BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038234
         (920 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424...    99   9e-51
ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...    98   4e-50
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]    96   4e-49
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   100   2e-48
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...    94   2e-48
dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subte...    96   6e-48
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   103   1e-47
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   100   4e-47
dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt...   100   4e-47
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   100   4e-47
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   103   2e-46
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]   100   5e-45
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    88   1e-44
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...    94   1e-44
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               150   9e-37
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   148   4e-36
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   146   2e-35
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   144   6e-35
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   142   3e-34
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   142   3e-34

>ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424043 [Ziziphus jujuba]
          Length = 1270

 Score = 98.6 bits (244), Expect(3) = 9e-51
 Identities = 42/72 (58%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
 Frame = +1

Query: 376  YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVT 552
            +   PDY FLK FG AC+P+LRPF   K QF + KC F+GYS  HKGY+C+S SG+IY+ 
Sbjct: 847  FKKVPDYDFLKVFGSACFPFLRPFQNHKFQFHTEKCVFIGYSDDHKGYKCMSSSGKIYIA 906

Query: 553  RTVSFNEMEFPY 588
            R+V+FNE EFP+
Sbjct: 907  RSVNFNEKEFPF 918



 Score = 80.9 bits (198), Expect(3) = 9e-51
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +2

Query: 188 HSCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLN 361
           HSCPY H QNG+ ERKH+HIV VGLSFLA +++P  +W +AF   V+ INRLPT  L+
Sbjct: 781 HSCPYMHQQNGRAERKHRHIVEVGLSFLAQAHMPLLYWWEAFTSAVYVINRLPTAILD 838



 Score = 71.6 bits (174), Expect(3) = 9e-51
 Identities = 29/64 (45%), Positives = 42/64 (65%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY+YY HF+DD++ +T IYP+  K EA+   KHF  +VE  F + ++  Q DWGGE+R  
Sbjct: 709 GYRYYIHFIDDYSRFTWIYPMTVKSEALFIFKHFHVMVERLFDTKLKVVQSDWGGEYRCF 768

Query: 184 ATFL 195
             +L
Sbjct: 769 LPYL 772


>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score = 97.8 bits (242), Expect(3) = 4e-50
 Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +1

Query: 388 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVS 564
           PDY  +K FGC+CYPYLRP+N  KLQFRS +C FLGYS  HKGY+CL  SGR+Y++  V+
Sbjct: 676 PDYTMMKVFGCSCYPYLRPYNHHKLQFRSERCVFLGYSSLHKGYQCLHLSGRVYISNHVT 735

Query: 565 FNEMEFPY 588
           F+E  FP+
Sbjct: 736 FDESFFPF 743



 Score = 79.7 bits (195), Expect(3) = 4e-50
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = +2

Query: 188 HSCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNI 367
           H CPY H QN K ERKH+HIV  GL+ LA ++LP  FW +AF    + INRLPTP LNN 
Sbjct: 606 HPCPYIHHQNRKIERKHRHIVETGLTLLAQAHLPLKFWWNAFHTATYLINRLPTPILNNK 665

Query: 368 FP 373
            P
Sbjct: 666 SP 667



 Score = 71.2 bits (173), Expect(3) = 4e-50
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY YY   +DD+T YT I+PL TK + ++A   FK+++E      I+  Q DWGGEFRP 
Sbjct: 534 GYSYYLSILDDYTRYTWIFPLTTKSKTLSAFIDFKNMIENCLNLRIKCLQTDWGGEFRPF 593

Query: 184 ATFLS 198
            ++LS
Sbjct: 594 VSYLS 598


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score = 96.3 bits (238), Expect(3) = 4e-49
 Identities = 44/68 (64%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
 Frame = +1

Query: 388 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVS 564
           P Y  LK FGC CYP LRPFN  KLQFRS  C FLGYSL HKGY+CLSP+G I ++R V 
Sbjct: 723 PSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVI 782

