BLASTX nr result
ID: Rehmannia29_contig00038649
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00038649
(7128 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 4100 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 4023 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 3992 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3639 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1217 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 971 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 946 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 495 e-157
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 318 4e-88
ref|YP_009220374.1| polyprotein [Currant latent virus] >gi|96655... 326 9e-86
gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus] 281 1e-83
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 301 3e-83
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 301 4e-83
gb|ANC51274.1| polyprotein [Cherry rasp leaf virus] 317 5e-83
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 1e-81
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 311 2e-81
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 311 2e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] >gi|820027... 306 1e-79
ref|YP_007697622.1| polyprotein [Arracacha virus B] >gi|38572452... 299 2e-77
ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl viru... 278 3e-71
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 4100 bits (10632), Expect = 0.0
Identities = 2012/2209 (91%), Positives = 2080/2209 (94%)
Frame = +1
Query: 220 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 399
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 400 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 579
KNLQVERDRCAMRE+EEEELL ADVEMEFMSEL+ F+APF FPGI+FGTV+ T P +GSS
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120
Query: 580 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 759
YA + I +A GL V EY KFQAP+AG RNFL+ + DAEVLT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180
Query: 760 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIITQA 939
DYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGS+P VAPL+ D ++ QA
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240
Query: 940 LSDEWCEWIYFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPG 1119
LSDEW EWIYFEEDYEEAL E FE+F+P A+ V P PLSPT VLDSA SY PG
Sbjct: 241 LSDEWSEWIYFEEDYEEALSEEFEIFFPFLESAK----VCEPAPLSPTSVLDSADSYLPG 296
Query: 1120 TKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGP 1299
TKWVYDSDEED+IP+AP+D+F+NK+FDLDFEDYCDTEY +QPA ++YTETWF+DGCLPGP
Sbjct: 297 TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356
Query: 1300 WFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKK 1479
WFKRG SLDEAIICEKLPLIGKSPLEL+IQYQV+PTGDLLLDVQRALFAYYE+EA PNKK
Sbjct: 357 WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416
Query: 1480 YFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGT 1659
+FDLNGVPTMLVFEDWR DLRYCLYAP ++GNQLKHLM +V+APLPGWLLDFPKR+KSGT
Sbjct: 417 HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476
Query: 1660 LQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1839
LQASGWN LRYFSKQATLGFLDGV+AKLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477 LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536
Query: 1840 ISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2019
IS+RGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537 ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596
Query: 2020 LGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSI 2199
LGQAHMGALKRSTKIWELVQKWDQPSEV+RID+EI+EILVEESPEKEEW R LMASPHSI
Sbjct: 597 LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656
Query: 2200 PECVIDLTHMKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2379
PECVIDLTHMKDLLG KCSS+KEAFEVG VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657 PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716
Query: 2380 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2559
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776
Query: 2560 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2739
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836
Query: 2740 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2919
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896
Query: 2920 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3099
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 897 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 956
Query: 3100 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3279
FVFITANQAGLTPGAVVHC+KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 957 FVFITANQAGLTPGAVVHCRKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1016
Query: 3280 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXXGFRVAGIKVPF 3459
RFQVMNYEQFLQYTVNQS+QHFSEQVDLRDAPHTQIF GF+ AGIKVPF
Sbjct: 1017 RFQVMNYEQFLQYTVNQSRQHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPF 1076
Query: 3460 TMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLK 3639
TMLK+LSGDQLTYYSEEKMME+TETLTPEDADIIRSRLDPGVITQQLQ+LLPKAAYVNLK
Sbjct: 1077 TMLKSLSGDQLTYYSEEKMMEITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLK 1136
Query: 3640 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKA 3819
NHFGLGTDPFEQPNPYFNCSQRAKVIGRFM+PKVTEEQLEQHKRGF IAKELAQGA KA
Sbjct: 1137 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKA 1196
Query: 3820 INDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3999
INDAPFLVKLLLGFGALYFVGLPLLSWL+SLYT PCLLTFATLGTMKASGSLSSSQDQ
Sbjct: 1197 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQET 1256
Query: 4000 XXXXXXXXXXXYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4179
YLLEASG GAVEAK QDVESELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1257 RRTASGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 1316
Query: 4180 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4359
TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV
Sbjct: 1317 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 1376
Query: 4360 LKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4539
LKIEKWLLSSHDPFMAGSGWFMEMLFRD+GVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1377 LKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1436
Query: 4540 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4719
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD II
Sbjct: 1437 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAII 1496
Query: 4720 AGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAP 4899
AGSGSLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS AP
Sbjct: 1497 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAP 1556
Query: 4900 RQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5079
RQATTSEIRKSSISADLE LTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD
Sbjct: 1557 RQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 1616
Query: 5080 MSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5259
MSPVTEEEQKIWDLTWDSIFDLPGGI KKC LLSEDENLNGVNGDNEYRGMVVSTSEGWP
Sbjct: 1617 MSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1676
Query: 5260 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5439
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL
Sbjct: 1677 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1736
Query: 5440 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5619
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1737 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1796
Query: 5620 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVA 5799
KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND+QG+RRLHLMLAATTRLGVA
Sbjct: 1797 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVA 1856
Query: 5800 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 5979
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV
Sbjct: 1857 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1916
Query: 5980 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 6159
SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1917 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1976
