BLASTX nr result
ID: Rehmannia29_contig00038650
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00038650
(7276 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 4078 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 4018 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 3994 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3652 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1226 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 976 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 941 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 500 e-158
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 353 3e-94
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 321 2e-89
ref|YP_009220374.1| polyprotein [Currant latent virus] >gi|96655... 335 2e-88
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 306 8e-85
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 303 7e-84
gb|ANC51274.1| polyprotein [Cherry rasp leaf virus] 317 5e-83
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 1e-81
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 312 1e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] >gi|820027... 307 5e-80
ref|YP_007697622.1| polyprotein [Arracacha virus B] >gi|38572452... 303 8e-79
gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus] 233 1e-70
ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl viru... 273 1e-69
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 4078 bits (10575), Expect = 0.0
Identities = 1993/2209 (90%), Positives = 2069/2209 (93%)
Frame = +1
Query: 247 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 426
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 427 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 606
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120
Query: 607 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 786
Y + I KA GLDVEEY K+QAP+AG+RNFL+ + DAE LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180
Query: 787 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 966
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD VM QA
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240
Query: 967 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1146
LSDEW EWIYFEEDYEE L E ++FFPF LE+ K+ PLSPT VLDSADSYLPG
Sbjct: 241 LSDEWSEWIYFEEDYEEALSEEFEIFFPF---LESAKVCEPA-PLSPTSVLDSADSYLPG 296
Query: 1147 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1326
TKWVYDSDEED+IPVAPIDRFHNKKFD+DF DYCDTEY +QP + YTETWF+DGCLP P
Sbjct: 297 TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356
Query: 1327 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1506
WF RG LDEAIICEKLPL+GKSPLEL+IQYQV+PTGDLL D+QRALFAYYEKEA PNKK
Sbjct: 357 WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416
Query: 1507 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1686
+FDLNGVPT+LVFEDWR DLRYCLYAP V+GNQLKHLMAIV+APLPGWLLDFPKR+KSG
Sbjct: 417 HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476
Query: 1687 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1866
LQASGWNPLRYF KQ TLGFLDGV++KLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477 LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536
Query: 1867 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2046
+SKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537 ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596
Query: 2047 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSI 2226
LGQAHMGALKRSTKIWELVQKWDQPSEV+R KEEW RELMASPHSI
Sbjct: 597 LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656
Query: 2227 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2406
PECVIDLTHMKDLLG +CS+FKEAFEVG VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657 PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716
Query: 2407 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2586
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776
Query: 2587 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2766
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836
Query: 2767 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2946
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896
Query: 2947 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3126
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 897 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 956
Query: 3127 FVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3306
FVFITANQAGLTP AVVHC+KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 957 FVFITANQAGLTPGAVVHCRKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1016
Query: 3307 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3486
RFQVMNYEQFLQYTVNQS+QHFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGIKVPF
Sbjct: 1017 RFQVMNYEQFLQYTVNQSRQHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPF 1076
Query: 3487 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3666
TMLKSLSGDQLTYYSEE+MME+TETLTPEDADIIRSRLDPG+ITQQLQMLLPKAAYVNLK
Sbjct: 1077 TMLKSLSGDQLTYYSEEKMMEITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLK 1136
Query: 3667 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3846
NHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLEQHKRGF +AKELAQGACKA
Sbjct: 1137 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKA 1196
Query: 3847 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 4026
INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYT PCLLTFATLGTMKASGSLSSSQDQ
Sbjct: 1197 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQET 1256
Query: 4027 XXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4206
YLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1257 RRTASGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 1316
Query: 4207 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4386
TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV
Sbjct: 1317 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 1376
Query: 4387 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4566
LK+EKWLLSSHDPFMAGSGWFMEMLFR +GVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1377 LKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1436
Query: 4567 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4746
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD II
Sbjct: 1437 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAII 1496
Query: 4747 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 4926
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS AP
Sbjct: 1497 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAP 1556
Query: 4927 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5106
RQATTSEI+KSSISADLEALTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD
Sbjct: 1557 RQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 1616
Query: 5107 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5286
MSPVTEEE+KIWDLTWDSIFDLPGGIE+KCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP
Sbjct: 1617 MSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1676
Query: 5287 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5466
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL
Sbjct: 1677 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1736
Query: 5467 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5646
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1737 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1796
Query: 5647 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 5826
KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG+RRLHLMLAATTRLGVA
Sbjct: 1797 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVA 1856
Query: 5827 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 6006
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLV
Sbjct: 1857 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1916
Query: 6007 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6186
SVKE+AAS+FNLKKLS+FLADFGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1917 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1976
Query: 6187 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6366
LAP HWVRETNMSNA ATQNNVEGFLRELFHYGDK LYCKWRRDLIDLCSK