Query: 565 FNEMEFPY 588
           F+E  FP+
Sbjct: 783 FDEXAFPF 790



 Score = 81.6 bits (200), Expect(3) = 4e-49
 Identities = 37/65 (56%), Positives = 46/65 (70%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCPYTH QNG  ERKH+HIV  G++ LA ++LP+ +W +AF   V+ INRLPTP L N  
Sbjct: 654 SCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKS 713

Query: 371 PSMVL 385
           P  VL
Sbjct: 714 PLEVL 718



 Score = 67.8 bits (164), Expect(3) = 4e-49
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           G++YY HF+D ++ +T IY L+ K EA     HFKS VE Q    I+A Q DWGGE+R  
Sbjct: 581 GHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDWGGEYRSF 640

Query: 184 ATFLS 198
             +L+
Sbjct: 641 TQYLT 645


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 1242

 Score = 99.8 bits (247), Expect(3) = 2e-48
 Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
 Frame = +1

Query: 349 PYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL 525
           P    Y   +   PDY  LK FGCACYP L+P+NQ KLQF +T+C FLGYS +HKGY+C+
Sbjct: 646 PNESPYTLVFKKEPDYTALKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCV 705

Query: 526 SPSGRIYVTRTVSFNEMEFPY 588
           +  GR++V+R V FNE  FP+
Sbjct: 706 NSHGRVFVSRHVVFNENHFPF 726



 Score = 72.8 bits (177), Expect(3) = 2e-48
 Identities = 29/61 (47%), Positives = 43/61 (70%)
 Frame = +1

Query: 1   AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
           + +KYY HF+DDF+ +T I+PL+ K E I A   FK++VE QF   I+  +CD GGE++P
Sbjct: 516 SNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCDGGGEYKP 575

Query: 181 I 183
           +
Sbjct: 576 V 576



 Score = 70.5 bits (171), Expect(3) = 2e-48
 Identities = 30/61 (49%), Positives = 41/61 (67%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCPYT  QNG+ ERKH+H+  +GL+ LA + +P S+W +AF   V+ INRLP+    N  
Sbjct: 590 SCPYTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWWEAFSTAVYLINRLPSSVNPNES 649

Query: 371 P 373
           P
Sbjct: 650 P 650


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score = 94.0 bits (232), Expect(3) = 2e-48
 Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +1

Query: 364 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 540
           Y S +  +PDY FL+ FGC+C+ +LR +N+ K QF ++KC FLGYS  HKGY+CL PSGR
Sbjct: 748 YESLFQLSPDYKFLRVFGCSCFLFLREYNKHKFQFHTSKCVFLGYSPLHKGYKCLHPSGR 807

Query: 541 IYVTRTVSFNEMEFPY 588
            Y+   V F+E  FPY
Sbjct: 808 TYIASHVLFDESSFPY 823



 Score = 75.9 bits (185), Expect(3) = 2e-48
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = +2

Query: 188 HSCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLN 361
           H CPYTH+QNG  ERKH+HI  +GL+ LA + +P  FW D+F    + INRLPTP L+
Sbjct: 686 HLCPYTHNQNGLVERKHRHITELGLTLLAQAAMPLKFWWDSFHTATYIINRLPTPVLS 743



 Score = 73.2 bits (178), Expect(3) = 2e-48
 Identities = 32/64 (50%), Positives = 41/64 (64%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY+YY  FVDD T +T I+PL+TK E +   K FK+ +E QF   I+  Q DWGGEFR  
Sbjct: 614 GYRYYVSFVDDCTRFTWIFPLKTKDETLPVFKIFKTQIEKQFSRPIKCLQSDWGGEFRSF 673

Query: 184 ATFL 195
             +L
Sbjct: 674 VNYL 677


>dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subterraneum]
          Length = 1362

 Score = 95.9 bits (237), Expect(3) = 6e-48
 Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
 Frame = +1

Query: 388 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVS 564
           PDY FLK+FGCAC+P+LR +N  KL F S +C FLGYS  HKGY+CL  +GR+++++ V 
Sbjct: 751 PDYKFLKTFGCACFPFLRLYNTQKLDFHSKECIFLGYSPVHKGYKCLDSTGRVFISKDVV 810

