BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00038061
         (2001 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   594   0.0  
ref|XP_019080407.1| PREDICTED: uncharacterized protein LOC109123...   559   0.0  
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   531   e-180
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   559   e-180
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   525   e-177
gb|PNY18109.1| retrovirus-related Pol polyprotein from transposo...   546   e-177
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   534   e-175
dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subt...   545   e-174
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   538   e-174
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   515   e-174
gb|PNX93770.1| histone deacetylase [Trifolium pratense]               540   e-172
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   530   e-172
gb|PNX92752.1| histone deacetylase [Trifolium pratense]               538   e-172
gb|PNX77541.1| retrofit protein [Trifolium pratense]                  516   e-171
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   537   e-171
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   505   e-169
gb|KYP34165.1| Copia protein [Cajanus cajan]                          505   e-169
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   504   e-169
gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]      533   e-169
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   530   e-169

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  594 bits (1531), Expect = 0.0
 Identities = 299/544 (54%), Positives = 390/544 (71%), Gaps = 4/544 (0%)
 Frame = +1

Query: 145  HSMVTRSKSGIYKPKAYMAEPLIE-PQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPL 321
            H MVTRSK+GI+KP  Y  +  +E P + +E +S P+WKEAM++E+ AL+KNKTW L  L
Sbjct: 722  HHMVTRSKNGIFKPXVYTVDLNVEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSL 781

Query: 322  PPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVL 501
            P N+  +GC+WV+K KRN DGS+++YKARLVAKGY+Q+ GFD+ ET+SPVVKP+TIRVVL
Sbjct: 782  PTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVVL 841

Query: 502  SIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFE--LLKGQHMVYKLAKSLYGLKQA 675
            +IA+S+ W IRQLDV+NAFLNG++  ++YM QPPGF+    + Q +V KL K+LYGLKQA
Sbjct: 842  AIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQA 901

Query: 676  SRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIG 855
             RAW +K             K+D SL+++     +L VL YVDDI++T  S+ EI + I 
Sbjct: 902  PRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELIS 961

Query: 856  KMNQHFSLKDLGDLHFFLGIEFTATKKG-MFLIQKKYVEDLIVKAGMQGAKGLSTPMITN 1032
            ++   FSLKDLG+L +FLGIE   T  G + L QKKY++DL+ K  M GAK L TPM++ 
Sbjct: 962  RLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSG 1021

Query: 1033 HSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRIT 1212
              LS   G+PI +   YR +VGALQY TITRPEI +SVNKV Q+MQ PLDTHWKAVKRI 
Sbjct: 1022 LKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRIL 1081

Query: 1213 RYLAGTTDYGLHFSSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPT 1392
            RYL GTTD G+    + T NL+             RRSTSG CVFLG++LVSWSSKKQ T
Sbjct: 1082 RYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHT 1141

Query: 1393 VSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRT 1572
             SRSSTEAEYRSLA +T +++WLQSL+ ELQ +   +P++W DN   +SL+ N V HSRT
Sbjct: 1142 TSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRT 1201

Query: 1573 KHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVIPKGSIEL 1752
            KH+ELD++F+REKVM + + V HVP+ DQV D+ TKPLS +FF +LR KL V    S++L
Sbjct: 1202 KHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTV---ASLDL 1258

Query: 1753 RGAE 1764
            +  +
Sbjct: 1259 KNGD 1262


>ref|XP_019080407.1| PREDICTED: uncharacterized protein LOC109123862 [Vitis vinifera]
          Length = 1018

 Score =  559 bits (1440), Expect = 0.0
 Identities = 280/558 (50%), Positives = 366/558 (65%)
 Frame = +1

Query: 100  DAIPAPNVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEY 279
            DA     +     +TH M+TR+KSGI KPK ++A  + EP S+   L Q EWK+AM  EY
Sbjct: 462  DASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAA-IREPSSVSAALQQDEWKKAMVAEY 520

Query: 280  EALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQET 459
            +AL +N TW L PLP  +Q IGCKWVYKTK N DG++ KYKARLVAKG+ Q  GFD+ ET
Sbjct: 521  DALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTET 580

Query: 460  YSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVY 639
            +SPVVKPST+RVV +IA+S+ W I+QLDV+NAFLNGD+  +++M QP GF   +  ++V 
Sbjct: 581  FSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVC 640

Query: 640  KLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT 819
            +L K+LYGLKQA RAW  K             K+D SL+++   +H   VL YVDDI++ 
Sbjct: 641  RLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVI 700

Query: 820  *DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKGMFLIQKKYVEDLIVKAGMQG 999
                  I   I ++N  FSLKDLG++H+FLGI+ + T  G+ L Q KY+ DL+ K  M  
Sbjct: 701  GSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVH 760

Query: 1000 AKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPL 1179
             K   TP+ T   L   +G+P+ D   YR  VGALQY TITRPE+ +SVNKV Q+MQ P 
Sbjct: 761  CKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPT 820

Query: 1180 DTHWKAVKRITRYLAGTTDYGLHFSSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGEN 1359
            + HWK VKRI RYL GT  +GLH   +S  +LI             RRSTSG CVFLG N
Sbjct: 821  EEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPN 880

Query: 1360 LVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAIS 1539
            L+SW SKKQ  VSRSS E EYRSLA +  +I WL+SL+ ELQ+   + P+VW DN   + 
Sbjct: 881  LISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVL 940

Query: 1540 LANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNK 1719
            L+ N V H+RTKH+ELD++F+REKV+ K + VRHVPS DQ+ D+LTK +S   F+  R+K
Sbjct: 941  LSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHK 1000

Query: 1720 LGVIPKGSIELRGAENID 1773
            L +    ++ LRG   +D
Sbjct: 1001 LRIENLSTLSLRGDVRVD 1018


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  531 bits (1367), Expect = e-180
 Identities = 267/530 (50%), Positives = 372/530 (70%), Gaps = 4/530 (0%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPN 330
            M+TR+K+G  KPK + A   I P +++  L++P W +AM  EY+AL+ NKTW L PLPP+
Sbjct: 1    MITRTKTGNLKPKTFTAS--IAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLPPH 58

Query: 331  KQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIA 510
            ++ IGCKW+++ K N DGS+ KYKARLVAKG+ Q  GFD+ ET+SPV+KP TIR++L++A
Sbjct: 59   RKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLA 118

Query: 511  ISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWS 690
            ++  W ++Q+D++NAFLNG +  ++YM QPPGFE    +++V KL K+LYGLKQA RAW 
Sbjct: 119  VTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFE-SSDKNLVCKLHKALYGLKQAPRAWY 177

Query: 691  NKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQH 870
            ++             + D SL + H+      VL YVDDI+IT  + H I+  I K+N  
Sbjct: 178  DRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNIK 237

Query: 871  FSLKDLGDLHFFLGIEFTATKKGMFLI-QKKYVEDLIVKAGMQGAKGLSTPMITNHSLSK 1047
            F+LK LG++ +FLG+E   +  G  L+ Q KY++DL+ K  M+  K + +PM+++  LSK
Sbjct: 238  FALKQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLSK 297

