BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038718
         (3699 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59248.1| polyprotein [Lychnis mottle virus]                    1823   0.0  
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1383   0.0  
gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]          1218   0.0  
gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]          1212   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...  1071   0.0  
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   923   0.0  
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   922   0.0  
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   920   0.0  
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   917   0.0  
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   916   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   598   0.0  
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   517   e-169
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   280   1e-82
gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot...   255   7e-75
gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot...   254   1e-74
gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot...   253   3e-74
gb|AND74087.1| coat protein, partial [Strawberry latent ringspot...   238   2e-68
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   236   2e-68
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   234   1e-67
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   232   5e-67

>gb|AKN59248.1| polyprotein [Lychnis mottle virus]
          Length = 994

 Score = 1823 bits (4723), Expect = 0.0
 Identities = 893/994 (89%), Positives = 930/994 (93%)
 Frame = -3

Query: 3385 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3206
            M+SFFGRRS QEMPNVPSYS KEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT
Sbjct: 1    MSSFFGRRSTQEMPNVPSYSPKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 60

Query: 3205 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 3026
            SQLKSL+ATT+TSN+L RL+EKPKA+VHVSEGVGRQVLCDDKL HQTTVVHTPEPL+   
Sbjct: 61   SQLKSLVATTATSNSLMRLREKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLYKKM 120

Query: 3025 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2846
                    KDTG EEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG
Sbjct: 121  KEKKLKSGKDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 180

Query: 2845 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2666
            IGVLPLYEAHSHALF PRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2665 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2486
            NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQ AEIAPLQPARLTR ASYMPIQRAGTKT
Sbjct: 241  NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 300

Query: 2485 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2306
            VLTFE+N+AQ+KEQQPVQ RA+FSFANISYGQQDRAALP   PQKCQFHNKVGCPCAQH 
Sbjct: 301  VLTFEDNVAQVKEQQPVQARAAFSFANISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHA 360

Query: 2305 GNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2126
            GN EASGNH+EELVPAS+GGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVG VVYTL
Sbjct: 361  GNAEASGNHHEELVPASEGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGTVVYTL 420

Query: 2125 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1946
            PI++ SL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 421  PIMRASLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 480

Query: 1945 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1766
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVVIIKDL NFDVSDYGME
Sbjct: 481  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDTDVNGAFKVVIIKDLVNFDVSDYGME 540

Query: 1765 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1586
            LS+YLEVE++GLG++  GGELTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 541  LSMYLEVEKVGLGDVTVGGELTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 600

Query: 1585 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1406
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGIAELAFAYDT +  +GD YRRFGSS
Sbjct: 601  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIAELAFAYDTYNNADGDTYRRFGSS 660

Query: 1405 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1226
            VVDLRAHRILRARVP              LFEVKPQTGFGDVLKLVILFTAPLHISD SK
Sbjct: 661  VVDLRAHRILRARVPLSGYGGYLAGGAGSLFEVKPQTGFGDVLKLVILFTAPLHISDTSK 720

Query: 1225 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVP 1046
            +G+VLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIK+GT++WEEPFI+RVP
Sbjct: 721  RGAVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKIGTVDWEEPFIARVP 780

Query: 1045 LGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 866
            +GLRQ+TFRLMTINKW+PSGFLYFPV+PSVHLPRTAGGFEASLEQQ PLMHRSQENCQWR
Sbjct: 781  MGLRQKTFRLMTINKWAPSGFLYFPVSPSVHLPRTAGGFEASLEQQRPLMHRSQENCQWR 840

Query: 865  GTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 686
            GTLRYHLTARLEGATE+ VLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF
Sbjct: 841  GTLRYHLTARLEGATEQLVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 900

Query: 685  SLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 506
            SLGQD+PFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 901  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 960

Query: 505  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            PDIEYRHPMGGFPLTIPDPSPAPKY+FENTF VG
Sbjct: 961  PDIEYRHPMGGFPLTIPDPSPAPKYFFENTFTVG 994


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
 gb|AAW63129.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
          Length = 989

 Score = 1383 bits (3579), Expect = 0.0
 Identities = 682/994 (68%), Positives = 786/994 (79%)
 Frame = -3

