BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038693
         (3610 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59248.1| polyprotein [Lychnis mottle virus]                    1863   0.0  
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1404   0.0  
gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]          1229   0.0  
gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]          1224   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...  1093   0.0  
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   934   0.0  
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   933   0.0  
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   932   0.0  
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   929   0.0  
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   926   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   618   0.0  
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   521   e-171
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   280   6e-83
gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot...   264   3e-78
gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot...   263   5e-78
gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot...   261   4e-77
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   245   1e-71
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   243   5e-71
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   241   3e-70
gb|AND74087.1| coat protein, partial [Strawberry latent ringspot...   238   3e-68

>gb|AKN59248.1| polyprotein [Lychnis mottle virus]
          Length = 994

 Score = 1863 bits (4826), Expect = 0.0
 Identities = 906/994 (91%), Positives = 946/994 (95%)
 Frame = -3

Query: 3302 MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3123
            M+SFF +RSTQEMPNVPSYS KE+EVLKAAITECGINYADVVRAAQTESGKMAILTAANT
Sbjct: 1    MSSFFGRRSTQEMPNVPSYSPKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 60

Query: 3122 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFKKM 2943
            SQLKSL+ATT+TSN+L RL+EKPKA+VHVSEGVGRQVLCDDKLTHQTTVVHTPEPL+KKM
Sbjct: 61   SQLKSLVATTATSNSLMRLREKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLYKKM 120

Query: 2942 KEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2763
            KE+KL++GKDTG EEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG
Sbjct: 121  KEKKLKSGKDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 180

Query: 2762 IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDGVLGGGSPAMSYSTISVVRH 2583
            IGVLPLYEAHSHALFAPRLNIHYDDPNFV+RLQLLTTFSD VLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2582 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 2403
            NI DAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAE+APLQPARLTRSASY+PIQRAGTKT
Sbjct: 241  NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 300

Query: 2402 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 2223
            VLTFEDN+AQ+KEQQPVQARA+FSF NISYGQQDRAALPSPPPQKCQFHNKVGCPCAQH 
Sbjct: 301  VLTFEDNVAQVKEQQPVQARAAFSFANISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHA 360

Query: 2222 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 2043
            G+ EASGNHHEELVPAS+GGTEGQFFSPQPVVHPPDSKFVGSHPFSFP+NSNVGTVVYTL
Sbjct: 361  GNAEASGNHHEELVPASEGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGTVVYTL 420

Query: 2042 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1863
            PI++ SL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 421  PIMRASLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 480

Query: 1862 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1683
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM TDVNGAFKVVIIKDL NFDVSDYGME
Sbjct: 481  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDTDVNGAFKVVIIKDLVNFDVSDYGME 540

Query: 1682 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1503
            LS+YLEVEK+GLGDV  GGELTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 541  LSMYLEVEKVGLGDVTVGGELTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 600

Query: 1502 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 1323
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGIAE AFAYDT +  +GD YRRFGSS
Sbjct: 601  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIAELAFAYDTYNNADGDTYRRFGSS 660

Query: 1322 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTSR 1143
            VVDLRAHRILRARVP              LFEVKPQT FGDVLKLVILFTAPLHISDTS+
Sbjct: 661  VVDLRAHRILRARVPLSGYGGYLAGGAGSLFEVKPQTGFGDVLKLVILFTAPLHISDTSK 720

Query: 1142 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 963
            +G+VLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNV ASGGPVIK+GT++WEEPFI+RVP
Sbjct: 721  RGAVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKIGTVDWEEPFIARVP 780

Query: 962  LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 783
            +GLRQKTFRLMTINKW+PSGFLYFPV+PSVHLPRTAGGFEASLEQQ PLMHRSQENCQWR
Sbjct: 781  MGLRQKTFRLMTINKWAPSGFLYFPVSPSVHLPRTAGGFEASLEQQRPLMHRSQENCQWR 840

Query: 782  GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 603
            GTLRYHLTARLEGATEQ VLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF
Sbjct: 841  GTLRYHLTARLEGATEQLVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 900

Query: 602  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 423
            SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 901  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 960