Query: 565 FNEMEFPY 588
           FNE  FPY
Sbjct: 811 FNESRFPY 818



 Score = 82.0 bits (201), Expect(3) = 6e-48
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           +CP+TH QNG  ERKH+HIV  GL+ LAH+ LP  FW  AF+   + INRLP+PTL N  
Sbjct: 682 TCPHTHHQNGSVERKHRHIVETGLTLLAHAKLPLHFWDHAFLTATYLINRLPSPTLENKS 741

Query: 371 PSMVL 385
           P  +L
Sbjct: 742 PFFLL 746



 Score = 63.5 bits (153), Expect(3) = 6e-48
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY Y+   VD +T +T I+PL+ K   +   K+FKS+VE Q+   I++ Q D GGEFRP 
Sbjct: 609 GYSYFLTCVDAYTRFTWIFPLKLKSHTLLTFKNFKSMVELQYNLPIKSVQTDGGGEFRPF 668

Query: 184 ATFLS 198
             FL+
Sbjct: 669 TQFLT 673


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 785

 Score =  103 bits (257), Expect(3) = 1e-47
 Identities = 42/76 (55%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
 Frame = +1

Query: 364 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 540
           +   +   PDY+FL+ FGC+C+P+LRP+N++KLQFRS +C FLGYS +HKGY+CL+P+GR
Sbjct: 613 FRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRSQECVFLGYSTSHKGYKCLAPTGR 672

Query: 541 IYVTRTVSFNEMEFPY 588
           I++++ V F E  FPY
Sbjct: 673 IFISKDVVFCETRFPY 688



 Score = 73.6 bits (179), Expect(3) = 1e-47
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +2

Query: 194 CPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 373
           CP+TH QNG  ERKH+HIV +GL+ LA ++LP  FW  AF+  V+ INRLP+ ++ N  P
Sbjct: 553 CPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQNDVP 612



 Score = 63.2 bits (152), Expect(3) = 1e-47
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY+YY  FVD  T +T I+ L+ K   +   K F ++++ QF   I+A Q DWGGEFR  
Sbjct: 479 GYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKAIQTDWGGEFRSF 538

Query: 184 ATFLS 198
            ++L+
Sbjct: 539 TSYLA 543


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1408

 Score =  100 bits (249), Expect(3) = 4e-47
 Identities = 42/76 (55%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
 Frame = +1

Query: 364 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 540
           Y   +   PDY  L+ FGC+C+P+LRP+N+ KLQFRS +C FLGYS +HKGY+CL+  GR
Sbjct: 709 YHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGR 768

Query: 541 IYVTRTVSFNEMEFPY 588
           +Y+++ V FNE +FPY
Sbjct: 769 LYISKDVVFNETKFPY 784



 Score = 73.2 bits (178), Expect(3) = 4e-47
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +2

Query: 194 CPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 373
           CP+TH QNG  ERKH+HIV +GL+ +A + LP  FW  +F+  V+ INRLP+ ++ N  P
Sbjct: 649 CPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVP 708



 Score = 65.1 bits (157), Expect(3) = 4e-47
 Identities = 28/65 (43%), Positives = 41/65 (63%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY+YY  FVD  T +T IY L++K +     K F ++V+ Q+   I+A Q DWGGE+R  
Sbjct: 575 GYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSF 634

Query: 184 ATFLS 198
            T+L+
Sbjct: 635 TTYLN 639


>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
          Length = 1387

 Score =  100 bits (248), Expect(3) = 4e-47
 Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
 Frame = +1

Query: 349 PYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL 525
           P    Y   +   PDY+ LK FGCACYP L+P+NQ KLQF +T+C F+GYS +HKGY+C+
Sbjct: 639 PNESPYSLMFKREPDYNALKPFGCACYPCLKPYNQHKLQFHTTRCVFVGYSNSHKGYKCI 698

