BLASTX nr result
ID: Rehmannia29_contig00037716
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00037716
(615 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PON91412.1| Zinc finger, CCHC-type, partial [Trema orientalis] 65 1e-12
gb|PON65458.1| Zinc finger, CCHC-type, partial [Trema orientalis] 53 7e-10
gb|PON45986.1| Zinc finger, CCHC-type [Parasponia andersonii] 60 2e-08
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 47 1e-07
gb|KYP44960.1| Retrovirus-related Pol polyprotein from transposo... 47 5e-07
gb|KYP75308.1| hypothetical protein KK1_008029 [Cajanus cajan] 44 8e-07
gb|KYP46802.1| Retrovirus-related Pol polyprotein from transposo... 47 1e-06
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote... 42 5e-06
gb|PON94612.1| hypothetical protein TorRG33x02_096470 [Trema ori... 45 5e-06
ref|XP_018828324.1| PREDICTED: uncharacterized protein LOC108996... 51 5e-06
gb|PON69507.1| hypothetical protein TorRG33x02_259330 [Trema ori... 48 6e-06
gb|PON33922.1| hypothetical protein TorRG33x02_354190, partial [... 54 6e-06
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo... 37 1e-05
>gb|PON91412.1| Zinc finger, CCHC-type, partial [Trema orientalis]
Length = 414
Score = 65.1 bits (157), Expect(2) = 1e-12
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVAGVDT-SPMPDPAGILIV 403
KP CQ+CGK H+ALKC+ RFD+SF G ++STP + A A V T + + D A +
Sbjct: 230 KPVCQVCGKAGHIALKCYHRFDLSFQGDSSSSSTPQANQANQAFVTTNTAVNDGAWYMDS 289
Query: 404 ELQIYVTASMDNLSLNASQYQG 469
+VTA + NL+L A Y+G
Sbjct: 290 GATNHVTADLSNLALQA-DYKG 310
Score = 35.8 bits (81), Expect(2) = 1e-12
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
K +L +GNGS L+ISH G +VP+ITKNL+SIS
Sbjct: 311 KEKLAVGNGSQLSISHIG---SSQILTSKALQLNNILHVPEITKNLISIS 357
>gb|PON65458.1| Zinc finger, CCHC-type, partial [Trema orientalis]
Length = 374
Score = 53.1 bits (126), Expect(3) = 7e-10
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVAGVDTSPMPDPAGI 394
KP CQ+CGK H+A+KC+ RFD+S+ GP + S+ P A + + + PAG+
Sbjct: 123 KPICQVCGKAGHIAIKCYHRFDLSYQGPDTSGSSTQQP----ASPNQAYIATPAGV 174
Score = 33.9 bits (76), Expect(3) = 7e-10
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXX-YVPQITKNLLSIS 614
K +L +GNGS L I H G +VPQITKNL+SIS
Sbjct: 205 KEKLAVGNGSQLPIKHIGSSIFHSNLSCHKPLYLQNVLHVPQITKNLISIS 255
Score = 23.9 bits (50), Expect(3) = 7e-10
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 385 SWYFDSGATN 414
+WY DSGATN
Sbjct: 178 AWYMDSGATN 187
>gb|PON45986.1| Zinc finger, CCHC-type [Parasponia andersonii]
Length = 135
Score = 59.7 bits (143), Expect(2) = 2e-08
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVAGVDT-SPMPDPAGILIV 403
KP CQ+CGK H+ALKC+ RFD+SF G ++ST + A A V T + + D A +
Sbjct: 8 KPVCQVCGKAGHIALKCYHRFDLSFQGDSSSSSTLQANQANQAFVATNTAVNDGAWYMDS 67
Query: 404 ELQIYVTASMDNLSLNASQYQG 469
+VTA + NL L A Y+G
Sbjct: 68 GATNHVTADLSNLVLQA-DYKG 88
Score = 26.9 bits (58), Expect(2) = 2e-08
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTG 518
K + T+GNGS L+ISH G
Sbjct: 89 KQKFTVGNGSQLSISHFG 106
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 47.0 bits (110), Expect(3) = 1e-07
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAF 349
