BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038500
         (8605 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            1864   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  1864   0.0  
gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotc...  1863   0.0  
gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus]      1863   0.0  
gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotc...  1861   0.0  
gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotc...  1861   0.0  
gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotc...  1861   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  1860   0.0  
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  1858   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      1828   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      1827   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      1826   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1823   0.0  
gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus]         1296   0.0  
gb|AKN08994.1| replicase [Caucasus prunus virus]                     1212   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   944   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   940   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   943   0.0  
ref|YP_009357235.1| replication-associated polyprotein [Watermel...   945   0.0  
gb|AQQ73540.1| replicase [Apricot vein clearing associated virus]     943   0.0  

>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 1864 bits (4829), Expect = 0.0
 Identities = 1004/1943 (51%), Positives = 1277/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRPNGV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLIN 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++G  E +S        
Sbjct: 1046 VLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGTDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            A+ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 ARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRL+FREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
 sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA replication polyprotein; AltName: Full=ORF1
            protein; Includes: RecName: Full=Viral methyltransferase;
            Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
            dioxygenase; Includes: RecName: Full=Protease; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase
 emb|CAC39422.1| hypothetical protein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1864 bits (4828), Expect = 0.0
 Identities = 1004/1943 (51%), Positives = 1277/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDVSD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRPNGV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G  +F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLIN 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  R  H++++     + R+  SH  +KGNVNV++G    +S        
Sbjct: 1046 VLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            A+ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 ARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1863 bits (4826), Expect = 0.0
 Identities = 1003/1943 (51%), Positives = 1280/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFQVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   ++D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRD+E+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDSERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLID 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIARLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++GL E +S        
Sbjct: 1046 VLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGLDEMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  +KKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + K+W+  +  SI     D+
Sbjct: 1284 DVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQKLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            ++ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 SRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFDRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             I+ KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIKEKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP E+IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEVHLMKDAHFPQEIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1979

 Score = 1863 bits (4826), Expect = 0.0
 Identities = 990/1942 (50%), Positives = 1262/1942 (64%), Gaps = 60/1942 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENH+L DV P VVN    + C IKE KV   K+                  
Sbjct: 79   HSHPLSKIFENHLLFDVLPSVVNTSRLVMCSIKESKVLVFKNIRDRSRKGTSDISTLDSL 138

Query: 393  -NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
             N +   +N ++  +D+ RY E     +F  S       FS+   K L   +S FFHDE+
Sbjct: 139  KNDHTTFINRLVASKDISRYSEEA--DAFFQSKRDSPELFSKNFIKSLQNKESIFFHDEV 196

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F++VYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 197  HHWTKAQMFSFLKSTKVKRFIFTLVYPPEILKKFANSQNPKIYDFKVDKGRLFFFPDGVK 256

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D+  
Sbjct: 257  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSVYAHHLFEISVGELVTDSKIFFSDYSS 316

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ YD+FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 317  IDMSKIFLDRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 376

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  + L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 377  FFEQFCKRLIERQTSWGLFGHSFFQKLTDMALSSLPNGIARIFPQWKKKNTFEFLFSLGT 436

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L +++ER VCY H+++ + F+VV  D + +LDPL            RVDDG+LERVR+PF
Sbjct: 437  LVVDIERKVCYEHVLEKWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGFLERVRLPF 496

Query: 1470 FN---YSGDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N   Y    R+   +  L  + + +R+  S  +      +I W+   ++    F+S S 
Sbjct: 497  WNLSDYDLKRRRMNAYDILSSRFEEDRKIESMQKGPNKMLQIEWYGIKEFEVDPFISNSI 556

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  +    +  +     + CT           L+  L F    +  EG
Sbjct: 557  TKFTLFEALV-GKRVNPRKYSYSK-----QACT-----------LSNYLTF----LCAEG 595

Query: 1809 LDAFSFD--VNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKENG 1982
            LD F+ +  +   +  + HD      D     P+G ++ ES +    +      E  E  
Sbjct: 596  LDGFNMEEHLERRLKLIGHDTP----DDADEEPDGIEHTESISPFFVDPSDLLRECLEET 651

Query: 1983 EMHGYQNGSEKK---------------DKSDDLNYRNMFVEVKCHAAHGEPINVPADGNC 2117
                    SE                  K  ++NY +MF    C   HG+ I  P+DGNC
Sbjct: 652  STEHVHEVSEVNVPPEREELIIPIDHCPKKFEINYGDMFKPHNCMNMHGDEIPTPSDGNC 711

Query: 2118 FFNALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFR 2288
            FF+A    F++  +P + R + +++L+      F  L + I P+GV+ E E IY +  FR
Sbjct: 712  FFSAFAETFEVD-NPGELRSDFSNWLMVFDGGSFAELAKRIEPDGVYMEAELIYLFCVFR 770

Query: 2289 NVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYG 2447
             V +V+H    + +  +    G +EGH++ RG+HF+ +  Y  +  FS   + DLP  + 
Sbjct: 771  EVTLVIHDRSQEKENVYAIHSGFEEGHMVHRGDHFVGIETYRVEDTFSDPLLSDLPCGFS 830

Query: 2448 ERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICD 2627
            E  EL  F F    F+C  ++GR++AFL T  + DYGHNGM+YP N W+  +DEII++C+
Sbjct: 831  E--ELTKFHFQPDHFNCAQFRGRKAAFL-TKVDADYGHNGMIYPHNSWVPPLDEIIQLCN 887

Query: 2628 PDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHD 2807
               D+N AL+ FY+  S LG+HRDNE+VY DDPILTV  SG    ++EF+       M  
Sbjct: 888  QGSDFNCALINFYEPNSSLGFHRDNEQVYNDDPILTVCTSGEGIIAIEFKDQTVSFLMTT 947

Query: 2808 ASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEA 2987
             +F +MPKG QK+ARH V     R+SITFRKH+R L+G+ I+  E +     +N CLI+A
Sbjct: 948  GTFFLMPKGFQKKARHSVSNKVSRVSITFRKHIRRLNGSPIAIKEENY----RNTCLIDA 1003

Query: 2988 VAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISV 3167
             ++ +K     +   L++ +   WS +  E +G T+ DC    EAL + ++++ D +  V
Sbjct: 1004 FSKSMKRSKQAIIARLKAANSPFWSRYLSEGNGGTIEDCQSACEALDVTVDLNVDGRCLV 1063

Query: 3168 MSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYN 3338
            +  G   + +  ++ H+++++    + R+  SH   KGN+NV++GL E +         N
Sbjct: 1064 LGRGALRITMALKENHFSVIQAAQLMERTFVSHLSMKGNINVLEGLHEMLDSNVGATGVN 1123

Query: 3339 AIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTG 3518
             IQF A  E    L  SFL  TTGI LG  LDNG K+F+  H L  + + +      + G
Sbjct: 1124 KIQFTANFEYARTLANSFLNMTTGICLGRALDNGEKYFR--HILTDQVRQIGFEVTMVCG 1181

Query: 3519 FAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEK 3698
            FAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +K
Sbjct: 1182 FAGSGKSRQLQSWLHSRKKGNFCVVSPRTNLAADWSFKLELEPNEQRKVSTFEKFIKTDK 1241

Query: 3699 SKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHD 3878
            SKLDLI++DELTLFPNGYLD L +ELT +    ++VL+FDPLQARYHN+ D  IL FEHD
Sbjct: 1242 SKLDLIVIDELTLFPNGYLDLLVYELTNVNRYCQIVLLFDPLQARYHNKMDESILTFEHD 1301

Query: 3879 VDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKE 4058
            VD L G + + Y+Y + R++K F+  F       +    + K+W+  +  SI     D++
Sbjct: 1302 VDRLIGGQNINYIYSTHRMSKYFNRFFDVPCFNQANRVEEQKLWIFDDVYSIPSICLDRQ 1361

Query: 4059 QP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRA 4235
            +P DVLLV+S +EK  +      +TFGE+QGLTFNH CI+LSES+AASNE RW VA+TR+
Sbjct: 1362 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHACILLSESSAASNEFRWMVAITRS 1421

Query: 4236 KERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGID 4415
            + R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + + GC  D
Sbjct: 1422 RNRFSLCSTFLGGIEEFKVRRKESLITSILQGEKITFARLNLMLKCNLIRNEKKNGCS-D 1480

Query: 4416 EMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDL 4595
            E+DREERL GDPFLKPFI+LGQRI   E  + E E  EP CQTHL+I+EPNF  CYNFD 
Sbjct: 1481 EVDREERLEGDPFLKPFIFLGQRIETHEEKKDEIEVREPTCQTHLYITEPNFGLCYNFDF 1540

Query: 4596 IRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWM 4766
            IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWM
Sbjct: 1541 IREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWM 1597

Query: 4767 AVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQ 4946
            AV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+
Sbjct: 1598 AVRKRLVFREEEENYQRLSRAHLVGGLLYANFKKKMGLEFSFDQGLLEESINAFEKKKLE 1657

Query: 4947 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAP 5126
            KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAP
Sbjct: 1658 KSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1717

Query: 5127 WCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSF 5306
            WCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSF
Sbjct: 1718 WCRYLEAQIRSQLPEEIYIHSNKNFDDLNNWVKKFFQRDICVESDYEAFDASQDEYILSF 1777

Query: 5307 EMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYE 5486
            E+HLMKDA FP  +IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYE
Sbjct: 1778 EIHLMKDAKFPQAIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYE 1837

Query: 5487 WREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKE 5666
            WR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKE
Sbjct: 1838 WRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKE 1897

Query: 5667 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVT 5846
            PELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVT
Sbjct: 1898 PELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVT 1957

