +N
Sbjct: 663  NQASRSGAIHGVAACPRGPRISHLFFADDSIIFCRATNAECAHLEHILETYEQASGQQLN 722

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
             DK+ + FS        + +    G +++ +H  YLGLP+ +GRSK+  F+ L +R+  K
Sbjct: 723  RDKTALFFSQNTALEVQEDIKHRFGAEVIRQHETYLGLPSLVGRSKRNTFRALKERLDNK 782

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            L  WK  +LS AGK +LIK+VAQ+IPTY MS F++P   C ++ S + NFWWGQK    K
Sbjct: 783  LSGWKEKLLSQAGKEVLIKAVAQAIPTYTMSVFKLPNSLCDEMTSTVRNFWWGQKEGRNK 842

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            + W+ W K+C PK +GGLGFRD+ AFN A+LAKQGWRL  +  +L+ R LKARY+P+ DF
Sbjct: 843  MAWLSWEKMCAPKKDGGLGFRDLKAFNMALLAKQGWRLQSNTRSLVHRVLKARYFPDRDF 902

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            L A +G  PS+ WRSI+A +++++ G RW VG+G  IQ+WRD WL     FR  ++    
Sbjct: 903  LHAELGRTPSYAWRSIMAAQDVVKAGHRWQVGDGTSIQIWRDKWLPKPSTFRVISTPNTL 962

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
                 VSEL+     EWN  LV  +F  DD   I+ IP  +    D + W YT  G ++V
Sbjct: 963  NEAATVSELIDEVTGEWNVDLVKHVFLPDDAHTILGIPRSSKRNRDRMIWAYTPKGTFTV 1022

Query: 1443 KSGYQLALSL-KNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
             S Y++ALSL +++ ++  S ++ H+  W+ IW L IP K++ F W+ +  ILP +A+L 
Sbjct: 1023 NSAYKVALSLSQSKAKEETSDASSHSQFWQKIWSLRIPNKLKTFAWRASRNILPTKANLC 1082

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADML--LE 1793
             +  + DP C  CG   ET  H   DC  +   W A+ +  +NL         D+L  L 
Sbjct: 1083 SRGVIDDPTCDACGLNAETSGHLFWDCRHAHEVWTATGIPFDNL-GVHYRDFIDLLWYLI 1141

Query: 1794 MSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHP 1973
              +   +D+      + W +WY RN +          E    A   + DFQLA    P P
Sbjct: 1142 FRQHVGQDVLELIITIAWCMWYNRNRVRHGSPRQSSNEILHKARTVMEDFQLAHFACPQP 1201

Query: 1974 QIRDLCPFWQRPPEGIIKVNSDASVLPTIGT-GIGALLRDHEGRIIRVISRKF------- 2129
                L   W  P     KVN+DA++   +G+ GIG ++RDH G +I  +S+         
Sbjct: 1202 -TDPLDTRWVPPSSPWFKVNTDAAIFKNLGSVGIGTVIRDHAGMVIAALSQHLHLPLGPL 1260

Query: 2130 -AQKYSVDVAEAIACREGL 2183
             A+  ++DVA + A   G+
Sbjct: 1261 EAEAKAMDVAVSFAWDVGV 1279


>gb|PNX71213.1| ribonuclease H [Trifolium pratense]
          Length = 951

 Score =  589 bits (1518), Expect = 0.0
 Identities = 303/740 (40%), Positives = 432/740 (58%), Gaps = 7/740 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAFV  RLITDN L+AFEIF+  K+    ++G   +K DM+KAYDRVEW+FL   +  
Sbjct: 117  NQSAFVQDRLITDNTLVAFEIFNYFKHTNR-KKGFVGIKTDMAKAYDRVEWNFLRATLEA 175

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP H+ + +++CV+TV +SIL NG P   F P RGLRQGDPLSP+LF+ CA+  S LI
Sbjct: 176  MGFPQHLTNTILQCVTTVQFSILINGNPSTPFRPQRGLRQGDPLSPFLFIICADVLSGLI 235

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             +++ +  +HG+K+   AP I+HL FADDS+ F RA   E   ++ II  Y  ASGQ+VN
Sbjct: 236  TQAKNKQLIHGVKVANGAPEITHLLFADDSLFFCRATKQEATNVRNIILDYQRASGQLVN 295

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
              KSEI FS  VPN     +   + +  V     YLG+P  IGRSK+ IF  + DRV KK
Sbjct: 296  MQKSEIIFSKMVPNEVKVEVNHILPMTRVDHFSKYLGMPTDIGRSKQQIFNYIKDRVWKK 355