KP CQLCGK HV +C+ RFD +F P +S SP A+
Sbjct: 307 KPACQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAY 347
Score = 35.0 bits (79), Expect(3) = 1e-07
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 471 QLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
Q+ +GNG+ L+I H G +VP ITKNLLS+S
Sbjct: 397 QVHVGNGTGLSIKHIGQSEFLSPFSSKPLLLNHLLHVPSITKNLLSVS 444
Score = 20.8 bits (42), Expect(3) = 1e-07
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 385 SWYFDSGATN 414
+WY DSGA+N
Sbjct: 368 NWYPDSGASN 377
>gb|KYP44960.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 517
Score = 46.6 bits (109), Expect(2) = 5e-07
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATST-----PDSPHAFVAGVDTSPMPDPAG 391
+P CQ+CGK H+A+ C++RF+ F GP +A T S AF+A T + DP
Sbjct: 290 RPQCQICGKHGHLAIDCWQRFNQDFQGPPQANQTQYQGFSQSDQAFMATPTT--VLDPLW 347
Query: 392 ILIVELQIYVTASMDNLSLNASQYQGS 472
++T NLS+ + Y G+
Sbjct: 348 YPDSGASHHITNDESNLSVK-TDYTGN 373
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 471 QLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
++ +GNGS L+I H G +VP ITKNLLS+S
Sbjct: 375 RVKIGNGSGLSIKHIGNSKFYDSESNNHFVMNQLLHVPSITKNLLSVS 422
>gb|KYP75308.1| hypothetical protein KK1_008029 [Cajanus cajan]
Length = 380
Score = 43.9 bits (102), Expect(3) = 8e-07
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVA 355
KPTCQ+C K H+A++CF RFD S+ G + + +AF+A
Sbjct: 173 KPTCQVCEKIGHIAVQCFYRFDKSYMGQ-SSDDKQEKHNAFIA 214
Score = 29.3 bits (64), Expect(3) = 8e-07
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
K L +GNG L I G YVP+ITKNLLS+S
Sbjct: 256 KTSLVVGNGERLKIHAYGTAALDTCQRSLNLHDLL--YVPKITKNLLSVS 303
Score = 26.9 bits (58), Expect(3) = 8e-07
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 382 PSWYFDSGATN 414
P WYFDSGA+N
Sbjct: 228 PEWYFDSGASN 238
>gb|KYP46802.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 787
Score = 47.0 bits (110), Expect(2) = 1e-06
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVAGVDT-----SPMPDPAG 391
KPTCQ+CGK H+AL C+ R++ + +A +T P + T S + DP
Sbjct: 297 KPTCQICGKIGHIALNCYYRYNQEYQNHPQANNTQFQPSGYDISETTTLATPSTVQDPLW 356
Query: 392 ILIVELQIYVTASMDNLSLNASQYQGS 472
++T NLS+ S Y G+
Sbjct: 357 YPDSGASYHITHDESNLSMK-SAYTGT 382
Score = 33.5 bits (75), Expect(2) = 1e-06
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 474 LTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
+ +GN + L+ISH G +VP ITKNLLS+S
Sbjct: 385 VNIGNSTGLHISHVGHSYFHNPMSSKHFVRHNLLHVPSITKNLLSVS 431
>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
[Trifolium pratense]
Length = 1242
Score = 42.0 bits (97), Expect(3) = 5e-06
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVA 355
+P CQ+CGK H A +C+ RFD S+T S AFVA
Sbjct: 260 RPICQICGKFGHTAAQCYYRFDKSYTEKNHYAEGEGSHSAFVA 302
Score = 30.4 bits (67), Expect(3) = 5e-06
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 459 NIKAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
N K L +GNG L I +G YVP+ITKNLLS+S
Sbjct: 336 NGKNSLLVGNGEKLKILASGSTKLNDVNLRNVL------YVPEITKNLLSVS 381
Score = 25.0 bits (53), Expect(3) = 5e-06
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 388 WYFDSGATNLRYGKYGQPQ 444
