BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00037633
         (3804 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023156358.1| uncharacterized protein LOC111589729 isoform...   684   0.0  
gb|PKA46982.1| putative mitochondrial protein [Apostasia shenzhe...   667   0.0  
ref|XP_022547700.1| uncharacterized protein LOC111200699 [Brassi...   636   0.0  
gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]      661   0.0  
emb|CAH66499.1| H0321H01.8 [Oryza sativa]                             663   0.0  
gb|PNX92266.1| retrotransposon-related protein [Trifolium pratense]   653   0.0  
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   612   0.0  
gb|AAO23078.1| polyprotein [Glycine max]                              633   0.0  
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   622   0.0  
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   617   0.0  
ref|XP_023919559.1| uncharacterized protein LOC112031110 [Quercu...   607   0.0  
gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   624   0.0  
dbj|GAU12466.1| hypothetical protein TSUD_229990, partial [Trifo...   621   0.0  
ref|XP_024188069.1| uncharacterized protein LOC112192533 [Rosa c...   613   0.0  
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt...   598   0.0  
gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   597   0.0  
gb|PNY00121.1| hypothetical protein L195_g023397 [Trifolium prat...   619   0.0  
dbj|GAU42077.1| hypothetical protein TSUD_326550 [Trifolium subt...   621   0.0  
gb|PNY17486.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   618   0.0  
gb|ABF94845.1| retrotransposon protein, putative, unclassified [...   655   0.0  

>ref|XP_023156358.1| uncharacterized protein LOC111589729 isoform X1 [Zea mays]
          Length = 1567

 Score =  684 bits (1766), Expect(2) = 0.0
 Identities = 339/697 (48%), Positives = 472/697 (67%), Gaps = 1/697 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K+  +LRGFLGLTGYYRKF++ YG+L+KPLT+LL++ +F W   A+TAF  LKDAM+T P
Sbjct: 866  KSHTELRGFLGLTGYYRKFVKGYGILAKPLTVLLQQKQFGWPPSAQTAFEALKDAMITTP 925

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LP+F++ FV+ETDA  TG+GAVL Q+G P+A+ SK L   N  LS  ++EFLA+LMA
Sbjct: 926  VLALPNFSETFVIETDACDTGIGAVLSQKGHPVAFYSKALGVKNSQLSTYEKEFLAILMA 985

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            ++KW+ YL    F+I+TD ++L +L DQ + T MQ+K +T+L GL + +QYKKG EN+  
Sbjct: 986  VEKWRCYLSRGPFVIRTDHRSLCHLQDQTLATDMQKKAMTKLAGLQFSVQYKKGAENKAA 1045

Query: 2228 DTLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            D LSR        +A++  TP WLQE+ NSY  D+    ++A   +       F ++ G+
Sbjct: 1046 DALSRV-AHNMELSAISATTPVWLQEITNSYELDTHAQSLLAELAVSSPNEQGFELKNGL 1104

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            +    RL +G +  L++ +++A H S  GGHSG+  TY R+K +F W  +K DV Q V+ 
Sbjct: 1105 IYKNNRLVVGQNVGLQTKLISAFHASPLGGHSGIQATYQRVKKLFLWNGLKADVEQFVRQ 1164

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C+  K ++  YPGLLQPL +P  +W+ ++MDFIEGLPKS G +VILVVVDR TKYAH
Sbjct: 1165 CHVCQQAKHEHCKYPGLLQPLPIPQSSWQDLSMDFIEGLPKSNGYSVILVVVDRLTKYAH 1224

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+A+ HPF+AS++A LF   + +LHG P +IVSDRDK+FTS FW+ELFKL G  L +SSA
Sbjct: 1225 FLAVKHPFTASHIAHLFFSQVVKLHGFPHTIVSDRDKVFTSTFWQELFKLSGTQLHLSSA 1284

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQSDGQTER+N CLE +LRC VH +P  W +WL  AE WYNT+YHTS+K + F+ALYG
Sbjct: 1285 YHPQSDGQTERVNQCLEMFLRCAVHNSPSQWAKWLDSAELWYNTSYHTSIKCSPFKALYG 1344

Query: 1328 YPPPLLSIGPYLDS-SINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEV 1152
              P L  I P  DS + +EA   + QRQ  ++V++ NL  A +R+K YAD +RS + F++
Sbjct: 1345 VEPNLGCI-PVTDSLNPSEAQLTLQQRQEFLEVIKTNLASAQSRMKHYADLNRSFRQFQI 1403

Query: 1151 GDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVP 972
            GD V+LKLQPF Q SV+ R   KLS +Y+GP+ +++K+G  AY+L L E + IHPVFHV 
Sbjct: 1404 GDLVYLKLQPFAQVSVAYRPCAKLSFKYFGPFKIVDKVGSAAYKLLLPESANIHPVFHVS 1463

Query: 971  LLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKA 792
             LK  V D T   ++LP      N    P ++LD R+VK+    V Q+LI+W  + V+ A
Sbjct: 1464 QLKTHVPDYTPVFTELPPTAFSENVTPNPERILDRRLVKKGSAAVTQILIKWEGIPVEMA 1523

Query: 791  TWEDKKFIEKKFPSFNPWGQGLSPPRGIVMNMAENGQ 681
            +WED   ++ +FP+ + WG   +   G V ++    Q
Sbjct: 1524 SWEDYTVLQSRFPNSSIWGPAGASGGGTVTSVLHQDQ 1560



 Score =  305 bits (782), Expect(2) = 0.0
 Identities = 163/354 (46%), Positives = 224/354 (63%), Gaps = 15/354 (4%)
 Frame = -3

Query: 3781 DMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAEC-----------KFISG 3635
            DM+LG DWL+  +P+  D+D+     +  G R+++Q + + +             ++  G
Sbjct: 520  DMVLGMDWLEKFSPMLCDWDRKWVEFSYEGVRIRLQGVGNKSAALLPEASHEQIQRWHKG 579

Query: 3634 PSLYKLMHMSCPTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGVEHQ 3455
              ++ +  +   T   E+  VT   P       +Q +L +F++V   P  LPPSR  +H 
Sbjct: 580  NEIWAVALLQQVTP--ELKVVTGQVPEC-----VQEVLDQFKEVFKTPDSLPPSREYDHT 632

Query: 3454 ILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDSTWR 3275
            I +  G+ P +  PYR S   K+EIER ++EML+A  I  S SPFASPV+LVKKKD +WR
Sbjct: 633  ISLLPGTTPVNVRPYRYSPLQKDEIERQVQEMLQAGTITRSVSPFASPVLLVKKKDGSWR 692

Query: 3274 LCVDYRYLNGLTIKYDYPIPVIDE----LFGAKFFSKIDLRSGYFQILMKPEHRFLTTFS 3107
             CVDYR LN +T+K  +P+P+IDE    L GAK FSK+D+ +G+ QI M  +    T F 
Sbjct: 693  FCVDYRKLNDITVKNKFPMPIIDEFIDELAGAKVFSKLDMAAGFHQIRMADQDEMKTAFK 752