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  L+K+V Q+IPTYIMSCF +P+  C QI+S+ +NFWWG   D+KK
Sbjct: 356  LKGWKEKNLSYAGRGTLLKAVIQAIPTYIMSCFLLPKGLCKQIESMTSNFWWGSNTDKKK 415

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            +HWI W+K+CK K  GG GFR+   FN+A+LAKQGWR+    D+L+A+  KA+Y+P   F
Sbjct: 416  LHWINWKKMCKNKTQGGYGFRNTCMFNEALLAKQGWRIATQPDSLVAKVYKAKYFPKCQF 475

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            + A  G   S+TWRSI+  R I+QKG  W +GNG  + +W+D WL  +  F+  +++  +
Sbjct: 476  MEAKNGNMLSYTWRSILHARWILQKGCFWTIGNGESVNIWKDSWLPKQNGFKVWSTQQGY 535

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
                 V +L+ P   +WN  L+ QIF   + ++I+ +PL      D L W  T  G Y+V
Sbjct: 536  TRYNLVKDLINPATNQWNQNLIHQIFLPFEANQILQLPLVEPNSKDELVWSGTKDGLYTV 595

Query: 1443 KSGYQLALSLKNELQQLPSSSTDHTAL-WKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
            KSGY  A+   +      SS+   T L W+ +WKL IP K    +W++ +  LPVR+SLS
Sbjct: 596  KSGYHAAMEWNHLRHNQVSSNAIATDLTWQNLWKLKIPPKHATLIWRILNHSLPVRSSLS 655

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMS 1799
             K    +P C RC  ++ET++H    C W+   W  SP+ ++        + ++ L  M 
Sbjct: 656  SKGIQCNPTCPRCNTSLETIDHVFMQCEWAKVVWFGSPMTIHFNTTDRHQSFSEWLSTML 715

Query: 1800 KIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHP-- 1973
            K +N++     A L + +W ARN+LVFQDKN+P       A+ S  ++Q   +    P  
Sbjct: 716  KTKNQECMAPIAALTYHIWRARNLLVFQDKNVPVMCVVQQAISSSIEYQTLGHPHRLPMC 775

Query: 1974 ----QIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKY 2141
                Q R     W  PP   +K+N DA        G+G +LR  EG+ +   +   +   
Sbjct: 776  AAATQPRGNNTNWTPPPRNSLKLNVDAHPCGDGRWGLGMVLRTEEGKCVGAKTVVVSGLS 835

Query: 2142 SVDVAEAIACREGLILAKSL 2201
             +   EA+     +  A+SL
Sbjct: 836  DILDGEALGLNVAIDFAQSL 855


>ref|XP_024156142.1| uncharacterized protein LOC112164137 [Rosa chinensis]
          Length = 1293

 Score =  598 bits (1543), Expect = 0.0
 Identities = 315/735 (42%), Positives = 432/735 (58%), Gaps = 5/735 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAFVPGR I+DN+LLAFE+ H +K       G  ALKLDMSKAYDRVEW+F+  VM  
Sbjct: 345  TQSAFVPGRQISDNSLLAFELSHFLKRRTGGSHGYGALKLDMSKAYDRVEWEFIEAVMRS 404

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GF    ++ +M CV+TVSYS L NG P     PTRGLRQGD +SPYLFL CAE  S ++
Sbjct: 405  MGFDQIWINWIMGCVTTVSYSFLLNGEPRGHLIPTRGLRQGDSISPYLFLLCAEGLSRML 464

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
               E Q  LHGI I   AP I+HLFFADDS +F +A   E   +K I+  Y  ASGQ VN
Sbjct: 465  SYEEEQHRLHGIAIAMGAPSINHLFFADDSFVFMKAEREECARVKEILKWYEDASGQQVN 524

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
            F KS+ISFS  V     + LA   GV+ V KH  YLGLP  +  SK   FQ ++++   K
Sbjct: 525  FQKSKISFSKNVDIGCQEELAEVFGVERVDKHDKYLGLPTKVSYSKIEAFQFIMEKTKNK 584

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            +KNWK   LS AGK ++IKSV QS+PTY+MSCF++P+  C ++   +A FWWG     +K
Sbjct: 585  MKNWKDKTLSVAGKEVMIKSVVQSVPTYVMSCFELPKHLCQEMHRCMAEFWWGDSEKGRK 644

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHW+ W K+C PK  GGLGFR++  FN+A+LAKQGWR+L   D+LL +TLKA+Y+PN DF
Sbjct: 645  IHWLAWDKMCVPKEEGGLGFRNMEYFNQALLAKQGWRILRHPDSLLGKTLKAKYFPNNDF 704

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            + AS+    S+TWRS++ G+ +++KG R+ VG G RI VW DPW+    +FRP ++  E 
Sbjct: 705  IHASVNQGDSYTWRSLMKGKVLLEKGLRFQVGLGTRISVWFDPWIPRPYSFRPYSTVMEG 764