Query: 6160 LAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 6339
LAP HWVRETN+SNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCSK
Sbjct: 1977 LAPLSWLSLSESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSK 2036
Query: 6340 NRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKW 6519
NRVPHPTTYSFEELERSWLSG+SVASIFEKEEPE+IVIRDSASDVAPGVHIVPV+QCLKW
Sbjct: 2037 NRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKW 2096
Query: 6520 KAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTG 6699
AGEVPNVVWCGPNCPNQLRNAS+CFQIQAPQGSKYPLRNT RNLLKKVHQRGDEVYFTG
Sbjct: 2097 NAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTG 2156
Query: 6700 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 6846
SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2157 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 4023 bits (10432), Expect = 0.0
Identities = 1958/2209 (88%), Positives = 2059/2209 (93%)
Frame = +1
Query: 220 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 399
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 400 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 579
KNLQVERDRCAMRE+EEEELL ADVEMEFMSEL+ F+APF FPGI+FGTV+ T P +GSS
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120
Query: 580 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 759
YA + I +A GL V EY KFQAPRAGARNFL+ + D EVLT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180
Query: 760 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIITQA 939
DYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGSKP VAPL+ D +++ +A
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240
Query: 940 LSDEWCEWIYFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPG 1119
LSDEW EW YFEEDYEEAL EGFE+F+PP E KS P SPTCVLDSA SY G
Sbjct: 241 LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300
Query: 1120 TKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGP 1299
TKWVYDSDEE+Y+P+APVDQF+NK+F+LDF DYCD EY +QP GS+ TETWF+DGCLPGP
Sbjct: 301 TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360
Query: 1300 WFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKK 1479
WFKRGA +DEA+ICEKLPLIGKSPLEL+IQYQV PTGDLLLD+QRALFAYYEREA PNKK
Sbjct: 361 WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420
Query: 1480 YFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGT 1659
+FDLNGVPT+LVFEDWR+DLRYCL+AP I GNQLKHLMVV++ PLPGWLLDFPKR++SG
Sbjct: 421 FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480
Query: 1660 LQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1839
LQASGWN LRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481 LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540
Query: 1840 ISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2019
IS+RGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541 ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600
Query: 2020 LGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSI 2199
LG AHMGALKRSTKIWELVQKWD+PSEVK ID EII+IL+EESPEKEEWLR LMASPHS+
Sbjct: 601 LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660
Query: 2200 PECVIDLTHMKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2379
PECVIDLTHMKDLLG KCS++KEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661 PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720
Query: 2380 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2559
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780
Query: 2560 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2739
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840
Query: 2740 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2919
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900
Query: 2920 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3099
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 901 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 960
Query: 3100 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3279
FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 961 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1020
Query: 3280 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXXGFRVAGIKVPF 3459
RFQVMNYEQFLQY VNQSKQHFSEQVDLRDAPHTQIF GF+ AGIK+PF
Sbjct: 1021 RFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPF 1080
Query: 3460 TMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLK 3639
MLK+LSGDQLTYYSEEKMMEVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLK
Sbjct: 1081 CMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLK 1140
Query: 3640 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKA 3819
NHF LGTDPFEQPNPYFNCSQRAKVIGRFM+PKVTEEQLE HKRGF IAKELAQGAYKA
Sbjct: 1141 NHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKA 1200
Query: 3820 INDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3999
++DAPFLVKLLLGFGALYFVG PLLSWL+SLYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1201 VSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQET 1260
Query: 4000 XXXXXXXXXXXYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4179
YLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1261 RRTASGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGG 1320
Query: 4180 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4359
TRVLMVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPV
Sbjct: 1321 TRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPV 1380
Query: 4360 LKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4539
LK+EKWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1381 LKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1440
Query: 4540 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4719
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTII
Sbjct: 1441 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTII 1500
Query: 4720 AGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAP 4899
AGSGSLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS+AP
Sbjct: 1501 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAP 1560
Query: 4900 RQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5079
RQAT+SEI+KSSISADLE+LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAAD
Sbjct: 1561 RQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAAD 1620
Query: 5080 MSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5259
MSPVTE+E+KIW+LTWDSIFDLPGGI KC LLSEDENLNGVNGDNEYRGMVV+TSEGWP
Sbjct: 1621 MSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWP 1680
Query: 5260 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5439
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERL
Sbjct: 1681 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERL 1740
Query: 5440 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5619
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1741 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1800
Query: 5620 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVA 5799
KRMHAKGTNWFNGD SRFDGVTPRCLL+EI+RRITLLY D+QG RRLHLMLAATTRLGVA
Sbjct: 1801 KRMHAKGTNWFNGDSSRFDGVTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVA 1860
Query: 5800 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 5979
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLV
Sbjct: 1861 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1920
Query: 5980 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 6159
SVK++AA+DFNLKKLS+FLA FGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1921 SVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1980
Query: 6160 LAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 6339
LAP HWVRETN+SN+ ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCSK
Sbjct: 1981 LAPLSWLSLSESLHWVRETNMSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 2040
Query: 6340 NRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKW 6519
NRVPHPTTYSFEELERSWLSG++VASIFEKEEPEVIVIRD ASD+AP VHI+PVQQCLKW
Sbjct: 2041 NRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKW 2100
Query: 6520 KAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTG 6699
++ EVPNVVWCGPNCPNQL+NASTCFQIQAPQGSKYPLR+T+RN LKKVHQRGD+VYFTG
Sbjct: 2101 RSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTG 2160