Query: 3385 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3206
            M SFF RRS  EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3205 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 3026
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 3025 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2846
                    KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2845 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2666
            IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2665 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2486
            NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2485 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2306
            VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP     KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2305 GNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2126
            G  EASG H EELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTL
Sbjct: 361  GEAEASGLH-EELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 2125 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1946
            P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1945 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1766
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1765 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1586
            LSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA         P  D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 1585 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1406
            Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 1405 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1226
            VVDLRAHR+LRARVP              LF V P T +G  L+ V+LFTAPLHISD +K
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 1225 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVP 1046
            KGSV+VRYLGLED +Y++P TS+GRLNP TTLV    ASG PV++VGT +W EP + R+P
Sbjct: 720  KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPPLFRLP 775

Query: 1045 LGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 866
            LGL QR FRL+TI+KW  SGFL+FP TPS H+P+  G FE  +EQ  PLMHRSQEN QW 
Sbjct: 776  LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835

Query: 865  GTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 686
            G+L Y+L+ R  GAT + VLP R +   A +L  I+  PCF++  TF  ++P+   R+T 
Sbjct: 836  GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895

Query: 685  SLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 506
             L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVE
Sbjct: 896  YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955

Query: 505  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 956  PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 789

 Score = 1218 bits (3152), Expect = 0.0
 Identities = 589/694 (84%), Positives = 626/694 (90%)
 Frame = -3

Query: 2485 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2306
            V  FE + AQ  E      RASFS AN SYGQQDR ALP L PQ+CQFHNKVGC C QHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSSANASYGQQDRVALPSLPPQECQFHNKVGCLCTQHT 155

Query: 2305 GNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2126
              +EASG+H+EELVPAS+GGTEGQFFSPQP+ HP DS+FVGSHPFSFPINSNVG VVYTL
Sbjct: 156  SGSEASGHHHEELVPASEGGTEGQFFSPQPIAHPQDSRFVGSHPFSFPINSNVGTVVYTL 215

Query: 2125 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1946
            PI++TSL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1945 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1766
            ALALQGTWFMPGRHDS SLTVQELATPAGFCDM  DVNGAFKVVIIKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGME 335

Query: 1765 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1586
            LSLYLEVE+IGLG++++   LTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 336  LSLYLEVEKIGLGSVVTNEALTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 395

Query: 1585 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1406
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGI ELAFAY+T D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYNTYDNVDGDIYRRFGSS 455

Query: 1405 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1226
            VVDLRAHRILRARVP              LFEVKPQ G GD LKLV+LFTAPLHISD SK
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKPQVGSGDTLKLVVLFTAPLHISDTSK 515

Query: 1225 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVP 1046
            KGSVLVRYLGLEDLDYLEPATSIGRLNP+TTLVPNVAASGGP++KVGT+EWEEPFIS+VP
Sbjct: 516  KGSVLVRYLGLEDLDYLEPATSIGRLNPETTLVPNVAASGGPIVKVGTVEWEEPFISKVP 575

Query: 1045 LGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 866
            LGLRQ+TFRLMTINKW+PSGFLYFPVTPSVHLPRTAG F A LEQQCPLMHRSQENCQWR
Sbjct: 576  LGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWR 635

Query: 865  GTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 686
            GTL+YHLTARLEGAT++ +LPHRSLTFSAVLLSKILPAPCF+DNSTFKPLLPLLSV+DTF
Sbjct: 636  GTLKYHLTARLEGATDQLILPHRSLTFSAVLLSKILPAPCFIDNSTFKPLLPLLSVKDTF 695

Query: 685  SLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 506
            SL QD+PFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 696  SLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 755

Query: 505  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            PDIEYRHPMGGFPLTIPDPSPAP+Y+FENTF+VG
Sbjct: 756  PDIEYRHPMGGFPLTIPDPSPAPRYFFENTFVVG 789



 Score =  153 bits (386), Expect = 4e-34
 Identities = 78/99 (78%), Positives = 89/99 (89%)
 Frame = -3