Query: 5847 HLDKLKTKVRLLFEEQSSEEDI 5912
            H+DKLKTKVR LF EQSS+EDI
Sbjct: 1958 HIDKLKTKVRDLFLEQSSDEDI 1979


>gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1861 bits (4821), Expect = 0.0
 Identities = 1001/1943 (51%), Positives = 1280/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDG+LER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDDGHLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESVQKGPNKMLQIEWYGIKEFQVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   ++D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLID 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++G+ E +S        
Sbjct: 1046 VLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGIDEMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGVDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  +KKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            ++ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 SRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDENEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEVHLMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1861 bits (4821), Expect = 0.0
 Identities = 1001/1943 (51%), Positives = 1280/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDG+LER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDDGHLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESVQKGPNKMLQIEWYGIKEFQVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   ++D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLID 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++G+ E +S        
Sbjct: 1046 VLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGIDEMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  +KKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            ++ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 SRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDENEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEVHLMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1861 bits (4820), Expect = 0.0
 Identities = 1001/1943 (51%), Positives = 1280/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNAFNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FS+   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSKNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFQVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLE-VLLGKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  F
Sbjct: 694  CFFSAFAETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   ++D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLDDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRD+E+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDSERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLID 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++GL E +S        
Sbjct: 1046 VLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGLDEMLSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRAKQIGIDVTMVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  RKKGNF V+ PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVISPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLIGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            ++ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 SRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1860 bits (4817), Expect = 0.0
 Identities = 1001/1943 (51%), Positives = 1273/1943 (65%), Gaps = 61/1943 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 393  -NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
             N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  DNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            R DDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLERIRLPF 488

Query: 1470 FN---YSGDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N   Y    R+  ++  L  + + ER   S  +      +I WH   +++   F+S S 
Sbjct: 489  WNLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 1952
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 1953 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 2114
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 2115 CFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 2285
            CFF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVF 752

Query: 2286 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 2444
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGF 812

Query: 2445 GERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 2624
             E  E+  F+F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC
Sbjct: 813  SE--EITKFRFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2625 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 2804
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+G V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMT 929

Query: 2805 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 2984
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN  LI+
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTRLID 985

Query: 2985 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 3164
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 3165 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 3335
            V+  G   + +  +  H++++     + R+  SH  +KG++NV++G  E +S        
Sbjct: 1046 VLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGV 1105

Query: 3336 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 3515
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTVVC 1163

Query: 3516 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 3695
            GFAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 3696 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 3875
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 3876 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4055
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4056 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4232
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4233 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4412
            ++ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 SRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4413 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4592
            DE+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4593 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4763
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4764 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 4943
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 4944 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 5123
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 5124 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 5303
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 5304 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 5483
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 5484 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 5663
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 5664 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 5843
            EPEL YNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 5844 THLDKLKTKVRLLFEEQSSEEDI 5912
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1858 bits (4812), Expect = 0.0
 Identities = 999/1942 (51%), Positives = 1273/1942 (65%), Gaps = 60/1942 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIK------------------- 389
            H HP S+  ENH+L DV PGVVN    + C IKE KV   K                   
Sbjct: 71   HSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSL 130

Query: 390  SNQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 569
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGGPELFSRNFIKSLENKEAVFFHDEV 188

Query: 570  HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 749
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 750  SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 929
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 930  VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 1109
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 1110 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 1289
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 1290 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF 1469
            L ++VER VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 1470 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 1628
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 1629 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 1808
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 1809 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVT----------------- 1937
            LD F+ +        +H ++  LK AG +  +    DE E +T                 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDTSD----DEEEELTSVEQTGPIKILADPLSF 634

Query: 1938 LNEGGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNC 2117
            +NE   +     E       Q  ++   +  ++NY ++F    C   HG+ I  P+DGNC
Sbjct: 635  MNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694

Query: 2118 FFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFR 2288
            FF+A    F++   P   R + + +L+E NG  +  L E IRP+G++ E E IY +  FR
Sbjct: 695  FFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFR 753

Query: 2289 NVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYG 2447
             V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + 
Sbjct: 754  GVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFS 813

Query: 2448 ERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICD 2627
            E  E+  F F    F+C  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC 
Sbjct: 814  E--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870

Query: 2628 PDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHD 2807
               D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M  
Sbjct: 871  QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930

Query: 2808 ASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEA 2987
             SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+A
Sbjct: 931  GSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLIDA 986

Query: 2988 VAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISV 3167
             ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++   K  V
Sbjct: 987  FSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVV 1046

Query: 3168 MSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYN 3338
            +  G   + +  +  H++++     + R+  SH  +KGNVNV++G  E +S        N
Sbjct: 1047 LGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVN 1106

Query: 3339 AIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTG 3518
             IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + G
Sbjct: 1107 KIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVCG 1164

Query: 3519 FAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEK 3698
            FAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +K
Sbjct: 1165 FAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDK 1224

Query: 3699 SKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHD 3878
            SKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQAR+HN+ D  IL FEHD
Sbjct: 1225 SKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHD 1284

Query: 3879 VDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKE 4058
            VD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D++
Sbjct: 1285 VDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344

Query: 4059 QP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRA 4235
            +P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404

Query: 4236 KERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGID 4415
            + R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-D 1463

Query: 4416 EMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDL 4595
            E+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD 
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523

Query: 4596 IRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWM 4766
            IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWM
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWM 1580

Query: 4767 AVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQ 4946
            AV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+
Sbjct: 1581 AVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLE 1640

Query: 4947 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAP 5126
            KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAP
Sbjct: 1641 KSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1700

Query: 5127 WCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSF 5306
            WCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSF
Sbjct: 1701 WCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSF 1760

Query: 5307 EMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYE 5486
            E+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYE
Sbjct: 1761 EIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYE 1820

Query: 5487 WREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKE 5666
            WR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKE
Sbjct: 1821 WRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKE 1880

Query: 5667 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVT 5846
            PELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVT
Sbjct: 1881 PELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVT 1940

Query: 5847 HLDKLKTKVRLLFEEQSSEEDI 5912
            H+DKLKTKVR LF EQSS+EDI
Sbjct: 1941 HIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1828 bits (4736), Expect = 0.0
 Identities = 984/1938 (50%), Positives = 1253/1938 (64%), Gaps = 56/1938 (2%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENHIL DV P VV+    I C IKE KV   K+                  
Sbjct: 71   HSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDT 130

Query: 393  --NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 566
              + +   +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE
Sbjct: 131  SASDHTSFINRLVASKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189

Query: 567  IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 746
            +HHW+K  +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190  VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249

Query: 747  TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 926
             +E YEQ  N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+ 
Sbjct: 250  KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309

Query: 927  VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 1106
             +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310  SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369

Query: 1107 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 1286
            LFFEQ CKRLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LG
Sbjct: 370  LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429

Query: 1287 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1466
            TL +E+ER VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++P
Sbjct: 430  TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489

Query: 1467 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1625
            F+N    DP++    +     +K  +  +  +    P+K   +I W+     D  F++  
Sbjct: 490  FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548

Query: 1626 KAVFPCEEGIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEG 1793
             + F   E +   + H + Y+ + +  V       +C      +  +  L   L  +  G
Sbjct: 549  ISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAG 606

Query: 1794 VEP-----EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNE 1946
             +P     EGL   + + +   D  +   +  +    +  P    EG     ++    +E
Sbjct: 607  RDPIESESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESE 666

Query: 1947 GGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFN 2126
            G     E  E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+
Sbjct: 667  GEIGKEESFEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFS 723

Query: 2127 ALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVK 2297
            A    FD P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V 
Sbjct: 724  AFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVT 782

Query: 2298 IVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERS 2456
            +++H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  
Sbjct: 783  LIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE-- 840

Query: 2457 ELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG 2636
            EL NF F    F+C  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   
Sbjct: 841  ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGD 899

Query: 2637 DYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASF 2816
            D+N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF
Sbjct: 900  DFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSF 959

Query: 2817 LIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAE 2996
             +MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++
Sbjct: 960  FLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSK 1015

Query: 2997 GLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSF 3176
             L      +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  
Sbjct: 1016 ALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGE 1075

Query: 3177 GHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQF 3350
            G   V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF
Sbjct: 1076 GAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQF 1135

Query: 3351 NAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGS 3530
             A+ E    L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGS
Sbjct: 1136 IADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGS 1193

Query: 3531 GKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLD 3710
            GKSR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD
Sbjct: 1194 GKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLD 1253

Query: 3711 LIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCL 3890
            +I+LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L
Sbjct: 1254 MIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRL 1313

Query: 3891 TGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-D 4067
             G ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P D
Sbjct: 1314 IGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCD 1373

Query: 4068 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4247
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+
Sbjct: 1374 VLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRL 1433

Query: 4248 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4427
            SFC + LGGMD+F +     L    L  ++I   +   M + NL+ ++ + GC  DE+DR
Sbjct: 1434 SFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDR 1492

Query: 4428 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4607
            EERL GDPFLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR K
Sbjct: 1493 EERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREK 1552

Query: 4608 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4778
            E+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKK
Sbjct: 1553 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKK 1609

Query: 4779 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4958
            RLVFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  
Sbjct: 1610 RLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCG 1669

Query: 4959 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 5138
            TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 1670 TIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 1729

Query: 5139 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5318
            LE+QIR QLPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFDACQDEYILSFE+HL
Sbjct: 1730 LEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHL 1789

Query: 5319 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5498
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR G
Sbjct: 1790 MKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRG 1849

Query: 5499 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5678
            QPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 1850 QPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELV 1909

Query: 5679 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5858
            YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 1910 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 1969