Query: 6700 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 6846
++NQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW
Sbjct: 2161 AINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 3992 bits (10353), Expect = 0.0
Identities = 1957/2260 (86%), Positives = 2061/2260 (91%), Gaps = 51/2260 (2%)
Frame = +1
Query: 220 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 399
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 400 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 579
KNLQVERDRCAMRE+EEEELL ADVEMEF+SEL+ FVAPFSFPGI+FGT++ T P +G+S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120
Query: 580 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 759
YA + IF+A G V EYTKFQAP+AGARNFL+ DR DAE+LT VVRTAI NPGFGNPSF
Sbjct: 121 YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180
Query: 760 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPE------------------ 885
DYTGLGGDEF+YRF KDGLFADD+LGL RFVSAGFTEGS+
Sbjct: 181 DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240
Query: 886 --------------GRS-------------------VAPLSFEDLDIITQALSDEWCEWI 966
GR VAPL+ DLD++TQALSDEW W
Sbjct: 241 TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300
Query: 967 YFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPGTKWVYDSDE 1146
+ EEDYEEAL E F +++PP + +S+ E LSPTCVLDSA SY PGTKWVYDSDE
Sbjct: 301 HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360
Query: 1147 EDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGPWFKRGASLD 1326
EDY+P APVD+F+NK+F+LDF DYCD E +QPA +IYTETWF+DGCLPG WFKRG +D
Sbjct: 361 EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420
Query: 1327 EAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKKYFDLNGVPT 1506
EA++CEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYE+EA PNKK+FDLNGVPT
Sbjct: 421 EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480
Query: 1507 MLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGTLQASGWNFL 1686
+LVFEDWR+DLRYCL+AP I+GNQLKHLMVV++APLPGWLLDFPKR+KSG LQASGWN L
Sbjct: 481 LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540
Query: 1687 RYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMISRRGEILK 1866
RYF++Q TLGFLDGVVAKLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEMIS+RGEIL+
Sbjct: 541 RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600
Query: 1867 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 2046
ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601 ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660
Query: 2047 KRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSIPECVIDLTH 2226
KRSTKIWELVQKWD+PSEVK ID+EII++LVEESPEKEEWLR LMASPHS+PECVIDLTH
Sbjct: 661 KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720
Query: 2227 MKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 2406
MKDLLG KCS++KEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721 MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780
Query: 2407 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 2586
ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840
Query: 2587 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 2766
TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900
Query: 2767 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 2946
LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960
Query: 2947 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQA 3126
NQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSDFVFITANQA
Sbjct: 961 NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 1020
Query: 3127 GLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3306
GLTP AVVHCK+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ
Sbjct: 1021 GLTPSAVVHCKRAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 1080
Query: 3307 FLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXXGFRVAGIKVPFTMLKNLSGD 3486
FLQY VNQS+QHFSEQVDLRDAPHTQIF G R AGI++PF MLK+LSGD
Sbjct: 1081 FLQYAVNQSQQHFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGD 1140
Query: 3487 QLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLKNHFGLGTDP 3666
QLTYYSEE+MMEVTETL PE+ADI+RSRLDPGVITQQLQ LLPKAAYVNLKNHFGLGTDP
Sbjct: 1141 QLTYYSEEEMMEVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDP 1200
Query: 3667 FEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKAINDAPFLVK 3846
FEQPNPYFNCSQRAKVIGRF++PKVTEEQLEQ KRGF +AKELAQGA KAINDAPFLVK
Sbjct: 1201 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVK 1260
Query: 3847 LLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXX 4026
LLLGFGALYFVG PLLSWLR+LYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1261 LLLGFGALYFVGAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRER 1320
Query: 4027 XXYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 4206
YLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV
Sbjct: 1321 RRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 1380
Query: 4207 WLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS 4386
WLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLK+EKWLLS
Sbjct: 1381 WLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLS 1440
Query: 4387 SHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 4566
SHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1441 SHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 1500
Query: 4567 DDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITR 4746
DDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLIT+
Sbjct: 1501 DDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITK 1560
Query: 4747 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIR 4926
EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS+APRQAT+SEI+
Sbjct: 1561 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIK 1620
Query: 4927 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQ 5106
KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEE+
Sbjct: 1621 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEE 1680
Query: 5107 KIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 5286
K+W+LTWDSIFDLPGGI KC LL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE
Sbjct: 1681 KVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1740
Query: 5287 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 5466
AGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDV
Sbjct: 1741 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDV 1800
Query: 5467 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5646
KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN
Sbjct: 1801 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1860
Query: 5647 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVAGIGLYRVSG 5826
WFNGDYSRFDGVTPRCLL+EI+RRIT LYNDNQG RRLHLMLAATTRLGVAGIGLYRVSG
Sbjct: 1861 WFNGDYSRFDGVTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSG 1920
Query: 5827 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASD 6006
GIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLVSVK++AA+D
Sbjct: 1921 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAAD 1980
Query: 6007 FNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXX 6186
FNLKKLS FLA FGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAP
Sbjct: 1981 FNLKKLSLFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2040
Query: 6187 XXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTY 6366
HWVRETN+SNA ATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCS+NRVPHPTTY
Sbjct: 2041 SESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTY 2100
Query: 6367 SFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKWKAGEVPNVV 6546
SFEELERSWLSG++VASIFEKEEPEVIVIRD ASD+APGVHIVPVQQCLKWK E+PNVV
Sbjct: 2101 SFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVV 2160
Query: 6547 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTGSLNQSLVHW 6726
WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVR+ LKKVHQRGD+VYFTG+LNQSLVHW
Sbjct: 2161 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHW 2220
Query: 6727 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 6846
VAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2221 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gb|AAW63128.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