Query: 3379 SFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3200
            S FGRRS QEMPNVPSYS +EMEVLKAAITE GI+Y DVVRAAQTESGKMAILTA +T+Q
Sbjct: 2    SSFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVSTNQ 61

Query: 3199 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3083
            L+SL+ATT+TSN+L  L++KP+A VHVSEGV RQVLCDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVRRQVLCDD 100


>gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 789

 Score = 1212 bits (3137), Expect = 0.0
 Identities = 590/694 (85%), Positives = 628/694 (90%)
 Frame = -3

Query: 2485 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2306
            V  FE + AQ  E      RASFSFAN  YGQQDR ALP L PQ+CQFHNKV C CAQHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSFANAFYGQQDRVALPSLPPQECQFHNKVDCLCAQHT 155

Query: 2305 GNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2126
              +EASG+H+EELVPASDGGTEGQFFSPQPVVHPPDS+FVGSHPFSFP+NSNVG VVYTL
Sbjct: 156  SGSEASGHHHEELVPASDGGTEGQFFSPQPVVHPPDSRFVGSHPFSFPVNSNVGTVVYTL 215

Query: 2125 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1946
            PI+++SLKDTE+GRFY+GYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRSSLKDTEYGRFYRGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1945 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1766
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVV+IKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDMDVNGAFKVVVIKDLANFDVSDYGME 335

Query: 1765 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1586
            LS+YLEVE+IGLG+I     LTTFYPLRQVVLDYEL+TTT+KGKA         PAHD A
Sbjct: 336  LSMYLEVEKIGLGDITVDERLTTFYPLRQVVLDYELTTTTAKGKALVLPLNPLLPAHDGA 395

Query: 1585 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1406
            QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDT D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTYDNADGDTYRRFGSS 455

Query: 1405 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1226
            VVDLRAHRILRARVP              LFEVK QTGFGDVLKLVILFTAPLHISD SK
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKSQTGFGDVLKLVILFTAPLHISDTSK 515

Query: 1225 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVP 1046
            +GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP+VAASGGPVIKVGT EWEEPFI++VP
Sbjct: 516  RGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPSVAASGGPVIKVGTAEWEEPFIAKVP 575

Query: 1045 LGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 866
            +GLRQ+TFRLMTI+KWSPSGFLYFPV+PSVHLPRTAGGF+ASLEQQCPLMHRSQENCQWR
Sbjct: 576  MGLRQKTFRLMTISKWSPSGFLYFPVSPSVHLPRTAGGFKASLEQQCPLMHRSQENCQWR 635

Query: 865  GTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 686
            GTL+YHLTARLEGATE+ VLPHRSLTFSAVLLS+ILPAPCFVD STF+PLLPLLSV+DTF
Sbjct: 636  GTLKYHLTARLEGATEQLVLPHRSLTFSAVLLSRILPAPCFVDKSTFQPLLPLLSVKDTF 695

Query: 685  SLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 506
            SL QD+PFVEFTTPPGRW NTHFGATEQYTWRTCPVWVLLQFPPKTM QLHVRDVSLWVE
Sbjct: 696  SLSQDHPFVEFTTPPGRWINTHFGATEQYTWRTCPVWVLLQFPPKTMTQLHVRDVSLWVE 755

Query: 505  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P+IEYRHPMGGFPL IPDPSPAPKY+FENTF+VG
Sbjct: 756  PNIEYRHPMGGFPLIIPDPSPAPKYFFENTFVVG 789



 Score =  158 bits (399), Expect = 9e-36
 Identities = 79/99 (79%), Positives = 90/99 (90%)
 Frame = -3

Query: 3379 SFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3200
            SFFGRRS QEMPNVPSYS +EMEVLKAAITE GI+Y DVVRAAQTESGKMAILTA NT+Q
Sbjct: 2    SFFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVNTNQ 61

Query: 3199 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3083
            L+SL+ATT+TSN+L  L++KP+A VHVSEGVG+QV CDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVGQQVFCDD 100


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score = 1071 bits (2769), Expect = 0.0
 Identities = 543/832 (65%), Positives = 628/832 (75%)
 Frame = -3