Query: 5859 LKTKVRLLFEEQSSEEDI 5912
            LKT+V+ LF EQSS+EDI
Sbjct: 1970 LKTRVKDLFLEQSSDEDI 1987


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1827 bits (4732), Expect = 0.0
 Identities = 984/1938 (50%), Positives = 1253/1938 (64%), Gaps = 56/1938 (2%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENHIL DV P VV+    I C IKE KV   K+                  
Sbjct: 71   HSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDT 130

Query: 393  --NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 566
              + +   +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE
Sbjct: 131  SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189

Query: 567  IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 746
            +HHW+K  +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190  VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249

Query: 747  TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 926
             +E YEQ  N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+ 
Sbjct: 250  KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309

Query: 927  VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 1106
             +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310  SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369

Query: 1107 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 1286
            LFFEQ CKRLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LG
Sbjct: 370  LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429

Query: 1287 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1466
            TL +E+ER VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++P
Sbjct: 430  TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489

Query: 1467 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1625
            F+N    DP++    +     +K  +  +  +    P+K   +I W+     D  F++  
Sbjct: 490  FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548

Query: 1626 KAVFPCEEGIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEG 1793
             + F   E +   + H + Y+ + +  V       +C      +  +  L   L  +  G
Sbjct: 549  ISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAG 606

Query: 1794 VEP-----EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNE 1946
             +P     EGL   + + +   D  +   +  +    +  P    EG     ++    +E
Sbjct: 607  RDPIESESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESE 666

Query: 1947 GGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFN 2126
            G     E  E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+
Sbjct: 667  GEIGKEESFEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFS 723

Query: 2127 ALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVK 2297
            A    FD P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V 
Sbjct: 724  AFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVT 782

Query: 2298 IVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERS 2456
            +++H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  
Sbjct: 783  LIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE-- 840

Query: 2457 ELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG 2636
            EL NF F    F+C  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   
Sbjct: 841  ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGD 899

Query: 2637 DYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASF 2816
            D+N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF
Sbjct: 900  DFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSF 959

Query: 2817 LIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAE 2996
             +MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++
Sbjct: 960  FLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSK 1015

Query: 2997 GLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSF 3176
             L      +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  
Sbjct: 1016 ALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGE 1075

Query: 3177 GHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQF 3350
            G   V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF
Sbjct: 1076 GAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQF 1135

Query: 3351 NAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGS 3530
             A+ E    L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGS
Sbjct: 1136 IADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGS 1193

Query: 3531 GKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLD 3710
            GKSR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD
Sbjct: 1194 GKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLD 1253

Query: 3711 LIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCL 3890
            +I+LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L
Sbjct: 1254 MIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRL 1313

Query: 3891 TGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-D 4067
             G ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P D
Sbjct: 1314 IGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCD 1373

Query: 4068 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4247
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+
Sbjct: 1374 VLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRL 1433

Query: 4248 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4427
            SFC + LGGMD+F +     L    L  ++I   +L  M + NL+ ++ + GC  DE+DR
Sbjct: 1434 SFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCS-DEVDR 1492

Query: 4428 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4607
            EERL GDPFLKPFI+LGQRI +      E E  EP CQTHL+I+EPNF  CYNFD IR K
Sbjct: 1493 EERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREK 1552

Query: 4608 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4778
            E+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKK
Sbjct: 1553 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKK 1609

Query: 4779 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4958
            RLVFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  
Sbjct: 1610 RLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCG 1669

Query: 4959 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 5138
            TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 1670 TIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 1729

Query: 5139 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5318
            LE+QIR QLPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYILSFE+HL
Sbjct: 1730 LEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHL 1789

Query: 5319 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5498
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR G
Sbjct: 1790 MKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRG 1849

Query: 5499 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5678
            QPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 1850 QPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELV 1909

Query: 5679 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5858
            YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 1910 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 1969

Query: 5859 LKTKVRLLFEEQSSEEDI 5912
            LKT+V+ LF EQSS+EDI
Sbjct: 1970 LKTRVKDLFLEQSSDEDI 1987


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1826 bits (4731), Expect = 0.0
 Identities = 981/1944 (50%), Positives = 1257/1944 (64%), Gaps = 62/1944 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENHIL DV P VV+    I C IKE KV   K+                  
Sbjct: 71   HSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDT 130

Query: 393  --NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 566
              + +   +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE
Sbjct: 131  SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189

Query: 567  IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 746
            +HHW+K  +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190  VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249

Query: 747  TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 926
             +E YEQ  N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+ 
Sbjct: 250  KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309

Query: 927  VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 1106
             +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310  SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369

Query: 1107 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 1286
            LFFEQ CKRLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LG
Sbjct: 370  LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429

Query: 1287 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1466
            TL +E+ER VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++P
Sbjct: 430  TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489

Query: 1467 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1625
            F+N    DP++    +     +K  +  +  +    P+K   +I W+     D  F++  
Sbjct: 490  FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548

Query: 1626 KAVFPCEEGIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGV 1796
             + F   E +   + H + Y+ +     K+ ++     +++ ++       E +  E  +
Sbjct: 549  ISEFTILEALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRL 602

Query: 1797 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKE 1976
            +  G D    ++  L  G    + +G  DA +   E      S  V      + +GE + 
Sbjct: 603  QSAGRDPIESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQH 657

Query: 1977 NGEMHGYQNGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPAD 2108
              ++     G   K++S +                +++ ++F    C   HG  I  P D
Sbjct: 658  RADLEVESEGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMD 717

Query: 2109 GNCFFNALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYA 2279
            GNCFF+A    FD P D    R   A +L       +  +G  IRPNGV+ E E IY + 
Sbjct: 718  GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776

Query: 2280 RFRNVKIVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPI 2438
             +R V +++H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP 
Sbjct: 777  IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836

Query: 2439 IYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIK 2618
             Y E  EL NF F    F+C  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+
Sbjct: 837  GYSE--ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIR 893

Query: 2619 ICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVE 2798
            ICD   D+N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       
Sbjct: 894  ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953

Query: 2799 MHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCL 2978
            M   SF +MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CL
Sbjct: 954  MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCL 1009

Query: 2979 IEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEK 3158
            I A+++ L      +   L++ +   WS F  + +G ++ DC    EAL + +++  D K
Sbjct: 1010 IRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGK 1069

Query: 3159 ISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH-- 3332
              V+  G   V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +       
Sbjct: 1070 CLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTG 1129

Query: 3333 YNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCL 3512
             N +QF A+ E    L  SFL  TTGI L   LDNG K+F   H      K +      +
Sbjct: 1130 VNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAI 1187

Query: 3513 TGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKK 3692
             GFAGSGKSR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK 
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247

Query: 3693 EKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFE 3872
            +KSKLD+I+LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FE
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307

Query: 3873 HDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGD 4052
            HDVD L G ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCID 1367

Query: 4053 KEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALT 4229
            + +P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALT
Sbjct: 1368 QGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1427

Query: 4230 RAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCG 4409
            RAK R+SFC + LGGMD+F +     L    L  ++I   +   M + NL+ ++ + GC 
Sbjct: 1428 RAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS 1487

Query: 4410 IDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNF 4589
             DE+DREERL GDPFLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNF
Sbjct: 1488 -DEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNF 1546

Query: 4590 DLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTF 4760
            D IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTF
Sbjct: 1547 DFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTF 1603

Query: 4761 WMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKK 4940
            WMAVKKRLVFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KK
Sbjct: 1604 WMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKK 1663

Query: 4941 LQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQF 5120
            L+KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQF
Sbjct: 1664 LEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 1723

Query: 5121 APWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYIL 5300
            APWCRYLE+QIR QLPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFD CQDEYIL
Sbjct: 1724 APWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYIL 1783

Query: 5301 SFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCR 5480
            SFE+HLMKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CR
Sbjct: 1784 SFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCR 1843

Query: 5481 YEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIV 5660
            YEWR GQPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIV
Sbjct: 1844 YEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIV 1903

Query: 5661 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFI 5840
            KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFI
Sbjct: 1904 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI 1963

Query: 5841 VTHLDKLKTKVRLLFEEQSSEEDI 5912
            VTH+DKLKT+V+ LF EQSS+EDI
Sbjct: 1964 VTHIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1823 bits (4723), Expect = 0.0
 Identities = 980/1944 (50%), Positives = 1256/1944 (64%), Gaps = 62/1944 (3%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS------------------ 392
            H HP S+  ENHIL DV P VV+    I C IKE KV   K+                  
Sbjct: 71   HSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDT 130

Query: 393  --NQNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 566
              + +   +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE
Sbjct: 131  SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189

Query: 567  IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 746
            +HHW+K  +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190  VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249

Query: 747  TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 926
             +E YEQ  N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+ 
Sbjct: 250  KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309

Query: 927  VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 1106
             +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310  SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369

Query: 1107 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 1286
            LFFEQ CKRLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LG
Sbjct: 370  LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429

Query: 1287 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1466
            TL +E+ER VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++P
Sbjct: 430  TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489

Query: 1467 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1625
            F+N    DP++    +     +K  +  +  +    P+K   +I W+     D  F++  
Sbjct: 490  FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548

Query: 1626 KAVFPCEEGIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGV 1796
             + F   E +   + H + Y+ +     K+ ++     +++ ++       E +  E  +
Sbjct: 549  ISEFTILEALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRL 602

Query: 1797 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKE 1976
            +  G D    ++  L  G    + +G  DA +   E      S  V      + +GE + 
Sbjct: 603  QSAGRDPIESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQH 657

Query: 1977 NGEMHGYQNGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPAD 2108
              ++     G   K++S +                +++ ++F    C   HG  I  P D
Sbjct: 658  RADLEVESEGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMD 717