Sbjct: 1977 LAPLSWLSLSESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSK 2036
Query: 6367 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 6546
NRVPHPTTYSFEELERSWLSGKSVASIFEKEE E++VIRD ASDVAPGVHIVPV+QCLKW
Sbjct: 2037 NRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKW 2096
Query: 6547 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 6726
GEVPNVVWCGPNCPNQLRNA++CFQIQAPQGS+YPLRNT RNLLKKVHQRGDEVYFTG
Sbjct: 2097 NAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTG 2156
Query: 6727 ALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 6873
+LNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2157 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 4018 bits (10420), Expect = 0.0
Identities = 1952/2209 (88%), Positives = 2053/2209 (92%)
Frame = +1
Query: 247 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 426
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 427 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 606
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120
Query: 607 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 786
Y + I KA GLDVEEY K+QAPRAG RNFL+ + D E LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180
Query: 787 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 966
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD +VM +A
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240
Query: 967 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1146
LSDEW EW YFEEDYEE L EG ++FFP +ET K + + P SPTCVLDSADSYL G
Sbjct: 241 LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300
Query: 1147 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1326
TKWVYDSDEE+Y+PVAP+D+FHNKKF++DF+DYCD EY +QPVGS TETWF+DGCLP P
Sbjct: 301 TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360
Query: 1327 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1506
WF RG +DEA+ICEKLPL+GKSPLEL+IQYQV PTGDLL DIQRALFAYYE+EALPNKK
Sbjct: 361 WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420
Query: 1507 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1686
+FDLNGVPTLLVFEDWRADLRYCL+AP + GNQLKHLM +++ PLPGWLLDFPKR++SG+
Sbjct: 421 FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480
Query: 1687 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1866
LQASGWNPLRYF KQ TLGFLDGVV+KLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481 LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540
Query: 1867 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2046
+SKRGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541 ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600
Query: 2047 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSI 2226
LG AHMGALKRSTKIWELVQKWD+PSEVK KEEWLRELMASPHS+
Sbjct: 601 LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660
Query: 2227 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2406
PECVIDLTHMKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661 PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720
Query: 2407 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2586
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780
Query: 2587 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2766
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840
Query: 2767 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2946
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900
Query: 2947 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3126
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 901 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 960
Query: 3127 FVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3306
FVFITANQAGLTP AVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 961 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1020
Query: 3307 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3486
RFQVMNYEQFLQY VNQSKQHFSEQVDLRDAPHTQ+F+AADQIAAEAEEGF+ AGIK+PF
Sbjct: 1021 RFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPF 1080
Query: 3487 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3666
MLKSLSGDQLTYYSEE+MMEVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLK
Sbjct: 1081 CMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLK 1140
Query: 3667 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3846
NHF LGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLE HKRGF +AKELAQGA KA
Sbjct: 1141 NHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKA 1200
Query: 3847 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 4026
++DAPFLVKLLLGFGALYFVG PLLSWLKSLYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1201 VSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQET 1260
Query: 4027 XXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4206
YLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1261 RRTASGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGG 1320
Query: 4207 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4386
TRVLMVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPV
Sbjct: 1321 TRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPV 1380
Query: 4387 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4566
LKLEKWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1381 LKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1440
Query: 4567 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4746
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTII
Sbjct: 1441 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTII 1500
Query: 4747 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 4926
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS AP
Sbjct: 1501 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAP 1560
Query: 4927 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5106
RQAT+SEIKKSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAAD
Sbjct: 1561 RQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAAD 1620
Query: 5107 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5286
MSPVTE+EEKIW+LTWDSIFDLPGGI KCHLLSEDENLNGVNGDNEYRGMVV+TSEGWP
Sbjct: 1621 MSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWP 1680
Query: 5287 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5466
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERL
Sbjct: 1681 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERL 1740
Query: 5467 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5646
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1741 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1800
Query: 5647 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 5826
KRMHAKGTNWFNGD SRFDGVTPRCLL+EI+RRITLLY DDQGDRRLHLMLAATTRLGVA
Sbjct: 1801 KRMHAKGTNWFNGDSSRFDGVTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVA 1860
Query: 5827 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 6006
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV
Sbjct: 1861 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1920
Query: 6007 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6186
SVK+IAA++FNLKKLSSFLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1921 SVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1980
Query: 6187 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6366
LAP HWVRETNMSN+ ATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK
Sbjct: 1981 LAPLSWLSLSESLHWVRETNMSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 2040
Query: 6367 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 6546
NRVPHPTTYSFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+AP VHI+PVQQCLKW
Sbjct: 2041 NRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKW 2100
Query: 6547 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 6726
++ EVPNVVWCGPNCPNQL+NA+TCFQIQAPQGS+YPLR+T+RN LKKVHQRGD+VYFTG
Sbjct: 2101 RSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTG 2160
Query: 6727 ALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 6873
A+NQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2161 AINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 3994 bits (10358), Expect = 0.0
Identities = 1950/2260 (86%), Positives = 2053/2260 (90%), Gaps = 51/2260 (2%)
Frame = +1
Query: 247 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 426