Length = 2227
Score = 3639 bits (9437), Expect = 0.0
Identities = 1782/2229 (79%), Positives = 1945/2229 (87%), Gaps = 20/2229 (0%)
Frame = +1
Query: 220 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 399
MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 400 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 579
+NL+VE DR + ++ L D+EM FMS+L F FS IT G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 580 YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 753
Y + I++A GL V +Y FQ + R FL DR DAEVLT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 754 SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 933
+FDYTGLGGD KYRFD D L++D + GL RFVSAGFTE +K G L+ +D+D +T
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238
Query: 934 QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 1062
QALSDEW EW+YFEED EE L E ++ + A QK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1063 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQ 1242
P+SP VL SA SY GTKW YDS++EDY+P+AP+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1243 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 1422
P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1423 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 1602
D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1603 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 1782
NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1783 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1962
VWDLIIKAKD+AF L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1963 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 2142
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2143 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 2319
ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL +KC+++K+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2320 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 2499
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 2500 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 2679
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 2680 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 2859
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 2860 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 3039
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 3040 XXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGR 3219
EAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 3220 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXX 3399
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3400 XXXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDP 3579
GF+ AGI +PF MLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3580 GVITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLE 3759
+ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3760 QHKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTF 3939
KRGF + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3940 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXXYLLEASGSGAVEAKTQDVESELASLSKHL 4119
A LGTM+ASGSLSSSQDQ YLLEASG GA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 4120 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 4299
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 4300 LGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEAD 4479
+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 4480 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 4659
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 4660 KIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGE 4839
KIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 4840 EFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLH 5019
EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 5020 DRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLN 5199
DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI KC LLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 5200 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 5379
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 5380 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 5559
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 5560 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 5739
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 5740 NQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 5919
RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 5920 TSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEF 6099
+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNKEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 6100 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFH 6279
NPPEKCDFLKRCFKARGDRYLAP HWVRETN++NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 6280 YGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRD 6459
YGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE++V++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 6460 SASDVAPGVHIVPVQQCLKWKAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRN 6639
+ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNA+ CF IQAPQGS+YPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 6640 TVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 6819
TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 6820 ESTIAAKGW 6846
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1217 bits (3150), Expect = 0.0
Identities = 586/675 (86%), Positives = 621/675 (92%)
Frame = +1
Query: 4822 GCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHN 5001
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 5002 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLS 5181
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI KC LLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 5182 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 5361
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 5362 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 5541
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 5542 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 5721
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 5722 TLLYNDNQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 5901
T LY D RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 5902 EHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNK 6081
EHMMAS+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNK
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 6082 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGF 6261
EILPEFNPPEKCDFLKRCFKARGDRYLAP HWVRETN++NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 6262 LRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPE 6441
LRELFHYGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 6442 VIVIRDSASDVAPGVHIVPVQQCLKWKAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGS 6621
++V++D+ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNA+ CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 6622 KYPLRNTVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 6801
+YPLR+TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 6802 NDAGLLESTIAAKGW 6846
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 971 bits (2511), Expect = 0.0
Identities = 483/721 (66%), Positives = 565/721 (78%), Gaps = 20/721 (2%)
Frame = +1
Query: 220 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 399
MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 400 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 579
+NL+VE DR + ++ L D+EM FMS+L F FS IT G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 580 YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 753
Y + I++A GL V +Y FQ + R FL DR DAEVLT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 754 SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 933
+FDYTGLGGD KYRFD D L++D + GL RFVSAGFTE +K G L+ +D+D +T
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238
Query: 934 QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 1062