Query: 1048 DEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAG 1227
               + + D +LYR  VGALQYAT+TRP+I +SVNKV Q+M  PL++HWKAVKRI RYL G
Sbjct: 298  FGTDTMEDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLKG 357

Query: 1228 TTDYG--LHFSSASTT-NLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVS 1398
            T ++G  LH S +S   ++              RRSTSGSC++ G NLVSWSSKKQP V+
Sbjct: 358  TENHGLLLHPSKSSPPFSIRAYSDADWANDQDDRRSTSGSCIYFGSNLVSWSSKKQPLVA 417

Query: 1399 RSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRTKH 1578
            RSSTEAEYRS+A+ T D++W+QSL+ ELQI P  IP +  DN  A+SLA+N V HSRTKH
Sbjct: 418  RSSTEAEYRSMANTTADLLWIQSLLVELQI-PCHIPTLLCDNLSAVSLAHNPVLHSRTKH 476

Query: 1579 LELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGV 1728
            +ELDIHF+REKV++K +++ HVP++DQ+ D LTKPLS   +  +R+KL V
Sbjct: 477  IELDIHFVREKVLSKKLNILHVPAVDQLADPLTKPLSPNNYADIRSKLKV 526


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  559 bits (1440), Expect = e-180
 Identities = 280/558 (50%), Positives = 366/558 (65%)
 Frame = +1

Query: 100  DAIPAPNVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEY 279
            DA     +     +TH M+TR+KSGI KPK ++A  + EP S+   L Q EWK+AM  EY
Sbjct: 899  DASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAA-IREPSSVSAALQQDEWKKAMVAEY 957

Query: 280  EALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQET 459
            +AL +N TW L PLP  +Q IGCKWVYKTK N DG++ KYKARLVAKG+ Q  GFD+ ET
Sbjct: 958  DALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTET 1017

Query: 460  YSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVY 639
            +SPVVKPST+RVV +IA+S+ W I+QLDV+NAFLNGD+  +++M QP GF   +  ++V 
Sbjct: 1018 FSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVC 1077

Query: 640  KLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT 819
            +L K+LYGLKQA RAW  K             K+D SL+++   +H   VL YVDDI++ 
Sbjct: 1078 RLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVI 1137

Query: 820  *DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKGMFLIQKKYVEDLIVKAGMQG 999
                  I   I ++N  FSLKDLG++H+FLGI+ + T  G+ L Q KY+ DL+ K  M  
Sbjct: 1138 GSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVH 1197

Query: 1000 AKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPL 1179
             K   TP+ T   L   +G+P+ D   YR  VGALQY TITRPE+ +SVNKV Q+MQ P 
Sbjct: 1198 CKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPT 1257

Query: 1180 DTHWKAVKRITRYLAGTTDYGLHFSSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGEN 1359
            + HWK VKRI RYL GT  +GLH   +S  +LI             RRSTSG CVFLG N
Sbjct: 1258 EEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPN 1317

Query: 1360 LVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAIS 1539
            L+SW SKKQ  VSRSS E EYRSLA +  +I WL+SL+ ELQ+   + P+VW DN   + 
Sbjct: 1318 LISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVL 1377

Query: 1540 LANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNK 1719
            L+ N V H+RTKH+ELD++F+REKV+ K + VRHVPS DQ+ D+LTK +S   F+  R+K
Sbjct: 1378 LSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHK 1437

Query: 1720 LGVIPKGSIELRGAENID 1773
            L +    ++ LRG   +D
Sbjct: 1438 LRIENLSTLSLRGDVRVD 1455


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  525 bits (1353), Expect = e-177
 Identities = 272/533 (51%), Positives = 364/533 (68%), Gaps = 6/533 (1%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPLI--EPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLP 324
            M TRSKSGI+KPK Y +  L   EP+++++ L  P+W EAM +EY ALLKN TW L  LP
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 325  PNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLS 504
            P++  IGCKWV++ K N+DGS+ +YKARLVAKG+ Q  GFD+ ET+SP++KP TIR++L+
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 505  IAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRA 684
            +AIS  W I QLDV+NAFLNG ++  +YM QPPGFE +    +V KL K+LYGLKQA R 
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFE-VPDSTLVCKLNKALYGLKQAPRQ 178

Query: 685  WSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMN 864
            W  +             K D SL+  H QS+ + +L YVDDIIIT +S    QQ I ++N
Sbjct: 179  WFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLN 238

Query: 865  QHFSLKDLGDLHFFLGIEFTATKKG-MFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSL 1041
              FSLK LG L +FLGIE    + G + L Q KY+ DL+ +  M  A  +S+PM+++  L
Sbjct: 239  SIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKL 298

Query: 1042 SKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYL 1221
            SK   + + DST YR +VGALQYATITRPE+ ++VNKV Q+M  PL++HW AVKRI RYL
Sbjct: 299  SKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRYL 358

Query: 1222 AGTTDYGLHFSSA---STTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPT 1392
             GT  YGLH   A      +L              RRSTSG+ +FLG NL+SW S+KQP 
Sbjct: 359  KGTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQPV 418

Query: 1393 VSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRT 1572
            V+RSSTEAEYRSLA  T +++W+Q+L+ EL++ P   P ++ DNQ  +SLA+N V HSRT
Sbjct: 419  VARSSTEAEYRSLAQATSEVLWIQTLLHELRV-PFSTPTIYCDNQSTVSLAHNPVLHSRT 477

Query: 1573 KHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVI 1731
            KH+E+++ F+REKV+   ++V+H+P+ DQ  D LTKPLS   F+ LR+KL V+
Sbjct: 478  KHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKVV 530


>gb|PNY18109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1239

 Score =  546 bits (1408), Expect = e-177
 Identities = 282/561 (50%), Positives = 385/561 (68%), Gaps = 4/561 (0%)
 Frame = +1

Query: 70   HITIDLPIETDAIPAPNVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQP 249
            H++ + P  + + P P VIS   + H M+TR K+G  KPK ++AE  +EP+S+   LS P
Sbjct: 684  HLSTNEPSTSLSQPDPPVISH-HNDHPMITRGKTGSLKPKVFLAE--LEPKSVRSALSDP 740

Query: 250  EWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYT 429
            +WK+AM  EY+AL+ NKTW L PLPP+++ IGCKW+++ K N DG++ K+KARLVAKG+ 
Sbjct: 741  KWKQAMQDEYKALMDNKTWSLVPLPPHRKAIGCKWIFRVKENPDGTINKFKARLVAKGFL 800

Query: 430  QIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGF 609
            Q  GFD+ ET+SPV+KP TIR++L++A++  W+++Q+DV+NAFLNG +  ++YMAQP GF
Sbjct: 801  QTAGFDFTETFSPVIKPITIRIILTLAVTFKWQVQQIDVNNAFLNGVLQEEVYMAQPSGF 860

Query: 610  ELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLV 789
            E    + +V KL KSLYGLKQA RAW ++             K D SL + ++      V
Sbjct: 861  E-SSDKSLVCKLHKSLYGLKQAPRAWYDRLTQALLQLGFIKSKCDPSLLVHNQNGTCTYV 919