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
              D+ V++L+ P  ++W    + ++F  D+VD I  IPL     +D L WH+   G YSV
Sbjct: 765  LEDLTVADLIDPDSKDWMVDWLEELFFADEVDLIRKIPLSLRNPEDRLIWHFDKRGLYSV 824

Query: 1443 KSGYQLA---LSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRAS 1613
            KSGY +A    SL + +    S+S     LW+ +W   +  KV+ F+W++   I+P + +
Sbjct: 825  KSGYHVARCVASLSSHVS--TSNSQGDKDLWRRVWHARVQPKVRNFVWRLVKNIVPTKVN 882

Query: 1614 LSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLE 1793
            L R+  + + +C  C    ET  H   +C+     W  S + L     TT+ ++ + +L+
Sbjct: 883  LGRRVNLDERICPFCRCESETTLHVFMECNVIACMWLFSSLGLRAKNHTTN-SVKEWVLD 941

Query: 1794 MSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLAR-NKQPH 1970
            M  + NK     F MLLW +W  RN LV+             ++  L ++Q     K  H
Sbjct: 942  MLDVLNKSQVDIFFMLLWAIWSERNKLVWNGGTFNPMHTVTWSMHLLSEYQRCHPEKSTH 1001

Query: 1971 PQIRDLCPFWQRPPEGIIKVNSDASVLPTIGT-GIGALLRDHEGRIIRVISRKFAQKYSV 2147
               R     W  PP G +K+N D +     G  GIG ++RD  G      SRK    YS 
Sbjct: 1002 KSPRGAAAKWMFPPRGRLKINVDGAYKSNEGCGGIGVVVRDEMGIFRGARSRKIPYMYSA 1061

Query: 2148 DVAEAIACREGLILA 2192
               EA ACR GL++A
Sbjct: 1062 FHGEAEACRAGLLMA 1076


>gb|PNY03092.1| ribonuclease H [Trifolium pratense]
          Length = 970

 Score =  585 bits (1509), Expect = 0.0
 Identities = 300/741 (40%), Positives = 436/741 (58%), Gaps = 8/741 (1%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN ++A +IF+ + +    + G   +K DM+KAYDRVEWDFL   +  
Sbjct: 153  NQSAFIQGRLITDNTIIASDIFNYLSHTNR-KNGFVGIKTDMAKAYDRVEWDFLEATLTA 211

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFP+ ++ ++M+CV+TV++SIL NG P   F P RG+RQGDPLSPYLF+ CA+  S LI
Sbjct: 212  MGFPTKMIQIIMKCVTTVTFSILINGHPSIEFQPQRGIRQGDPLSPYLFIICADVLSGLI 271

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             K++ + ++HG+KI   AP ISHL FADDS+ F RA   E+  I  II TY  ASGQ+VN
Sbjct: 272  TKAQKEHSIHGVKIAPGAPEISHLLFADDSLFFCRATTGEVNTISNIIQTYQEASGQLVN 331

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
              KSE+ FS GVPN+  D +++ + +Q++     YLG+P  IGRSK             +
Sbjct: 332  LTKSEMVFSKGVPNTIKDDISKILPIQILDHFSKYLGMPTFIGRSKN------------Q 379

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+ ILIK+VAQ+IP YIMS F IP++ C Q++ +I NFWWG   D +K
Sbjct: 380  LKGWKERNLSFAGRGILIKAVAQAIPNYIMSSFLIPKEVCAQMEKMICNFWWGSTTDSRK 439

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHWI W+K+C+ K  GGLGFR++ AFN+A+LAKQGWR++    +L+A+ LKA+Y+PN  F
Sbjct: 440  IHWINWQKICRQKKTGGLGFRELRAFNEALLAKQGWRIICQPSSLMAQVLKAKYFPNDQF 499

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            L A    + S+TWRSI+  R II+KG  W +G G  + +W+D W+  + N    +S+   
Sbjct: 500  LQAKPKQHMSYTWRSILQARWIIKKGCYWNIGTGEEVDIWKDNWIHQKGNSSTWSSKPNL 559

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
                KV +++      WN+T++ Q+F   +  KI+ IP+      D L W  T  G Y+V
Sbjct: 560  TTHHKVKDIMNIHNNSWNETIINQLFLPIEAQKILQIPITGTSQPDALIWAGTIDGHYTV 619

Query: 1443 KSGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSR 1622
            KSGYQ         Q   S+S ++  +W  +WKLNIP K    LW+  +  +PV+ +L +
Sbjct: 620  KSGYQAITEWSESTQ--ASTSANNDDIWPMLWKLNIPPKHSHLLWRALNEAIPVKGNLFK 677