Query: 526 SPSGRIYVTRTVSFNEMEFPY 588
           +  GRI+V+R V FNE  FP+
Sbjct: 699 NSHGRIFVSRHVIFNENHFPF 719



 Score = 70.1 bits (170), Expect(3) = 4e-47
 Identities = 28/61 (45%), Positives = 42/61 (68%)
 Frame = +1

Query: 1   AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
           +G+KYY HF+DDF+ +T I+PL+ K + I A   FK++ E QF   I+  QCD GGE++ 
Sbjct: 509 SGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEYKA 568

Query: 181 I 183
           +
Sbjct: 569 V 569



 Score = 68.6 bits (166), Expect(3) = 4e-47
 Identities = 29/61 (47%), Positives = 40/61 (65%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCPYT  QNG+ ERKH+H+  +GL+ LA + +P  +W +AF   V+ INRLP+    N  
Sbjct: 583 SCPYTSQQNGRAERKHRHVAELGLTLLAQAKMPLRYWWEAFSTAVYLINRLPSSVNPNES 642

Query: 371 P 373
           P
Sbjct: 643 P 643


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  100 bits (249), Expect(3) = 4e-47
 Identities = 42/76 (55%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
 Frame = +1

Query: 364 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 540
           Y   +   PDY  L+ FGC+C+P+LRP+N+ KLQFRS +C FLGYS +HKGY+CL+  GR
Sbjct: 374 YHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGR 433

Query: 541 IYVTRTVSFNEMEFPY 588
           +Y+++ V FNE +FPY
Sbjct: 434 LYISKDVVFNETKFPY 449



 Score = 73.2 bits (178), Expect(3) = 4e-47
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +2

Query: 194 CPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 373
           CP+TH QNG  ERKH+HIV +GL+ +A + LP  FW  +F+  V+ INRLP+ ++ N  P
Sbjct: 314 CPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVP 373



 Score = 65.1 bits (157), Expect(3) = 4e-47
 Identities = 28/65 (43%), Positives = 41/65 (63%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY+YY  FVD  T +T IY L++K +     K F ++V+ Q+   I+A Q DWGGE+R  
Sbjct: 240 GYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSF 299

Query: 184 ATFLS 198
            T+L+
Sbjct: 300 TTYLN 304


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  103 bits (256), Expect(3) = 2e-46
 Identities = 44/72 (61%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
 Frame = +1

Query: 376 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVT 552
           + S PDY FLK FGC+C+P LRP+N  KLQ+RS +C FLGYSL HKGY+C+S +GR+Y++
Sbjct: 736 FKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYIS 795

Query: 553 RTVSFNEMEFPY 588
             V FNE  FPY
Sbjct: 796 HDVIFNETSFPY 807



 Score = 69.7 bits (169), Expect(3) = 2e-46
 Identities = 31/66 (46%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
           +GY+YY HFVD F+ ++ I+ L+ K EAI    +FK+ VE QF   I++ Q DWGGEFR 
Sbjct: 597 SGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQTDWGGEFRA 656

Query: 181 IATFLS 198
             ++L+
Sbjct: 657 FQSYLA 662



 Score = 63.9 bits (154), Expect(3) = 2e-46
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCP+T  QNG  ERKH+ IV  GL+ L  ++LP  FW ++F  VV+  NRLPT  L++  
Sbjct: 671 SCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKC 730

Query: 371 PSMVL 385
           P  VL
Sbjct: 731 PIEVL 735


>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
          Length = 1211

 Score =  100 bits (250), Expect(3) = 5e-45
 Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = +1

Query: 376 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVT 552
           + S P+Y FLK FGC+C+P LRP+N  KLQ+ S +C FLGYSL HKGY C+S +GR+Y++
Sbjct: 557 FKSIPBYSFLKVFGCSCFPNLRPYNTHKLQYXSEECTFLGYSLKHKGYXCMSSNGRVYIS 616