Query: 3106 THNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLHLQ 2927
            TH+GH++F VMPFGL NAPATFQ LMN +F++ +RK VL+F DDIL+YS S E H++HLQ
Sbjct: 753  THHGHFQFRVMPFGLTNAPATFQCLMNAVFQQLMRKCVLIFMDDILVYSPSLETHVVHLQ 812

Query: 2926 QVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
            QVF  L  +QLY KRSKC F   +IEY+GHIIS  GV+ DP K  SM +WPTPK
Sbjct: 813  QVFQVLETHQLYAKRSKCAFALTQIEYLGHIISDKGVSTDPSKTESMRRWPTPK 866


>gb|PKA46982.1| putative mitochondrial protein [Apostasia shenzhenica]
          Length = 1535

 Score =  667 bits (1720), Expect(2) = 0.0
 Identities = 334/677 (49%), Positives = 459/677 (67%), Gaps = 4/677 (0%)
 Frame = -2

Query: 2765 TLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPV 2586
            ++++LRGFLGL GYYR+FI++YG +S+ LT LLKKD F W  +AE +F  LK  +   PV
Sbjct: 848  SVRELRGFLGLAGYYRRFIKDYGKISRGLTELLKKDAFKWDSQAEVSFSQLKQQLSQPPV 907

Query: 2585 LTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAI 2406
            L LPDFT+PFV+ETDA G G+GAVLMQ GRPIAY SK L   +Q L +  +E LA++ AI
Sbjct: 908  LALPDFTQPFVVETDACGAGIGAVLMQSGRPIAYFSKGLSTKHQQLPVYDKEMLAIVAAI 967

Query: 2405 QKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVD 2226
            QKW+ YL G+ F +KTD Q+L++LL+QRI TP QQKW+++L G D+EI Y+KG EN   D
Sbjct: 968  QKWRPYLLGNHFKVKTDHQSLRFLLEQRITTPTQQKWLSKLAGYDFEIIYRKGQENIAAD 1027

Query: 2225 TLSRR-DVKEDNCNALTTITPT-WLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGG 2052
             LSRR        NA+    PT  L  V NS+  D+    +I       T    +  +  
Sbjct: 1028 ALSRRTQTASITLNAVLEGMPTELLNGVRNSWNLDAKLLDIIRQLQNKITVNKPYTWQNN 1087

Query: 2051 IVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVK 1872
            ++R+KG+L IGSD  LR  ++  +H  + GGHSG   T  +LK +F+W  M       ++
Sbjct: 1088 LLRWKGKLVIGSDFALRQQLIQMIHMGSMGGHSGFIPTLHKLKSMFHWKGMGKATKIFIQ 1147

Query: 1871 SCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYA 1692
             C+ C+ NK +  +  G LQPL +P + W +++MDFIEGLPKS GK+ I VVVDR +KYA
Sbjct: 1148 ECNVCQQNKYETSSKSGPLQPLPIPEKVWTNVSMDFIEGLPKSNGKDTIFVVVDRLSKYA 1207

Query: 1691 HFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSS 1512
            HFMAL+HPFSA+ VA+ +LD +Y+LHG+P  IVSDRDKIF S FW+EL KL+ V + MS+
Sbjct: 1208 HFMALAHPFSATTVAQAYLDNVYKLHGMPEKIVSDRDKIFLSRFWQELLKLLKVQVQMST 1267

Query: 1511 AYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALY 1332
            AYHPQ+DGQTE +N CLE YLRCM  E PK W +WL L+E+WYNTNYH+SLK + ++ LY
Sbjct: 1268 AYHPQTDGQTEVVNRCLETYLRCMTVERPKEWLKWLPLSEWWYNTNYHSSLKCSPYEVLY 1327

Query: 1331 GYPPPLLSIGPYLDSS--INEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSF 1158
            G  PPL    PYL  +  ++     +  R+  +++L+ +L+QA NR+K  ADKHR E+ F
Sbjct: 1328 GQKPPLHV--PYLAGTAVVDAVDRSLQSRENFIKLLKHHLLQAMNRMKVQADKHRKEREF 1385

Query: 1157 EVGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFH 978
            EVGD V++KLQP+RQ+SVS R S KL+ +Y+GP+ +L K+G VAY+L L + +KIHPVFH
Sbjct: 1386 EVGDLVYVKLQPYRQDSVSHRMSRKLAPKYFGPFEILAKVGTVAYKLKLPDDAKIHPVFH 1445

Query: 977  VPLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVD 798
            V +LKK +S+          + + G  K EP+ +L  R + RK++ + QVLIQW+N   +
Sbjct: 1446 VSILKKSISNRPIEEVFPSELTTFGQLKAEPVAILKRRTILRKRHFLEQVLIQWSNTSPE 1505

Query: 797  KATWEDKKFIEKKFPSF 747
             A+WED + I  ++P F
Sbjct: 1506 DASWEDLETICSQYPHF 1522



 Score =  314 bits (804), Expect(2) = 0.0
 Identities = 171/367 (46%), Positives = 229/367 (62%), Gaps = 22/367 (5%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMT--FTVN-----LLGRRVKIQELTSLAECKF 3644
            L+  E  +MILG  WL     +  D+  +T  FT+N     L G R+   ++ S  +   
Sbjct: 486  LMPLESYNMILGVQWLSELGMVNWDFKNLTMKFTLNRNPIILRGTRIPFLQVVSEKQLDK 545

Query: 3643 ISGPSLYKLMHMSCPTEIEEMYWVTVDGPSFED-NP----------DMQILLTKFQDVIA 3497
                S   +    C +++  +       PSF   NP          ++ +LL  + D+  
Sbjct: 546  AILNSTTAIYLCFCYSQVHSI------NPSFSSYNPMNALNTQQQGELDMLLEFYVDIFM 599

Query: 3496 EPKGLPPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFA 3317
            EP+GLPP R  +HQI++K+G++P +  PYR     K  IER+I EM +A II++S SPF+
Sbjct: 600  EPRGLPPHRAQDHQIILKEGTDPINVKPYRYPALQKAAIERLIMEMKDAGIIRDSASPFS 659

Query: 3316 SPVILVKKKDSTWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQ 3149
            SP++L+KKKD +WRLCVDYR LN  TI+  +PIPVI    DEL G+ +FSK+DLRSGY+Q
Sbjct: 660  SPIVLIKKKDGSWRLCVDYRELNSKTIRDRFPIPVIEELLDELHGSTYFSKLDLRSGYWQ 719

Query: 3148 ILMKPEHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDIL 2969
            + M  E    T F TH GHYEFLVMPFGL NAP TFQ LMN IF+ YLR FVLVFFDDIL
Sbjct: 720  VRMMEEDIRKTAFRTHEGHYEFLVMPFGLTNAPVTFQKLMNSIFKPYLRIFVLVFFDDIL 779