Query: 422  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            PDIEYRHPMGGFPLTIPDPSPAPKY+FENTF VG
Sbjct: 961  PDIEYRHPMGGFPLTIPDPSPAPKYFFENTFTVG 994


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
 gb|AAW63129.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
          Length = 989

 Score = 1404 bits (3635), Expect = 0.0
 Identities = 687/994 (69%), Positives = 798/994 (80%)
 Frame = -3

Query: 3302 MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3123
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3122 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFKKM 2943
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++  M
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 2942 KEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2763
            + ++L+  KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2762 IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDGVLGGGSPAMSYSTISVVRH 2583
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSD VLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2582 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 2403
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2402 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 2223
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2222 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 2043
            G  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTL
Sbjct: 361  GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 2042 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1863
            P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1862 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1683
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1682 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1503
            LSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA         P  D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 1502 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 1323
            Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 1322 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTSR 1143
            VVDLRAHR+LRARVP              LF V P T +G  L+ V+LFTAPLHISDT++
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 1142 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 963
            KGSV+VRYLGLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+P
Sbjct: 720  KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPPLFRLP 775

Query: 962  LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 783
            LGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G FE  +EQ  PLMHRSQEN QW 
Sbjct: 776  LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835

Query: 782  GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 603
            G+L Y+L+ R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T 
Sbjct: 836  GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895

Query: 602  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 423
             L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVE
Sbjct: 896  YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955

Query: 422  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 956  PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 789

 Score = 1229 bits (3180), Expect = 0.0
 Identities = 595/694 (85%), Positives = 626/694 (90%)
 Frame = -3

Query: 2402 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 2223
            V  FE++ AQ  E     ARASFS  N SYGQQDR ALPS PPQ+CQFHNKVGC C QHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSSANASYGQQDRVALPSLPPQECQFHNKVGCLCTQHT 155

Query: 2222 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 2043
              +EASG+HHEELVPAS+GGTEGQFFSPQP+ HP DS+FVGSHPFSFP+NSNVGTVVYTL
Sbjct: 156  SGSEASGHHHEELVPASEGGTEGQFFSPQPIAHPQDSRFVGSHPFSFPINSNVGTVVYTL 215

Query: 2042 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1863
            PI++TSL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1862 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1683
            ALALQGTWFMPGRHDS SLTVQELATPAGFCDM TDVNGAFKVVIIKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGME 335

Query: 1682 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1503
            LSLYLEVEKIGLG V+    LTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 336  LSLYLEVEKIGLGSVVTNEALTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 395

Query: 1502 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 1323
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGI E AFAY+T D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYNTYDNVDGDIYRRFGSS 455

Query: 1322 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTSR 1143
            VVDLRAHRILRARVP              LFEVKPQ   GD LKLV+LFTAPLHISDTS+
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKPQVGSGDTLKLVVLFTAPLHISDTSK 515

Query: 1142 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 963
            KGSVLVRYLGLEDLDYLEPATSIGRLNP+TTLVPNV ASGGP++KVGT+EWEEPFIS+VP
Sbjct: 516  KGSVLVRYLGLEDLDYLEPATSIGRLNPETTLVPNVAASGGPIVKVGTVEWEEPFISKVP 575

Query: 962  LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 783
            LGLRQKTFRLMTINKW+PSGFLYFPVTPSVHLPRTAG F A LEQQCPLMHRSQENCQWR
Sbjct: 576  LGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWR 635

Query: 782  GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 603
            GTL+YHLTARLEGAT+Q +LPHRSLTFSAVLLSKILPAPCF+DNSTFKPLLPLLSV+DTF
Sbjct: 636  GTLKYHLTARLEGATDQLILPHRSLTFSAVLLSKILPAPCFIDNSTFKPLLPLLSVKDTF 695

Query: 602  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 423
            SL QDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 696  SLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 755

Query: 422  PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            PDIEYRHPMGGFPLTIPDPSPAP+Y+FENTFVVG
Sbjct: 756  PDIEYRHPMGGFPLTIPDPSPAPRYFFENTFVVG 789



 Score =  150 bits (378), Expect = 3e-33
 Identities = 76/99 (76%), Positives = 89/99 (89%)
 Frame = -3