Query: 553 RTVSFNEMEFPY 588
           R V FNE  FPY
Sbjct: 617 RDVIFNETSFPY 628



 Score = 69.7 bits (169), Expect(3) = 5e-45
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = +1

Query: 1   AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
           +GY+YY HFVD F+ ++ I+ L+ K EAI    +FK+ VE QF S I++ Q +WGGEFR 
Sbjct: 418 SGYRYYIHFVDVFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDSKIKSLQTNWGGEFRA 477

Query: 181 IATFLS 198
             ++L+
Sbjct: 478 FQSYLA 483



 Score = 61.2 bits (147), Expect(3) = 5e-45
 Identities = 31/65 (47%), Positives = 41/65 (63%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCP T  QNG  E KH+ IV  GL+ L  ++LP  FW ++F +VV+  NRLPT  L++  
Sbjct: 492 SCPXTQQQNGVVEXKHRTIVEHGLTLLHTTSLPLKFWDESFRIVVYLSNRLPTVVLHHKC 551

Query: 371 PSMVL 385
           P  VL
Sbjct: 552 PIEVL 556


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 87.8 bits (216), Expect(3) = 1e-44
 Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
 Frame = +1

Query: 388 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVTRTV 561
           PDY  L+ FGCAC+P LRP+N  KLQFRS +C FLG+S  HKG++CL  S GRIY++R V
Sbjct: 668 PDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDV 727

Query: 562 SFNEMEFPY 588
            F+E  FP+
Sbjct: 728 VFDENIFPF 736



 Score = 81.3 bits (199), Expect(3) = 1e-44
 Identities = 33/61 (54%), Positives = 46/61 (75%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCP+TH QNG  ERKH+HIV +GLS L+H+++P  FW +AF V  + INR+P+  ++NI 
Sbjct: 599 SCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNIS 658

Query: 371 P 373
           P
Sbjct: 659 P 659



 Score = 61.6 bits (148), Expect(3) = 1e-44
 Identities = 27/63 (42%), Positives = 39/63 (61%)
 Frame = +1

Query: 10  KYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPIAT 189
           KYY  F+DDF+ +T IY +Q K +     + F+ +VE QF   I A Q DWGGE++ + +
Sbjct: 528 KYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQVMVERQFDRKILAMQTDWGGEYQSLNS 587

Query: 190 FLS 198
           F S
Sbjct: 588 FFS 590


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 1403

 Score = 93.6 bits (231), Expect(3) = 1e-44
 Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +1

Query: 364 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 540
           Y   +   PDY  L+ FGCACYP+LRPFN  K+ FRS++C F+GYS+ HKGY+C + +G+
Sbjct: 691 YEVLFNKIPDYLLLRPFGCACYPHLRPFNSHKMDFRSSQCVFIGYSMQHKGYKCFTTNGK 750

Query: 541 IYVTRTVSFNEMEFP 585
           I ++R V F+E  FP
Sbjct: 751 IIISRNVVFDEDTFP 765



 Score = 77.8 bits (190), Expect(3) = 1e-44
 Identities = 36/65 (55%), Positives = 44/65 (67%)
 Frame = +2

Query: 191 SCPYTHSQNGKPERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIF 370
           SCP++H QNG  ERKH+HI  VGL+ L+ S LP+ FW DAF   +  INRLPTP L +  
Sbjct: 630 SCPHSHQQNGTAERKHRHITEVGLTLLSSSGLPHIFWSDAFSTAIHVINRLPTPILGHKS 689

Query: 371 PSMVL 385
           P  VL
Sbjct: 690 PYEVL 694



 Score = 59.3 bits (142), Expect(3) = 1e-44
 Identities = 28/57 (49%), Positives = 34/57 (59%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEF 174
           G++YY HF D F+ YT IY +  K E      HFKS+VE QF   I+ FQ D G EF
Sbjct: 557 GFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMFQSDGGKEF 613


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  150 bits (378), Expect = 9e-37
 Identities = 82/217 (37%), Positives = 116/217 (53%), Gaps = 22/217 (10%)
 Frame = +1