Query: 790  LTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKGMFLI-QKKYV 966
            L YVDDI+I   + H I   I K+N  F+LK LG + +FLGIE      G  L+ Q KYV
Sbjct: 920  LIYVDDILIIGSAPHLINDLINKLNMSFALKRLGQVDYFLGIEVHHLSSGALLLNQSKYV 979

Query: 967  EDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSV 1146
             DL+ KA M+ +K + +PM+++  LSK   + +TD TLYR +VGALQYAT+TRP+I +SV
Sbjct: 980  RDLLCKAKMEDSKPIGSPMVSSCRLSKYGTDTMTDPTLYRSVVGALQYATLTRPDIAFSV 1039

Query: 1147 NKVSQYMQTPLDTHWKAVKRITRYLAGTTDYGLHFSSAST---TNLIXXXXXXXXXXXXX 1317
            NKV Q+M  PL++HWKAVKRI RYL GT  +GL  + +S     +L              
Sbjct: 1040 NKVCQFMAHPLESHWKAVKRILRYLKGTLSHGLLLNPSSAGPPFSLRAYSDADWATDHDD 1099

Query: 1318 RRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPE 1497
            RRSTSGSC++ G NLVSW SKKQP V+RSSTEAEYRS+A+ T D++W+QSL++ELQ+ P 
Sbjct: 1100 RRSTSGSCIYFGPNLVSWGSKKQPLVARSSTEAEYRSMANTTADLLWIQSLLRELQV-PF 1158

Query: 1498 RIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILT 1677
              P +  DN  A+SLA+N V HS+TKHLELDIHF+REKV++K ++V H+P+  Q+ D LT
Sbjct: 1159 LTPTLLCDNLSAVSLAHNPVLHSKTKHLELDIHFVREKVISKKLNVLHIPAGYQLADPLT 1218

Query: 1678 KPLSGQFFVRLRNKLGVIPKG 1740
            KPLS   F  LR+KL V P G
Sbjct: 1219 KPLSPASFASLRSKLKVFPLG 1239


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  534 bits (1375), Expect = e-175
 Identities = 275/565 (48%), Positives = 374/565 (66%), Gaps = 9/565 (1%)
 Frame = +1

Query: 91   IETDAIPAPNVISS-VTSTHSMVTRSKSGIYKPKAYMA-------EPLIEPQSLEEVLSQ 246
            + T  I  P V SS   + H M TRSK+GI+KPK Y A       +  IEP +++E L++
Sbjct: 439  VATVPIIEPGVSSSGPQNAHLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAK 498

Query: 247  PEWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGY 426
            PEW +AM  EY+AL+ N+TW L  LP   + IGCKW++K+K N DGS  ++KARLVAKGY
Sbjct: 499  PEWLKAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGY 558

Query: 427  TQIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPG 606
             Q  G D+ ET+SPVVKP+T+R+VLS+AI+  W I Q+D++N FL+GD+   +YM+QPPG
Sbjct: 559  NQKPGLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMSQPPG 618

Query: 607  FELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLL 786
            F   + +  V KL K++YGLKQA R+W  K             K+D SL+++  ++ TL+
Sbjct: 619  FNT-QHKDKVCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKTTTLM 677

Query: 787  VLTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKG-MFLIQKKY 963
            +L YVDDIIIT +S  EI+  I  ++  FSLKDLG LH+FLG+E T TK+G + L Q KY
Sbjct: 678  LLIYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQTKY 737

Query: 964  VEDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYS 1143
            + +++ KA M  +    TPM+ N  L+++E   + D + YR IVGALQY TITRP++ ++
Sbjct: 738  LREILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVSFA 797

Query: 1144 VNKVSQYMQTPLDTHWKAVKRITRYLAGTTDYGLHFSSASTTNLIXXXXXXXXXXXXXRR 1323
            VNKV QYM  P + HWKAVKRI RYL GT  +GL        NL              R+
Sbjct: 798  VNKVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDDRK 857

Query: 1324 STSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERI 1503
            STSG CV+LG NL+SWSS+KQ +VSRS+TEAEYRS+A V  DIIW+QSL+ EL++ P+ +
Sbjct: 858  STSGYCVYLGSNLISWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRV-PKSL 916

Query: 1504 PIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKP 1683
            P ++ DN  A+ +  N V HS+TKH ELD+HF+R+KV    + V H+P+  QV D LTKP
Sbjct: 917  PRIYCDNLSAVLITANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLTKP 976

Query: 1684 LSGQFFVRLRNKLGVIPKGSIELRG 1758
            L+ Q F   RNKL V    ++ LRG
Sbjct: 977  LAKQHFHHFRNKLMVTTLDTMSLRG 1001


>dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subterraneum]
          Length = 1433

 Score =  545 bits (1404), Expect = e-174
 Identities = 280/566 (49%), Positives = 385/566 (68%), Gaps = 4/566 (0%)
 Frame = +1

Query: 49   PFTRYGGHITIDLPIETDAIPAPNVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSL 228
            P T    +I   LP+     P P +  S+ + HSM+TR K+G  KPK + A   IEP ++
Sbjct: 867  PITNSEPNIASPLPLHKTTSPPPPI--SLHNDHSMITRGKTGSLKPKTFTAS--IEPTTV 922

Query: 229  EEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKAR 408
            +  L+ P+W +AMN EY+AL+ N TW L PLPP+++ IGCKW++K K N DGS+ KYKAR
Sbjct: 923  KTALADPQWAQAMNTEYKALMDNHTWSLVPLPPHRRAIGCKWIFKIKENPDGSVNKYKAR 982

Query: 409  LVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLY 588
            LVAKG+ Q  GFD+ ET+SPV+KP TIR++L++A++  W ++Q+D++NAFLNG +  ++Y
Sbjct: 983  LVAKGFHQTPGFDFNETFSPVIKPVTIRLILTLAVTYKWPVQQIDINNAFLNGVLQEEVY 1042

Query: 589  MAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHE 768
            M QP GFE    + +V KL KSLYGLKQA RAW +K             + D SL + H+
Sbjct: 1043 MTQPKGFE-SSDKSLVCKLHKSLYGLKQAPRAWYDKLTQTLLQMGFVKSRCDPSLLVHHQ 1101

Query: 769  QSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKK-GMF 945
            Q     VL YVDDI+IT  + H I+  I K+N  F+LK LG++ +FLGI+    K  G+ 
Sbjct: 1102 QGTCTYVLVYVDDILITGSAPHLIKDLIQKLNVQFALKQLGEVDYFLGIQVQHNKSGGLL 1161

Query: 946  LIQKKYVEDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITR 1125
            L Q  Y++DL+ K  M+  K + +PM+ +  LSK   + +TD++LYR  VGALQYAT+TR
Sbjct: 1162 LHQSTYIKDLLSKTNMENCKPIGSPMVNSCRLSKFGTDAMTDASLYRSTVGALQYATLTR 1221

Query: 1126 PEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAGTTDYG--LHFSSASTT-NLIXXXXXX 1296
            P+I YSVNKV Q+M  PL++HWKAVKRI RYL GT ++G  LH S++S   +L       
Sbjct: 1222 PDIAYSVNKVCQFMSHPLESHWKAVKRILRYLKGTINHGLLLHPSTSSPPFSLRAYSDAD 1281