Query: 3296 SFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3117
            S F +RSTQEMPNVPSYS +E+EVLKAAITE GI+Y DVVRAAQTESGKMAILTA +T+Q
Sbjct: 2    SSFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVSTNQ 61

Query: 3116 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3000
            L+SL+ATT+TSN+L  L++KP+A VHVSEGV RQVLCDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVRRQVLCDD 100


>gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 789

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 594/693 (85%), Positives = 629/693 (90%), Gaps = 2/693 (0%)
 Frame = -3

Query: 2393 FEDNIAQIKEQQPV--QARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHTG 2220
            F D++   +E Q    +ARASFSF N  YGQQDR ALPS PPQ+CQFHNKV C CAQHT 
Sbjct: 97   FCDDVPAFEEDQAQSGEARASFSFANAFYGQQDRVALPSLPPQECQFHNKVDCLCAQHTS 156

Query: 2219 STEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLP 2040
             +EASG+HHEELVPASDGGTEGQFFSPQPVVHPPDS+FVGSHPFSFPVNSNVGTVVYTLP
Sbjct: 157  GSEASGHHHEELVPASDGGTEGQFFSPQPVVHPPDSRFVGSHPFSFPVNSNVGTVVYTLP 216

Query: 2039 IIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERA 1860
            I+++SLKDTE+GRFY+GYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRERA
Sbjct: 217  IMRSSLKDTEYGRFYRGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRERA 276

Query: 1859 LALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMEL 1680
            LALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVV+IKDLANFDVSDYGMEL
Sbjct: 277  LALQGTWFMPGRHDSTSLTVQELATPAGFCDMDMDVNGAFKVVVIKDLANFDVSDYGMEL 336

Query: 1679 SLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQ 1500
            S+YLEVEKIGLGD+     LTTFYPLRQVVLDYEL+TTT+KGKA         PAHD AQ
Sbjct: 337  SMYLEVEKIGLGDITVDERLTTFYPLRQVVLDYELTTTTAKGKALVLPLNPLLPAHDGAQ 396

Query: 1499 FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSV 1320
            FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAE AFAYDT D  +GD YRRFGSSV
Sbjct: 397  FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTYDNADGDTYRRFGSSV 456

Query: 1319 VDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTSRK 1140
            VDLRAHRILRARVP              LFEVK QT FGDVLKLVILFTAPLHISDTS++
Sbjct: 457  VDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKSQTGFGDVLKLVILFTAPLHISDTSKR 516

Query: 1139 GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVPL 960
            GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP+V ASGGPVIKVGT EWEEPFI++VP+
Sbjct: 517  GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPSVAASGGPVIKVGTAEWEEPFIAKVPM 576

Query: 959  GLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWRG 780
            GLRQKTFRLMTI+KWSPSGFLYFPV+PSVHLPRTAGGF+ASLEQQCPLMHRSQENCQWRG
Sbjct: 577  GLRQKTFRLMTISKWSPSGFLYFPVSPSVHLPRTAGGFKASLEQQCPLMHRSQENCQWRG 636

Query: 779  TLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFS 600
            TL+YHLTARLEGATEQ VLPHRSLTFSAVLLS+ILPAPCFVD STF+PLLPLLSV+DTFS
Sbjct: 637  TLKYHLTARLEGATEQLVLPHRSLTFSAVLLSRILPAPCFVDKSTFQPLLPLLSVKDTFS 696

Query: 599  LGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 420
            L QDHPFVEFTTPPGRW NTHFGATEQYTWRTCPVWVLLQFPPKTM QLHVRDVSLWVEP
Sbjct: 697  LSQDHPFVEFTTPPGRWINTHFGATEQYTWRTCPVWVLLQFPPKTMTQLHVRDVSLWVEP 756

Query: 419  DIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            +IEYRHPMGGFPL IPDPSPAPKY+FENTFVVG
Sbjct: 757  NIEYRHPMGGFPLIIPDPSPAPKYFFENTFVVG 789



 Score =  155 bits (391), Expect = 8e-35
 Identities = 77/99 (77%), Positives = 90/99 (90%)
 Frame = -3

Query: 3296 SFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3117
            SFF +RSTQEMPNVPSYS +E+EVLKAAITE GI+Y DVVRAAQTESGKMAILTA NT+Q
Sbjct: 2    SFFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVNTNQ 61