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 427 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 606
+NLQVERDRC MRE+EE ELL+AD+E+EF+SEL+ FV+P F G+SFGT++ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120
Query: 607 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 786
Y + IFKA G DVEEYTK+QAP+AG RNFL+ DR DAE LT VVRTAI NPGFGNPSF
Sbjct: 121 YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180
Query: 787 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGF------------------------- 891
DYTGLGGDEF+YRF KDGLFADD LGLARFVSAGF
Sbjct: 181 DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240
Query: 892 --------------------------TESLGPENRSVAPLTSGDMDVMTQALSDEWCEWI 993
TE VAPLT GD+DVMTQALSDEW W
Sbjct: 241 TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300
Query: 994 YFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPGTKWVYDSDE 1173
+ EEDYEE L+E ++FP +++ + +E LSPTCVLDSADSY PGTKWVYDSDE
Sbjct: 301 HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360
Query: 1174 EDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEPWFMRGTPLD 1353
EDY+P AP+DRFHNKKF++DF+DYCD E +QP + YTETWF+DGCLP WF RGTP+D
Sbjct: 361 EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420
Query: 1354 EAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKKYFDLNGVPT 1533
EA++CEKLPL+GKSPLELMIQYQV+PTGDLL D+QRALFAYYEKEALPNKK+FDLNGVPT
Sbjct: 421 EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480
Query: 1534 LLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGVLQASGWNPL 1713
LLVFEDWRADLRYCL+AP ++GNQLKHLM +++APLPGWLLDFPKR+KSG+LQASGWNPL
Sbjct: 481 LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540
Query: 1714 RYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMVSKRGEILK 1893
RYF +QTTLGFLDGVV+KLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEM+SKRGEIL+
Sbjct: 541 RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600
Query: 1894 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 2073
ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601 ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660
Query: 2074 KRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSIPECVIDLTH 2253
KRSTKIWELVQKWD+PSEVK KEEWLRELMASPHS+PECVIDLTH
Sbjct: 661 KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720
Query: 2254 MKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 2433
MKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721 MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780
Query: 2434 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 2613
ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840
Query: 2614 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 2793
TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900
Query: 2794 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 2973
LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960
Query: 2974 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQA 3153
NQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSDFVFITANQA
Sbjct: 961 NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 1020
Query: 3154 GLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3333
GLTP+AVVHCK+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ
Sbjct: 1021 GLTPSAVVHCKRAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 1080
Query: 3334 FLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGD 3513
FLQY VNQS+QHFSEQVDLRDAPHTQ+FTAADQIAAEAEEG R AGI++PF MLKSLSGD
Sbjct: 1081 FLQYAVNQSQQHFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGD 1140
Query: 3514 QLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDP 3693
QLTYYSEE MMEVTETL PE+ADI+RSRLDPG+ITQQLQ LLPKAAYVNLKNHFGLGTDP
Sbjct: 1141 QLTYYSEEEMMEVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDP 1200
Query: 3694 FEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVK 3873
FEQPNPYFNCSQRAKVIGRFL+PKVTEEQLEQ KRGF +AKELAQGACKAINDAPFLVK
Sbjct: 1201 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVK 1260
Query: 3874 LLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXX 4053
LLLGFGALYFVG PLLSWL++LYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1261 LLLGFGALYFVGAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRER 1320
Query: 4054 XXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 4233
YLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV
Sbjct: 1321 RRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 1380
Query: 4234 WLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLS 4413
WLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLKLEKWLLS
Sbjct: 1381 WLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLS 1440
Query: 4414 SHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 4593
SHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1441 SHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 1500
Query: 4594 DDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITK 4773
DDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLITK
Sbjct: 1501 DDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITK 1560
Query: 4774 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIK 4953
EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS APRQAT+SEIK
Sbjct: 1561 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIK 1620
Query: 4954 KSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEE 5133
KSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEEE
Sbjct: 1621 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEE 1680
Query: 5134 KIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 5313
K+W+LTWDSIFDLPGGI KCHLL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE
Sbjct: 1681 KVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1740
Query: 5314 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 5493
AGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDV
Sbjct: 1741 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDV 1800
Query: 5494 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5673
KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN
Sbjct: 1801 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1860
Query: 5674 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSG 5853
WFNGDYSRFDGVTPRCLL+EI+RRIT LYND+QGDRRLHLMLAATTRLGVAGIGLYRVSG
Sbjct: 1861 WFNGDYSRFDGVTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSG 1920
Query: 5854 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASE 6033
GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVK+IAA++
Sbjct: 1921 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAAD 1980
Query: 6034 FNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXX 6213
FNLKKLS FLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP
Sbjct: 1981 FNLKKLSLFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2040
Query: 6214 XXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTY 6393
HWVRETNMSNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCS+NRVPHPTTY
Sbjct: 2041 SESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTY 2100
Query: 6394 SFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVV 6573
SFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+APGVHIVPVQQCLKWK E+PNVV
Sbjct: 2101 SFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVV 2160
Query: 6574 WCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHW 6753
WCGPNCPNQLRNA+TCFQIQAPQGS+YPLRNTVR+ LKKVHQRGD+VYFTGALNQSLVHW
Sbjct: 2161 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHW 2220
Query: 6754 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 6873
VAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2221 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gb|AAW63128.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
Length = 2227
Score = 3652 bits (9471), Expect = 0.0
Identities = 1786/2229 (80%), Positives = 1944/2229 (87%), Gaps = 20/2229 (0%)
Frame = +1
Query: 247 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 426
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 427 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 606
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 607 YVHQTIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 780