Query: 1297 XXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMK 1476
                   RRSTSGSC++ G NLVSWSSKKQ  V+RSSTEAEYRS+A+ T +++W+QSL++
Sbjct: 1282 WATDQDDRRSTSGSCIYFGPNLVSWSSKKQQLVARSSTEAEYRSMANTTAELLWIQSLLQ 1341

Query: 1477 ELQIQPERIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLD 1656
            ELQ+ P   P +  DN  A++LA+N + HSRTKHLELDIHF+REKV +K ++V+HV ++D
Sbjct: 1342 ELQV-PFHTPTLLCDNISAVALAHNPILHSRTKHLELDIHFVREKVTSKQLNVKHVSAID 1400

Query: 1657 QVVDILTKPLSGQFFVRLRNKLGVIP 1734
            Q+ D LTKPLS   +  +R KL V P
Sbjct: 1401 QLADPLTKPLSPSNYAAIRTKLKVFP 1426


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  538 bits (1387), Expect = e-174
 Identities = 276/538 (51%), Positives = 371/538 (68%), Gaps = 4/538 (0%)
 Frame = +1

Query: 133  VTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWIL 312
            +++ H MVTR K+G  KPK   A   IEP S+   L+ P+W +AM  EY+AL+ N TW L
Sbjct: 658  ISNNHPMVTRGKTGNLKPKVLTAS--IEPTSVRAALNDPQWLKAMQSEYKALMDNNTWSL 715

Query: 313  CPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIR 492
              LPP+K+ IGCKW+++ K N DG++ KYKARLVAKG+ Q  GFD++ET+SPV+KP+TIR
Sbjct: 716  VSLPPHKKAIGCKWIFRVKENPDGTVNKYKARLVAKGFLQTPGFDFKETFSPVIKPTTIR 775

Query: 493  VVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQ 672
            ++L++A++  W ++Q+DV+NAFLNG +  ++YM+QP GFE +  + +V KL KSLYGLKQ
Sbjct: 776  IILTLAVTYKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFE-VADKSLVCKLHKSLYGLKQ 834

Query: 673  ASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFI 852
            A RAW  +             K D SL I H+Q     VL YVDDI+IT  + H IQ  I
Sbjct: 835  APRAWYERLTQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDLI 894

Query: 853  GKMNQHFSLKDLGDLHFFLGIE-FTATKKGMFLIQKKYVEDLIVKAGMQGAKGLSTPMIT 1029
             K+N  FSLK LG++ +FLGIE       G+ L Q KY++DL+ +  M+  K + +PM++
Sbjct: 895  HKLNIQFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVS 954

Query: 1030 NHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRI 1209
            +  LSK   + ++D +LYR  VGALQYAT+TRP+I YSVNKV Q+M  PL+THWKAVKRI
Sbjct: 955  SCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMANPLETHWKAVKRI 1014

Query: 1210 TRYLAGTTDYGL--HFSSASTT-NLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSK 1380
             RYL GT+++GL  H S +S   +L              RRSTSGSC+F G NLVSW SK
Sbjct: 1015 LRYLKGTSNHGLLIHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIFFGSNLVSWGSK 1074

Query: 1381 KQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQ 1560
            KQP V+RSSTEAEYRS+A+ T D++W+QSL+ E+ + P   P +  DN  A+SLA+N V 
Sbjct: 1075 KQPLVARSSTEAEYRSMANTTADLMWIQSLLNEIHV-PYHTPTLLCDNLSAVSLAHNPVL 1133

Query: 1561 HSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVIP 1734
            HSRTKH+ELDIHF+REKV+ K + V HVP++DQ+ D LTKPLS   +  +R+KL V P
Sbjct: 1134 HSRTKHIELDIHFVREKVLAKKLHVLHVPAIDQLADPLTKPLSPSNYATIRSKLKVFP 1191


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  515 bits (1327), Expect = e-174
 Identities = 263/530 (49%), Positives = 358/530 (67%), Gaps = 4/530 (0%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPN 330
            MVTR K+G  KPK +     +EP +++  L+ P+W  AM  EY+AL+ N TW L PLPP+
Sbjct: 1    MVTRGKTGNLKPKVFTVS--LEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLPPH 58

Query: 331  KQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIA 510
            K+ IGCKW+++ K N+DG++ K+KARLVAKG+ Q  GFD+ ET+SPV+KP TIRV+L++A
Sbjct: 59   KKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILTLA 118

Query: 511  ISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWS 690
            ++  W ++Q+DV+NAFLNG +  ++YM QP GFE    + +V KL KSLYGLKQA RAW 
Sbjct: 119  VTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFE-SSDKSLVCKLHKSLYGLKQAPRAWY 177

Query: 691  NKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQH 870
             +             K D SL I ++Q     VL YVDDI+IT  + H I+  I K+N  
Sbjct: 178  ERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNSQ 237

Query: 871  FSLKDLGDLHFFLGIE-FTATKKGMFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSLSK 1047
            F+LK LG++ +FLGIE       G+ L Q KY+ DL+ +  M+  K + +PM+++  LSK
Sbjct: 238  FALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLSK 297

Query: 1048 DEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAG 1227
               + ++D +LYR  VGALQYAT+TRP+I +SVNKV Q+M  PL+THWKAVKRI RYL G
Sbjct: 298  FGTDAMSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKAVKRILRYLKG 357

Query: 1228 TTDYGLHFS---SASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVS 1398
            TT +GL  +   S    +L              RRSTSGSC++ G NL+SW SKKQ  V+
Sbjct: 358  TTTHGLLLNPSPSGPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWGSKKQQLVA 417

Query: 1399 RSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRTKH 1578
            RSSTEAEYRS+A+ T D++W+QSL++EL +     P +  DN  A+SLA+N V HSRTKH
Sbjct: 418  RSSTEAEYRSMANTTADLLWIQSLLRELHVSC-HTPTLLCDNLSAVSLAHNPVLHSRTKH 476

Query: 1579 LELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGV 1728
            +ELDIHF+RE+V++K + V HVP+ DQ+ D LTKPLS   +  +R KL V
Sbjct: 477  IELDIHFVRERVLSKQLHVLHVPATDQLADPLTKPLSPSNYATIRTKLKV 526


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score =  540 bits (1392), Expect = e-172
 Identities = 279/546 (51%), Positives = 376/546 (68%), Gaps = 4/546 (0%)
 Frame = +1

Query: 109  PAPNVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEAL 288
            P+P   +S  + H M+TR K+G  KPK + A   +EP S++  L+ P+W +AM  EY+AL
Sbjct: 910  PSP---TSNHNNHPMITRGKTGNLKPKTFTAS--LEPTSVKNALNDPQWLKAMQSEYKAL 964

Query: 289  LKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSP 468
            + N TW L  LPP+K+ IGCKW+++ K N DG++ KYKARLVAKG+ Q  GFD++ET+SP
Sbjct: 965  MDNNTWSLVSLPPHKKAIGCKWIFRVKENPDGTINKYKARLVAKGFLQTPGFDFKETFSP 1024