Query: 2968 IYSKSWEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISS 2789
            +YS++W+EHL HL+ V   L  + L VKR+KC+F    IEY+GH IS  GV+ DP KI +
Sbjct: 780  VYSRTWDEHLHHLKTVLDVLATHSLKVKRNKCDFAVQSIEYLGHCISSRGVSTDPNKIRA 839

Query: 2788 MVQWPTP 2768
            +V+WP P
Sbjct: 840  IVEWPKP 846


>ref|XP_022547700.1| uncharacterized protein LOC111200699 [Brassica napus]
          Length = 2724

 Score =  636 bits (1641), Expect(2) = 0.0
 Identities = 323/678 (47%), Positives = 449/678 (66%), Gaps = 3/678 (0%)
 Frame = -2

Query: 2765 TLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPV 2586
            ++KQLR FLGL  YYR+FIR Y VLS+PLT LL+KD FLW  EA+TA   LK A+ ++PV
Sbjct: 2050 SVKQLRSFLGLANYYRRFIRGYSVLSRPLTTLLQKDGFLWNSEADTALDNLKSALSSSPV 2109

Query: 2585 LTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAI 2406
            L LPDF K FV+ETDAS TG+GAVLMQ+  PI ++S+ L P NQALS+ ++E +AV+ A+
Sbjct: 2110 LALPDFDKTFVVETDASNTGIGAVLMQDNHPICFISRALGPRNQALSVYEKELMAVVHAV 2169

Query: 2405 QKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVD 2226
            Q W  YL   +F+IKTDQ++LKY+++Q+  TP Q  W+++L+G D+EIQYK G EN   D
Sbjct: 2170 QAWSAYLAHRRFIIKTDQKSLKYMVEQKATTPFQHMWLSKLMGYDFEIQYKLGKENVAAD 2229

Query: 2225 TLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIV 2046
             LSR    +     L+     +   +   + +D    K+I+    DP ++P +      +
Sbjct: 2230 ALSRVSGSQLLHMTLSQAHQGFYDSLRLLWQSDPKLRKIISELQADPKSHPSYTFINEEL 2289

Query: 2045 RYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSC 1866
            R KG+L +G+D  +++ I   +H+SA GGHSG + T  R+K +F+W KM  +V   V++C
Sbjct: 2290 RRKGKLVVGNDVNIKTHIFRWLHDSAIGGHSGRDATLHRIKSLFFWSKMSLEVQNYVRNC 2349

Query: 1865 DTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHF 1686
            D C+ NK +N A PGLL PL +P   W+ +++DFIEGLP+S GK+ ILVV+DR +K AHF
Sbjct: 2350 DVCQKNKYENVAKPGLLNPLPIPNGVWESVSLDFIEGLPQSAGKHCILVVIDRLSKQAHF 2409

Query: 1685 MALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAY 1506
            +ALSHP++A  VA+ +LD +++LHGLP  I+SDRD  F S+ WKELF++ GV L  S+AY
Sbjct: 2410 LALSHPYTAIEVAQAYLDNVFKLHGLPKDIISDRDPTFLSDVWKELFRVHGVDLSYSTAY 2469

Query: 1505 HPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYGY 1326
            HPQ+DGQTE  N  LE YLRCM  E P+ W +WL LAE+WYNT YH+++++T F  +YG 
Sbjct: 2470 HPQTDGQTEVTNKTLETYLRCMTAETPQTWSKWLPLAEWWYNTTYHSAIRSTPFGIVYGQ 2529

Query: 1325 PPPLLSIGPYLDSSINEA--HDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEV 1152
            PPP  +  PYL      A     + +R+  + +L+ +L++A NR K  AD HRS +SF V
Sbjct: 2530 PPP--THLPYLPGESKSALVDRSLQKREEVISMLKFHLLRAQNRNKQAADSHRSPRSFTV 2587

Query: 1151 GDQVFLKLQPFRQNSVSLRK-SLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHV 975
            G  V+LKLQP+RQNS+  RK   KLS RYYGP+ VL+ +G  AYRLDL  G+ IH VFHV
Sbjct: 2588 GSYVYLKLQPYRQNSLKNRKVPHKLSPRYYGPFRVLDTVGSAAYRLDLPAGAAIHNVFHV 2647

Query: 974  PLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDK 795
              L K   +    SS LP    +     EP Q+L+ ++ KR+   V +VL+QW     ++
Sbjct: 2648 SQL-KLCPNPQAASSGLPQFYVDLGTSKEPEQILETKMAKRRNAAVTKVLVQWKGETPEQ 2706

Query: 794  ATWEDKKFIEKKFPSFNP 741
            ATWE  K+   K P F+P
Sbjct: 2707 ATWEFYKYFIAKHPQFHP 2724



 Score =  330 bits (845), Expect(2) = 0.0
 Identities = 174/360 (48%), Positives = 228/360 (63%), Gaps = 21/360 (5%)
 Frame = -3

Query: 3784 CDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLYKLMHM- 3608
            C+++LG  WL +  PI  D+  ++      G +  ++ +T    CK I G SL KLM   
Sbjct: 1690 CELVLGVQWLSTLGPILWDFLNLSMEFTFNGLQHHLRGVTKPG-CKLIKGASLNKLMLQQ 1748

Query: 3607 --------------SCPTEIEEMYW-VTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPS 3473
                          S P   E +Y  ++     F  +P +  LL  F DV +EP  LPP 
Sbjct: 1749 PQIALLQVRERAAESSPLSPESLYCHISAPQSEFSKDPALTQLLESFSDVFSEPTALPPF 1808

Query: 3472 R-GVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVK 3296
            R G +HQI ++ GS   +  PYR S   K+ I+ ++KEML+  IIQ S SP+ASP++LVK
Sbjct: 1809 REGFDHQIPLQSGSNLVNLRPYRYSSLQKDAIDEMLKEMLQQGIIQCSSSPYASPIVLVK 1868

Query: 3295 KKDSTWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEH 3128
            KKD +WRLCVDYR LN  T+K  YPIP++    DEL GAK+F+K+DL +G+ Q+ M P  
Sbjct: 1869 KKDGSWRLCVDYRGLNNQTVKDKYPIPLLEDLLDELGGAKYFTKLDLCAGFHQLRMSPSD 1928

Query: 3127 RFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWE 2948
             + T F +H GHYE+LVMPFGL NAP TFQSLMN +F++  RKF+LVFFDDIL+YS  WE
Sbjct: 1929 VYKTAFKSHAGHYEYLVMPFGLSNAPCTFQSLMNHVFQDISRKFLLVFFDDILVYSPDWE 1988

Query: 2947 EHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
             HL HLQ+VF  LR+ QLY+K SKC FG  EIEY+GH IS  GV  DP KI+++ QWPTP
Sbjct: 1989 SHLQHLQEVFSILRHQQLYLKASKCTFGATEIEYLGHFISAEGVRTDPSKIAAIKQWPTP 2048