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 781 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 960
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 961 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 1089
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1090 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1269
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1270 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1449
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1450 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1629
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1630 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1809
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1810 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1989
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1990 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 2169
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2170 XXXXKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 2346
KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2347 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 2526
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 2527 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 2706
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 2707 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 2886
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 2887 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 3066
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 3067 XXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGR 3246
EAKGNTCCTSDFVFITANQAGLTP+AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 3247 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAA 3426
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AA
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3427 DQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDP 3606
DQIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3607 GIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLE 3786
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3787 QHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTF 3966
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3967 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHL 4146
A LGTM+ASGSLSSSQDQ YLLEASGPGA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 4147 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 4326
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 4327 LGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEAD 4506
+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 4507 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 4686
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 4687 KIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 4866
KIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 4867 EFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLH 5046
EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 5047 DRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLN 5226
DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 5227 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 5406
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 5407 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 5586
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 5587 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 5766
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 5767 DQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 5946
+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 5947 SSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEF 6126
SSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 6127 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFH 6306
NPPEKCDFLKRCFKARGDRYLAP HWVRETNM+NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 6307 YGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRD 6486
YGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E+VV++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 6487 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRN 6666
ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGSRYPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 6667 TVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 6846
TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 6847 ESTVAAKGW 6873
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1226 bits (3171), Expect = 0.0
Identities = 591/675 (87%), Positives = 623/675 (92%)
Frame = +1
Query: 4849 GCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHN 5028
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 5029 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLS 5208
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 5209 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 5388
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 5389 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 5568
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 5569 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 5748
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 5749 TLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 5928
T LY D+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 5929 EHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSK 6108
EHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+K
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 6109 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGF 6288
EILPEFNPPEKCDFLKRCFKARGDRYLAP HWVRETNM+NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 6289 LRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESE 6468
LRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 6469 VVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGS 6648
+VV++D ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 6649 RYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 6828
RYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 6829 NDAGLLESTVAAKGW 6873
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 976 bits (2524), Expect = 0.0
Identities = 476/548 (86%), Positives = 505/548 (92%)
Frame = +1
Query: 2350 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 2529
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 2530 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 2709
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 2710 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 2889
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 2890 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 3069
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 3070 XXXXXXXXEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRY 3249
EAKGNTCCTSDFVFITANQAGLTP+AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 3250 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAAD 3429
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AAD
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3430 QIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPG 3609
QIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3610 IITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQ 3789
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3790 HKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFA 3969
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3970 TLGTMKAS 3993
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 941 bits (2432), Expect = 0.0
Identities = 466/721 (64%), Positives = 548/721 (76%), Gaps = 20/721 (2%)
Frame = +1
Query: 247 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 426
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 427 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 606
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 607 YVHQTIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 780
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 781 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 960
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 961 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 1089