Query: 469  VVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLA 648
            V+KP+TIRV+L++A++  W I+Q+DV+NAFLNG +  ++YM+QPPGFE    + +V KL 
Sbjct: 1025 VIKPTTIRVILTLAVTYKWSIQQIDVNNAFLNGLLQEEVYMSQPPGFE-ATDKSLVCKLH 1083

Query: 649  KSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DS 828
            KSLYGLKQA RAW  +             K D SL + H+Q     VL YVDDI+IT  +
Sbjct: 1084 KSLYGLKQAPRAWYERLTQALLQMGFVTSKCDPSLLVHHQQGACTYVLIYVDDILITGSA 1143

Query: 829  NHEIQQFIGKMNQHFSLKDLGDLHFFLGIE-FTATKKGMFLIQKKYVEDLIVKAGMQGAK 1005
             H IQ  I K+N  FSLK LG++ +FLGIE       G+ L Q KY++DL+ +  M+  K
Sbjct: 1144 PHLIQDLIHKLNIQFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCK 1203

Query: 1006 GLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDT 1185
             + +PM+++  LSK   + ++D +LYR  VGALQYAT+TRP+I YSVNKV Q+M  PL+T
Sbjct: 1204 AIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMSNPLET 1263

Query: 1186 HWKAVKRITRYLAGTTDYG--LHFSSASTT-NLIXXXXXXXXXXXXXRRSTSGSCVFLGE 1356
            HWKAVKRI RYL GT+++G  LH S +S   +L              RRSTSGSC++ G 
Sbjct: 1264 HWKAVKRILRYLKGTSNHGLLLHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGS 1323

Query: 1357 NLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAI 1536
            NL+SWSSKKQP V+RSSTEAEYRS+A+ T D++W+QSL+ EL + P   P +  DN  A+
Sbjct: 1324 NLISWSSKKQPLVARSSTEAEYRSMANTTADLLWIQSLLSELHV-PYHTPTLLCDNLSAV 1382

Query: 1537 SLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRN 1716
            SLA+N V HSRTKH+ELDIHF+REKV++K + V HVP+ DQ+ D LTKPLS   +  +R 
Sbjct: 1383 SLAHNPVLHSRTKHIELDIHFVREKVLSKKLHVLHVPATDQLADPLTKPLSPSNYGTIRC 1442

Query: 1717 KLGVIP 1734
            KL V P
Sbjct: 1443 KLKVFP 1448


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  530 bits (1364), Expect = e-172
 Identities = 280/580 (48%), Positives = 383/580 (66%), Gaps = 7/580 (1%)
 Frame = +1

Query: 13   TNHISPIT*SLSPFTR-YGGHITIDLPIETDAIPAPNVISSVTSTHSMVTRSKSGIYKPK 189
            T   S I+ S SP T  +    T+ +P  ++  P+ + I    + H M TR+K GI KP+
Sbjct: 490  TTSPSLISDSYSPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPR 549

Query: 190  AYMAEPL--IEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYK 363
                  L  +EP++ ++ LS P W  AM  EY ALL N TW L PLPP++  IGCKWV++
Sbjct: 550  LQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFR 609

Query: 364  TKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLD 543
             K N +GS+ KYKARLVAKG+ Q  GFDY ET+SPV+KP T+R++L++A++  W I+QLD
Sbjct: 610  VKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLD 669

Query: 544  VDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXX 723
            V+NAFLNG ++ ++YM QPPGFE    +++V KL K++YGLKQA RAW +K         
Sbjct: 670  VNNAFLNGTLEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLN 728

Query: 724  XXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHF 903
                K D SL+I  + ++ + +L YVDDIIIT +++  +   + +++  FSLKDLGDL F
Sbjct: 729  FYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDF 788

Query: 904  FLGIEFTATKKG-MFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTL 1080
            FLGIE  +   G + L Q KY+ DL+ +  M+G+K +S+PMI+   LSK       D++L
Sbjct: 789  FLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASL 848

Query: 1081 YRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAGTTDYGLHF--- 1251
            YR +VGALQYATITRPEI +SVNKV Q+M  PL  HW AVKRI RYL GTT +GL     
Sbjct: 849  YRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPA 908

Query: 1252 SSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSL 1431
            SS+S+ ++              RRSTSG+ +FLG NLVSW SKKQ  V+RSSTEAEYRSL
Sbjct: 909  SSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSL 968

Query: 1432 AHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREK 1611
            A  T ++ W+Q+L+ EL++     PI++ DN   ++LA+N V H+RTKH+ELD+ F+REK
Sbjct: 969  ALATTEVTWIQTLLSELKV-THSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFFVREK 1027

Query: 1612 VMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVI 1731
            V  K + V HVP++DQ  D+LTK LS   F  LR+KL V+
Sbjct: 1028 VAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQVV 1067


>gb|PNX92752.1| histone deacetylase [Trifolium pratense]
          Length = 1455

 Score =  538 bits (1386), Expect = e-172
 Identities = 277/543 (51%), Positives = 370/543 (68%), Gaps = 4/543 (0%)
 Frame = +1

Query: 118  NVISSVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEALLKN 297
            NV  S  + HSM+TR K+G  KPKA+    ++EP +++  L+ P W +AM+ E++AL  N
Sbjct: 910  NVSISHHNDHSMITRGKTGNLKPKAFTT--VLEPTTIKSALADPNWLQAMHTEFKALTDN 967

Query: 298  KTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVK 477
             TW L PLPP+K+ IGCKW+++ K N DGS+ KYKARLVAKG+ Q  GFD+ ET+SPV+K
Sbjct: 968  NTWSLVPLPPHKKAIGCKWIFRIKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIK 1027

Query: 478  PSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSL 657
            P TIR++L++A++  W ++Q+D++NAFLNG +  ++YM QP GFE    + +V KL KSL
Sbjct: 1028 PVTIRIILTLAVTYKWAVQQIDINNAFLNGILHEEVYMHQPAGFE-SSDKSLVCKLHKSL 1086

Query: 658  YGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHE 837
            YGLKQA RAW  +             K D SL + H+Q  T  VL YVDDI+IT  + H 
Sbjct: 1087 YGLKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGATTYVLIYVDDILITGSAPHL 1146

Query: 838  IQQFIGKMNQHFSLKDLGDLHFFLGIEFTAT-KKGMFLIQKKYVEDLIVKAGMQGAKGLS 1014
            IQ  I K+N  F+LK LG++ +FLGIE   T   G+ L Q KY+ DL+ K  M   K + 
Sbjct: 1147 IQDVIQKLNIKFALKQLGEVDYFLGIEVHKTVSGGLLLNQSKYIRDLLSKTNMDNCKPIG 1206

Query: 1015 TPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWK 1194
            +PM+ N  LSK   + +TD +LYR  VGALQYAT+TRP+I +SVNKV Q+M  PL+THWK
Sbjct: 1207 SPMVNNCRLSKFGTDALTDPSLYRSTVGALQYATLTRPDISFSVNKVCQFMAHPLETHWK 1266

Query: 1195 AVKRITRYLAGTTDYG--LHFSSASTT-NLIXXXXXXXXXXXXXRRSTSGSCVFLGENLV 1365
            AVKRI RYL GT ++G  LH S +S   +L              RRSTSGSC++ G NLV
Sbjct: 1267 AVKRILRYLKGTINHGLLLHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGSNLV 1326