QALSDEW EW+YFEED EE L E ++ + A QK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1063 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQ 1242
P+SP VL SA SY GTKW YDS++EDY+P+AP+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1243 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 1422
P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1423 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 1602
D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1603 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 1782
NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1783 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1962
VWDLIIKAKD+AF L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1963 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 2142
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2143 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 2319
ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL +KC+++K+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2320 S 2322
S
Sbjct: 719 S 719
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 946 bits (2445), Expect = 0.0
Identities = 463/548 (84%), Positives = 492/548 (89%)
Frame = +1
Query: 2323 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 2502
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 2503 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 2682
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 2683 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 2862
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 2863 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 3042
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 3043 XXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRY 3222
EAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 3223 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXX 3402
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3403 XXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPG 3582
GF+ AGI +PF MLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3583 VITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQ 3762
+ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3763 HKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFA 3942
KRGF + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3943 TLGTMKAS 3966
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 495 bits (1274), Expect = e-157
Identities = 235/257 (91%), Positives = 252/257 (98%)
Frame = +1
Query: 4051 GSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 4230
G GA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 4231 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAG 4410
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 4411 SGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 4590
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 4591 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASL 4770
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 4771 LLGEIKHPLETDRIQAS 4821
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 318 bits (814), Expect = 4e-88
Identities = 214/609 (35%), Positives = 319/609 (52%), Gaps = 31/609 (5%)
Frame = +1
Query: 4591 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITREEYL 4758
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 4759 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SNAPRQATTSEI 4923
+LL D + CL E + V G L+ S+AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 4924 RKSSISADLEILTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 5094
+S IS +++ +T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLISDIVDLPC----ETVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 5095 -EEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5271
+EQ+ + D IFD + +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 5272 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 5448
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 5449 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5628
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 5629 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR------RLHLMLAATTRL 5790
+KGTNWFNGD+ RFDG+TPR +++++ RI LY R R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 5791 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAST-------SLFFSDCVE 5949
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ ++ V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 5950 LAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNP-PEKCDFL 6126
AV GDDNLVSV + +S +NL +S+FL + G LK+G K++E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 6127 KRCF-KARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE--LFHYGDKDL 6297
KR F R LAP HWVR++ Q NV+G LRE F +
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 6298 YCKWRRDLI 6324
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus]
gb|ALT45950.1| polyprotein [Currant latent virus]
Length = 2124
Score = 326 bits (835), Expect = 9e-86
Identities = 267/822 (32%), Positives = 397/822 (48%), Gaps = 40/822 (4%)
Frame = +1
Query: 4081 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 4254
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 4255 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFM--E 4428
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 4429 MLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4599
+ V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 4600 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLG 4779
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEV----- 1415
Query: 4780 EIKHPLETDRIQASG----CL--SGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 4941
PL++ + G C+ + E + + T + AP + + S IS
Sbjct: 1416 ----PLQSGTLVGEGPECYCIPTASSECYGSVTKLGKWT---GPAPYFLEKTSLVPSMIS 1468
Query: 4942 ADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKI 5112
D++I + TEPAI+ +D RL +D + FK GMLKY A + E+++
Sbjct: 1469 KDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----EDEEF 1520
Query: 5113 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5289
++ D +F ++P C+ L++DE NG+ D +V+ TSEG+P R G
Sbjct: 1521 FEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPAGAT 1577
Query: 5290 GKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIYQDV 5466
GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1578 GKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVYIKP 1637
Query: 5467 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5646
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AKG N
Sbjct: 1638 KTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAKGEN 1697
Query: 5647 WFNGDYSRFDGVTPRCLLIEIARRI--------TLLYND-----NQGSRRLHLMLAATTR 5787
WFNGDYSRFDG+TPR +L+ I +RI +L D N R LM A+TR
Sbjct: 1698 WFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLARSLLMDMASTR 1757
Query: 5788 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTS-------LFFSDCV 5946
G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + ++ F V
Sbjct: 1758 YGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYSFKQLV 1817
Query: 5947 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6126
AV GDDN+VSV ++ FNL L+ FL D+G TLK+G+DK++EIL F P K DFL
Sbjct: 1818 SYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPISKVDFL 1877
Query: 6127 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCK 6306
KR F ++P HWVR+ +N +FH + Y
Sbjct: 1878 KRKFTVLQGHVVSPLNRINITERLHWVRKGMTEVDAIVENCQSAAFEAVFH--GEHYYKD 1935
Query: 6307 WRRDLIDLCSKN--RVPHPTTYSFEELERSWLSGRSVASIFE 6426
+ C+KN V PT F++ LSG S A+ +
Sbjct: 1936 ICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus]
Length = 173
Score = 281 bits (720), Expect = 1e-83
Identities = 131/164 (79%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
Frame = +1
Query: 6472 VAPGVHIVPVQQCLKWKAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRN 6651
VAP VHIVPVQ CLKWK EVP VVWCGPNCPNQL+N + CF IQAPQGS+YPLRNTV+N
Sbjct: 3 VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62
Query: 6652 LLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTI 6831
LLK+VHQR DEVYFTG+LNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+
Sbjct: 63 LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122