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1090 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1269
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1270 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1449
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1450 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1629
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1630 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1809
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1810 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1989
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1990 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 2169
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2170 XXXXKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 2346
KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2347 S 2349
S
Sbjct: 719 S 719
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 500 bits (1287), Expect = e-158
Identities = 238/257 (92%), Positives = 253/257 (98%)
Frame = +1
Query: 4078 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 4257
GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 4258 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAG 4437
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 4438 SGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 4617
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 4618 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 4797
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 4798 LLGEIKHPLETDRIQAS 4848
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
dbj|BAA90870.1| 235K polyprotein [Apple latent spherical virus]
Length = 2079
Score = 353 bits (906), Expect = 3e-94
Identities = 384/1385 (27%), Positives = 592/1385 (42%), Gaps = 90/1385 (6%)
Frame = +1
Query: 2569 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 2736
DF W V T S+ L P +RL+ +R D+ + K P +T
Sbjct: 605 DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664
Query: 2737 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 2901
F Q L L +C ALS R P I LY ++ GKS+ L + +LD
Sbjct: 665 EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720
Query: 2902 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 3081
S++ +T R +RN + F + Y +Q L D+FGA + + DE ++
Sbjct: 721 SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780
Query: 3082 XXXXEAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEGGRYRDR 3258
K N TS + TAN+ P+ + F RR ILAEV +G Y
Sbjct: 781 MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPYFHE 839
Query: 3259 YRFTLHQKNEPYSRDD--------------RFQVMNYEQFLQYTVNQSKQHFSEQVDLRD 3396
+ + + D F + EQF+ + +NQ EQ +
Sbjct: 840 FILLKARTEQKIYLDQALREVASPIHLSPAEFYAVCAEQFVNF-LNQQGNALIEQQGVSY 898
Query: 3397 APHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEE-----RMMEVTET 3561
D + + F+ I+ T +Q + +E R E
Sbjct: 899 VRSDDFSFLKDYLQYKMGLDFQQCEIERIVTDYSLSIKNQTIFPAEHEHIFSRWRAELEA 958
Query: 3562 LTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKV 3741
L+ + + + LD + + L+ + N N P+E Y C + K
Sbjct: 959 LSLSE---LITMLDKHVTETFVYTLIKE----NHSNVVMSNLTPYECLI-YSFCKDKYKK 1010
Query: 3742 IGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLL 3921
+ EE+++Q +A+ L+ A +N P V L+L A VG L+
Sbjct: 1011 ETDATFSSLPEEEVKQ-----PWLAEFLSFTARLCLN-VPKWVTLVLALCAFCLVGYVLI 1064
Query: 3922 SWLKSLYTAPC----LLTFATLGTMKASGS-----------------LSSSQDQXXXXXX 4038
+ L+T C +L F++L S +S Q
Sbjct: 1065 KFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVKVHFVKTSFQPSDWKGIN 1124
Query: 4039 XXXXXXXYLLEASGPGAVEAKAQ--DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTR 4212
+ A A+ Q D + +L KH + + ++ Y IALG
Sbjct: 1125 VKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRN 1183
Query: 4213 VLMVYHVWLELQSGCYKV-GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVL 4389
L HVW + + Y + G +N +L +DLV+V P + F L
Sbjct: 1184 FLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSAL 1243
Query: 4390 KLEKWLLS-SHDPFMAGSGWFM-EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLK 4554
+ +L + + P +A + + E L+ V ++ ++ + L + D Y L
Sbjct: 1244 PKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLG 1303
Query: 4555 GVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQK 4734
+ C YT DT G C +PL++ G G+ + + +HV
Sbjct: 1304 SKPMPACYSYTF--DTFAGL---------CTSPLISMDG-GRCV-LLGLHVA-------G 1343
Query: 4735 DTIIAGSGSLITKEEYLEASLL----LGEIKHPLETDRIQASG--CLSGEEFFDAETVFP 4896
D G ++T E++ + + G + + T R ++ G CL G ++ + F
Sbjct: 1344 DKSKMGYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFL 1402
Query: 4897 EGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIF 5067
E + T + I D+ TEPAI+ +D RL +++ D F
Sbjct: 1403 E---------NSSLTPSLIHDCIDIDM--------TTEPAILSKKDPRLQYTNNKDFDPF 1445
Query: 5068 KKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDN 5244
GM KY A +E+E++++ D +F ++P C LS D+ NG+ D+
Sbjct: 1446 LSGMGKYAVEAHSF----DEDEELFEDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDD 1498
Query: 5245 EYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTL--NRDLPMYQRILDMDELCAT 5418
G+V+ T+EG+P R G GK G PG + + N L + +++ L
Sbjct: 1499 YAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKN 1557
Query: 5419 TIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIP 5598
++G+D KDE++ SK+Y KTRLFTILP++YN LVRKYF SFV++LM LHN +P
Sbjct: 1558 IFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVP 1617
Query: 5599 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDD--- 5769
TKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG+TPR +L I +RI+ Y +
Sbjct: 1618 TKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSF 1677
Query: 5770 ---------QGD-RRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVR 5919
GD R LM +TR G+ L+ V+ GIPSGF LTVIVNSLVN F V
Sbjct: 1678 AITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVH 1737
Query: 5920 WSWEHMMAS---SSLF----FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGF 6078
+++ + +S +L+ F V AV GDDNL+SV + FNL +S+ L + G
Sbjct: 1738 FAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGV 1797
Query: 6079 TLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNA 6258
TLK+G+DK++EIL F P EK DFLKR F +AP HWVR+ + +A
Sbjct: 1798 TLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDA 1856
Query: 6259 VATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV 6438
AT N + L E +G ELY R I+ K + +++ +L+G S
Sbjct: 1857 DATLENCKSALFEALFHG--ELYYNDLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSY 1914
Query: 6439 ASIFE 6453
A +
Sbjct: 1915 AKAIQ 1919
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 321 bits (823), Expect = 2e-89
Identities = 220/609 (36%), Positives = 318/609 (52%), Gaps = 31/609 (5%)
Frame = +1
Query: 4618 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITKEEYL 4785
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 4786 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SGAPRQATTSEI 4950
+LL D + CL E + V G L+ S AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 4951 KKSSISADLEALTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 5121
++S IS D+ L E T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLIS-DIVDLPCE---TVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 5122 -EEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5298
+E++ + D IFD +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 5299 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 5475
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 5476 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5655
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 5656 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR------RLHLMLAATTRL 5817
+KGTNWFNGD+ RFDG+TPR +++++ RI LY DR R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 5818 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCVE 5976
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 5977 LAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFL 6153
AV GDDNLVSV + +S +NL +SSFL + G LK+G K +E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 6154 KRCF-KARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKEL 6324
KR F R LAP HWVR++ Q NV+G LRE F E