Query: 4    GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
            GY YY  FVD  T YT +Y L+ K +A++A   F ++V TQF + I++ Q DWGGE+R I
Sbjct: 591  GYSYYIAFVDACTKYTWLYFLKRKSDALSAFTQFNALVSTQFQTKIKSLQSDWGGEYRSI 650

Query: 184  ATFLSLYSFXXXXXXXXXS---------------------TYC*CWLVFSGPLQSSLLIL 300
            +T L+             S                     ++    L F     ++ + L
Sbjct: 651  STLLTSLGINHRVTCPHTSHQNGTVERRHRSIVEIGLTLLSHANMPLNFWDHSFTTAVFL 710

Query: 301  VRCVCGCCLQNK*ASYPYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTK 480
            +  +    L +      +T  Y + Y   PDY  +K FGC C+P+LRP+N  KL FRSTK
Sbjct: 711  LNRLPTASLHH------FTSPYHALYNKIPDYSSIKGFGCTCFPHLRPYNSHKLDFRSTK 764

Query: 481  C-FLGYSLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
            C +LG S  HKGY+CLSP GR+Y+++ V FNE+EFPY
Sbjct: 765  CVYLGPSPHHKGYKCLSPDGRVYISKDVVFNELEFPY 801


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  148 bits (373), Expect = 4e-36
 Identities = 85/223 (38%), Positives = 114/223 (51%), Gaps = 27/223 (12%)
 Frame = +1

Query: 1   AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
           +G+KYY HF+DDF+ +T IYPL+ K E I A   FK++VE QF   I+  QCD GGE++ 
Sbjct: 240 SGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFKTLVENQFNKRIKIVQCDGGGEYKA 299

Query: 181 IATFLSLYSFXXXXXXXXXSTY--------------------------C*CWLVFSGPLQ 282
           +                  S                            C  W  FS    
Sbjct: 300 VQKLALEAGIQFRMSCPYTSQQNGRAERKHRHVAELGLTMLAQARMPLCYWWEAFS---- 355

Query: 283 SSLLILVRCVCGCCLQNK*ASYPYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKL 462
            + + L+  +     QN   + PYT      Y   PDY  LK FGCACYP L+P+N+ KL
Sbjct: 356 -TSVYLINRLPSSINQN---ACPYTL----IYKKEPDYSVLKPFGCACYPCLKPYNKHKL 407

Query: 463 QFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
           QF +T+C FLGYS +HKGY+C++  GRI+V+R V FNE  FP+
Sbjct: 408 QFHTTRCVFLGYSNSHKGYKCINSHGRIFVSRHVVFNEEHFPF 450


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
            [Trifolium pratense]
          Length = 835

 Score =  146 bits (368), Expect = 2e-35
 Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 27/223 (12%)
 Frame = +1

Query: 1    AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRP 180
            +G+KYY HF+DDFT +T IYPL+ K +   A   FK++VE QF   I+  QCD GGE++P
Sbjct: 516  SGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEYKP 575

Query: 181  IATFL--------------------------SLYSFXXXXXXXXXSTYC*CWLVFSGPLQ 282
            +                               +  F               W  FS    
Sbjct: 576  VQKHAIEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFS---- 631

Query: 283  SSLLILVRCVCGCCLQNK*ASYPYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKL 462
             + + L+  +      NK         Y   +   PDY+ LK FGCACYP+L+P+N+ KL
Sbjct: 632  -TAVYLINRLPSSVTHNK-------SPYSLLHKREPDYNSLKPFGCACYPFLKPYNKHKL 683

Query: 463  QFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
            QF +T+C FLGYS +HKGY+C++  GRI+++R V FNE  FP+
Sbjct: 684  QFHTTRCVFLGYSNSHKGYKCVNSHGRIFISRHVVFNEDHFPF 726


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  144 bits (364), Expect = 6e-35
 Identities = 84/212 (39%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
 Frame = +1