Query: 6832 AAKGW*VVL-PS*AFLLENIPGPEGH*LGKPVNFLCHYHGSTWF 6960
AAKGW L S FL ENIPGP+GH LGKPVNF+CHYHG+TWF
Sbjct: 123 AAKGWCAFLFFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWF 166
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 301 bits (770), Expect = 3e-83
Identities = 197/509 (38%), Positives = 280/509 (55%), Gaps = 26/509 (5%)
Frame = +1
Query: 4978 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIF-DL 5145
TEPAI+ +D RL +++ D F GM KY A +E++++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 5146 PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 5325
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 PMFT---CEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 5326 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5499
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 5500 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5679
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 5680 VTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTRLGVAGIGLYRV 5820
+TPR +L I +RI+ Y + N R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 5821 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCVELAVVGDDNLV 5979
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 5980 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 6159
SV + FNL +S L + G TLK+G+DKN+EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 6160 LAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 6339
+AP HWVR+ + +A AT N + L E +G +LY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 6340 NRVPHPTTYSFEELERSWLSGRSVASIFE 6426
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 301 bits (770), Expect = 4e-83
Identities = 204/538 (37%), Positives = 283/538 (52%), Gaps = 27/538 (5%)
Frame = +1
Query: 4894 APRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 5064
AP + + S IS D++I + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 5065 AVAADMSPVTEEEQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVS 5241
A + E+++ ++ D +F ++P C+ L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 5242 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 5418
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 5419 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 5598
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 5599 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI--------TLLYND----- 5739
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI +L D
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 5740 NQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 5919
N R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLARSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSICKK 398
Query: 5920 TS-------LFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKN 6078
++ F V AV GDDN+VSV ++ FNL L+ FL D+G TLK+G+DK+
Sbjct: 399 SNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKD 458
Query: 6079 KEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEG 6258
+EIL F P K DFLKR F ++P HWVR+ +N
Sbjct: 459 EEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRKGMTEVDAIVENCQSA 518
Query: 6259 FLRELFHYGDKDLYCKWRRDLIDLCSKN--RVPHPTTYSFEELERSWLSGRSVASIFE 6426
+FH + Y + C+KN V PT F++ LSG S A+ +
Sbjct: 519 AFEAVFH--GEHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 571
>gb|ANC51274.1| polyprotein [Cherry rasp leaf virus]
Length = 2230
Score = 317 bits (812), Expect = 5e-83
Identities = 255/772 (33%), Positives = 369/772 (47%), Gaps = 34/772 (4%)
Frame = +1
Query: 4066 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 4239
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1298 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1355
Query: 4240 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 4419
G ++ + +L +DLVIV P + F L + +L + +
Sbjct: 1356 GYAVAKDKIFISPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1415
Query: 4420 FM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4584
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1416 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1470
Query: 4585 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEA 4764
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1471 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDI 1515
Query: 4765 SLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 4941
+L + P E + S C A T LE ++ + S IS
Sbjct: 1516 ALSDKVGQGPEEMYIPTKNSECFGAVTKLGAWTGPKPYFLEKTS---------LIPSLIS 1566
Query: 4942 ADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQKI 5112
+++ +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1567 TSIDV----ERTTEPAILSQRDKRLKDSTNPEFDVFLEGMKKYAVEAHSL----DEDLEV 1618
Query: 5113 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5289
++ D +F ++P C LS D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1619 FEDALDRVFSEIPD---HACEDLSNDQVCNGIEDDPYAEGIVMQTAEGYPFCTQRPAGAS 1675
Query: 5290 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5466
GK G PG + + D + + + L ++G+D KDE++ SK+Y
Sbjct: 1676 GKSWLFAGAPGDWHIVPDSLLANEMHKKEVALSKGLFEPLIGIDFPKDEKVDSSKVYIKP 1735
Query: 5467 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5646
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1736 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1795
Query: 5647 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 5787
WFNGDYSRFDG+TPR +L I +RI LY++ N R LM A+TR
Sbjct: 1796 WFNGDYSRFDGITPRNVLQGIVKRINKLYSNKNSFAITDPNLCINSDLARSLLMDMASTR 1855
Query: 5788 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSDCV 5946
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1856 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1915
Query: 5947 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6126
A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK DFL
Sbjct: 1916 SYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1975
Query: 6127 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6279
KR F +AP HW+R+ + A AT N E LFH
Sbjct: 1976 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2026
Score = 74.7 bits (182), Expect = 3e-09
Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2542 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2709
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 761 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 820
Query: 2710 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2886
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 821 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 880
Query: 2887 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3066
+T R +RN + F + Y++Q L D+FGA + + DE ++
Sbjct: 881 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 940
Query: 3067 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3213
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 941 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 989
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (757), Expect = 1e-81
Identities = 189/476 (39%), Positives = 261/476 (54%), Gaps = 26/476 (5%)
Frame = +1
Query: 4930 SSISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEE 5100
S IS +++ +R TEPAI+ RD RL D D+F +GM KY A + +E
Sbjct: 40 SLISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DE 91
Query: 5101 EQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRK 5277
+ ++++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R
Sbjct: 92 DLEVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRP 148
Query: 5278 NGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKI 5454
G +GK G PG + + + + + + + ++G+D KDE++ SK+
Sbjct: 149 AGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKV 208
Query: 5455 YQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHA 5634
Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +
Sbjct: 209 YIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRS 268
Query: 5635 KGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLA 5775
KGTNWFNGDYSRFDG+TPR +L I +RI YN+ N R L
Sbjct: 269 KGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDM 328
Query: 5776 ATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FF 5934