Query: 3116 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3000
            L+SL+ATT+TSN+L  L++KP+A VHVSEGVG+QV CDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVGQQVFCDD 100


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score = 1093 bits (2827), Expect = 0.0
 Identities = 554/842 (65%), Positives = 642/842 (76%)
 Frame = -3

Query: 2945 MKEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVL 2766
            M+ ++L+  KDT EEEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVL
Sbjct: 1    MESKRLKKTKDTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVL 58

Query: 2765 GIGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDGVLGGGSPAMSYSTISVVR 2586
            GIGVLPLYEAHSHALFAPRL I      F DRLQLLTTFSD VLGGGSPAMSYSTISVVR
Sbjct: 59   GIGVLPLYEAHSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVR 117

Query: 2585 HNIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTK 2406
            HN+ DAH+LPEPLPYSK KEK   GV+GLSNFQAAE+APLQPARLTRSASY+PIQR+G K
Sbjct: 118  HNVRDAHFLPEPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEK 176

Query: 2405 TVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQH 2226
            TVLTFEDN A ++EQQP +ARASFSF+ +SYGQQDRAALPS P  KC FHN+VGCPC QH
Sbjct: 177  TVLTFEDNQASLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQH 236

Query: 2225 TGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYT 2046
            TG  EASG H EELVPAS GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYT
Sbjct: 237  TGEAEASGLH-EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYT 295

Query: 2045 LPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRE 1866
            LP+I+TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRE
Sbjct: 296  LPLIRTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRE 355

Query: 1865 RALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGM 1686
            RAL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GM
Sbjct: 356  RALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGM 415

Query: 1685 ELSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDE 1506
            ELSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA         P  D 
Sbjct: 416  ELSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDG 475

Query: 1505 AQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGS 1326
            AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS
Sbjct: 476  AQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGS 535

Query: 1325 SVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTS 1146
            +VVDLRAHR+LRA+VP              LF V P T +G  L+ V+LFTAPLHISDT+
Sbjct: 536  TVVDLRAHRLLRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTT 595

Query: 1145 RKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRV 966
            + GSV+VRYLGLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+
Sbjct: 596  KTGSVMVRYLGLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPLLFRL 651

Query: 965  PLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQW 786
            PLGL QK FRL+TI+KW  SGFL+FP TPS H+P+ AG FE  +EQ  PLMHRSQEN QW
Sbjct: 652  PLGLLQKRFRLLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQW 711

Query: 785  RGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDT 606
             G+L Y+L+ R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T
Sbjct: 712  SGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRET 771

Query: 605  FSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWV 426
              L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWV
Sbjct: 772  IYLPTTDSIASYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWV 831

Query: 425  EP 420
            EP
Sbjct: 832  EP 833


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  934 bits (2413), Expect = 0.0
 Identities = 462/720 (64%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1932
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1931 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1752
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1751 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 1581
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 1580 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1401
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1400 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1221
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1220 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1041
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 1040 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 861
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 860  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 681
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 680  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 501
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 500  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  933 bits (2411), Expect = 0.0
 Identities = 462/720 (64%), Positives = 542/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1932
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1931 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1752
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1751 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 1581
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 1580 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1401
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1400 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1221
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1220 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1041
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 1040 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 861
              VASG PV++VGT +W EP   R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 860  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 681
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 680  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 501
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 500  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  932 bits (2410), Expect = 0.0
 Identities = 460/720 (63%), Positives = 545/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1932
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 1931 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1752
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1751 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 1581
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 1580 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1401
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1400 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1221
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1220 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1041
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 1040 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 861
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 860  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 681
              G FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 680  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 501
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 500  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P WVLLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  929 bits (2401), Expect = 0.0
 Identities = 458/720 (63%), Positives = 545/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+P+QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1932
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1931 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1752
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1751 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 1581
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 1580 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1401
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1400 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1221
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1220 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1041
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1040 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 861
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 860  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 681
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 680  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 501
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 500  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P WVLLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  926 bits (2394), Expect = 0.0
 Identities = 456/720 (63%), Positives = 545/720 (75%), Gaps = 3/720 (0%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1932
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1931 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1752
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1751 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 1581
            NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 1580 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1401
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1400 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1221
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1220 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1041
            P T +G  L+ V+LFTAPLHISDT++KGSV++R+LGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 1040 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 861
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 860  TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 681
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDN 592