 Score =  483 bits (1242), Expect(2) = 0.0
 Identities = 232/464 (50%), Positives = 322/464 (69%)
 Frame = -2

Query: 2765 TLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPV 2586
            ++KQLR FLGL  YYR+FIR Y VLS+PLT LL+KD FLW  EA+TA   LK A+ ++PV
Sbjct: 846  SVKQLRSFLGLANYYRRFIRGYSVLSRPLTTLLQKDGFLWNSEADTALDNLKSALSSSPV 905

Query: 2585 LTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAI 2406
            L LPDF K FV+ETDAS TG+GAVLMQ+  PI ++S+ L P NQALS+ ++E +AV+ A+
Sbjct: 906  LALPDFDKTFVVETDASNTGIGAVLMQDNHPICFISRALGPRNQALSVYEKELMAVVHAV 965

Query: 2405 QKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVD 2226
            Q W  YL   +F+IKTDQ++LKY+++Q+  TP Q  W+++L+G D+EIQYK G EN   D
Sbjct: 966  QAWSAYLAHRRFIIKTDQKSLKYMVEQKATTPFQHMWLSKLMGYDFEIQYKLGKENVAAD 1025

Query: 2225 TLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIV 2046
             LSR    +     L+     +   +   + +D    K+I+    DP ++P +      +
Sbjct: 1026 ALSRVSGSQLLHMTLSQAHQGFYDSLRLLWQSDPKLRKIISELQADPKSHPSYTFINEEL 1085

Query: 2045 RYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSC 1866
            R KG+L +G++  +++ I   +H+SA GGHSG + T  R+K +F+W KM  +V   V++C
Sbjct: 1086 RRKGKLVVGNNVNIKTHIFRWLHDSAIGGHSGRDATLHRIKSLFFWSKMSLEVQNYVRNC 1145

Query: 1865 DTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHF 1686
            D C+ NK +N A PGLL PL +P   W+ +++DFIEGLP+S GK+ ILVV+DR +K AHF
Sbjct: 1146 DVCQKNKYENVAKPGLLNPLPIPNGVWESVSLDFIEGLPQSAGKHCILVVIDRLSKQAHF 1205

Query: 1685 MALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAY 1506
            +ALSHP++A  VA+ +LD +++LHGLP  I+SDRD  F S+ WKELF++ GV L  S+AY
Sbjct: 1206 LALSHPYTAIEVAQAYLDNVFKLHGLPKDIISDRDPTFLSDVWKELFRVHGVDLRYSTAY 1265

Query: 1505 HPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTN 1374
            HPQ+DGQTE  N  LE YLRCM  E P+ W +WL LAE+WYNTN
Sbjct: 1266 HPQTDGQTEVTNKTLETYLRCMTAETPQTWSKWLPLAEWWYNTN 1309



 Score =  333 bits (855), Expect(2) = 0.0
 Identities = 175/360 (48%), Positives = 229/360 (63%), Gaps = 21/360 (5%)
 Frame = -3

Query: 3784 CDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLYKLMHM- 3608
            C+++LG  WL +  PI  D+  ++      G +  ++ +T    CK I G SL KLM   
Sbjct: 486  CELVLGVQWLSTLGPILWDFLNLSMEFTFNGLQHHLRGVTKPG-CKLIKGASLNKLMLQQ 544

Query: 3607 --------------SCPTEIEEMYW-VTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPS 3473
                          S P   E +Y  ++     F  +P +  LL  F DV +EP  LPP 
Sbjct: 545  PQIALLQVRERAAESSPLSPESLYCHISAPQSEFSKDPALTQLLESFSDVFSEPTALPPF 604

Query: 3472 R-GVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVK 3296
            R G +HQI ++ GS P +  PYR S   K+ I+ ++KEML+  IIQ S SP+ASP++LVK
Sbjct: 605  REGFDHQIPLQSGSNPVNLRPYRYSSLQKDAIDEMLKEMLQQGIIQCSSSPYASPIVLVK 664

Query: 3295 KKDSTWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEH 3128
            KKD +WRLCVDYR LN  T+K  YPIP++    DEL GAK+F+K+DL +G+ Q+ M P  
Sbjct: 665  KKDGSWRLCVDYRGLNNQTVKDKYPIPLLEDLLDELGGAKYFTKLDLCAGFHQLRMSPSD 724

Query: 3127 RFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWE 2948
             + T F +H GHYE+LVMPFGL NAP TFQSLMN +F++  RKF+LVFFDDIL+YS  WE
Sbjct: 725  VYKTAFKSHAGHYEYLVMPFGLSNAPCTFQSLMNHVFQDISRKFLLVFFDDILVYSPDWE 784

Query: 2947 EHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
             HL HLQ+VF  LR+ QLY+K SKC FG  EIEY+GH IS  GV  DP KI+++ QWPTP
Sbjct: 785  SHLQHLQEVFSILRHQQLYLKASKCTFGATEIEYLGHFISAEGVRTDPSKIAAIKQWPTP 844


>gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
          Length = 2396

 Score =  661 bits (1705), Expect(2) = 0.0
 Identities = 327/688 (47%), Positives = 469/688 (68%), Gaps = 3/688 (0%)
 Frame = -2

Query: 2759 KQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDK-FLWTHEAETAFLTLKDAMVTAPVL 2583
            K+LR FLGL G+YRKF++++G++S+PL  LLKK   F+WT +   AF  LK A+VTAPVL
Sbjct: 869  KELRCFLGLAGFYRKFVKHFGIISRPLFDLLKKHTLFVWTVDHSKAFEVLKQALVTAPVL 928

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LPDF++PF + TDAS  GVGAVLMQ G P+A++SK L P NQ LS  ++E++A+++AI 
Sbjct: 929  ALPDFSQPFCIHTDASYYGVGAVLMQSGHPLAFLSKALGPKNQGLSTYEKEYMAIILAIA 988

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            +W+ YL   +F+I TD ++L  L +QR+ T  QQK  T+L GL Y+I Y+KG +N   D 
Sbjct: 989  QWRSYLQLAEFIIYTDHRSLAQLNEQRLHTIWQQKMYTKLAGLQYKIVYRKGVDNGAADA 1048

Query: 2222 LSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIVR 2043
            LSR+  ++ +C A++   PTWLQEV+  Y  D    +++A   L+      F +  GI+R
Sbjct: 1049 LSRKVQEDSHCCAISHSVPTWLQEVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIR 1108

Query: 2042 YKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSCD 1863
            +K R+ +G + +L+  +L AMH++A GGHSG   TY ++K +FYWP M+ DV+Q V+SC 
Sbjct: 1109 HKNRIWLGGNLQLQQKVLQAMHDTAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCT 1168