WYFDSGA+N + GQ Q
Sbjct: 312 WYFDSGASNHVTHQSGQLQ 330
>gb|PON94612.1| hypothetical protein TorRG33x02_096470 [Trema orientalis]
Length = 329
Score = 44.7 bits (104), Expect(3) = 5e-06
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGP-IEATSTPDSPHA 346
+PT QLCG+ H+A++C+ RFD+SF G ++ S+ SP A
Sbjct: 129 RPTSQLCGRQGHLAIRCYHRFDISFQGTRQQSQSSSSSPQA 169
Score = 31.2 bits (69), Expect(3) = 5e-06
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
K +LT+GNG +L I H G +V I KNLLS+S
Sbjct: 214 KEKLTVGNGQALPIFHVGSSLLLYNTSHNPLLLNHTLHVLAIAKNLLSVS 263
Score = 21.6 bits (44), Expect(3) = 5e-06
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 385 SWYFDSGATN 414
+WY DSGA N
Sbjct: 187 AWYLDSGACN 196
>ref|XP_018828324.1| PREDICTED: uncharacterized protein LOC108996762 [Juglans regia]
Length = 477
Score = 51.2 bits (121), Expect(2) = 5e-06
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEA---------TSTPDSPHAFVAGVDTSPMP 379
+P CQ+C KP H+A C+ R+D S+ P A T++P S H + P
Sbjct: 273 RPMCQVCNKPGHMAAACYHRYDHSYPTPPPATFAANYSALTASPSSSHTW--------FP 324
Query: 380 DPAGILIVELQIYVTASMDNLSLNASQYQGS 472
D A + TA ++NL++++S YQGS
Sbjct: 325 DTAA------THHFTADINNLNVDSSVYQGS 349
Score = 26.9 bits (58), Expect(2) = 5e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 471 QLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSI 611
Q+++G+GSS+ I H G +VP I++NLLS+
Sbjct: 351 QVSIGDGSSIPIQHVG--SASFSSNTGNFLLTNLLHVPSISRNLLSV 395
>gb|PON69507.1| hypothetical protein TorRG33x02_259330 [Trema orientalis]
Length = 235
Score = 48.1 bits (113), Expect(2) = 6e-06
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGP---IEATSTPDSPHAFVAGVDTSPMPDPAGIL 397
+P CQ+ GK HVA+K + FD+SF P TS +SPH + T+ + D A L
Sbjct: 58 RPVCQVYGKAGHVAIKYYHHFDISFQSPDISSHGTSQGNSPHQAYLALPTT-VVDSAWYL 116
Query: 398 IVELQIYVTASMDNLSLNASQYQG 469
+VTA ++NL + S Y+G
Sbjct: 117 DSGATNHVTADLNNLYVK-SDYKG 139
Score = 30.0 bits (66), Expect(2) = 6e-06
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 465 KAQLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
K + + NG L+ISH G +VP I+KNLLSIS
Sbjct: 140 KEKFLVENGFKLSISHIGSNTFNTLNQSSSLLLKNILHVPCISKNLLSIS 189
>gb|PON33922.1| hypothetical protein TorRG33x02_354190, partial [Trema orientalis]
Length = 108
Score = 53.5 bits (127), Expect = 6e-06
Identities = 23/43 (53%), Positives = 26/43 (60%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGPIEATSTPDSPHAFVA 355
KP CQLCGKP H LKCF +FD SF GP ++ A VA
Sbjct: 50 KPQCQLCGKPRHTGLKCFHQFDYSFLGPASNPASTSHSSAMVA 92
>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1403
Score = 37.4 bits (85), Expect(3) = 1e-05
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 227 KPTCQLCGKPNHVALKCFKRFDMSFTGP 310
K CQ+CGK H+A C+ R+D +T P
Sbjct: 270 KQPCQVCGKIGHIAFHCWHRYDQQYTEP 297
Score = 37.0 bits (84), Expect(3) = 1e-05
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 471 QLTMGNGSSLNISHTGXXXXXXXXXXXXXXXXXXXYVPQITKNLLSIS 614
++ MGNG ++ I+HTG +VP ITKNLLS+S
Sbjct: 358 KIHMGNGQAIGINHTGTSFFHTPMSSKIFTLKELLHVPHITKNLLSVS 405
Score = 21.9 bits (45), Expect(3) = 1e-05
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 388 WYFDSGATN 414
WY DSGATN
Sbjct: 330 WYPDSGATN 338