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 6325 YCKWRRDLI 6351
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus]
gb|ALT45950.1| polyprotein [Currant latent virus]
Length = 2124
Score = 335 bits (858), Expect = 2e-88
Identities = 280/828 (33%), Positives = 401/828 (48%), Gaps = 46/828 (5%)
Frame = +1
Query: 4108 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 4281
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 4282 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFM--E 4455
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 4456 MLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4626
+ G V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 4627 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 4806
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E L
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEVPL--- 1417
Query: 4807 EIKHPLETDRIQASGCLSGE--EFFDAETVFPE--GLLEPSG-----APRQATTSEIKKS 4959
SG L GE E + T E G + G AP + + S
Sbjct: 1418 ------------QSGTLVGEGPECYCIPTASSECYGSVTKLGKWTGPAPYFLEKTSLVPS 1465
Query: 4960 SISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEE 5130
IS D++ + TEPAI+ +D RL +D + FK GMLKY A + E+
Sbjct: 1466 MISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----ED 1517
Query: 5131 EKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5307
E+ ++ D +F ++P + C L++DE NG+ D +V+ TSEG+P R
Sbjct: 1518 EEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPA 1574
Query: 5308 GEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIY 5484
G GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1575 GATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVY 1634
Query: 5485 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5664
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AK
Sbjct: 1635 IKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAK 1694
Query: 5665 GTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLYNDDQGDRRLHLML 5799
G NWFNGDYSRFDG+TPR +L+ I +RI TL N D R LM
Sbjct: 1695 GENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLA--RSLLMD 1752
Query: 5800 AATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS-------LF 5958
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + S+
Sbjct: 1753 MASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYS 1812
Query: 5959 FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPE 6138
F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+DK +EIL F P
Sbjct: 1813 FKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPIS 1872
Query: 6139 KCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDK 6318
K DFLKR F ++P HWVR+ M+ A N + E +G
Sbjct: 1873 KVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENCQSAAFEAVFHG-- 1929
Query: 6319 ELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIFE 6453
E Y K +I C+KN V PT F++ LSG S A+ +
Sbjct: 1930 EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 306 bits (783), Expect = 8e-85
Identities = 211/541 (39%), Positives = 287/541 (53%), Gaps = 30/541 (5%)
Frame = +1
Query: 4921 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 5091
AP + + S IS D++ + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 5092 AVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVS 5268
A + E+E+ ++ D +F ++P + C L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 5269 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 5445
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 5446 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 5625
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 5626 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLY 5760
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI TL
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 5761 NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMM 5940
N D R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLA--RSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSIC 396
Query: 5941 ASSS-------LFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSD 6099
S+ F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+D
Sbjct: 397 KKSNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGAD 456
Query: 6100 KSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNV 6279
K +EIL F P K DFLKR F ++P HWVR+ M+ A N
Sbjct: 457 KDEEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENC 515
Query: 6280 EGFLRELFHYGDKELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIF 6450
+ E +G E Y K +I C+KN V PT F++ LSG S A+
Sbjct: 516 QSAAFEAVFHG--EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAI 570
Query: 6451 E 6453
+
Sbjct: 571 Q 571
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 303 bits (775), Expect = 7e-84
Identities = 199/509 (39%), Positives = 282/509 (55%), Gaps = 26/509 (5%)
Frame = +1
Query: 5005 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DL 5172
TEPAI+ +D RL +++ D F GM KY A +E+E++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 5173 PGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 5352
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 5353 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5526
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 5527 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5706
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 5707 VTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTRLGVAGIGLYRV 5847
+TPR +L I +RI+ Y + GD R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 5848 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 6006
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 6007 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6186
SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 6187 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6366
+AP HWVR+ + +A AT N + L E +G ELY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 6367 NRVPHPTTYSFEELERSWLSGKSVASIFE 6453
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>gb|ANC51274.1| polyprotein [Cherry rasp leaf virus]
Length = 2230
Score = 317 bits (812), Expect = 5e-83
Identities = 250/772 (32%), Positives = 374/772 (48%), Gaps = 34/772 (4%)
Frame = +1
Query: 4093 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 4266
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1298 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1355
Query: 4267 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 4446
G ++ + +L +DLVIV P + F L + +L + +
Sbjct: 1356 GYAVAKDKIFISPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1415
Query: 4447 FM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4611
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1416 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1470
Query: 4612 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 4791
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1471 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDI 1515
Query: 4792 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 4971
+L +D++ G E + + G + GA ++K+S+
Sbjct: 1516 AL----------SDKV---GQGPEEMYIPTKNSECFGAVTKLGAWTGPKPYFLEKTSLIP 1562
Query: 4972 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 5139
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1563 SLISTSIDVERTTEPAILSQRDKRLKDSTNPEFDVFLEGMKKYAVEAHSL----DEDLEV 1618
Query: 5140 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5316
++ D +F ++P + C LS D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1619 FEDALDRVFSEIP---DHACEDLSNDQVCNGIEDDPYAEGIVMQTAEGYPFCTQRPAGAS 1675
Query: 5317 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5493
GK G PG + + D + + + L ++G+D KDE++ SK+Y
Sbjct: 1676 GKSWLFAGAPGDWHIVPDSLLANEMHKKEVALSKGLFEPLIGIDFPKDEKVDSSKVYIKP 1735
Query: 5494 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5673
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1736 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1795
Query: 5674 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------DQGDRRLHLMLAATTR 5814
WFNGDYSRFDG+TPR +L I +RI LY++ + R LM A+TR
Sbjct: 1796 WFNGDYSRFDGITPRNVLQGIVKRINKLYSNKNSFAITDPNLCINSDLARSLLMDMASTR 1855
Query: 5815 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 5973