Query: 2109 GNCFFNALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYA 2279
            GNCFF+A    FD P D    R   A +L       +  +G  IRPNGV+ E E IY + 
Sbjct: 718  GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776

Query: 2280 RFRNVKIVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPI 2438
             +R V +++H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP 
Sbjct: 777  IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836

Query: 2439 IYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIK 2618
             Y E  EL NF F    F+C  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+
Sbjct: 837  GYSE--ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIR 893

Query: 2619 ICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVE 2798
            ICD   D+N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       
Sbjct: 894  ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953

Query: 2799 MHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCL 2978
            M   SF +MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CL
Sbjct: 954  MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCL 1009

Query: 2979 IEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEK 3158
            I A+++ L      +   L++ +   WS F  + +G ++ DC    EAL + +++  D K
Sbjct: 1010 IRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGK 1069

Query: 3159 ISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH-- 3332
              V+  G   V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +       
Sbjct: 1070 CLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTG 1129

Query: 3333 YNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCL 3512
             N +QF A+ E    L  SFL  TTGI L   LDNG K+F   H      K +      +
Sbjct: 1130 VNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAI 1187

Query: 3513 TGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKK 3692
             GFAGSGKSR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK 
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247

Query: 3693 EKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFE 3872
            +KSKLD+I+LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FE
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307

Query: 3873 HDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGD 4052
            HDVD L G ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCID 1367

Query: 4053 KEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALT 4229
            + +P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALT
Sbjct: 1368 QGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1427

Query: 4230 RAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCG 4409
            RAK R+SFC + LGGMD+F +     L    L  ++I   +   M + NL+ ++ + GC 
Sbjct: 1428 RAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS 1487

Query: 4410 IDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNF 4589
             DE+DREERL GDPFLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNF
Sbjct: 1488 -DEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNF 1546

Query: 4590 DLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTF 4760
            D IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTF
Sbjct: 1547 DFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTF 1603

Query: 4761 WMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKK 4940
            WMAVKKRLVFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KK
Sbjct: 1604 WMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKK 1663

Query: 4941 LQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQF 5120
            L+KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQF
Sbjct: 1664 LEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 1723

Query: 5121 APWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYIL 5300
            APWCRYLE+QIR QLPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYIL
Sbjct: 1724 APWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYIL 1783

Query: 5301 SFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCR 5480
            SFE+HLMKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CR
Sbjct: 1784 SFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCR 1843

Query: 5481 YEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIV 5660
            YEWR GQPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIV
Sbjct: 1844 YEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIV 1903

Query: 5661 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFI 5840
            KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFI
Sbjct: 1904 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI 1963

Query: 5841 VTHLDKLKTKVRLLFEEQSSEEDI 5912
            VTH+DKLKT+V+ LF EQSS+EDI
Sbjct: 1964 VTHIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus]
          Length = 2002

 Score = 1296 bits (3354), Expect = 0.0
 Identities = 761/1970 (38%), Positives = 1122/1970 (56%), Gaps = 92/1970 (4%)
 Frame = +3

Query: 261  LFHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKSNQ-----NLEVLNHII 425
            L H HPF +T ENH+L +V P ++    +I   IK++K+  I   +     N++ +N +I
Sbjct: 69   LSHSHPFCKTVENHMLLNVLPDLMGNGKWIFSSIKKRKIDTITKKRGVQASNVDFVNKVI 128

Query: 426  DGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKSIFRFL 605
              +D  RY      H    +  S +  F     +    +K  F HDEIHHWS   +  FL
Sbjct: 129  CAKDFTRYDFDPKVHDVRTNMSSREFIFPNSYIRACHNNK-IFIHDEIHHWSADDMIYFL 187

Query: 606  NDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKII--RDRLFFFPDGVTSEGYEQPANL 779
            N+  P+ L+ SVVYPPE+L G    QNP +Y+F++   + +LFFFPD   SE YEQP  L
Sbjct: 188  NNSNPKMLICSVVYPPELLRGIKQPQNPSLYSFEVDEKKQKLFFFPDNCKSEAYEQPLRL 247

Query: 780  FWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIFKNR 959
             WLF+  Y+  G K +T+    S Y+HH+F+I PG   TES  FFNDFD +D+  + +NR
Sbjct: 248  DWLFEAAYIDTGVKRYTVKLIKSAYSHHMFQITPGEYVTESRRFFNDFDTIDLSIMHENR 307

Query: 960  FKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCKRLI 1139
            F+ YD  P+   H+ KVYSYLLCLKKPD+ESGLAKLRQ+  DD + +   FF + CK +I
Sbjct: 308  FRYYDYIPIKKTHLQKVYSYLLCLKKPDVESGLAKLRQMFDDDQDCRVVEFFSKFCKDII 367

Query: 1140 ERGTS-FGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVERGV 1316
            E+  + + ++G + LE      +  LP  + R  K W+  N+F+FL++L TL++ V   V
Sbjct: 368  EKHKNKWELYGFSWLETAKDSFIKSLPIQIARCFKRWEFKNIFDFLFNLQTLSVSVNTRV 427

Query: 1317 CYSHIMQNFP-FDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNY--SGD 1487
                 + +F  +    +  +  +D L            +     +  +++  F    +G 
Sbjct: 428  VTRTFVSSFTDYICEEVKENQSVDAL-MNSKWHGIGPEKTQKWNIRVMKMHAFEEFRNGS 486

Query: 1488 PRKKEIFFFLHKQLQSEREQVSTCEPYKAPP---RICWHSNDYRFLSFSKAVFPCEEGIE 1658
             ++  +  FL  + +  R++++  +  K      ++  ++ D  F+   K +F  E+  E
Sbjct: 487  VKRISVLLFLGFEAERMRKELNLKKKKKGEAHTLKLLKYTRDGPFIP-PKWLFEGEDEKE 545

Query: 1659 NGKHFDAYASTL--KRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSFDV 1832
              K+ D     +  K  +K   + +  Y+       +  E        E  G    + ++
Sbjct: 546  KKKNKDKEDIGIEEKEFIKVNLVTSGWYVKVDLLTMIREE--------EEVGKKVENNEI 597

Query: 1833 NELVDGVDHDKKNGL----KDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHGYQ 2000
            + L    + +K+  +     DA S   EG++ +E E  + +E   K G+ K   E     
Sbjct: 598  SILKSKKEEEKEKSIVHWPTDAKSTEKEGKKREEIEVGSPHEEVEK-GKKKIVQEC---P 653

Query: 2001 NGSEKKDKSDDLNY--------RNMFVEVKCHAAHGEP----INVPADGNCFFNAL---- 2132
            N    +  ++DL              + +  H AH         V  DGNCF+ AL    
Sbjct: 654  NEIAPRSDNEDLRVFITREDLKNGCEITIMDHDAHPMKKRRIAKVVGDGNCFYRALRLCL 713

Query: 2133 ---QHIFDIPIDPHQDREELASFLVENGFTRLGEHIR----PNGVWAEVETIYCYARFRN 2291
               +H +++       RE+L    + + F RL + I      +GV+   E +       N
Sbjct: 714  GHGEHEYNVT------REKLHKSALSSTFFRLEDDILHELITDGVYTSDELVKFIVNLAN 767

Query: 2292 VKIVVHQDDKCFEYGEGDE------------GHLLLRGNHFLALPMYSSKSNFSSVEDLP 2435
            +++ +   ++   +                  H+ L   HF A+     +  +   E+  
Sbjct: 768  IELRISTQNQLNHFSSYKPLIAKYENEPVCVVHMHLENEHFDAVLYAHDEDGYDQEEEGG 827

Query: 2436 IIYGERS-----ELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSS 2600
            +I  +R      E LNF+    ++     KGR++ F   + +IDYGH+ + Y  N     
Sbjct: 828  VIELKRGNFEDLEKLNFQ----NYKPTKLKGRKAFFFVNNLDIDYGHDKVRYKSN----- 878

Query: 2601 MDEIIKICDPD--GDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEF 2774
            + +I  IC  D    YNA LVQ ++EG ++  HRD+E  Y D+ IL++N+ G A FS   
Sbjct: 879  LYDIESICPKDLYNGYNACLVQIFEEGGNIPMHRDDEICYDDESILSINLKGSATFSYSD 938

Query: 2775 RGGVRDVEMHDASFLIMPKGMQKQARHKV-HAYTRRISITFRKHVRDLSGNSISTIEADS 2951
                +D+ M ++S+++M    QK+ +H V +  + RI++TFR+H+R ++   +  I  + 
Sbjct: 939  GNVTKDIRMMESSYIVMDGPFQKKFKHSVKNCSSGRINVTFRRHIRRMNMEPLVDINKEI 998

Query: 2952 DWKKKNMCLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKL 3131
                KN C+I+A+A+        V  AL   D++ W  + K D+G T+ D    A  L  
Sbjct: 999  K-AMKNRCMIDAIADNEGRSIPVVMNALLKKDRIFWDEWRKNDNGGTISDLIKAANDLAF 1057

Query: 3132 NLEVHCDEKISVMSFGHTLVKIQFRKGHYT------LLREFTNLPRSSFSHAQKKGNVNV 3293
            + EV   + +  ++    L   + + GH+       + +  T L R      + +G+   
Sbjct: 1058 SFEVDTMDGVKTLNNKGPLFTFELKDGHFRKSKIEKIGKVMTELERREMKR-ETEGSFG- 1115

Query: 3294 IKGLIEHISKVEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFF------- 3452
               ++E +S    +N + F  + E  +K+  SF  R TGI L ++  NG   F       
Sbjct: 1116 -DKVVELVSNSPGFNKLTFEVDVEYVMKIVHSFKNRMTGIALSDIYSNGESIFGEVIEEI 1174