Query: 2998 DTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLGIGVLPLYEA 2819
            DT EEEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVLGIGVLPLYEA
Sbjct: 11   DTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVLGIGVLPLYEA 68

Query: 2818 HSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRHNIADAHYLP 2639
            HSHALF PRL I      F +RLQLLTTFSD VLGGGSPAMSYSTISVVRHN+ DAH+LP
Sbjct: 69   HSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVRHNVRDAHFLP 127

Query: 2638 EPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKTVLTFENNMA 2459
            EPLPYSK KEK   GV+GLSNFQ AEIAPLQPARLTR ASYMPIQR+G KTVLTFE+N A
Sbjct: 128  EPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEKTVLTFEDNQA 186

Query: 2458 QIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHTGNTEASGNH 2279
             ++EQQP + RASFSF+ +SYGQQDRAALP     KC FHN+VGCPC QHTG  EASG H
Sbjct: 187  SLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQHTGEAEASGLH 246

Query: 2278 YEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2099
             EELVPAS GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTLP+I+TSLKD
Sbjct: 247  -EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 305

Query: 2098 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1919
            TEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 306  TEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 365

Query: 1918 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1739
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 366  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 425

Query: 1738 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1559
            IG+G         +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSS
Sbjct: 426  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 485

Query: 1558 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1379
            ILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 486  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRL 545

Query: 1378 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1199
            LRA+VP              LF V P T +G  L+ V+LFTAPLHISD +K GSV+VRYL
Sbjct: 546  LRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKTGSVMVRYL 605

Query: 1198 GLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFR 1019
            GLED +Y++P TS+GRLNP TTLV    ASG PV++VGT +W EP + R+PLGL Q+ FR
Sbjct: 606  GLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPLLFRLPLGLLQKRFR 661

Query: 1018 LMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTA 839
            L+TI+KW  SGFL+FP TPS H+P+ AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ 
Sbjct: 662  LLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSI 721

Query: 838  RLEGATERSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFV 659
            R  GAT + VLP R +   A +L  I+  PCF++  TF  ++P+   R+T  L       
Sbjct: 722  RYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIA 781

Query: 658  EFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 503
             + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP
Sbjct: 782  SYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  923 bits (2385), Expect = 0.0
 Identities = 457/720 (63%), Positives = 539/720 (74%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP   PQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2015
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 2014 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1835
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1834 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1664
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1663 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1484
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1483 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1304
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1303 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1124
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1123 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 944
               ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 943  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSK 764
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 763  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 584
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 583  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  922 bits (2383), Expect = 0.0
 Identities = 457/720 (63%), Positives = 538/720 (74%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP   PQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2015
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 2014 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1835
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1834 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1664
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1663 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1484
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1483 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1304
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1303 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1124
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1123 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 944
               ASG PV++VGT +W EP   R+PLGL Q+ FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 943  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSK 764
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 763  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 584
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 583  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  920 bits (2377), Expect = 0.0
 Identities = 454/720 (63%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2015
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 2014 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1835
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1834 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1664
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1663 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1484
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1483 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1304
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1303 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1124
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1123 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 944
               ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 943  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSK 764
              G FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 763  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 584
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 583  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P WVLLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  917 bits (2369), Expect = 0.0
 Identities = 452/720 (62%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2015
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 2014 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1835
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1834 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGELT---TFYPLRQVVLDY 1664
            NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1663 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1484
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1483 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1304
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1303 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1124
            P T +G  L+ V+LFTAPLHISD +KKGSV++R+LGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1123 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 944
               ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 943  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSK 764
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT R VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDN 592

Query: 763  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 584
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 583  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P WVLLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  916 bits (2368), Expect = 0.0
 Identities = 452/720 (62%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMP+QR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2015
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 2014 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1835
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1834 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGELT---TFYPLRQVVLDY 1664
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1663 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1484
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1483 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1304
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1303 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1124
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1123 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 944
               ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 943  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSK 764
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 763  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 584
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 583  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            P WVLLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  598 bits (1543), Expect = 0.0
 Identities = 294/366 (80%), Positives = 323/366 (88%)
 Frame = -3