Query: 1623 KKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSK 1802
            K    DPLC RC + +ET+ HA  DC W+   W +S + + NL       + D ++ M K
Sbjct: 678  KGVKCDPLCPRCFNHVETIHHAFLDCVWAKQMWFSSNLTI-NLNHCQHTNLHDWVMHMFK 736

Query: 1803 IENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQ--------LARN 1958
              ++  +      L+ +WYARN+LVFQ K++P  E   +A+  L ++Q        + + 
Sbjct: 737  QTDQASRELITSNLYGIWYARNLLVFQGKSLPPHEVSSIALAQLQEYQKHCIKKNFVNQT 796

Query: 1959 KQPHPQIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQK 2138
            +       + C  W  PP G +K+N DA +        G +LR  +G  I   +R  A+ 
Sbjct: 797  RATGNSSNNNC--WSPPPRGTLKINVDAHLGGDGHWFSGIILRGCDGNAIGAATRLHAKS 854

Query: 2139 YSVDVAEAIACREGLILAKSL 2201
              +   EA      L L + L
Sbjct: 855  NEIIQGEAFGINAALDLVEXL 875


>gb|PNX72264.1| ribonuclease H [Trifolium pratense]
          Length = 854

 Score =  581 bits (1497), Expect = 0.0
 Identities = 311/730 (42%), Positives = 422/730 (57%), Gaps = 2/730 (0%)
 Frame = +3

Query: 6    QSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLKF 185
            QSAFV GRLITDNAL+A E FH +K  +  ++G  ALKLDMSKAYDRVEW F+HQ +L  
Sbjct: 24   QSAFVQGRLITDNALIAMECFHWLKKKRKGKKGVMALKLDMSKAYDRVEWPFVHQTLLSM 83

Query: 186  GFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLIR 365
            G+P+ +  L++RC+S+VSY IL NG P   F+P RGLRQGDPLSPYLF+ CA+  S LI 
Sbjct: 84   GYPNKMADLILRCISSVSYQILINGQPSKSFSPERGLRQGDPLSPYLFILCADVLSGLIH 143

Query: 366  KSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVNF 545
            K+     +HGIK+ R AP +SHLFFADDS++F RA++HE   I  I+ TY  ASGQ+VN 
Sbjct: 144  KAANSKEIHGIKVARTAPRLSHLFFADDSLLFSRASSHEASTILNILATYEQASGQMVNL 203

Query: 546  DKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKKL 725
            DKSE SFS  V     D +   MG + V  H  YLG P   GRSKKA+F  ++DRV KK+
Sbjct: 204  DKSEASFSRNVRIEDKDMICNMMGAKAVEAHSRYLGFPIPFGRSKKAVFSFVMDRVWKKV 263

Query: 726  KNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKKI 905
            K WK   LS AGK  LIK+VAQ+IP YI+SC+++P   C  IDS++A FWWG   + +KI
Sbjct: 264  KGWKERFLSRAGKETLIKAVAQAIPNYILSCYKMPVGCCKDIDSMLAKFWWGSNEERRKI 323

Query: 906  HWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDFL 1085
            HW+ W +L K K++GG+GFR +  FNKA+L K  WRL+  E +LL + LK+RYYP G+FL
Sbjct: 324  HWMSWERLSKAKLDGGMGFRGMEDFNKALLGKHCWRLVTGESSLLEKVLKSRYYPRGNFL 383

Query: 1086 TASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEWP 1265
             A  GY PS+ WRSI++ R+++ KG  W +GNG+ +++W+D W+   +           P
Sbjct: 384  CAKEGYQPSYGWRSILSARDLVTKGGVWKIGNGSNVRIWKDTWMADLKCIESRGPNCPLP 443

Query: 1266 LDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSVK 1445
             D  VS+L+    ++W   ++   FN      IISIPL   L  D L W++   G+YSV+
Sbjct: 444  EDALVSDLIDVDTKQWKRDMIFSCFNRQVAQTIISIPLSFRLPQDTLIWNWEKDGEYSVR 503

Query: 1446 SGYQLALSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLSRK 1625
            S Y L    K  LQ  PS     + LWK IW+  +P KV+ FLW++A  ILP R +L  K
Sbjct: 504  SAYHLLCDEKARLQPGPSCPR-RSKLWKEIWRAPVPNKVKNFLWRLAKNILPTRTNLHNK 562

Query: 1626 KCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLEMSKI 1805
                D  C  C    E+ +H    C        AS +  +  M   +  + D +LE    
Sbjct: 563  GITLDLQCPLCFREEESSQHLFLKCDIFKLTLFASHLGSHIPM---NIDLHDWILEWLLC 619