Query: 1366 SWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLA 1545
            SW SKKQP V+RSSTEAEYRS+A+ T +++W+QSL+ ELQ+ P   P +  DN  A+SLA
Sbjct: 1327 SWGSKKQPLVARSSTEAEYRSMANTTAELLWIQSLLHELQV-PYHTPTLLCDNLSAVSLA 1385

Query: 1546 NNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLG 1725
            +N + H+RTKH+ELDIHF+REKV++K + V HVP+ DQ+ D LTKPLS   +  +R KL 
Sbjct: 1386 HNPILHARTKHIELDIHFVREKVLSKQLQVLHVPATDQLADPLTKPLSPANYATIRAKLK 1445

Query: 1726 VIP 1734
            V P
Sbjct: 1446 VFP 1448


>gb|PNX77541.1| retrofit protein [Trifolium pratense]
          Length = 707

 Score =  516 bits (1328), Expect = e-171
 Identities = 260/540 (48%), Positives = 361/540 (66%), Gaps = 6/540 (1%)
 Frame = +1

Query: 130  SVTSTHSMVTRSKSGIYKPKA-YMA-----EPLIEPQSLEEVLSQPEWKEAMNKEYEALL 291
            +  +++++ TRSKSGI+KPK  Y+      +  +EP + +E L++P WKEAM KE+EAL+
Sbjct: 164  NTNTSNAIHTRSKSGIHKPKLPYIGLTETYKDTMEPANAKEALTRPLWKEAMQKEFEALM 223

Query: 292  KNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPV 471
             NKTWIL P      V+  KWV+KTK  +DGS+ + KARLVAKG+ Q VG DY+ET+SPV
Sbjct: 224  SNKTWILVPYQDQTNVVDSKWVFKTKYKSDGSIERRKARLVAKGFQQTVGIDYEETFSPV 283

Query: 472  VKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAK 651
            VK ST+R++LSIA+   W +RQLD++NAFLNG +   +YM QP GF      + + KL+K
Sbjct: 284  VKASTVRIILSIAVHLNWEVRQLDINNAFLNGYLKETVYMQQPEGFVDPTKPNHICKLSK 343

Query: 652  SLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSN 831
            ++YGLKQA RAW +              K+D+SL++   + H   +L YVDDII+T ++N
Sbjct: 344  AIYGLKQAPRAWFDSLKTALLNWGFQNTKSDSSLFLLKGKDHITFLLIYVDDIIVTGNNN 403

Query: 832  HEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKGMFLIQKKYVEDLIVKAGMQGAKGL 1011
              +Q FI ++N  FSLKDLG LH+FLGIE      GM+L Q KY+ DL+ K  M  A   
Sbjct: 404  KFLQAFIKQLNDVFSLKDLGQLHYFLGIEVQRNVSGMYLKQSKYIGDLLKKFKMDNASSC 463

Query: 1012 STPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHW 1191
             TPMIT    +  EG  + D T++RQ +G LQY T TRP+I +SVNK+SQYM +P   HW
Sbjct: 464  PTPMITGRQFTV-EGEKLKDPTVFRQAIGGLQYLTHTRPDIAFSVNKLSQYMSSPTIDHW 522

Query: 1192 KAVKRITRYLAGTTDYGLHFSSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSW 1371
            + +KRI RYL GT +Y LH   ++  ++              R+S SG CVFLGE L+SW
Sbjct: 523  QGIKRILRYLQGTINYCLHIKPSTDLDITGFSDADWATSIDDRKSMSGQCVFLGETLISW 582

Query: 1372 SSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANN 1551
            SS+KQ  VSRSSTE+EYR+LA +  +I W++SL+ EL++   R PI+W DN  A +LA+N
Sbjct: 583  SSRKQKVVSRSSTESEYRALADLAAEIAWIRSLLTELELPLPRKPILWCDNLSAKALASN 642

Query: 1552 HVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVI 1731
             V H+R+KH+E+D+H+IR++V+   + V +VP+ DQV D LTKPLS   F ++R+KLGVI
Sbjct: 643  PVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTADQVADCLTKPLSHTRFSQIRDKLGVI 702


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  537 bits (1383), Expect = e-171
 Identities = 281/559 (50%), Positives = 376/559 (67%), Gaps = 9/559 (1%)
 Frame = +1

Query: 85   LPIETDAIPAPNVIS-----SVTSTHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQP 249
            LP+ T   P P+ I      S  + HSM+TR+K+G  KPKAY++  L EP++++  LS P
Sbjct: 886  LPLPT---PLPSTIYGQPVISNHNDHSMITRAKTGNLKPKAYLS--LAEPKTVKSALSDP 940

Query: 250  EWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYT 429
            +W  AM  EY+AL+ N TW L PLPP+++ IGCKWV++ K N DG++ KYKARLVAKG+ 
Sbjct: 941  QWLAAMQLEYKALMDNNTWSLVPLPPHRRAIGCKWVFRIKENPDGTVNKYKARLVAKGFA 1000

Query: 430  QIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGF 609
            Q  GFD+ ET+SPV+KP TIR++L++A++  W ++Q+DV+NAFLNG +  ++YM QP GF
Sbjct: 1001 QTPGFDFTETFSPVIKPITIRIILTLAVTNKWPVQQIDVNNAFLNGVLQEEVYMHQPAGF 1060

Query: 610  ELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLV 789
            E    + +V KL KSLYGLKQA RAW  K             K D SL +         V
Sbjct: 1061 E-NADRSLVCKLHKSLYGLKQAPRAWYEKLTQTLLTFGFVKSKCDPSLLVHSHNGAVTYV 1119

Query: 790  LTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKG-MFLIQKKYV 966
            L YVDDI+IT  + H IQ  I K+N HF+LK LG L +FLGIE  +   G + L Q KY+
Sbjct: 1120 LIYVDDILITGSAPHVIQDLIHKLNVHFALKQLGQLDYFLGIEVHSLSTGALLLTQTKYI 1179

Query: 967  EDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYSV 1146
             DL+ KA M+ +  + +PM++   LSK   +  +D+TLYR +VGALQY T+TRP+I +SV
Sbjct: 1180 RDLLCKAKMENSNPIGSPMVSTCRLSKIGTDVFSDATLYRSVVGALQYVTLTRPDIAFSV 1239

Query: 1147 NKVSQYMQTPLDTHWKAVKRITRYLAGTTDYGLHFSSAST---TNLIXXXXXXXXXXXXX 1317
            NK  Q+M  PLD+HWKAVKRI RYL GT  YGL  S + T    +L              
Sbjct: 1240 NKACQFMARPLDSHWKAVKRILRYLKGTLHYGLCISPSLTGPPFSLRAYSDADWATDQDD 1299

Query: 1318 RRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPE 1497
            RRSTSGSC++ G NLVSWSSKKQ  V+RSSTEAEYRS+A+ T D++W+QSL++ELQ+ P 
Sbjct: 1300 RRSTSGSCIYFGPNLVSWSSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLQELQV-PF 1358