Query: 680  ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 501
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 500  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            P WVLLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  618 bits (1594), Expect = 0.0
 Identities = 299/366 (81%), Positives = 334/366 (91%)
 Frame = -3

Query: 3302 MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3123
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3122 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFKKM 2943
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++  M
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 2942 KEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2763
            + ++L+  KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2762 IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDGVLGGGSPAMSYSTISVVRH 2583
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSD VLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2582 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 2403
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2402 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 2223
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2222 GSTEAS 2205
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  521 bits (1341), Expect = e-171
 Identities = 258/384 (67%), Positives = 300/384 (78%)
 Frame = -3

Query: 2195 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKD 2016
            HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKD
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 2015 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1836
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1835 MPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMELSLYLEVEK 1656
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1655 IGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1476
            IG+G         +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 1475 ILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1296
            ILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 1295 LRARVPXXXXXXXXXXXXXXLFEVKPQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYL 1116
            LRARVP              LF V P T +G  L+ V+LFTAPLHISDT++KGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 1115 GLEDLDYLEPATSIGRLNPKTTLV 1044
            GLED +Y++P TS+GRLNP TTLV
Sbjct: 363  GLEDCEYIQPTTSLGRLNPATTLV 386


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  280 bits (716), Expect = 6e-83
 Identities = 127/235 (54%), Positives = 161/235 (68%)
 Frame = -3

Query: 1025 GGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 846
            G PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 845  EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAP 666
            E  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 665  CFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 486
            CF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 485  LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 321
            LQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|ABC58720.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  264 bits (675), Expect = 3e-78
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS P  KC FHN+VGCPC QHTG  EASG  HEEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1974
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  263 bits (673), Expect = 5e-78
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LPS PP KC FHN+VGCPC QHTG TE+SG  HEELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1974
            KFVGS+PFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|AAS10194.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  261 bits (667), Expect = 4e-77
 Identities = 123/166 (74%), Positives = 141/166 (84%)
 Frame = -3

Query: 2471 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 2292
            PLQPARLTRSASY+PI+R+G KTVLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 2291 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2112
            LP  P  KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2111 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1974
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  245 bits (626), Expect = 1e-71
 Identities = 115/153 (75%), Positives = 130/153 (84%)
 Frame = -3

Query: 2450 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 2271
            TRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PPQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 2270 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2091
            KC FHN+VGCPC QHTG  E SG  HEELVPAS GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 2090 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1992
            FSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
 gb|AHB30926.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  243 bits (621), Expect = 5e-71
 Identities = 114/153 (74%), Positives = 131/153 (85%)
 Frame = -3

Query: 2450 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 2271
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2270 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2091
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 2090 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1992
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  241 bits (616), Expect = 3e-70
 Identities = 114/153 (74%), Positives = 130/153 (84%)
 Frame = -3

Query: 2450 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 2271
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2270 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2091
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +K VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 2090 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1992
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152


>gb|AND74087.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 200

 Score =  238 bits (606), Expect = 3e-68
 Identities = 123/190 (64%), Positives = 147/190 (77%), Gaps = 3/190 (1%)
 Frame = -3

Query: 1838 FMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMELSLYLEVE 1659
            FMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+
Sbjct: 1    FMPGRHDSVTLTIDELATPSGYSIMNSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQ 60

Query: 1658 KIGLGDVIGGGELT---TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPS 1488
             IG+G    G E+    +F PLRQVV+D++LSTTTSKGKA         P  D AQ+YPS
Sbjct: 61   DIGMGI---GPEIPLTDSFLPLRQVVVDFDLSTTTSKGKALVVPLNPLLPGFDGAQWYPS 117

Query: 1487 CSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLR 1308
            CSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLR
Sbjct: 118  CSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLR 177

Query: 1307 AHRILRARVP 1278
            AHR+LRA+VP
Sbjct: 178  AHRLLRAKVP 187