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1856 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1915
Query: 5974 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 6153
A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1916 SYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1975
Query: 6154 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6306
KR F +AP HW+R+ + A AT N E LFH
Sbjct: 1976 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2026
Score = 75.5 bits (184), Expect = 2e-09
Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2569 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2736
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 761 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 820
Query: 2737 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2913
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 821 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 880
Query: 2914 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3093
+T R +RN + F + Y++Q L D+FGA + + DE ++
Sbjct: 881 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 940
Query: 3094 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 3240
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 941 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 989
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (758), Expect = 1e-81
Identities = 188/478 (39%), Positives = 262/478 (54%), Gaps = 26/478 (5%)
Frame = +1
Query: 4951 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVT 5121
K S I + + +R TEPAI+ RD RL D D+F +GM KY A +
Sbjct: 34 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL---- 89
Query: 5122 EEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5298
+E+ ++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P
Sbjct: 90 DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQ 146
Query: 5299 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLS 5475
R G +GK G PG + + + + + + + ++G+D KDE++ S
Sbjct: 147 RPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSS 206
Query: 5476 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5655
K+Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++
Sbjct: 207 KVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQL 266
Query: 5656 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LM 5796
+KGTNWFNGDYSRFDG+TPR +L I +RI YN+ D L L
Sbjct: 267 RSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLT 326
Query: 5797 LAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL------- 5955
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L
Sbjct: 327 DMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLH 386
Query: 5956 FFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPP 6135
F V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P
Sbjct: 387 SFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPL 446
Query: 6136 EKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6306
EK DFLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 447 EKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 312 bits (800), Expect = 1e-81
Identities = 249/772 (32%), Positives = 370/772 (47%), Gaps = 34/772 (4%)
Frame = +1
Query: 4093 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCY--KV 4266
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 4267 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 4446
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 4447 FM--EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4611
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 4612 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 4791
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVV-------GDRSKMGYAQIVTLDDFSDV 1520
Query: 4792 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 4971
+L +D++ G E + + G + GA ++K+++
Sbjct: 1521 AL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIP 1567
Query: 4972 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 5139
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1568 SLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 5140 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5316
++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 5317 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5493
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 5494 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5673
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 5674 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAATTR 5814
WFNGDYSRFDG+TPR +L I +RI YN+ D L LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 5815 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 5973
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 5974 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 6153
A GDDNLVSV ++ FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 6154 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6306
KR F +AP HW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
Score = 73.2 bits (178), Expect = 1e-08
Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2569 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2736
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 766 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825
Query: 2737 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2913
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 826 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885
Query: 2914 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3093
+T R +RN + F + Y+++ L D+FGA + + DE ++
Sbjct: 886 PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945
Query: 3094 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 3240
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 946 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B;
AltName: Full=P1; Contains: RecName: Full=Protease
cofactor; Contains: RecName: Full=Putative helicase;
AltName: Full=Membrane-binding protein; AltName:
Full=NTP-binding protein; Short=NTB; Contains: RecName:
Full=Viral genome-linked protein; AltName: Full=VPg;
Contains: RecName: Full=Picornain 3C-like protease;
Short=3C-like protease; Contains: RecName:
Full=RNA-directed RNA polymerase
emb|CAF21713.1| polyprotein [Cherry rasp leaf virus]
Length = 2250
Score = 307 bits (787), Expect = 5e-80
Identities = 248/774 (32%), Positives = 371/774 (47%), Gaps = 36/774 (4%)
Frame = +1
Query: 4093 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 4260
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 4261 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGS 4440
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 4441 GWFM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 4605
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 4606 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYL 4785
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 4786 EASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSI 4965
+ +L +D++ G E + + G + GA ++K+S+
Sbjct: 1534 DVAL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTSL 1580
Query: 4966 SADLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEE 5133
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1581 IPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 5134 KIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 5310
++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 5311 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 5487
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 5488 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 5667
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 5668 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAAT 5808
TNWFNGDYSRFDG+TPR +L I +RI YN+ D L L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 5809 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSD 5967
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 5968 CVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCD 6147
V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 6148 FLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6306
FLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
Score = 75.5 bits (184), Expect = 2e-09
Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2569 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2736
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 781 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840
Query: 2737 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2913
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 841 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900
Query: 2914 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3093
+T R +RN + F + Y++Q L D+FGA + + DE ++
Sbjct: 901 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960
Query: 3094 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 3240
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 961 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009
>ref|YP_007697622.1| polyprotein [Arracacha virus B]
gb|AFI74271.1| polyprotein [Arracacha virus B]
Length = 2314
Score = 303 bits (777), Expect = 8e-79
Identities = 256/793 (32%), Positives = 377/793 (47%), Gaps = 39/793 (4%)
Frame = +1
Query: 4117 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 4290
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 4291 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDP--------FMAGSGW 4446
F NR + + L KDL IV T P L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVP--PFAPLAKRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 4447 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4626
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 4627 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKE-EYLEASLLL 4803
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 4804 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEA 4983
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 4984 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDL 5148
+ PAI+H+RD R+ + D FK GMLKY A E+ + D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 5149 TWDSIFDLPGGIERK-------CHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5307
+ I DL E + C +L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 5308 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 5484
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 5485 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5664
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 5665 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGD-----RRLHLMLA-------AT 5808
G NWFNGDYSRFDG+TPRC+L +A RI+ Y D+ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 5809 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 5979
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ S +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 5980 AVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKR 6159
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K +EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 6160 CFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWR 6339
F L HWVR+ A +N L E +G E Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 6340 RDLIDLCSKNRVP 6378
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
Score = 63.9 bits (154), Expect = 7e-06
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
Frame = +1
Query: 2560 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 2733
V DFQ W V + T + + P +RL+ LR D K IL M P
Sbjct: 669 VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728
Query: 2734 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 2910
F+ +L + E +A R P I+LY GKS C+ L + +LDS +
Sbjct: 729 RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788
Query: 2911 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 3090
+ R+ +RN + S+ + Y +Q ++ D+FGA E + II
Sbjct: 789 EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848
Query: 3091 XEAKGNTCCTSDFVFITANQAGLTPNA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 3267
S + T+N P + + K F RR I AEV A G ++ F
Sbjct: 849 AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908
>gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus]
Length = 173
Score = 233 bits (594), Expect(2) = 1e-70
Identities = 107/125 (85%), Positives = 111/125 (88%)
Frame = +1
Query: 6499 VAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRN 6678
VAP VHIVPVQ CLKWK EVP VVWCGPNCPNQL+N N CF IQAPQGSRYPLRNTV+N
Sbjct: 3 VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62
Query: 6679 LLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTV 6858
LLK+VHQR DEVYFTGALNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+
Sbjct: 63 LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122
Query: 6859 AAKGW 6873
AAKGW
Sbjct: 123 AAKGW 127
Score = 67.4 bits (163), Expect(2) = 1e-70
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +2
Query: 6881 FFS*AFLLENIPGPDGH*LGKPVNFVYHYHGFTWFIYFS 6997
FFS FL ENIPGPDGH LGKPVNFV HYHG TWF F+
Sbjct: 132 FFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170
>ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl virus]
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 273 bits (698), Expect = 1e-69
Identities = 198/572 (34%), Positives = 297/572 (51%), Gaps = 27/572 (4%)
Frame = +1
Query: 4948 IKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEE 5127
++KS I + + G TEP+I+ + D R D + KG+ K+ A T E
Sbjct: 1165 LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223
Query: 5128 ---EEKIWDLTWDSI-FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVL 5295
+ DL + + D+PGG K + SE E LNG+ G+ Y M +ST+ G+P L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280
Query: 5296 NRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERL 5466
+ E GK + +L G PG Y L+R+ P++ +++DE + I IV + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336
Query: 5467 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5646
PL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGINP G +WT+L
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396
Query: 5647 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR----RLHLMLAATTR 5814
K F+ DYS FDG P + + Y D G R L++ A+
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456
Query: 5815 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 5964
L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E + M + FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516
Query: 5965 DCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILP-EFNPPEK 6141
+ + +A+ GDDNLV+V + ++L ++ L +K+G DK++++ +F P +
Sbjct: 1517 E-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574
Query: 6142 CDFLKRCFKARG-DRYLAPXXXXXXXXXXHWVRETNMSNAV-ATQNNVEGFLRELFHYGD 6315
FL R F+ Y AP W+R T + + A N+EG LRE + +G
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633
Query: 6316 KELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV---ASIFEKEESEVVVIRD 6486
K ++ +R ++ + ++ R+P T FEELER W+S + ++ E E E++ +
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLSL-- 1691
Query: 6487 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCG 6582
P V + V+Q + VP V +CG
Sbjct: 1692 ------PTVEQLTVEQYSREINEFVPGVHFCG 1717
Score = 92.8 bits (229), Expect = 1e-14
Identities = 92/359 (25%), Positives = 144/359 (40%), Gaps = 16/359 (4%)
Frame = +1
Query: 2671 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 2850
KDKA + V FN + LD+ L + Q VG++R P C+ LYG
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403
Query: 2851 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 3030
GK++ ++I+D+L+ L T R++S + D +WS Y +Q AVL DDFG + + +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463
Query: 3031 DEA--EIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENR 3204
++ + I E KG T TS ++F+T+NQA V A + R
Sbjct: 464 NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522
Query: 3205 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3351
R +L EV T V+ FT+ +P+ R D Y + L
Sbjct: 523 RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576
Query: 3352 NQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYS 3531
+ H+++ L+ GI+ S D+LT
Sbjct: 577 EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615
Query: 3532 EERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAY---VNLKNHFGLGTDPFE 3699
+ M D I R II++ ++ + AY +NL+N F +GT P E
Sbjct: 616 DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670