Query: 1806 ENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNKQPHPQIRD 1985
            ++      F +LLW  W  RN  VF    +      + A+  +HDF  A   +       
Sbjct: 620  QDPMGVQLFCVLLWKFWAGRNAAVFNGVQLDPGRLAIDAMSFVHDFNEANPPRCRRAPVA 679

Query: 1986 LCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRKFAQKYSVD--VAE 2159
              P        I  +  DA    +  T  G +LR+ +G    V+S    + + VD  +AE
Sbjct: 680  HVPIQPGMTNPIFSLFVDAGCSNSGHTVWGLVLRNSDGE--TVLSACKREDFYVDPLMAE 737

Query: 2160 AIACREGLIL 2189
            A+  R  L L
Sbjct: 738  ALGVRWALQL 747


>gb|PNY07715.1| ribonuclease H [Trifolium pratense]
          Length = 1567

 Score =  598 bits (1542), Expect = 0.0
 Identities = 308/739 (41%), Positives = 442/739 (59%), Gaps = 12/739 (1%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFA-LKLDMSKAYDRVEWDFLHQVML 179
            +QSAFVPGRLITDN L+A EIFH +  N+  R+  +  +K DM+KAYDRVEW FL   + 
Sbjct: 718  NQSAFVPGRLITDNTLVANEIFHYL--NQTNRQNGYVGIKTDMAKAYDRVEWGFLQATLE 775

Query: 180  KFGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSL 359
               FP  I++ +M+CV+TVS+SIL NG P   F PTRGLRQGDPLSPYLF+ CA+  S+L
Sbjct: 776  SMNFPPKIINTIMQCVTTVSFSILINGSPTKAFLPTRGLRQGDPLSPYLFILCADVLSAL 835

Query: 360  IRKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVV 539
            I  ++    +HG+KI  RAP I+HLFFADDSI+F RA   E E +K +I  Y  ASGQ+V
Sbjct: 836  ISSAQENKLIHGVKIAPRAPEITHLFFADDSIMFCRATIEETEHMKMLISKYQQASGQLV 895

Query: 540  NFDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSK 719
            N+ KSE+ FS  V +S   T+ + + + +V     YLG P  IGRSKK  F  + D+V K
Sbjct: 896  NYHKSELIFSKKVNHSIRMTIQQILPMTMVDHFSKYLGQPTVIGRSKKQAFSFIQDKVWK 955

Query: 720  KLKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEK 899
            KLK WK   LS AG+  LIK+VAQ+IPTY+MS F +P+  C+ ++ + + FWWG   D++
Sbjct: 956  KLKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGLCNLLEQMSSKFWWGSNVDQR 1015

Query: 900  KIHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGD 1079
            KIHW+ WRK CK K  GG+GFRDI AFN+A+LAKQGWR+L + ++L+A+ LKA+Y+P+G+
Sbjct: 1016 KIHWVNWRKTCKQKNQGGMGFRDIRAFNEALLAKQGWRILTEPNSLVAKILKAKYFPHGN 1075

Query: 1080 FLTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGE 1259
            FL A+ G   S++W+SI     I++KG  WLV NG  I +W D W+  + N    T +  
Sbjct: 1076 FLQATQGKKSSYSWQSIQKASWILKKGCFWLVENGQNINIWEDRWINPQGNSTTWTPKPI 1135

Query: 1260 WPLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYS 1439
                 KV +L+ P    WN+ ++++ F   + ++I+ IPL N + +DI++W  T  G Y+
Sbjct: 1136 NTNLEKVKDLINPTTHTWNEPVISKTFFPIEANQILQIPLSNTMTEDIISWQGTKDGNYT 1195

Query: 1440 VKSGYQLALSLKNELQQLPSSSTDH--TALWKWIWKLNIPAKVQIFLWKVAHGILPVRAS 1613
            VKSGY   +   N       +S +H     W  IW + +P K    LW++ H  +PV+ +
Sbjct: 1196 VKSGYNAQMEWANVESSQAQTSNNHKDEPFWNKIWNIKVPPKQIHLLWRIMHNAIPVKTN 1255

Query: 1614 LSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASP--VRLNNLMATTSATMADML 1787
            L +K  + D LC RC    ET++H    C W+   W  SP  ++  N+   T       +
Sbjct: 1256 LIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVWFYSPLTIKTTNIQLHTFHEWIKYM 1315

Query: 1788 LEMSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQ------- 1946
            L  +  E+  I    + + +++W+ARN  VFQ+K+IP  E    A+K++HDFQ       
Sbjct: 1316 LHNTTKESMQI---LSSITYSIWFARNKKVFQNKDIPVNETVDRALKNIHDFQHHLTEAC 1372