Query: 3453 ----------KEAHDLAIETKVVSNLY--HCLTGFAGSGKSRVMQDWLVKRKKGNFIVVC 3596
                      K+  D + E++ ++     +C+ G  GSGKS  +Q +L K  KG F+V+ 
Sbjct: 1175 SRINKSSCSDKKKKDGSYESEHMTRKIELNCVIGLGGSGKSNSLQSFLKKNVKGKFLVIS 1234

Query: 3597 PRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFEL 3776
            PR+ L  DW+ K+G  P   +KV TFET ++     +++II+DELTLFPNGYLD L   L
Sbjct: 1235 PRLNLASDWISKVGCNP---NKVRTFETALRTNLKSIEVIIVDELTLFPNGYLDLLMCML 1291

Query: 3777 TQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQ 3956
             +     ++V IFD  Q+RYH+E+D +IL   HDVD +   KE+ YL+ S+R   NF   
Sbjct: 1292 GKEVKRKKIVCIFDIYQSRYHSESDTNILGQVHDVDRIVKNKEISYLHQSYRFISNFFDS 1351

Query: 3957 FWENLPMPSGTASDGKIWLVS---NPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTL 4127
            F++++ +        ++ +         I E  G K   D +LV SR EK+    +   +
Sbjct: 1352 FFKDVTINKKVEEKFEVRVYDCHLKAQIIEEEKGRKI--DAILVASRDEKNALSGKVEVM 1409

Query: 4128 TFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSE 4307
            TFGE+QGL+FN V IVLSE++   +E RW VALTRA+  + F + + GG+  FL +C ++
Sbjct: 1410 TFGESQGLSFNRVAIVLSENSEKQDEYRWMVALTRARISICFIVIYRGGLSVFLQNCGNK 1469

Query: 4308 LPRMYLRKEKINKVKLQRMTRAN-LVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQR 4484
            L   +++ ++ +  +L+ M+ A  + F+    G   DE+DREERL GDPFLKPFI+LG R
Sbjct: 1470 LIGAFIKGQECSLRRLRMMSVAKEITFKKEMIGGKSDEVDREERLEGDPFLKPFIFLGMR 1529

Query: 4485 INQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY 4664
            IN  E    E E  EP+ ++H+ I++ NFA   NFDLIR KE REYR     T+QFCD+Y
Sbjct: 1530 INSEEPEMCEVEIVEPKGKSHICIAQENFALSRNFDLIRSKELREYRFRESTTNQFCDNY 1589

Query: 4665 NIRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGG 4844
               G   +  T GP+RF++IYP+H ++DD+TFWMAV KRL F  E + R++L ++ ++G 
Sbjct: 1590 ERVGTGASKHTAGPLRFESIYPRHQSNDDLTFWMAVHKRLKFSNEAKERAKLKESSMVGQ 1649

Query: 4845 LLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFM 5024
            LLY N K    + F HD  LL +C NDFE+KKL KS+ATI +HSIRSD+DW +N +FLFM
Sbjct: 1650 LLYYNLKEKLNLSFSHDPGLLSQCINDFEVKKLSKSKATIANHSIRSDMDWPMNQIFLFM 1709

Query: 5025 KSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFD 5204
            KSQLCTK+EKQ+CDAKAGQTLACFQH++LV+FAP+CRY+E+ IR +LP+EIYIHSN+NF+
Sbjct: 1710 KSQLCTKYEKQYCDAKAGQTLACFQHMVLVKFAPYCRYMEAMIRSRLPDEIYIHSNKNFN 1769

Query: 5205 DLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLG 5384
            +LN WV KHF  + CVESDYEAFDA QDEYI+SFE+ +M+D G P+  I+ Y+DLKC LG
Sbjct: 1770 ELNDWVVKHFKGETCVESDYEAFDASQDEYIVSFEIAMMEDMGMPNWFINDYIDLKCTLG 1829

Query: 5385 CKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDF 5564
            CKLGHFA+MRFTGEFCTFLFNTLAN+AFT CRY+WR+GQPIAFAGDDMC+L+NL + + F
Sbjct: 1830 CKLGHFAIMRFTGEFCTFLFNTLANMAFTFCRYDWRKGQPIAFAGDDMCSLSNLEVSNKF 1889

Query: 5565 EEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAI 5744
            + IFEK+SL+AKV RTE PMFCGWRL++YGIVKEPELV+NRF IA E G V ECLENYAI
Sbjct: 1890 DSIFEKLSLQAKVIRTETPMFCGWRLSKYGIVKEPELVFNRFMIAKERGNVDECLENYAI 1949

Query: 5745 EVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQ 5894
            EVSYAYSL ERL+EVLKSE QI+YHQ  VRFI+  L+K+KTKV+ LF +Q
Sbjct: 1950 EVSYAYSLGERLFEVLKSEEQIEYHQCVVRFIIQRLEKIKTKVKDLFSDQ 1999


>gb|AKN08994.1| replicase [Caucasus prunus virus]
          Length = 1986

 Score = 1212 bits (3135), Expect = 0.0
 Identities = 752/1953 (38%), Positives = 1055/1953 (54%), Gaps = 74/1953 (3%)
 Frame = +3

Query: 261  LFHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS-----NQNLEVLNHII 425
            L H HPF +T ENH+L +V P ++    ++   +K+ KV  +       + N++++N  I
Sbjct: 69   LTHSHPFCKTLENHLLINVLPNLLGNGHWVFTSVKKAKVNSVIKLAGGVSNNVDIVNRCI 128

Query: 426  DGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKSIFRFL 605
              +D GRY           + LS+DH F +   + +   K  F HDE+HHWS  ++ +FL
Sbjct: 129  CAKDFGRYDFEPGSVDQKINILSKDHLFPKNFIRSVR-KKKIFIHDEVHHWSHLNMIQFL 187

Query: 606  NDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQPANLFW 785
             +     L+ SVV+PPE+LGG    QN  +Y F++  D+LFFFPDG  SE YEQP+NL W
Sbjct: 188  EETATPLLLCSVVFPPELLGGIKTPQNSALYGFQVDGDKLFFFPDGSRSEMYEQPSNLNW 247

Query: 786  LFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIFKNRFK 965
            LF+  Y+     T+T+    S YAHHLF+I  G   T+S  FF DF+ +DM  I K RFK
Sbjct: 248  LFEASYIHTSAGTYTVKMVGSFYAHHLFQISKGEKITDSVRFFADFNTIDMSVIHKERFK 307

Query: 966  RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCKRLI-E 1142
             YD+ P+   H+ K+Y+YLLCLKKPD+ES +AKLRQ++ D+ + +   FF    K+LI +
Sbjct: 308  YYDLIPIKKSHIEKIYTYLLCLKKPDVESAIAKLRQLMEDEQDCRVVEFFCTFAKKLITD 367

Query: 1143 RGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVERGVCY 1322
               +  +FG + L+      +  LP  +      W   N+F FL+ L T+ ++VE  V  
Sbjct: 368  TKGAINLFGDSFLQKAKDSFIMALPNSIASCFDRWHGLNIFHFLFTLDTIRVKVETKVVD 427

Query: 1323 SHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF------FNYSG 1484
                    FD + +   V    LP            V  G    V I        F+ S 
Sbjct: 428  RGYRTQM-FDDLEVKDDVMSTKLPEAIDTLFFGGQLVKGGDRRTVVIKSLDGLIKFSRSK 486

Query: 1485 DPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSNDYRFLSFSKAVFPCEEGIENG 1664
            +  K  I F L+  L     + + C   ++   +C  +ND             E G    
Sbjct: 487  NLYKMHIIFLLNPSLIRGNIR-NFCSNGRS---LC--ANDQ-----------LESGPLKT 529

Query: 1665 KHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSFDVNELV 1844
             H+     T     K  EM  +  ++     FL   ++F+E  ++      F   ++E+ 
Sbjct: 530  SHYKFKLPTF--FSKWSEMPFSRSLSYHEIPFLKSFVHFRENNIKRFVDPIFDMIIDEM- 586

Query: 1845 DGVDHDKKNGLKDAG------SNPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHGYQNG 2006
            + +D D  N  ++A       ++  +G+Q++  +   +   G K G+     E       
Sbjct: 587  NQLDLDIMNDGEEAAVEILDVNSNLDGKQSEHHDEEFVTPTGLKGGDGLVTIESIEVDPS 646

Query: 2007 SEKKDKSDDLNYRN---MFVEVKCHAAHG-EPI---------NVPADGNCFFNALQHIFD 2147
              +   S+          F    C    G EPI         +V  DGNCF  AL  +  
Sbjct: 647  EFRTPASELCGLATEPVSFPGDSCSVLMGNEPIAVADEYNICDVEGDGNCFMRAL--LTS 704

Query: 2148 IPIDPHQ---DREELASFLVENGFTRLGEH---IRPNGVWAEVETIYCYARFRNVKIVVH 2309
            I  D       R  L +   + G          I   G   +   I       N+ + + 
Sbjct: 705  IKGDDRTYPGSRSRLLNLSRQIGVNLTDSEEAQILREGEQFDEWMIMFTVNVMNLSLKIF 764

Query: 2310 QDDKCFEY-----------GEGDEGHLLLRGNHFLAL-----------------PMYSSK 2405
            Q D                 +  E  +L RGNHFL L                 P+ +S 
Sbjct: 765  QGDVSIPRTLSPKLVNTHGNDAKEIAILHRGNHFLGLLKKCTSESGAHDFDGNQPVEASS 824