Query: 1498 RIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDILT 1677
              P +  DN  A++L++N V HSRTKH+ELDIHF+RE+V++K + V HVP++DQ+ D LT
Sbjct: 1359 HTPTLLCDNLSAVALSHNPVLHSRTKHMELDIHFVRERVISKQLHVLHVPAMDQLADPLT 1418

Query: 1678 KPLSGQFFVRLRNKLGVIP 1734
            KPLS   +  +R KL V P
Sbjct: 1419 KPLSPSNYGVIRTKLKVFP 1437


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  505 bits (1300), Expect = e-169
 Identities = 262/533 (49%), Positives = 352/533 (66%), Gaps = 6/533 (1%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPL--IEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLP 324
            M TR+K+GI KP+      L  IEP++ ++ L+   W  AM +EY ALL N TW L  LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 325  PNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLS 504
            PNK  IGCKWV++ K N+DG++ KYKARLVAKG+ Q  G DY ET+SPVVKP TIR++L+
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 505  IAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRA 684
            +A++  W I+QLDV+NAFLNG++  ++YM+QPPGFE    + +V KL K++YGLKQA RA
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFE-SSDKTLVCKLHKAIYGLKQAPRA 179

Query: 685  WSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMN 864
            W +K             K D SL++    ++ + +L YVDDIIIT +++  +Q  I ++N
Sbjct: 180  WFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQLN 239

Query: 865  QHFSLKDLGDLHFFLGIEFTATKKG-MFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSL 1041
              FSLKDLG L FFLGIE  +   G + L Q KY+ DL+ +  M+ +  +S+PM++   L
Sbjct: 240  SAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGCKL 299

Query: 1042 SKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYL 1221
            S+       D TLYR +VGALQYATITRPEI +SVNKV Q+M  PL+ HW AVKRI RYL
Sbjct: 300  SRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILRYL 359

Query: 1222 AGTTDYGLHFSSA---STTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPT 1392
             GT   GLH   A   S  ++              RRSTSG+ +F+G NL+SW SKKQ  
Sbjct: 360  KGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQTV 419

Query: 1393 VSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRT 1572
            V+RSS EAEYRSLA  T +++W+Q+L+ EL +     P+V+ DN   ++LA+N V H+RT
Sbjct: 420  VARSSAEAEYRSLALATAEVLWIQTLLSELHVS-HHTPVVYCDNMSTVALAHNPVLHART 478

Query: 1573 KHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVI 1731
            KH+ELD+ F+REKV    + V HVP++DQ  DILTK LS   F  LR KL ++
Sbjct: 479  KHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLV 531


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  505 bits (1300), Expect = e-169
 Identities = 260/539 (48%), Positives = 356/539 (66%), Gaps = 1/539 (0%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPN 330
            MVTR+K+GI+KPK Y+A    EP ++ + L   +WK+AM  EY+ALLKN TW L  LPP+
Sbjct: 1    MVTRAKAGIFKPKVYLATT--EPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLPPD 58

Query: 331  KQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIA 510
            ++ I CKW++K K + DGS+ ++KARLVA+G+ Q  G DY +T+SPVV+P +IRVVL+IA
Sbjct: 59   RKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLAIA 118

Query: 511  ISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWS 690
            +SKGW I Q+DVDNAFLNGD+  ++YM QP GF      + V KL K++YGLKQA RAW 
Sbjct: 119  VSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGFH-QGSPNTVCKLRKAIYGLKQAPRAWF 177

Query: 691  NKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQH 870
             K             K+DNSL+I   ++ ++ +L YVDD+IIT +S   I+  I  ++Q+
Sbjct: 178  QKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQALHQY 237

Query: 871  FSLKDLGDLHFFLGIEFTATKK-GMFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSLSK 1047
            F LKDLG LH FLGIE  +    G+ L Q +YV D++ +  M  A+ + TPM     L+ 
Sbjct: 238  FPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPASKLTN 297

Query: 1048 DEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAG 1227
            D      D + YR IVGALQY TITRP+I Y+VNK+ Q+M  PLD HWKA KR+ RYL G
Sbjct: 298  DGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLLRYLKG 357

Query: 1228 TTDYGLHFSSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVSRSS 1407
            T  +GLH+   + T +               RSTSG+CV+LG N+VSW +KKQ  VSRSS
Sbjct: 358  TLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKVVSRSS 417

Query: 1408 TEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRTKHLEL 1587
            TEAE+RS+A +  +I ++Q+L+ EL    +  P++W DNQ A+ L+ N V H+RTKH EL
Sbjct: 418  TEAEFRSMASLVAEIQYVQNLLSELGHINKNQPLIWCDNQGAVLLSLNPVLHTRTKHFEL 477

Query: 1588 DIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVIPKGSIELRGAE 1764
            D+ FIRE+V    I V+H+P+  QV D+LTK  S   F+ LR+KL V  + ++ LRG +
Sbjct: 478  DLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLSLRGGK 536


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  504 bits (1298), Expect = e-169
 Identities = 257/532 (48%), Positives = 355/532 (66%), Gaps = 6/532 (1%)
 Frame = +1

Query: 151  MVTRSKSGIYKPKAYMAEPLI--EPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLP 324
            M TRSKSG + P+ + +  L   EP+++++ L+ P W  AM +EY AL+ N TW L  LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 325  PNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLS 504
             +++ +GCKWV++ K NADGS+ K KARLVAKG+ Q+ GFD+ ET+SPV+KP TIR++L+
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 505  IAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRA 684
            +A++  W + QLDV+NAFLNG ++  +YM QPPGFE    + +V KL K+LYGLKQA R 
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFE-AGDKSLVCKLNKALYGLKQAPRQ 179

Query: 685  WSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMN 864
            W NK             K D SL+    Q+HT+ +L YVDDIIIT  S+  IQQ   +++
Sbjct: 180  WFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLD 239

Query: 865  QHFSLKDLGDLHFFLGIEFT-ATKKGMFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSL 1041
              FSLK LG L +FLGIE      K + L Q KY+ DL+ K  +  A G  +PM +N  L
Sbjct: 240  SIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKL 299

Query: 1042 SKDEGNPITDSTLYRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYL 1221
            S+   +   D T +R +VGALQYAT+TRPEI ++VNKV Q+M TPLD+HW AVKRI +YL
Sbjct: 300  SRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYL 359

Query: 1222 AGTTDYGLHFSSASTT---NLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPT 1392
             GT  YGLH   A+     +L              RRSTSGS +F G NL+SW S+KQ  
Sbjct: 360  KGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRV 419

Query: 1393 VSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRT 1572
            ++RSSTEAEYRS+A  + ++ W+Q+L++EL++ P   P +  DNQ A+++A+N V HS+T
Sbjct: 420  IARSSTEAEYRSIAQASAELTWIQALLQELKV-PFSTPTLLCDNQSAVAIAHNPVFHSKT 478

Query: 1573 KHLELDIHFIREKVMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGV 1728
            KH+E+D+ F+R+KV++K + V H+P+LDQ  D+LTKPLS   F  L +KL V
Sbjct: 479  KHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLWDKLKV 530


>gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1513

 Score =  533 bits (1372), Expect = e-169
 Identities = 278/558 (49%), Positives = 375/558 (67%), Gaps = 8/558 (1%)
 Frame = +1