Query: 1947 LARNKQPHPQIRDLCPFWQRPPEGIIKVNSDASVLPTIGTGIGALLRDHEGRIIRVISRK 2126
             A      P +      W  PP   +K+N DA +      G+G +LR  +GR +  +++ 
Sbjct: 1373 FAPTNSKPPSVNRHNTSWNPPPRNFLKLNVDAHLSDDGHWGLGWVLRGVDGRCVGAVTKV 1432

Query: 2127 FAQKYSVDVAEAIACREGL 2183
                  V +AEA   RE L
Sbjct: 1433 LKGSDDVAMAEATGLREAL 1451


>ref|XP_023881891.1| uncharacterized protein LOC111994244 [Quercus suber]
          Length = 1198

 Score =  588 bits (1515), Expect = 0.0
 Identities = 310/741 (41%), Positives = 445/741 (60%), Gaps = 10/741 (1%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN L+AFE+ H +++ K  + G  A+KLDMSKAYDRVEW F+ QVM K
Sbjct: 376  NQSAFLSGRLITDNVLVAFELMHYLEHKKEGKEGFAAIKLDMSKAYDRVEWGFIKQVMEK 435

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GF    + LVM C+++VSYSIL NG      TPTRGLRQGDP+SPY+FL CA+ FSSL+
Sbjct: 436  MGFHEKWIKLVMHCITSVSYSILVNGGAYGSITPTRGLRQGDPISPYIFLLCADGFSSLL 495

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
                 +  + G+ ICR  P I+HLFFADDS++F +AN+ E + +  I+  Y  ASGQ +N
Sbjct: 496  NDVARKLRISGVSICRGCPKITHLFFADDSLLFCKANSQECQTLIDILQLYEDASGQKIN 555

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
             DKS + FS   P+     + R +G     +H  YLGLP+ IG+SK  IF  + +RV +K
Sbjct: 556  VDKSSVFFSNNTPDEKRCEVLRMLGHMQDTRHKKYLGLPSIIGKSKVEIFAEVKERVERK 615

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            L  WK  +LS  G+ ILIK+VAQ+IPTY MSCFQIP+  C +I++++  FWWGQ+  E K
Sbjct: 616  LSGWKEKLLSVGGREILIKAVAQAIPTYTMSCFQIPKTLCEEIEAMMRRFWWGQRGQESK 675

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            I W+ W+KLCK K NGG+GFR++ AFN AMLAKQGWRL+ + ++L+A+  KARYYP+GD 
Sbjct: 676  IAWVSWKKLCKAKKNGGMGFRNLQAFNLAMLAKQGWRLISNPNSLVAQIYKARYYPHGDV 735

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFR---PETSR 1253
              A +G +PS+TWRSI  G E++++G+RW VGNG RI +W D WL T   ++   P    
Sbjct: 736  FQAKLGASPSYTWRSIFNGLEVVRRGTRWRVGNGERILIWEDKWLPTPITYKVISPPKPF 795

Query: 1254 GEWPLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQ 1433
             ++P   +VS L+   ++ W D +V  +F   +   I+SIPL +   +D + W     G+
Sbjct: 796  DDYP---RVSALIDRERKRWKDDVVRDLFLPFEARTILSIPLSHNFPEDQIIWVGNRKGE 852

Query: 1434 YSVKSGYQLALSLKNELQQLPSSSTD-HTALWKWIWKLNIPAKVQIFLWKVAHGILPVRA 1610
            +SVKS Y +A+ + + L+   SSS D  + LW+ +W LNIP KV+IF WK+    LP   
Sbjct: 853  FSVKSAYYIAVGVIDNLEVGESSSGDSRSLLWRKLWHLNIPPKVRIFAWKMCMNALPTFL 912

Query: 1611 SLSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRA---SPVRLNNLMATTSATMAD 1781
            +L RK      +C  CG   E+  H    C  +   WR    +P  L N+    +  + D
Sbjct: 913  NLLRKGVNICDVCPACGMEPESNIHIFVKCEVAKRVWRCWLDNPADLVNV----NMDIVD 968

Query: 1782 MLLEMSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLARNK 1961
            + +++           F ++ W +W  RN +VF+  +   +  +  A+K + +F+ A   
Sbjct: 969  IAMKILDFGTPSDLEIFFVVAWAIWCNRNKIVFESLSQVPEFIWGFAIKYILEFKNASAT 1028

Query: 1962 --QPHPQIRDLCPFWQRPPEGIIKVNSDASVLP-TIGTGIGALLRDHEGRIIRVISRKFA 2132
              Q  PQ       W  PP G+ K+N D +       + +G ++RD  G +         
Sbjct: 1029 YCQILPQSDGK---WMAPPPGVFKINVDGATSEYGRNSSVGVIIRDATGDVCAACCTYLQ 1085