Query: 1862 TCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHFM 1683
             C+ +KPD   YPGLLQPL VP QAW  I++DFIEGLP+S   N ILVVVD+F+KY HF+
Sbjct: 1169 VCQQSKPDRAKYPGLLQPLEVPPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFL 1228

Query: 1682 ALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAYH 1503
             L HPF+A+ VA++FLD +Y+LHGLPV+I+SDRD+IFTS+FW++LF++ G +L MSS+YH
Sbjct: 1229 PLLHPFTAAKVARVFLDNVYKLHGLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYH 1288

Query: 1502 PQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYGYP 1323
            PQSDGQTERLN CLE +LRC VH  P  W  WLS+AE+WYNT  H++L  T F+ LYG+ 
Sbjct: 1289 PQSDGQTERLNQCLETFLRCYVHTCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHT 1348

Query: 1322 PPLLSIGPYLDSSI--NEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
            P     G  +D+ +   E    + +R+   +V++ +L +A +R+K  ADK RSE+ F VG
Sbjct: 1349 P--RHFGILVDTVVPQPELETWLKERELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVG 1406

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            D V+LKLQP+ Q+SV+ R + KLS +++GP+ + +++G VAYRL L   S IHP+FHV  
Sbjct: 1407 DWVYLKLQPYIQSSVATRSNHKLSFKFFGPFQITDRLGSVAYRLALPASSSIHPIFHVSQ 1466

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LK+ +    + S  LP     G  ++ P ++L  R + R   ++ QV + W+ +  D AT
Sbjct: 1467 LKRVIGRDQRASPQLP--QDVGPIQV-PTRILQRRFIDRGGELIAQVKVVWSGMTEDLAT 1523

Query: 788  WEDKKFIEKKFPSFNPWGQGLSPPRGIV 705
            WED + +  +FP    W Q  +  +G V
Sbjct: 1524 WEDVEALRARFPKALIWDQAGARGQGNV 1551



 Score =  305 bits (780), Expect(2) = 0.0
 Identities = 162/342 (47%), Positives = 216/342 (63%), Gaps = 4/342 (1%)
 Frame = -3

Query: 3781 DMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLYKLMHMSC 3602
            DM++G DWL+S +P+ +D+ +    +   G  V +Q  T+      +   ++ +L+ M  
Sbjct: 538  DMVVGMDWLESFSPMRVDWAQKWLIIPYQGSSVLLQGNTA-----GVPADTVIELLFMES 592

Query: 3601 PTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGVEHQILIKQGSEPKH 3422
             + +           S + +P +Q LL +F  V AEP+GLPPSR  +H I + +G++P  
Sbjct: 593  ASSVSS---------SPDSHPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVS 643

Query: 3421 QFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDSTWRLCVDYRYLNGL 3242
              PYR   A K++IE+ ++EML   +IQ S S FASPV+LVKKKD TWR CVDYRYLN L
Sbjct: 644  VRPYRYPPALKDKIEKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNAL 703

Query: 3241 TIKYDYPIPV----IDELFGAKFFSKIDLRSGYFQILMKPEHRFLTTFSTHNGHYEFLVM 3074
            T+K  YP+PV    IDEL  +K+FSK+DLR+GY QIL+KP   + T F TH GHYEF VM
Sbjct: 704  TLKSKYPVPVFDQLIDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVM 763

Query: 3073 PFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLHLQQVFLTLRNNQL 2894
             FGL  AP TF S MN+  +  LRK  LVFFDDILIYSKS+EEHLLHLQ+V   L ++  
Sbjct: 764  AFGLTGAPNTFLSAMNETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNW 823

Query: 2893 YVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
             VK SKC F +    Y+GHIIS  GV+  P KI ++  W  P
Sbjct: 824  KVKLSKCEFAKTNTAYLGHIISEQGVSTYPSKIQAISSWAVP 865


>emb|CAH66499.1| H0321H01.8 [Oryza sativa]
          Length = 1602

 Score =  663 bits (1710), Expect(2) = 0.0
 Identities = 335/688 (48%), Positives = 467/688 (67%), Gaps = 3/688 (0%)
 Frame = -2

Query: 2759 KQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKD-KFLWTHEAETAFLTLKDAMVTAPVL 2583
            K+LRGFLGL GYYRKF++N+G++SKPLT LL+K   ++WT E + AF TLK A+ +APVL
Sbjct: 850  KKLRGFLGLAGYYRKFVKNFGIISKPLTQLLRKGVPYVWTTETDNAFHTLKQALASAPVL 909

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
            +LPDF K F +ETDAS  G+GAVL Q+  PIAY+SK L P  + LS  ++E +A+L+A+ 
Sbjct: 910  SLPDFQKTFTVETDASDCGIGAVLSQDKHPIAYVSKALGPRTRGLSTYEKECMAILLAVD 969

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
             W+ YL   +F+I TD  +L +L DQR+ TP Q K  T+LLGL Y+I Y+KG+ N   D 
Sbjct: 970  HWRSYLQHGEFIILTDHHSLMHLSDQRLHTPWQHKAFTKLLGLQYKICYRKGSSNAAADA 1029

Query: 2222 LSRRDVKEDNCN--ALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            LSR+  ++ N    A+++  P WL EV   Y  D+  AK+++   + P  +  + +  GI
Sbjct: 1030 LSRK-FQDSNSEIFAISSSVPQWLMEVTQGYEKDAQAAKLLSTLAIHPEKHIHYFLDNGI 1088

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            +RYK R+ +G++P+L+  ++  +H S  GGHSG   TY ++K +F WP MK  + + V+ 
Sbjct: 1089 IRYKNRIWVGNNPELQLKLIRELHASPVGGHSGFPVTYRKIKQLFAWPNMKKMIKESVQR 1148

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C   KPD   YPGLLQPL VP  +W+ +++DFIEGLPKS G N ILVVVDRF+KYAH
Sbjct: 1149 CQVCLQAKPDRLKYPGLLQPLPVPEGSWQAVSLDFIEGLPKSAGYNCILVVVDRFSKYAH 1208

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+AL HPF+A +VA+ ++  IY+LHGLP +IVSDRDKIFTS  W++LF   G  L  SSA
Sbjct: 1209 FVALKHPFTAIDVAQAYMFHIYKLHGLPQTIVSDRDKIFTSQLWEQLFLRAGTKLHYSSA 1268

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQSDGQTER+N CLE YLRC VH  P  W+ WL LAE+WYN+ YH+SL TT F+ LYG
Sbjct: 1269 YHPQSDGQTERVNQCLEIYLRCFVHSTPSKWYSWLHLAEYWYNSTYHSSLGTTPFEVLYG 1328

Query: 1328 YPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
            YPP    I    D +I E    +  R+   Q+++ +L +A  ++K +ADK RS + F +G
Sbjct: 1329 YPPNHFGISS-RDCAIPELSVWLRDRKFMQQLVQQHLHRAQQQMKHFADKKRSFRQFTIG 1387