Query: 2406 SNFSSVEDLPIIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRN 2585
             N    E     + +  EL       S F     K R + F S S  IDYGHN + Y  N
Sbjct: 825  DNHFD-ETFETGFNDFEELRKVVGSISMFKKTPLKNRDAFFFSESKSIDYGHNRIKYAHN 883

Query: 2586 GWLSSMDEIIKICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFS 2765
             W + +D+++       DYNA L+Q Y EG  +G HRDNEKVY +D IL++N++G A F 
Sbjct: 884  HW-NGVDQLLP-SSLRNDYNAMLIQVYKEGGSIGMHRDNEKVYDNDSILSINLNGDALFQ 941

Query: 2766 LEFRGGVR-DVEMHDASFLIMPKGMQKQARHKVHAYTR-RISITFRKHVRDLSGNSISTI 2939
            +E +   R    M D  + +M +  Q + RH V   T  RI++TFRKHVR+     I   
Sbjct: 942  IEAKSSKRYSFRMKDGDYFLMKRDFQAKFRHGVQGATEGRINVTFRKHVRNSRNEPIYLG 1001

Query: 2940 EADSDWKKKNMCLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAE 3119
             +    K KN+CL+ +++   K     +  AL   +K  W++F +   G TL D +  AE
Sbjct: 1002 IS----KFKNICLMRSLSILEKRPLYDILLALIKKNKNYWTSFLEFGVGGTLADLNQAAE 1057

Query: 3120 ALKLNLEVHCDEKISVMSFGHTLVKIQFRKGHYTLLREFT-NLPRSSFSHAQKKGNVNVI 3296
             L    E++ +EK         + ++     H+++ RE + N+  +  + ++ K   +  
Sbjct: 1058 DLSFRFELYMNEKWIAGGNRGPIYRLNLSDDHFSVHRELSGNVEDTQLNFSKAKSKQSNF 1117

Query: 3297 KGLIEH----ISKVEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAH 3464
                +     +  +EH N   F    +    LR+SFL RTTG +L +     G   +   
Sbjct: 1118 SSSDDDNSFDLDSIEHVNKSLFEPLNDAAELLRQSFLNRTTGKILSDAFGENGAHLRRIR 1177

Query: 3465 DLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSE 3644
             +  +      +Y    GFAGSGKS  +Q  L    K  F+V+CPRV L  DW  K+   
Sbjct: 1178 IVKSDDPFPEEVYFSC-GFAGSGKSLSLQSKLKSNFKLKFLVICPRVELKEDWERKVKCS 1236

Query: 3645 PRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFEL-TQMKSCAEVVLIFDP 3821
               +HKVCTFE  + +  S+++LI++DEL LFP GYLD + F+L T+     +V+L+FDP
Sbjct: 1237 ---SHKVCTFEVALLQNLSRVELIVIDELGLFPRGYLDLMIFKLRTEKNFKGKVMLLFDP 1293

Query: 3822 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 4001
            LQARYH+++D   L   H+ D +T   ++ YL+ S+RL+K F   F+ ++ + +  + + 
Sbjct: 1294 LQARYHSDSDERFLHEIHECDRITSGAKINYLFESWRLSKKFFGNFFVDIELRNSGSVNY 1353

Query: 4002 KIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4178
            ++    N          +  P D++LV SR EK+ +  +   LTFGEAQGLT  H CIVL
Sbjct: 1354 ELDFFDNHIVAANEAKKRGFPIDLILVASRDEKNSFAGKVNVLTFGEAQGLTVKHSCIVL 1413

Query: 4179 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4358
            SE     ++ RW VALTRAKE++SF  SH  G+  F+ S        +L        ++ 
Sbjct: 1414 SEYAEKQDDYRWVVALTRAKEKISFITSHRSGLTGFMSSMIGRPIHAFLTGLPFTSNRMN 1473

Query: 4359 RMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRC 4538
             M    LV      G G DE+DRE+RL GDPFLKPF++LGQRIN  E   IEPE  EP+ 
Sbjct: 1474 WMVNCELVECHRATG-GRDEVDREDRLEGDPFLKPFVFLGQRINSEEYEIIEPEVIEPKG 1532

Query: 4539 QTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMRFK 4718
            + HL IS+ N+A   NFDLIR KE RE +   L T+QFC  YN  G + +     P+RF+
Sbjct: 1533 RVHLCISQENYALARNFDLIRAKEYREAKLMGLETNQFCHDYNRVGAQGSRHVASPLRFE 1592

Query: 4719 AIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQ 4898
            +I+P+H + DD+TFWMAVKKRL F EE   R++L D++ +G LLY N K    + F  DQ
Sbjct: 1593 SIFPRHRSDDDLTFWMAVKKRLRFSEEFLERAKLKDSYSVGNLLYQNLKEKLSLSFSWDQ 1652

Query: 4899 WLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAG 5078
             LL++C NDFE KKL KS+AT+ +HSIRSD+DW+++ +FLFMKSQLCTK+EKQ+ DAKAG
Sbjct: 1653 GLLDECLNDFETKKLLKSKATLANHSIRSDIDWSMDKIFLFMKSQLCTKYEKQYVDAKAG 1712

Query: 5079 QTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVES 5258
            QTLACF HL+L +FAP+CRY+E  +R  L EEIYIHSN+NF+DLN WV K F     VES
Sbjct: 1713 QTLACFSHLVLAKFAPYCRYMEKMLRRNLKEEIYIHSNKNFNDLNDWVVKFFEEGEKVES 1772

Query: 5259 DYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTF 5438
            DYEAFDA QD Y+L+FE+ +M+D G P+  I+ Y+DLKC LGCKLGHFA+MRFTGEF TF
Sbjct: 1773 DYEAFDASQDHYVLAFEVCVMEDMGLPNWFINDYIDLKCTLGCKLGHFAIMRFTGEFSTF 1832

Query: 5439 LFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTER 5618
            LFNTLAN+AFT  RYE     PIAFAGDDMC L    +   FE++  K+SLKAKV RTE 
Sbjct: 1833 LFNTLANMAFTFARYECDHKTPIAFAGDDMCMLKACKVSDKFEDVLSKLSLKAKVIRTEM 1892

Query: 5619 PMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKS 5798
            PMFCGW L++YGIVKEPELV+NRF +A + G + ECLENYAIEVSYAYSL E+LYEVLK 
Sbjct: 1893 PMFCGWNLSRYGIVKEPELVFNRFMVAKKRGNIDECLENYAIEVSYAYSLGEKLYEVLKR 1952

Query: 5799 ERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQS 5897
            E Q++YHQA VRFIV  LDKLKTKV+ LF +Q+
Sbjct: 1953 EEQVEYHQAVVRFIVQRLDKLKTKVKDLFSDQN 1985


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  944 bits (2440), Expect = 0.0
 Identities = 466/618 (75%), Positives = 518/618 (83%), Gaps = 3/618 (0%)
 Frame = +3

Query: 4068 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4247
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4248 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4427
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ + GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4428 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4607
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4608 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4778
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4779 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4958
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 4959 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 5138
            TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 5139 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5318
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDI VESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHL 416

Query: 5319 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5498
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 5499 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5678
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 5679 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5858
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 5859 LKTKVRLLFEEQSSEEDI 5912
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  940 bits (2430), Expect = 0.0
 Identities = 464/618 (75%), Positives = 517/618 (83%), Gaps = 3/618 (0%)
 Frame = +3

Query: 4068 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4247
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4248 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4427
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ + GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4428 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4607
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4608 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4778
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4779 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4958
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 4959 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 5138
            TI+SHSIRSD+DWALNDVFLFMKSQL TK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIRSHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 5139 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5318
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDICVESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHL 416

Query: 5319 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5498
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 5499 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5678
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 5679 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5858
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 5859 LKTKVRLLFEEQSSEEDI 5912
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus]
 emb|CDF66416.2| replication-associated polyprotein [Apricot vein clearing associated
            virus]
          Length = 1679

 Score =  943 bits (2437), Expect = 0.0
 Identities = 530/1178 (44%), Positives = 717/1178 (60%), Gaps = 44/1178 (3%)
 Frame = +3

Query: 2505 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2684
            ++GR S F + S EIDYGHNG  Y    W + +D+ I     D  +NA LVQ YD+GS +
Sbjct: 511  FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567

Query: 2685 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2864
            G+H+DNE+ Y   PILTVN  G+A F  EF  G     + D   +++     ++ RH+V 
Sbjct: 568  GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLRKKRHRVT 623

Query: 2865 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 3035
            + +  RIS+TFR+HV  ++ + +    +++    KN C+I AVA  L   S+ +  K   
Sbjct: 624  SLSDSRISLTFRRHVCRMNKSPLEFF-SNNGKLGKNKCIIHAVAMALGQTSNTVANKIVA 682

Query: 3036 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 3206
            +  D ++      +D          +   + L+  +  +++   M      L+K  F   
Sbjct: 683  QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 739

Query: 3207 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3386
              H  +L +  N             ++        +    ++   IQ+ A+ E+ +KL  
Sbjct: 740  DEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 799

Query: 3387 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3542
            SFL  TTG +L E++  G +FF     +             + GFAGSGKS        R
Sbjct: 800  SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 859

Query: 3543 VMQD-WLVKRKKG--------------------NFIVVCPRVTLMHDWLFKLGSEPRDAH 3659
            + ++  L K KKG                    +  ++ PR  L  DW  KLG    +  
Sbjct: 860  ISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 919

Query: 3660 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3839
             V TFE   K   SK+ LI++DELTLFPNGY+D L F +       +++LIFDPLQARY 
Sbjct: 920  SVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYD 979