Query: 2133 QKYSVDVAEAIACREGLILAK 2195
             +YSV+  EA+A   GL+LAK
Sbjct: 1086 GQYSVEEVEALAMERGLLLAK 1106


>gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1066

 Score =  583 bits (1502), Expect = 0.0
 Identities = 287/624 (45%), Positives = 396/624 (63%), Gaps = 2/624 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAF+ GRLITDN L+A EIFH + + K  + G   +K DM+KAYDRVEWDFL   +  
Sbjct: 445  NQSAFIKGRLITDNTLIASEIFHYLAHTKR-KNGFVGIKTDMAKAYDRVEWDFLEATLST 503

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GFPS +V+ +M+CV TV +SIL NG P   F P RGLRQGDPLSPYLF+ CA+  S LI
Sbjct: 504  MGFPSTMVATIMKCVKTVKFSILINGHPSQEFYPQRGLRQGDPLSPYLFIICADVLSGLI 563

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
             K++ +  +HG+ IC+ AP ISHLFFADDS+IF R+N  E+  I+ II TY  ASGQ+VN
Sbjct: 564  TKAQKEKLIHGVTICQGAPDISHLFFADDSLIFCRSNTKEVSTIQNIIQTYQKASGQLVN 623

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
              KSE+ FS GVPN+T   ++  + +Q+  +   YLG+P ++GRSKK IF  + +++ KK
Sbjct: 624  LAKSEMVFSKGVPNNTKQDVSNILPMQIQNQFSKYLGMPIALGRSKKQIFNFIQEKIWKK 683

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            LK WK   LS AG+  LIK+VAQ+IPTY+MS F +P+  C Q++ +I NFWWG   D +K
Sbjct: 684  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLMPKGVCDQLEQMICNFWWGSSTDHRK 743

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHWI+W K+C  K  GG+GFR++ AFN+A+LAKQGWRL+   ++L+ + LKA+YYP GDF
Sbjct: 744  IHWIKWSKVCTQKKQGGMGFRNLRAFNEALLAKQGWRLITQPNSLVTQILKAKYYPKGDF 803

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            LTA+   N S+TWRSI+    +I+KGS W +G+G  I +W D W+  + N    +S+   
Sbjct: 804  LTATHKQNMSYTWRSILQASWVIKKGSYWTIGSGQDINIWEDNWIQQKGNSTGTSSKPNN 863

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
                KV EL+     EWN +++ Q+FN  +   I+ IP+ +    D L W  T  G YSV
Sbjct: 864  CGFTKVKELMDNNYNEWNASIINQVFNPYEAHMILQIPILDKTQPDTLTWDGTRDGTYSV 923

Query: 1443 KSGYQLALS-LKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRASLS 1619
            KSGY   +    N      +SS     +WK +WKLN+P K    +W+     +PV+ SL 
Sbjct: 924  KSGYHAIIDWANNSNSNNATSSNCSMEIWKVLWKLNVPPKHSHLIWRSLRNAIPVKGSLF 983

Query: 1620 RKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLN-NLMATTSATMADMLLEM 1796
            ++    DPLC RC D +ET++H   DC W+   W ASP+ LN NL   T     D +  M
Sbjct: 984  KRGIRCDPLCPRCLDHVETIQHVFMDCEWTKKVWFASPLTLNLNLNYLTE--FYDWITYM 1041

Query: 1797 SKIENKDIQCTFAMLLWTLWYARN 1868
                +K+       +++ +W ARN
Sbjct: 1042 INNTDKECMEKIVAIIYEIWNARN 1065


>ref|XP_024172304.1| uncharacterized protein LOC112178381 [Rosa chinensis]
          Length = 1602

 Score =  597 bits (1538), Expect = 0.0
 Identities = 314/735 (42%), Positives = 431/735 (58%), Gaps = 5/735 (0%)
 Frame = +3

Query: 3    SQSAFVPGRLITDNALLAFEIFHAMKYNKATRRGSFALKLDMSKAYDRVEWDFLHQVMLK 182
            +QSAFVPGR I+DN+LLAFE+ H +K       G  ALKLDMSKAYDRVEW+F+  VM  
Sbjct: 553  TQSAFVPGRQISDNSLLAFELSHFLKRRTGGSHGYGALKLDMSKAYDRVEWEFIEAVMRS 612

Query: 183  FGFPSHIVSLVMRCVSTVSYSILTNGIPGDVFTPTRGLRQGDPLSPYLFLFCAEAFSSLI 362
             GF    +  +M CV+TVSYS L NG P     PTRGLRQGD +SPYLFL CAE  S ++
Sbjct: 613  MGFDQIWIKWIMGCVTTVSYSFLLNGEPRGHLIPTRGLRQGDSISPYLFLLCAEGLSRML 672