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            D V+LKLQP+ Q+SV+ R + KL+ +YYGP+ V++K+G VAY+L L E S +HPVFHV L
Sbjct: 1388 DWVYLKLQPYVQSSVAPRANHKLAFKYYGPFQVIDKLGTVAYKLQLPETSSVHPVFHVSL 1447

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LK      TQP+  L L     ++++ PL +LD R+ K+  +++ QVLI W++   ++AT
Sbjct: 1448 LKP-AKGFTQPAF-LQLPSEVVSWQL-PLAILDQRLAKKGNSVITQVLIHWSHTVPEQAT 1504

Query: 788  WEDKKFIEKKFPSFNPWGQGLSPPRGIV 705
            WED + ++ +FP+   WGQ      GIV
Sbjct: 1505 WEDLEDLKTRFPNALAWGQAKIQGEGIV 1532



 Score =  296 bits (758), Expect(2) = 0.0
 Identities = 159/343 (46%), Positives = 214/343 (62%), Gaps = 5/343 (1%)
 Frame = -3

Query: 3781 DMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQE-LTSLAECKFISGPSLYKLMHMS 3605
            D+ILG DWL+  +P+++D+          G+ V++Q  L    +C  I+   L  L  + 
Sbjct: 505  DIILGMDWLELFSPMQVDWANKWMEFLYQGKLVRLQGILPKSVQCSSITNHQLCGLNRLG 564

Query: 3604 CPTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGVEHQILIKQGSEPK 3425
              + + ++  VT +  S       +I+   F D+  EP+GLPP R  +H I +  G++P 
Sbjct: 565  SLSYLVQLQSVTHEENSSVPEAVKEII-QDFHDIFQEPEGLPPRRACDHTINLIPGAKPI 623

Query: 3424 HQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDSTWRLCVDYRYLNG 3245
            +  PYR + A K+EIE+ I EML + +IQ+S+SPF+SP ILVKKKD TWRL +DYR LN 
Sbjct: 624  NLRPYRHNPALKDEIEKQITEMLSSGVIQHSQSPFSSPAILVKKKDGTWRLVIDYRQLNN 683

Query: 3244 LTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEHRFLTTFSTHNGHYEFLV 3077
            +T+K  YP+PVI    DEL GAK+F+K+DLRSGY QI M       T F TH+GHYE+ V
Sbjct: 684  ITVKTKYPVPVIEELLDELTGAKWFTKLDLRSGYHQIRMAEGEEPKTAFQTHSGHYEYKV 743

Query: 3076 MPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLHLQQVFLTLRNNQ 2897
            M FGL  APATF   MN   +  LRKF LVFFDDILIYS +   HL HL+QV   LRN+ 
Sbjct: 744  MSFGLTGAPATFLKAMNDTLKSVLRKFALVFFDDILIYSPTLSSHLEHLKQVLQLLRNHH 803

Query: 2896 LYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
              VK SKC+FGQ ++ Y+GHII   GVA DP K+  ++ W  P
Sbjct: 804  WKVKLSKCSFGQQQLSYLGHIIGVNGVATDPSKVQDVLDWAVP 846


>gb|PNX92266.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1479

 Score =  653 bits (1685), Expect(2) = 0.0
 Identities = 322/677 (47%), Positives = 464/677 (68%), Gaps = 1/677 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K  KQLRGFLGL GYYR+F++++G ++KPLT +LK+D FLW+ E+  AF  LK A+++AP
Sbjct: 806  KNPKQLRGFLGLAGYYRRFVKDFGKIAKPLTDMLKRDSFLWSSESTAAFTELKQALISAP 865

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            ++ LPDF++ FV+ETDASG G+GAVLMQ+  PIAY+SK+L P  QA+S+ +RE LA++ A
Sbjct: 866  LMRLPDFSQKFVVETDASGKGIGAVLMQQHHPIAYISKSLGPKQQAMSVYERELLAIVYA 925

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            +QKW  YL    F+IKTDQ+++K++LDQ++ T  QQ W+ +L+G D+EIQYK+G  N   
Sbjct: 926  VQKWGAYLSHAPFIIKTDQRSIKHILDQKLNTSFQQAWVAKLMGFDFEIQYKEGAHNLAA 985

Query: 2228 DTLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            D LSRR+  E     L + +P   + +  S+  D    K+IA   L+  ++P F      
Sbjct: 986  DALSRREGAELLPMLLNSASPDLYESIKASWTRDPSVQKLIADLVLNHNSHPKFSWVRNE 1045

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            +R +G+L IG DP L++ IL  +H+S+ GGHSG + T  R+K +FYW  M  D+   V++
Sbjct: 1046 LRRRGKLVIGQDPHLKNSILRWLHDSSVGGHSGRDITAARVKSLFYWKGMAKDIQIYVRN 1105

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C+ NK D  A PGLLQPL +P++ W  I+MDFIEGLP S GK VI VVVDR +KYAH
Sbjct: 1106 CAVCQRNKADLSASPGLLQPLPIPSKIWVDISMDFIEGLPPSAGKQVIFVVVDRLSKYAH 1165

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+ LSHP++A ++AK+FLD +++LHGLP SI SDRD IF S FW E FKL GV+L+ S+A
Sbjct: 1166 FIPLSHPYTAVDIAKVFLDNVFKLHGLPESITSDRDPIFLSTFWNEFFKLQGVALNKSTA 1225

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQSDGQTE +N  +E YLRCM  E P  W +W+ +AE+WYN+N+H++++TT ++ +YG
Sbjct: 1226 YHPQSDGQTEIVNKAVETYLRCMCSEKPTSWSQWIPMAEYWYNSNFHSAIQTTPYEVVYG 1285

Query: 1328 YPPPL-LSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEV 1152
             PPP+ L   P   SS+     L++ R+ A+++L+ +L++A NR+   ADKHRS++ FE+
Sbjct: 1286 QPPPIHLPYLPGASSSVTVDGSLLA-REEAIKLLKFHLLRAQNRMIQQADKHRSDRKFEI 1344

Query: 1151 GDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVP 972
            GD V+LKL P+RQ SV      KL  +++GP+ V++K+G VAY+L+L     IH VFHV 
Sbjct: 1345 GDFVYLKLHPYRQLSVKPHLHHKLLPKFFGPFKVIDKVGHVAYQLELPSSVAIHNVFHVS 1404

Query: 971  LLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKA 792
             LK   +  + P   +P+      F   P  +LD ++VKR +    +VL++W N   + A
Sbjct: 1405 QLKLCPNPASNPI--VPIPAGVDQFHRVPEAILDRKMVKRGRTAATKVLVKWQNTSPELA 1462

Query: 791  TWEDKKFIEKKFPSFNP 741
            TWE    + +KFP+F+P
Sbjct: 1463 TWEFYYDLLEKFPNFHP 1479



 Score =  303 bits (776), Expect(2) = 0.0
 Identities = 165/360 (45%), Positives = 224/360 (62%), Gaps = 19/360 (5%)
 Frame = -3