Query: 3385 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3206
            M SFF RRS  EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3205 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 3026
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 3025 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2846
                    KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2845 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2666
            IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2665 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2486
            NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2485 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2306
            VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP     KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2305 GNTEAS 2288
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  517 bits (1331), Expect = e-169
 Identities = 257/384 (66%), Positives = 299/384 (77%)
 Frame = -3

Query: 2278 YEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2099
            +EELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTLP+I+TSLKD
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 2098 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1919
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1918 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1739
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1738 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1559
            IG+G         +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 1558 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1379
            ILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 1378 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1199
            LRARVP              LF V P T +G  L+ V+LFTAPLHISD +KKGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 1198 GLEDLDYLEPATSIGRLNPKTTLV 1127
            GLED +Y++P TS+GRLNP TTLV
Sbjct: 363  GLEDCEYIQPTTSLGRLNPATTLV 386


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  280 bits (715), Expect = 1e-82
 Identities = 127/235 (54%), Positives = 161/235 (68%)
 Frame = -3

Query: 1108 GGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 929
            G PV++VGT +W EP + R+PLGL QR FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 928  EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAP 749
            E  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 748  CFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 569
            CF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 568  LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 404
            LQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|ABC58720.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  255 bits (651), Expect = 7e-75
 Identities = 119/166 (71%), Positives = 137/166 (82%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP     KC FHN+VGCPC QHTG  EASG H EEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASGLH-EELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2057
            KFVGSHPFSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  254 bits (649), Expect = 1e-74
 Identities = 119/166 (71%), Positives = 137/166 (82%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP   P KC FHN+VGCPC QHTG TE+SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2057
            KFVGS+PFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|AAS10194.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  253 bits (646), Expect = 3e-74
 Identities = 120/166 (72%), Positives = 137/166 (82%)
 Frame = -3

Query: 2554 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2375
            PLQPARLTR ASYMPI+R+G KTVLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 2374 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDS 2195
            LP     KC FHN+VGCPC QHTG  EASG H EELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASGLH-EELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2194 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2057
            KFVGSHPFSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AND74087.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 200

 Score =  238 bits (608), Expect = 2e-68
 Identities = 121/187 (64%), Positives = 145/187 (77%)
 Frame = -3

Query: 1921 FMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVE 1742
            FMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+
Sbjct: 1    FMPGRHDSVTLTIDELATPSGYSIMNSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQ 60

Query: 1741 RIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSS 1562
             IG+G         +F PLRQVV+D++LSTTTSKGKA         P  D AQ+YPSCSS
Sbjct: 61   DIGMGIGPEIPLTDSFLPLRQVVVDFDLSTTTSKGKALVVPLNPLLPGFDGAQWYPSCSS 120

Query: 1561 SILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHR 1382
            SILENHRYWKGTL LEV+FNLPAM GG  E+ FA ++    E DAYR FGS+VVDLRAHR
Sbjct: 121  SILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHR 180

Query: 1381 ILRARVP 1361
            +LRA+VP
Sbjct: 181  LLRAKVP 187


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  236 bits (602), Expect = 2e-68
 Identities = 111/153 (72%), Positives = 125/153 (81%)
 Frame = -3

Query: 2533 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2354
            TR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP   PQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 2353 KCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2174
            KC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 2173 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2075
            FSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|AHB30926.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  234 bits (597), Expect = 1e-67
 Identities = 110/153 (71%), Positives = 126/153 (82%)
 Frame = -3

Query: 2533 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2354
            TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP     
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2353 KCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2174
            KC FHN+VGCPC QHTG  EASG H EELVPA+ GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASGLH-EELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 2173 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2075
            FSFPINSNVG  VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  232 bits (592), Expect = 5e-67
 Identities = 110/153 (71%), Positives = 125/153 (81%)
 Frame = -3

Query: 2533 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2354
            TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP     
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2353 KCQFHNKVGCPCAQHTGNTEASGNHYEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2174
            KC FHN+VGCPC QHTG  EASG H EELVPA+ GGTE  FFSP+ +  P  +K VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASGLH-EELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 2173 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2075
            FSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152