Query: 363  RKSELQGNLHGIKICRRAPPISHLFFADDSIIFGRANNHEIEEIKRIIDTYGAASGQVVN 542
               E Q  LHGI I   AP I+HLFFADDS +F +A   E   +K I+  Y  ASGQ VN
Sbjct: 673  SYEEEQHRLHGIAIAMGAPSINHLFFADDSFVFMKAEREECARVKEILKWYEDASGQQVN 732

Query: 543  FDKSEISFSGGVPNSTADTLARAMGVQLVAKHHIYLGLPASIGRSKKAIFQTLIDRVSKK 722
            F KS+ISFS  V     + LA   GV+ V KH  YLGLP  +  SK   FQ ++++   K
Sbjct: 733  FQKSKISFSKNVDIGCQEELAEVFGVERVDKHDKYLGLPTEVSYSKTEAFQFIMEKTRNK 792

Query: 723  LKNWKSIMLSTAGKMILIKSVAQSIPTYIMSCFQIPEDTCHQIDSLIANFWWGQKADEKK 902
            +KNWK   LS AGK ++IKSV QS+PTY+MSCF++P+  C ++   +A FWWG     +K
Sbjct: 793  MKNWKDKTLSVAGKEVMIKSVVQSVPTYVMSCFELPKHLCQEMHRCMAEFWWGDSEKGRK 852

Query: 903  IHWIQWRKLCKPKINGGLGFRDISAFNKAMLAKQGWRLLLDEDTLLARTLKARYYPNGDF 1082
            IHW+ W K+C PK  GGLGFR++  FN+A+LAKQGWR+L   D+LL +TLKA+Y+PN DF
Sbjct: 853  IHWLAWDKMCVPKEKGGLGFRNMEYFNQALLAKQGWRILRHPDSLLGKTLKAKYFPNNDF 912

Query: 1083 LTASIGYNPSFTWRSIVAGREIIQKGSRWLVGNGNRIQVWRDPWLTTRQNFRPETSRGEW 1262
            + AS+    S+TWRS++ G+ +++KG R+ VG+G RI VW DPW+    +FRP ++  E 
Sbjct: 913  IHASVNQGDSYTWRSLMKGKVLLEKGLRFQVGSGTRISVWFDPWIPRPYSFRPYSTVMEG 972

Query: 1263 PLDMKVSELLIPGQQEWNDTLVAQIFNEDDVDKIISIPLRNGLCDDILAWHYTASGQYSV 1442
              D+ V++L+ P  ++W    + ++F  D+VD I  IPL     +D L WH+   G YSV
Sbjct: 973  LEDLTVADLIDPDSKDWMVDWLEELFFADEVDLIRKIPLSLRNPEDRLIWHFDKRGLYSV 1032

Query: 1443 KSGYQLA---LSLKNELQQLPSSSTDHTALWKWIWKLNIPAKVQIFLWKVAHGILPVRAS 1613
            KSGY +A    SL + +    S+S     LW+ +W   +  KV+ F+W++   I+P + +
Sbjct: 1033 KSGYHVARCVASLSSHVS--TSNSQGDKDLWRRVWHARVQPKVRNFVWRLVKNIVPTKVN 1090

Query: 1614 LSRKKCVSDPLCKRCGDTIETVEHALRDCHWSTFFWRASPVRLNNLMATTSATMADMLLE 1793
            L R+  + + +C  C    ET  H   +C+     W  S + L     TT+ ++ + +L+
Sbjct: 1091 LGRRVNLDERICPFCRCESETTLHVFMECNVIACMWLFSSLGLRAKNHTTN-SVKEWVLD 1149

Query: 1794 MSKIENKDIQCTFAMLLWTLWYARNMLVFQDKNIPHQECFMMAVKSLHDFQLAR-NKQPH 1970
            M  + NK     F MLLW +W  RN LV+             ++  L ++Q     K  H
Sbjct: 1150 MLDVLNKSQVDIFFMLLWAIWSERNKLVWNGGTFNPMHTVTWSMHLLSEYQRCHPEKSTH 1209

Query: 1971 PQIRDLCPFWQRPPEGIIKVNSDASVLPTIGT-GIGALLRDHEGRIIRVISRKFAQKYSV 2147
               R     W  PP G +K+N D +     G  GIG ++RD  G      SRK     S 
Sbjct: 1210 KSPRGAATKWMFPPRGRLKINVDGAYKSNEGCGGIGVVVRDEMGIFRGARSRKIPYMCSA 1269

Query: 2148 DVAEAIACREGLILA 2192
               EA ACR GL++A
Sbjct: 1270 FHGEAEACRAGLLMA 1284