Query: 3840 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPM--------PSGTAS 3995
            +  D  IL  EHDVD + G+ E+ Y+Y S R         +E+L           +G  +
Sbjct: 980  SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKNEVDAESRETGKGA 1039

Query: 3996 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 4172
              +  + +N  +++    ++  P DVLLV S  E  ++ +  +T+TFGE+QGLT +H  I
Sbjct: 1040 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1099

Query: 4173 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4352
            +LSE++A S++ RW VALTRA+++V+F   HL G++ FL + ++ L    + K  + K +
Sbjct: 1100 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKR 1159

Query: 4353 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4532
            L  M RA L +   +   G DE+DRE+RL GD FLK  I+LGQR    E   +EP   + 
Sbjct: 1160 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKE 1219

Query: 4533 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4712
              +TH F+ + NFAQCYNFD IR KE RE+R    VT+QF D+Y I        T GP+R
Sbjct: 1220 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKHTAGPLR 1279

Query: 4713 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 4892
            F+AIYP+H   DD+TF MAV KRL F  E + R +L  AH  G +L++N  +   ++F  
Sbjct: 1280 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1339

Query: 4893 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 5072
            D  L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1340 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1399

Query: 5073 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 5252
            AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKKH   D+CV
Sbjct: 1400 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCV 1459

Query: 5253 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 5432
            ESDYEAFDA QD+YILSFE+ +M+    P+++I AY+DLK  LGCKLGHFA+MRFTGEF 
Sbjct: 1460 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1519

Query: 5433 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 5612
            TFLFNTLAN+AFTMCRYEW  G PIAFAGDDMCAL NL +   F  +FEKISLKAK + T
Sbjct: 1520 TFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQIT 1579

Query: 5613 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 5792
            E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1580 EVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1639

Query: 5793 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5906
            K E Q++YHQA VRFIV HL  L+TKV+ LF EQS+E+
Sbjct: 1640 KREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  257 bits (656), Expect = 1e-64
 Identities = 139/348 (39%), Positives = 201/348 (57%), Gaps = 10/348 (2%)
 Frame = +3

Query: 261  LFHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKSNQN---LEVLNHIIDG 431
            L H HPFS+  ENHIL +V PG +   S++   IK  KV+ + +      L+ +N ++  
Sbjct: 71   LAHSHPFSKMLENHILLNVLPGHITG-SWVFSSIKPSKVESLATKGKKSVLKTINRLLCA 129

Query: 432  RDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKILGLHKSFFFHDEIHHWSKKSI 593
            +D GRY   V   S    S+S +        F R  K      ++   HDE+HHW+   +
Sbjct: 130  KDFGRYD--VDTDSSVIRSISREAPDILPEPFVRAVKG-----RNVMIHDEVHHWTLDDM 182

Query: 594  FRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR-DRLFFFPDGVTSEGYEQP 770
              FL+  +P R VFSVVYP E+L G   SQNPKMY F+  + D++ FFPDG  SEGYEQ 
Sbjct: 183  LGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGRASEGYEQR 242

Query: 771  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 950
            ANL WLF   +       WT+ R  S Y+HHLFE+VPG   T+   FFNDF+ +D+  IF
Sbjct: 243  ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 302

Query: 951  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 1130
            K+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++++  +FF  L  
Sbjct: 303  KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 362

Query: 1131 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFL 1274
            R++     F +F  +++     K ++  P +L+    TWK  N  + L
Sbjct: 363  RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGNFIKKL 410


>ref|YP_009357235.1| replication-associated polyprotein [Watermelon virus A]
 gb|ARH01897.1| replication-associated polyprotein [Watermelon virus A]
          Length = 1826

 Score =  945 bits (2443), Expect = 0.0
 Identities = 549/1210 (45%), Positives = 748/1210 (61%), Gaps = 88/1210 (7%)
 Frame = +3

Query: 2547 IDYGHNGMVYPRNGWLSSMDEIIKICDPD------GDYNAALVQFYDEGSDLGYHRDNEK 2708
            +DYGHNG++Y +N      DE +++          G +N  L+Q Y +GS + +H D+E 
Sbjct: 629  LDYGHNGIMYKKN----LADERVRVFMEKVRETYKGKWNTMLIQRYKKGSSINFHSDDEP 684

Query: 2709 VYM-DDPILTVNMSGIAKFSLEFRGGVRD--------------VEMHDASFLIMPKGMQK 2843
            + M    +LT+N+ G A F +  +   +               + +++     M +G Q+
Sbjct: 685  MIMRGSSVLTMNVEGSATFRIVEKENEKKKKKKKENHPCPDEFLSLNNFCVFKMKEGFQE 744

Query: 2844 QARHKVHAYTR-RISITFRK-----------------HVRDLSGNSISTIEADSDWK--K 2963
              RH +  ++  R+SITFR+                   ++    + S ++A+S+ +  +
Sbjct: 745  LFRHSIDVHSEGRMSITFREIKPTFIFKGKEKEDQQEAAKENVEKAGSRLKAESEKRTIE 804

Query: 2964 KNMCLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEV 3143
            K  CL+ A+A     + + +   L + +++  S++   + GA       +A +LK+ + V
Sbjct: 805  KKKCLLTALATFFHVEKVFLANKLAAQNELL-SDWINSNMGADSTIIMAIANSLKMRINV 863

Query: 3144 HCDEKISVMSFGHTL-----VKIQFRKGHYTLLREFTNLPRSSFSHAQK----------- 3275
              D + S    G+ +     V I     H+TLL     L     S+AQK           
Sbjct: 864  FGDIEKSFEPDGYDIPESKIVDILLENEHFTLLNRSDVL---RMSNAQKCLMGLEDRMEV 920

Query: 3276 ----KGNVN--------VIKGLIEHISKVEHYNAIQFNAEAEKFLKLRKSFLQRTTGILL 3419
                +GN +        ++  +IE I      + ++F A+ E  L L KSFL  +TGI L
Sbjct: 921  NIKVRGNESGGNNRRQKLVNNVIEEILNFPSSSEVKFLAKKENALILMKSFLSMSTGICL 980

Query: 3420 GEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKG-NFIVVC 3596
             E + NG  F K +     E  ++S+L   ++GF GSGKSR +Q+ + ++K+G  F ++ 
Sbjct: 981  SEHVHNGKDFMKLSASKR-EGDIISDLI-VVSGFGGSGKSRSLQELIKEKKRGVRFTIIS 1038

Query: 3597 PRVTLMHDWLFKLGSE----PRDAHK-----VCTFETFIKKEKSKLDLIILDELTLFPNG 3749
            PR  L  DW  K+ S+      DA K     + TFE+ +K    K D+I+LDEL+L+PNG
Sbjct: 1039 PRKNLAEDWHEKVNSDLDAKENDAEKNGKVKIKTFESALKMNLGKSDVIVLDELSLYPNG 1098

Query: 3750 YLDWLTFELTQMK-SCAEVVLIFDPLQARYHNEADAHILDFEHDVDCL-TGEKELKYLYG 3923
            YLD L   L+ +  +   +V+I  P QARYH++ D HIL F+H++D +  G   + YL  
Sbjct: 1099 YLDLLIHSLSGLNVNMPRLVVIGCPFQARYHSKLDEHILTFDHEIDRIFKGNSAINYLAF 1158

Query: 3924 SFRLNKNFHAQFWENLPMPSGTASDGKIWLVSN-PDSIRESFGDKEQPDVLLVDSRVEKS 4100
            S RL   F+  F     +      +G I +  +  ++I  S   ++  D++LVDSR EK 
Sbjct: 1159 SHRLGTGFNCVFEGIECLGESEEMEGSINVFKSFNNAIAWSEKQEQFFDLILVDSREEKK 1218

Query: 4101 VYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMD 4280
             Y      LTFGEAQGLT N+  IVLSE++A S E RW VALTRA+  +SF + HL G++
Sbjct: 1219 AYSGLINVLTFGEAQGLTVNNSLIVLSENSANSEEFRWVVALTRARRTLSFLVVHLDGIE 1278

Query: 4281 DFLVSCKSELPRMYLRKEKINKVKLQRMTRANL---VFEDMEFGCGIDEMDREERLSGDP 4451
             F+     ++    LR EK+N  +  +    NL    F +++ G G DE DRE RL GDP
Sbjct: 1279 GFMAETDGKMINALLRGEKVNVKEFSKKKGFNLNFIEFNEIKNG-GNDEQDRELRLEGDP 1337

Query: 4452 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4631
            +LKPFI L QR N  EV+  E   +E + +THL+++EPNF+Q  NFDLI  KE RE+R  
Sbjct: 1338 WLKPFINLHQRENVEEVIVDEVFIKEDKEKTHLYLAEPNFSQALNFDLILDKEVREFRLG 1397

Query: 4632 MLVTDQFCDSYNIR---GPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4802
               T+QF D+YN+    G R N     P R KAIYP+H   DD+TF MAVKKRL F E  
Sbjct: 1398 EEQTNQFTDNYNVNHWGGKRIN---AAPFRHKAIYPRHEMKDDLTFKMAVKKRLRFEEPA 1454

Query: 4803 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 4982
             N  +  +A   G L+Y +FK  F I+++HDQ LLE+CRNDFE+KKLQKS  TIK HS R
Sbjct: 1455 VNYQKYMEARCTGRLMYEHFKEMFGIEWNHDQALLEECRNDFEVKKLQKSAETIKCHSNR 1514

Query: 4983 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 5162
            SD DW LND+FLFMK+QLCTK+EKQF +AKAGQTLACFQHL+L  FAP+CRY+E Q+   
Sbjct: 1515 SDCDWYLNDIFLFMKTQLCTKYEKQFVEAKAGQTLACFQHLLLAHFAPYCRYIEKQLTRM 1574