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 329 ASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSF 388
Query: 5935 SDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEK 6114
V A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK
Sbjct: 389 RQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEK 448
Query: 6115 CDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6279
DFLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 449 VDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
dbj|BAA90870.1| 235K polyprotein [Apple latent spherical virus]
Length = 2079
Score = 311 bits (798), Expect = 2e-81
Identities = 260/820 (31%), Positives = 395/820 (48%), Gaps = 38/820 (4%)
Frame = +1
Query: 4081 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV-GSLTKT 4257
D + +L KH + + ++ Y IALG L HVW + + Y + G
Sbjct: 1150 DQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAK 1208
Query: 4258 FPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS-SHDPFMAGSGWFM-EM 4431
+N +L +DLV+V P + F L + +L + + P +A + + E
Sbjct: 1209 NKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEP 1268
Query: 4432 LFRDNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFF 4602
L+ V ++ ++ + L + D Y L + C YT DT G
Sbjct: 1269 LYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLGSKPMPACYSYTF--DTFAGL----- 1321
Query: 4603 YVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLL--- 4773
C +PL++ G G+ + + +HV D G ++T E++ + +
Sbjct: 1322 ----CTSPLISMDG-GRCV-LLGLHVA-------GDKSKMGYAQIVTLEDFSDINFSEKV 1368
Query: 4774 -LGEIKHPLETDRIQASG--CLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISA 4944
G + + T R ++ G CL G ++ + F E + T + I
Sbjct: 1369 GQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFLE---------NSSLTPSLIHDCIDI 1418
Query: 4945 DLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIW 5115
D+ TEPAI+ +D RL +++ D F GM KY A +E+++++
Sbjct: 1419 DM--------TTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELF 1466
Query: 5116 DLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAG 5292
+ D +F ++P C LS D+ NG+ D+ G+V+ T+EG+P R G G
Sbjct: 1467 EDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTG 1523
Query: 5293 KERFLLGLPGCYTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 5466
K G PG + + N L + +++ L ++G+D KDE++ SK+Y
Sbjct: 1524 KTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQ 1582
Query: 5467 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5646
KTRLFTILP++YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTN
Sbjct: 1583 KTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTN 1642
Query: 5647 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 5787
WFNGDYSRFDG+TPR +L I +RI+ Y + N R LM +TR
Sbjct: 1643 WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTR 1702
Query: 5788 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCV 5946
G+ L+ V+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V
Sbjct: 1703 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLV 1762
Query: 5947 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6126
AV GDDNL+SV + FNL +S L + G TLK+G+DKN+EIL F P EK DFL
Sbjct: 1763 SYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFL 1822
Query: 6127 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCK 6306
KR F +AP HWVR+ + +A AT N + L E +G +LY
Sbjct: 1823 KRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYN 1879
Query: 6307 WRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFE 6426
R I+ K + +++ +L+G S A +
Sbjct: 1880 DLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 1919
Score = 68.2 bits (165), Expect = 3e-07
Identities = 67/237 (28%), Positives = 96/237 (40%), Gaps = 10/237 (4%)
Frame = +1
Query: 2542 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 2709
DF W V T S+ L P +RL+ +R D+ + K P +T
Sbjct: 605 DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664
Query: 2710 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 2874
F Q L L +C ALS R P I LY ++ GKS+ L + +LD
Sbjct: 665 EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720
Query: 2875 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 3054
S++ +T R +RN + F + Y +Q L D+FGA + + DE ++
Sbjct: 721 SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780
Query: 3055 XXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEGGRY 3222
K N TS + TAN+ P + F RR ILAEV +G Y
Sbjct: 781 MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPY 836
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 311 bits (798), Expect = 2e-81
Identities = 253/772 (32%), Positives = 365/772 (47%), Gaps = 34/772 (4%)
Frame = +1
Query: 4066 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 4239
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 4240 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 4419
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 4420 FM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4584
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 4585 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEA 4764
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDV 1520
Query: 4765 SLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 4941
+L + P E + S C A T LE + + S IS
Sbjct: 1521 ALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTT---------LIPSLIS 1571
Query: 4942 ADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQKI 5112
+++ +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1572 TSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 5113 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5289
++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 5290 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5466
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 5467 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5646
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 5647 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 5787
WFNGDYSRFDG+TPR +L I +RI YN+ N R LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 5788 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSDCV 5946
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 5947 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6126
A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 6127 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6279
KR F +AP HW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
Score = 72.4 bits (176), Expect = 2e-08
Identities = 65/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2542 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2709
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 766 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825
Query: 2710 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2886
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 826 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885
Query: 2887 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3066
+T R +RN + F + Y+++ L D+FGA + + DE ++
Sbjct: 886 PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945
Query: 3067 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3213
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 946 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B;
AltName: Full=P1; Contains: RecName: Full=Protease
cofactor; Contains: RecName: Full=Putative helicase;
AltName: Full=Membrane-binding protein; AltName:
Full=NTP-binding protein; Short=NTB; Contains: RecName:
Full=Viral genome-linked protein; AltName: Full=VPg;
Contains: RecName: Full=Picornain 3C-like protease;
Short=3C-like protease; Contains: RecName:
Full=RNA-directed RNA polymerase
emb|CAF21713.1| polyprotein [Cherry rasp leaf virus]
Length = 2250
Score = 306 bits (783), Expect = 1e-79
Identities = 251/774 (32%), Positives = 366/774 (47%), Gaps = 36/774 (4%)
Frame = +1
Query: 4066 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 4233
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 4234 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGS 4413
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 4414 GWFM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 4578