Query: 4    GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
            GY YY  FVD ++ +T IY L++K +A    K FK++VE QF   ++A Q DWGGEFRP 
Sbjct: 633  GYNYYITFVDAYSRFTWIYLLKSKSDAFIIFKQFKAMVELQFGHSLKALQTDWGGEFRPF 692

Query: 184  ATFLSLYSFXXXXXXXXXSTYC*CWLV---FSGPLQSSLLILVRC-----------VCGC 321
              FL               T+    +V       +   L +L +            +   
Sbjct: 693  TKFLK--DLGVIHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQASLPLSYWDYAFLTAV 750

Query: 322  CLQNK*ASYP--YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLG 492
             L N+  S P  +   Y   +   PDY FLK FGCAC+P LRP+N  KL +RS +C FLG
Sbjct: 751  YLINRLPSAPLDFKIPYTLLFHQDPDYKFLKVFGCACFPLLRPYNTHKLDYRSHECLFLG 810

Query: 493  YSLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
            YS +HKGYRCLSP+GR+++++ V FNE  FP+
Sbjct: 811  YSPSHKGYRCLSPNGRLFISKDVIFNESRFPF 842


>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 1054

 Score =  142 bits (359), Expect = 3e-34
 Identities = 83/211 (39%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
 Frame = +1

Query: 4   GYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGEFRPI 183
           GY YY  FVD  T +T +Y L+ K +AI+A   F S+V+TQF S I+A Q DWGGEFR I
Sbjct: 315 GYTYYIAFVDACTKFTWLYFLKRKSDAISAFTQFHSLVQTQFSSRIKAIQSDWGGEFRSI 374

Query: 184 ATFLSLYSFXXXXXXXXXSTYC*CWLVFSGPLQSSLLILVR------------CVCGCCL 327
           +T L+             S            +  + L L++                  +
Sbjct: 375 STLLTNLGIQHRLTCPHTSHQNGTVERRHRSIVETGLTLLKHANMPLEFWDHSFTTAVSV 434

Query: 328 QNK*--ASYP-YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGY 495
            NK   AS P Y+  + + +   PDY  ++ FGCAC+P+LRP+N  KL+FRSTKC +LG 
Sbjct: 435 LNKLPTASLPNYSSPFYALHHYEPDYKSIRVFGCACFPHLRPYNNHKLEFRSTKCTYLGP 494

Query: 496 SLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
           S  HKG++C+S  GR+Y+++ V FNE EFP+
Sbjct: 495 SPLHKGHKCMSSDGRVYISKDVVFNETEFPF 525


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  142 bits (359), Expect = 3e-34
 Identities = 83/218 (38%), Positives = 115/218 (52%), Gaps = 22/218 (10%)
 Frame = +1

Query: 1    AGYKYYTHFVDDFTNYTGIYPLQTKGEAITALKHFKSVVETQFLSHIQAFQCDWGGE--- 171
            +G+KYY HFVDDF+ +T IYPL+ K E + A   FK++ E QF   I+  QCD GGE   
Sbjct: 509  SGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCDGGGEYKP 568

Query: 172  -----------FRPIATFLSLYSFXXXXXXXXXSTYC*CWLVFSG-PLQ------SSLLI 297
                       FR    + S  +          + +    L  +  PL       S+ + 
Sbjct: 569  VQKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWWEAFSTAVY 628

Query: 298  LVRCVCGCCLQNK*ASYPYTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRST 477
            L+  +     QN+         Y       PDY  LK+FGCACYP L+P+NQ KLQ+ +T
Sbjct: 629  LINRLPSQVTQNE-------SPYSLMLQKEPDYKLLKTFGCACYPCLKPYNQHKLQYHTT 681

Query: 478  KC-FLGYSLAHKGYRCLSPSGRIYVTRTVSFNEMEFPY 588
            +C FLGYS +HKGY+CL+  GRI+++R V FNE  FP+
Sbjct: 682  RCVFLGYSNSHKGYKCLNSHGRIFISRHVIFNEDHFPF 719