Query: 5163 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 5342
            LP+EIYIHS++NFD+LN WV KHF  DICVESDYEAFDA QD+YIL+FEM LMKDAG PD
Sbjct: 1575 LPDEIYIHSSKNFDELNEWVIKHFQNDICVESDYEAFDASQDQYILAFEMALMKDAGMPD 1634

Query: 5343 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 5522
             ++D Y+ LKC+LGCKLG FA+MRFTGEFCTFLFNTLAN+AFT+ RYEWR G PIAFAGD
Sbjct: 1635 HILDDYLKLKCELGCKLGKFAIMRFTGEFCTFLFNTLANMAFTISRYEWRRGMPIAFAGD 1694

Query: 5523 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 5702
            DMC+L+NL L   FE++F+KISLKAK + TE PMFCGWRL+++GIVKEPELV+NRF +A+
Sbjct: 1695 DMCSLSNLKLSDRFEDLFDKISLKAKTQWTEEPMFCGWRLSRHGIVKEPELVFNRFMVAL 1754

Query: 5703 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 5882
            EEGKV  CLENYAIEVSYAY L E+LYEVLKSERQI++HQA VRFIV HL+KLKT  R L
Sbjct: 1755 EEGKVELCLENYAIEVSYAYRLGEKLYEVLKSERQIEFHQAVVRFIVLHLNKLKTSAREL 1814

Query: 5883 FEEQSSEEDI 5912
            FEEQSS+E++
Sbjct: 1815 FEEQSSDEEL 1824



 Score =  211 bits (537), Expect = 1e-50
 Identities = 125/354 (35%), Positives = 188/354 (53%), Gaps = 7/354 (1%)
 Frame = +3

Query: 267  HFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKSNQN---LEVLNHIIDGRD 437
            H HP S+T EN++L  + P  +         I+ KKV  +    N   L   N IID +D
Sbjct: 71   HSHPVSKTLENYMLYVLLPVYIGVGRINMVSIQRKKVLNLSLKMNYTELNTFNRIIDSKD 130

Query: 438  VGRY---KEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKSIFRFLN 608
            + RY   ++V         S +  +KF     +    +   F HDE HHWS   I  F+ 
Sbjct: 131  ISRYGADEDVFNDERKELFSSTFMNKF-----RTSKAYDCIFIHDECHHWSLNDITYFIE 185

Query: 609  DFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLF-FFPDGVTSEGYEQPANLFW 785
            + +P+R++ SVVYPPE+L G  +S N   Y F+I  D  F F+PDGV +E Y Q  NL W
Sbjct: 186  EVKPKRMLVSVVYPPELLLGIESSLNKLAYDFEINDDGTFSFYPDGVKTEAYNQRVNLDW 245

Query: 786  LFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIFKNRFK 965
            L K  YL   +  +TI    +  AHH+FEI  GR  T++   F +F+ +D+  + + R++
Sbjct: 246  LMKGSYLRTNNGVYTIRLLKTLAAHHMFEITKGRFVTDNPRHFEEFECIDLSFLKQRRWR 305

Query: 966  RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCKRLIER 1145
            R +   +    + KVY+YL CLKKPD ESGLAKLRQI+G+  ++K  +FFE L   L++ 
Sbjct: 306  RNEYIFIKKTWLTKVYTYLQCLKKPDKESGLAKLRQIMGEAQDLKVTMFFENLMPELLQ- 364

Query: 1146 GTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVE 1307
            G    +F   L E +      + P  + R +  +K  N FE L++   L ++++
Sbjct: 365  GCQKKIFDVPLFEKVVSSFWKLFPMTIQRLSSDFKDKNFFEVLFNCENLRVKIK 418


>gb|AQQ73540.1| replicase [Apricot vein clearing associated virus]
          Length = 2022

 Score =  943 bits (2437), Expect = 0.0
 Identities = 534/1179 (45%), Positives = 715/1179 (60%), Gaps = 45/1179 (3%)
 Frame = +3

Query: 2505 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2684
            ++GR S F + S EIDYGHNG  Y    W + +D+ I     D  +NA LVQ YD+GS +
Sbjct: 853  FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 909

Query: 2685 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2864
            G+H+DNE+ Y   PILTVN  G+A F  EF  G     + D   +++     K+ RH+V 
Sbjct: 910  GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLKKKRHRVT 965

Query: 2865 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 3035
            + +  RIS+TFR+HV  ++ + +     D    K N C+I AVA  L   S+ +  K   
Sbjct: 966  SLSDNRISLTFRRHVCRMNKSPLEFFSNDGKLGK-NKCIIHAVAMALGQTSNTVANKIVA 1024

Query: 3036 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 3206
            +  D ++      +D          +   + L+  +  +++   M      L+K  F   
Sbjct: 1025 QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 1081

Query: 3207 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3386
              H  +L +  N             ++        +    ++   IQ+ A+ E+ +KL  
Sbjct: 1082 DEHMMVLSDVPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 1141

Query: 3387 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3542
            SFL  TTG +L E++  G +FF     +             + GFAGSGKS        R
Sbjct: 1142 SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 1201

Query: 3543 VMQD-WLVKRKK-----------------GNFIVVC---PRVTLMHDWLFKLGSEPRDAH 3659
            + ++  L K KK                 GN   +C   PR  L  DW  KLG    +  
Sbjct: 1202 ISREVHLAKEKKRMGKGNGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 1261

Query: 3660 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3839
             V TFE F K   SK+ LI++DELTLFPNGY+D L F +       +++LIFDPLQARY 
Sbjct: 1262 SVTTFEIFFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPNCKLILIFDPLQARYD 1321

Query: 3840 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPS---------GTA 3992
            +  D  IL  EHDVD + G+ E+ Y+Y S R         +E+L   +         G  
Sbjct: 1322 SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKKNEVDAESREMGKG 1381

Query: 3993 SDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVC 4169
            +  +  + +N  +++    ++  P DVLLV S  E  ++ +  +T+TFGE+QGLT +H  
Sbjct: 1382 AKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAA 1441

Query: 4170 IVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKV 4349
            I+LSE++A S++ RW VALTRA+++V+F   HL G++ FL + ++ L    + K  + K 
Sbjct: 1442 ILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKK 1501

Query: 4350 KLQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEE 4529
            +L  M RA L +   +   G DE+DRE+RL GD FLK  I+LGQR    E   +EP   +
Sbjct: 1502 RLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAK 1561

Query: 4530 PRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPM 4709
               +TH F+ + NFAQCYNFD IR KE RE+R    VT+QF D+Y I        T GP+
Sbjct: 1562 EDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGYRVTNQFIDNYEIVQHGQKKHTAGPL 1621

Query: 4710 RFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFH 4889
            RF+AIYP+H   DD+TF MAV KRL F  E + R +L  AH  G +L++N  +   ++F 
Sbjct: 1622 RFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFT 1681

Query: 4890 HDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDA 5069
             D  L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DA
Sbjct: 1682 WDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDA 1741

Query: 5070 KAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDIC 5249
            KAGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKK+   D+C
Sbjct: 1742 KAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLC 1801

Query: 5250 VESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEF 5429
            VESDYEAFDA QD+YILSFE+ +M+    P+++I AY+DLK  LGCKLGHFA+MRFTGEF
Sbjct: 1802 VESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEF 1861

Query: 5430 CTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVER 5609
             TFLFNTLAN+AFTMCRYEW  G PIAFAGDDMCAL NL +   F  +FEKISLKAK + 
Sbjct: 1862 STFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQI 1921

Query: 5610 TERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEV 5789
            TE PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++
Sbjct: 1922 TEVPMFCGWRLSKFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDI 1981

Query: 5790 LKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5906
            LK E Q++YHQA VRFIV HL  L+TKV+ LF EQS E+
Sbjct: 1982 LKREEQLEYHQAVVRFIVKHLGDLRTKVKDLFAEQSDED 2020



 Score =  273 bits (698), Expect = 2e-69
 Identities = 151/377 (40%), Positives = 216/377 (57%), Gaps = 12/377 (3%)
 Frame = +3

Query: 261  LFHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKSNQN---LEVLNHIIDG 431
            L H HPFS+  ENHIL +V PG +   S++   IK  KV+ + +      L+ +N ++  
Sbjct: 70   LAHSHPFSKMLENHILLNVLPGHITG-SWVFSSIKPSKVESLATKGKKSVLKTINRLLCA 128

Query: 432  RDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKILGLHKSFFFHDEIHHWSKKSI 593
            +D GRY   V   S    S+S +        F R  K      ++   HDE+HHW+   +
Sbjct: 129  KDFGRYD--VDTDSSVIRSISREAPDILPEPFIRAVKG-----RNVMIHDEVHHWTLDDM 181

Query: 594  FRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR-DRLFFFPDGVTSEGYEQP 770
              FL+  +P R VFSVVYP E+L G   SQNPKMY F+  + D++ FFPDG  SEGYEQ 
Sbjct: 182  LGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQR 241

Query: 771  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 950
            ANL WLF   +       WT+ R  S Y+HHLFE+VPG   T+   FFNDF+ +D+  IF
Sbjct: 242  ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 301

Query: 951  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 1130
            K+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++++  +FF  L  
Sbjct: 302  KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 361

Query: 1131 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1310
            R++     F +F  +++     K ++  P +L+    TWK  N F+FL  L  L +EV  
Sbjct: 362  RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEVPT 421

Query: 1311 GVCYSHIMQNFP--FDV 1355
             +  S   +NF   FDV
Sbjct: 422  EIVDSTFERNFVSLFDV 438