Query: 79   IDLPIETDAIPAPN--VISSVT--STHSMVTRSKSGIYKPKAYMAEPLIEPQSLEEVLSQ 246
            I  PI++ A+  P+   + S++  + H M+TR K+G  KPK + A   +EP S+   L  
Sbjct: 951  ISQPIKSPAVTHPDNPPLPSISHHNNHPMITRCKTGSLKPKTFTAS--LEPASVRSALKD 1008

Query: 247  PEWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYKTKRNADGSLAKYKARLVAKGY 426
            P+W +AM  EY+AL+ N TW L PLPP+K+ IGCKW+++ K N DGS+ KYKARLVAKG+
Sbjct: 1009 PKWLQAMQAEYKALIDNNTWSLVPLPPHKKAIGCKWIFRVKENPDGSINKYKARLVAKGF 1068

Query: 427  TQIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLDVDNAFLNGDIDTKLYMAQPPG 606
             Q  GFD+ ET+SPV+KP TIR++L++A++  W I+Q+D++NAFLNG +  ++YM+QP G
Sbjct: 1069 LQTPGFDFTETFSPVIKPVTIRLILTLAVTYKWSIQQIDINNAFLNGLLQEEVYMSQPTG 1128

Query: 607  FELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXXXXXXKADNSLYIKHEQSHTLL 786
            FE    Q +V KL KSLYGLKQA RAW ++             K D SL I H+      
Sbjct: 1129 FE-ASDQSLVCKLHKSLYGLKQAPRAWYDRLTQELLQMGFVKSKCDPSLLIHHQHGACTY 1187

Query: 787  VLTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHFFLGIEFTATKKGMFLI-QKKY 963
            +L YVDDI+IT  + H I+  I K+N  F+LK LG++ +FLGIE      G  L+ Q KY
Sbjct: 1188 ILIYVDDILITGSAPHLIKSVIQKLNTKFALKQLGEVDYFLGIEVHHMPSGSLLLNQSKY 1247

Query: 964  VEDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTLYRQIVGALQYATITRPEIIYS 1143
            V+DL+ K  M   K + +PM++N  LSK   + +TD +LYR  VGALQYAT+TRP+I +S
Sbjct: 1248 VKDLLCKTNMDNCKPIGSPMVSNCKLSKFGTDAMTDPSLYRSTVGALQYATLTRPDIAFS 1307

Query: 1144 VNKVSQYMQTPLDTHWKAVKRITRYLAGTTDYG--LHFSSASTT-NLIXXXXXXXXXXXX 1314
            VNKV Q+M  PL+THWKAVKRI RYL GT  +G  LH S +S   +L             
Sbjct: 1308 VNKVCQFMAHPLETHWKAVKRILRYLKGTVTHGLLLHPSPSSPPFSLRAYSDADWANDQD 1367

Query: 1315 XRRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSLAHVTCDIIWLQSLMKELQIQP 1494
             RRSTSGSC++ G NL+SW SKKQ  V+RSSTEAEYRS+A+ T D++W+QS++ EL + P
Sbjct: 1368 DRRSTSGSCIYFGSNLISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSILHELHV-P 1426

Query: 1495 ERIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREKVMNKMISVRHVPSLDQVVDIL 1674
               P +  DN  A+SLA+N V HSRTKH+ELDIHF+REKV++K + V HVP+ DQ+ D L
Sbjct: 1427 FHTPTLLCDNLSAVSLAHNPVLHSRTKHIELDIHFVREKVLSKHLHVLHVPATDQLADPL 1486

Query: 1675 TKPLSGQFFVRLRNKLGV 1728
            TKPLS   +  +R+KL V
Sbjct: 1487 TKPLSPSNYASIRSKLKV 1504


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  530 bits (1364), Expect = e-169
 Identities = 280/580 (48%), Positives = 383/580 (66%), Gaps = 7/580 (1%)
 Frame = +1

Query: 13   TNHISPIT*SLSPFTR-YGGHITIDLPIETDAIPAPNVISSVTSTHSMVTRSKSGIYKPK 189
            T   S I+ S SP T  +    T+ +P  ++  P+ + I    + H M TR+K GI KP+
Sbjct: 825  TTSPSLISDSYSPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPR 884

Query: 190  AYMAEPL--IEPQSLEEVLSQPEWKEAMNKEYEALLKNKTWILCPLPPNKQVIGCKWVYK 363
                  L  +EP++ ++ LS P W  AM  EY ALL N TW L PLPP++  IGCKWV++
Sbjct: 885  LQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFR 944

Query: 364  TKRNADGSLAKYKARLVAKGYTQIVGFDYQETYSPVVKPSTIRVVLSIAISKGWRIRQLD 543
             K N +GS+ KYKARLVAKG+ Q  GFDY ET+SPV+KP T+R++L++A++  W I+QLD
Sbjct: 945  VKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLD 1004

Query: 544  VDNAFLNGDIDTKLYMAQPPGFELLKGQHMVYKLAKSLYGLKQASRAWSNKXXXXXXXXX 723
            V+NAFLNG ++ ++YM QPPGFE    +++V KL K++YGLKQA RAW +K         
Sbjct: 1005 VNNAFLNGTLEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLN 1063

Query: 724  XXXXKADNSLYIKHEQSHTLLVLTYVDDIIIT*DSNHEIQQFIGKMNQHFSLKDLGDLHF 903
                K D SL+I  + ++ + +L YVDDIIIT +++  +   + +++  FSLKDLGDL F
Sbjct: 1064 FYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDF 1123

Query: 904  FLGIEFTATKKG-MFLIQKKYVEDLIVKAGMQGAKGLSTPMITNHSLSKDEGNPITDSTL 1080
            FLGIE  +   G + L Q KY+ DL+ +  M+G+K +S+PMI+   LSK       D++L
Sbjct: 1124 FLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASL 1183

Query: 1081 YRQIVGALQYATITRPEIIYSVNKVSQYMQTPLDTHWKAVKRITRYLAGTTDYGLHF--- 1251
            YR +VGALQYATITRPEI +SVNKV Q+M  PL  HW AVKRI RYL GTT +GL     
Sbjct: 1184 YRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPA 1243

Query: 1252 SSASTTNLIXXXXXXXXXXXXXRRSTSGSCVFLGENLVSWSSKKQPTVSRSSTEAEYRSL 1431
            SS+S+ ++              RRSTSG+ +FLG NLVSW SKKQ  V+RSSTEAEYRSL
Sbjct: 1244 SSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSL 1303

Query: 1432 AHVTCDIIWLQSLMKELQIQPERIPIVWVDNQRAISLANNHVQHSRTKHLELDIHFIREK 1611
            A  T ++ W+Q+L+ EL++     PI++ DN   ++LA+N V H+RTKH+ELD+ F+REK
Sbjct: 1304 ALATTEVTWIQTLLSELKV-THSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFFVREK 1362

Query: 1612 VMNKMISVRHVPSLDQVVDILTKPLSGQFFVRLRNKLGVI 1731
            V  K + V HVP++DQ  D+LTK LS   F  LR+KL V+
Sbjct: 1363 VAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQVV 1402