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 4579 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYL 4758
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 4759 EASLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSS 4935
+ +L + P E + S C A T LE ++ + S
Sbjct: 1534 DVALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTS---------LIPSL 1584
Query: 4936 ISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQ 5106
IS +++ +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1585 ISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 5107 KIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 5283
++++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 5284 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 5460
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 5461 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 5640
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 5641 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAAT 5781
TNWFNGDYSRFDG+TPR +L I +RI YN+ N R L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 5782 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSD 5940
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 5941 CVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCD 6120
V A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 6121 FLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6279
FLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
Score = 74.7 bits (182), Expect = 3e-09
Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Frame = +1
Query: 2542 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2709
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 781 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840
Query: 2710 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2886
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 841 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900
Query: 2887 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3066
+T R +RN + F + Y++Q L D+FGA + + DE ++
Sbjct: 901 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960
Query: 3067 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3213
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 961 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009
>ref|YP_007697622.1| polyprotein [Arracacha virus B]
gb|AFI74271.1| polyprotein [Arracacha virus B]
Length = 2314
Score = 299 bits (765), Expect = 2e-77
Identities = 254/793 (32%), Positives = 377/793 (47%), Gaps = 39/793 (4%)
Frame = +1
Query: 4090 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 4263
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 4264 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDP--------FMAGSGW 4419
F NR + + L KDL IV T F L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVPPFAPLA--KRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 4420 FMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4599
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 4600 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITRE-EYLEASLLL 4776
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 4777 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEI 4956
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 4957 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDL 5121
+ PAI+H+RD R+ + D FK GMLKY A E+ Q D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 5122 TWDSIFDL-------PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5280
+ I DL CR+L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 5281 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 5457
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 5458 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5637
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 5638 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQ-----GSRRLHLMLA-------AT 5781
G NWFNGDYSRFDG+TPRC+L +A RI+ Y ++ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 5782 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---STSLFFSDCVEL 5952
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ + +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 5953 AVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKR 6132
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K++EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 6133 CFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWR 6312
F L HWVR+ A +N L E +G + Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 6313 RDLIDLCSKNRVP 6351
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
>ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl virus]
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 278 bits (712), Expect = 3e-71
Identities = 205/582 (35%), Positives = 302/582 (51%), Gaps = 27/582 (4%)
Frame = +1
Query: 4891 NAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAV 5070
N P + T +RKS I + + G TEP+I+ + D R D + KG+ K+
Sbjct: 1158 NVPHKTT---LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNET 1213
Query: 5071 AADMSPVTEE---EQKIWDLTWDSI-FDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVV 5238
A T E + DL + + D+PGG K + SE E LNG+ G+ Y M +
Sbjct: 1214 ACCFDHETVEVALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDM 1270
Query: 5239 STSEGWPEVLNRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIV 5409
ST+ G+P L+ E GK + +L G PG Y L+R+ P++ +++DE + I IV
Sbjct: 1271 STACGYPYTLS----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIV 1326
Query: 5410 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 5589
+ AKDERLPL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGIN
Sbjct: 1327 SCECAKDERLPLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGIN 1386
Query: 5590 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR----R 5757
P G +WT+L K F+ DYS FDG P + + Y D GS R
Sbjct: 1387 PSGLEWTVLAKNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLAR 1446
Query: 5758 LHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM--------- 5910
L++ A+ L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E +
Sbjct: 1447 HALLMMASNHLTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITR 1506
Query: 5911 -MASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEI 6087
M T FS+ + +A+ GDDNLV+V + ++L ++ L +K+G DKN+++
Sbjct: 1507 TMGMTQRTFSE-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDV 1564
Query: 6088 LP-EFNPPEKCDFLKRCFKARG-DRYLAPXXXXXXXXXXHWVRETNVSNAV-ATQNNVEG 6258
+F P + FL R F+ Y AP W+R T + + A N+EG
Sbjct: 1565 AQVQFQPLGELTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEG 1624
Query: 6259 FLRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS---GRSVASIFEK 6429
LRE + +G K ++ +R ++ + ++ R+P T FEELER W+S + ++ E
Sbjct: 1625 SLREAYMHG-KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEP 1683
Query: 6430 EEPEVIVIRDSASDVAPGVHIVPVQQCLKWKAGEVPNVVWCG 6555
E E++ + P V + V+Q + VP V +CG
Sbjct: 1684 SEHELLSL--------PTVEQLTVEQYSREINEFVPGVHFCG 1717
Score = 91.7 bits (226), Expect = 3e-14
Identities = 91/359 (25%), Positives = 145/359 (40%), Gaps = 16/359 (4%)
Frame = +1
Query: 2644 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 2823
KDKA + V FN + LD+ L + Q VG++R P C+ LYG
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403
Query: 2824 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 3003
GK++ ++I+D+L+ L T R++S + D +WS Y +Q AVL DDFG + + +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463
Query: 3004 DEA--EIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENR 3177
++ + I E KG T TS ++F+T+NQA V A + R
Sbjct: 464 NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522
Query: 3178 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3324
R +L EV T V+ FT+ +P+ R D Y + L
Sbjct: 523 RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576
Query: 3325 NQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYS 3504
+ H+++ L+ GI+ + S D+LT
Sbjct: 577 EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615
Query: 3505 EEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAY---VNLKNHFGLGTDPFE 3672
+ M D I R +I++ ++ + AY +NL+N F +GT P E
Sbjct: 616 DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670