Query: 3787 GC-DMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY---- 3623
            GC D+ILG  WLKS  PI  D+DK+       GR+  ++   +    K ++  S      
Sbjct: 449  GCSDLILGIQWLKSLGPILWDFDKLQMEFTTQGRKFVLRGAKT-PSIKLVNNKSFAHAVQ 507

Query: 3622 ---KLMHMSCPTEIEE------MYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSR 3470
               +L  M+  T +        +   T DG      P +  LL  FQD+  EP  LPP R
Sbjct: 508  NGAELCLMTLNTHVPVFDVPTCLILSTADGSGCTP-PLIDQLLHVFQDIFTEPSSLPPHR 566

Query: 3469 -GVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKK 3293
             G +H+I +K GSEP +  PYR S   K  I+ ++  ML+  IIQ+S SPF+SP +LV+K
Sbjct: 567  VGFDHKIPLKDGSEPFNLKPYRYSLIQKTIIDNLVDVMLDQGIIQHSTSPFSSPTVLVRK 626

Query: 3292 KDSTWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEHR 3125
            KD +WRLCVD+R LN  TIK  +PIP+I    DEL GA  FSK+DL+SGY Q+ M     
Sbjct: 627  KDGSWRLCVDFRRLNQFTIKDRFPIPLIEDLLDELAGASIFSKLDLKSGYHQLRMAEGEE 686

Query: 3124 FLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEE 2945
              T F TH+GH+EFLVMPFGL NAPA+FQSLMN +F+ +LR+FV++FFDD+L+YSKS +E
Sbjct: 687  HKTAFKTHSGHFEFLVMPFGLTNAPASFQSLMNHLFKPFLRRFVIIFFDDLLVYSKSLQE 746

Query: 2944 HLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
            H+ HL  +F  +R +QL++ R KC+FG   +EY+GH I+  GV+ DP KI ++  WP PK
Sbjct: 747  HIEHLSSIFKLIRVHQLFLNRKKCSFGTERVEYLGHFITKEGVSTDPAKIQAVRDWPFPK 806


>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1502

 Score =  612 bits (1577), Expect(2) = 0.0
 Identities = 322/689 (46%), Positives = 434/689 (62%), Gaps = 2/689 (0%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI++Y  ++ PLT LLKK+ + WT +AE AF  LK+A+ TAPVL
Sbjct: 804  VKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWTEQAEVAFHQLKNAITTAPVL 863

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LP+F +PF+LETDASG G+GAVL Q+G PIAY SK L P NQ  S   RE LA+  AI 
Sbjct: 864  ILPNFKEPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIA 923

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL GHKF+I+TDQ++L+ L++Q + TP QQ+W+ + LG D+ I+YK G EN   D 
Sbjct: 924  KFRHYLLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADA 983

Query: 2222 LSRRDVKEDNCNALTTITPTW--LQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            LSR  V       +    P W  L +V  +  ND+   +V+    +       + +R G+
Sbjct: 984  LSRVMV-------MAWSEPKWQLLDQVRRALENDNQLREVMQNYAIGKAPV-QYSMREGL 1035

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            + +K RL I  +  L   +L   H S  GGH+G+  T  R+K  FYWP MK D+ + V  
Sbjct: 1036 LYWKQRLVIPKNDDLLQKLLFEFHTSPIGGHAGITRTIARIKAQFYWPDMKKDIAEYVHK 1095

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C+  K  N +  GLLQPL +P+Q W+ I MDFI GLP S G   I+VVVDR TK AH
Sbjct: 1096 CVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRLTKSAH 1155

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+ +   +++  VA+ F+  I +LHG+P SIVSDRDK+FTS FW+ LFK+ G SL MSSA
Sbjct: 1156 FIPMKTDYTSKTVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQHLFKMQGTSLAMSSA 1215

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQ+DGQTE LN  LE +LRC    NPK WF+ +S AE+WYNT + TS+  T F+ALYG
Sbjct: 1216 YHPQTDGQTEVLNKTLELFLRCFTFHNPKSWFKVMSWAEYWYNTAFQTSIGMTPFKALYG 1275

Query: 1328 YPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
              PP L+             + + +R + +Q L+ NL +A   +K  ADKHR E SF+VG
Sbjct: 1276 RDPPYLTKYEVQVDDPPALREELMERDQILQQLKTNLERAQQYMKQQADKHRREVSFKVG 1335

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            D V +KLQP++Q SV+LRK+ KL  RY+GP+ V+  +G VAY+L L E +KIHPVFHV  
Sbjct: 1336 DLVLVKLQPYKQQSVALRKNQKLGMRYFGPFEVIACVGKVAYKLQLPENAKIHPVFHVSQ 1395

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LK       +    LPL  S+     +P  +L  R + R    V Q+ IQW     ++A+
Sbjct: 1396 LKPFHGTSQEQYLPLPLTMSDTGPIFQPATILQARTIVRGNKKVHQLQIQWDLNSPEEAS 1455

Query: 788  WEDKKFIEKKFPSFNPWGQGLSPPRGIVM 702
            WED   ++ KFP+ N   + +    GIVM
Sbjct: 1456 WEDLDELQNKFPNINLEDKVVFKGEGIVM 1484



 Score =  343 bits (880), Expect(2) = 0.0
 Identities = 182/359 (50%), Positives = 235/359 (65%), Gaps = 14/359 (3%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            LL   G D+ILG  WL +  P   DY  +T    L G+ V    LT    C+  S   L+
Sbjct: 447  LLPIAGADVILGASWLATLGPHVADYASLTLKFFLKGQFVT---LTGEPMCR-PSQAQLH 502

Query: 3622 KLMHMSCPTEIEEMYWV-----TVDGPSFEDNPD-----MQILLTKFQDVIAEPKGLPPS 3473
                ++    I E + V     TV+   F+D PD     + +LL +++ +   P  LPP+
Sbjct: 503  HFKRLATTDSIAECFTVQCIKPTVEEDIFKDLPDNIEPEIAMLLHQYRGLFQTPTTLPPN 562

Query: 3472 RGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKK 3293
            R   H I + +GS P    PYR  H+ K +IE +I+EML+  IIQNS SPF+SP+ILVKK
Sbjct: 563  RSHNHSIPLLEGSAPVKVKPYRYPHSQKQQIELMIQEMLQQGIIQNSNSPFSSPIILVKK 622

Query: 3292 KDSTWRLCVDYRYLNGLTIKYDYPIPVIDELF----GAKFFSKIDLRSGYFQILMKPEHR 3125
            KD TWR C DYR LN +T+K  +PIP +DEL     GAK+FSK+DLRSGY QIL++PE R
Sbjct: 623  KDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELHGAKYFSKLDLRSGYHQILLQPEDR 682

Query: 3124 FLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEE 2945
            + T F TH GHYE+LVMPFGL NAPATFQSLMN IF+  LRK+VLVFFDDILIYS +W+E
Sbjct: 683  YKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLVFFDDILIYSSNWQE 742

Query: 2944 HLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
            HL HL  V   L++N LYVK SKC+FG LEIEY+GH+++  GV++D  K+ ++V WPTP
Sbjct: 743  HLHHLDTVLTVLQDNTLYVKLSKCSFGVLEIEYLGHVVTGQGVSMDKDKVQAVVNWPTP 801


>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score =  633 bits (1632), Expect(2) = 0.0
 Identities = 332/717 (46%), Positives = 457/717 (63%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI++Y  ++ PLT LL+KD FLW +EAE AF+ LK AM  APVL
Sbjct: 824  VKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVL 883

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
            +LPDF++PF+LETDASG GVGAVL Q G PIAY SK L P  Q  S   RE LA+  A+ 
Sbjct: 884  SLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS 943

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL G+KF+I+TDQ++LK L+DQ + TP QQ W+ + LG D++I+YK G +N+  D 
Sbjct: 944  KFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADA 1003

Query: 2222 LSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIVR 2043
            LSR  +      A +     +L+E+     +D    K +            + VR G++ 
Sbjct: 1004 LSRMFML-----AWSEPHSIFLEELRARLISDPHL-KQLMETYKQGADASHYTVREGLLY 1057

Query: 2042 YKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSCD 1863
            +K R+ I ++ ++ + IL   H+S  GGH+G+  T  RLK  FYWPKM++DV   ++ C 
Sbjct: 1058 WKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCL 1117

Query: 1862 TCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHFM 1683
             C+  K +N    GLLQPL +P Q W+ + MDFI GLP S G +VI+VV+DR TKYAHF+
Sbjct: 1118 ICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFI 1177

Query: 1682 ALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAYH 1503
             L   +++  VA+ F+  I +LHG+P SIVSDRD++FTS FW+ LFKL G +L MSSAYH
Sbjct: 1178 PLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYH 1237

Query: 1502 PQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYGYP 1323
            PQSDGQ+E LN CLE YLRC  +E+PK W + L  AEFWYNT YH SL  T F+ALYG  
Sbjct: 1238 PQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGRE 1297

Query: 1322 PPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVGDQ 1143
            PP L+          E  + ++ R   +  L+ NL +A   +K  ADK R + SF++GD+
Sbjct: 1298 PPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDE 1357

Query: 1142 VFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPLLK 963
            V +KLQP+RQ+S  LRK+ KLS RY+GP+ VL KIG VAY+L+L   ++IHPVFHV  LK
Sbjct: 1358 VLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLK 1417

Query: 962  KRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKATWE 783
                    P   LPL  +E    ++P+++L  RI+ R  N + Q+L+QW N   D+ATWE
Sbjct: 1418 PFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWE 1477

Query: 782  DKKFIEKKFPSFNPWGQGLSPPRGIVMNMAENGQDFGGKLIGAGGRNANWRKTNLED 612
            D + I+  +P+FN   + +    G V N    G+        +  R  + +  + E+
Sbjct: 1478 DIEDIKASYPTFNLEDKVVFKGEGNVTNGMSRGEKVNNTAESSSERGLHNKLADFEE 1534



 Score =  320 bits (821), Expect(2) = 0.0
 Identities = 168/362 (46%), Positives = 227/362 (62%), Gaps = 17/362 (4%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFT-------VNLLGR------RVKIQELTS 3662
            LLQ  G D+ILG  WL +  P   DY  +T         + L G       + ++     
Sbjct: 467  LLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRR 526

Query: 3661 LAECKFISGPSLYKLMHMSCPTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGL 3482
            L   K I      +L+    P +  +     +D       P++ ILL  +  V A P  L
Sbjct: 527  LQNTKSIEECFAIQLIQKEVPEDTLKDLPTNID-------PELAILLHTYAQVFAVPASL 579

Query: 3481 PPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVIL 3302
            PP R  +H I +KQGS P    PYR  H  K++IE++I+EML   IIQ S SPF+ P++L
Sbjct: 580  PPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILL 639

Query: 3301 VKKKDSTWRLCVDYRYLNGLTIKYDYPIPVIDELF----GAKFFSKIDLRSGYFQILMKP 3134
            VKKKD +WR C DYR LN +T+K  +P+P +DEL     GA++FSK+DLRSGY QIL++P
Sbjct: 640  VKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQP 699

Query: 3133 EHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKS 2954
            E R  T F TH+GHYE+LVMPFGL NAPATFQ LMN+IF+  LRKFVLVFFDDILIYS S
Sbjct: 700  EDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSAS 759

Query: 2953 WEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWP 2774
            W++HL HL+ V  TL+ +QL+ + SKC+FG  E++Y+GH +S  GV+++  K+ +++ WP
Sbjct: 760  WKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWP 819

Query: 2773 TP 2768
            TP
Sbjct: 820  TP 821


>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1240

 Score =  622 bits (1604), Expect(2) = 0.0
 Identities = 330/689 (47%), Positives = 439/689 (63%), Gaps = 2/689 (0%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI++Y  ++ PLT LLKK+ + W  +A+ AF  LK+A+ +APVL
Sbjct: 529  VKQLRGFLGLTGYYRRFIKSYAKIAAPLTDLLKKESYRWNDQADIAFQQLKEAVTSAPVL 588

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LP+F KPF+LETDASG G+GAVL Q+  PIAY SK L P NQ  S   RE LA+  AI 
Sbjct: 589  ALPNFHKPFILETDASGVGIGAVLHQDNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIA 648

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL GH+F+I+TDQ++L+ L+DQ + TP QQ+W+ + LG D+ I+YK G EN   D 
Sbjct: 649  KFRHYLLGHRFIIRTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDFVIEYKPGKENLAADA 708

Query: 2222 LSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVI--AANTLDPTTYPDFIVRGGI 2049
            LSR         A +     + Q+V  +   D    ++I      L PT Y    VR GI
Sbjct: 709  LSRLMTL-----AWSEPQYNFTQQVKEAIQQDDNLLEIIQKCLQGLAPTNYT---VREGI 760

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            + +K R+ I     L   IL   H S  GGH+G+  T  R+K  FYW  MK D+   V++
Sbjct: 761  LYWKHRMVIPPKAALIQQILEEFHTSPIGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQN 820

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C+  K  N    GLLQPL +P+Q W+ I MDFI GLP S G   I+VVVDR TKYAH
Sbjct: 821  CLVCQQAKTTNTLPAGLLQPLPIPSQVWEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAH 880

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+A+   +++ +VA+ F+  + +LHG+P SIVSDRDK+FTS FW+ LFKL G +L M+SA
Sbjct: 881  FIAMKTDYTSKSVAEAFMHNVVKLHGMPKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSA 940

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQSDGQTE LN  LE YLRC    NPK WF+ LS +EFWYNT + TS+  T F+ALYG
Sbjct: 941  YHPQSDGQTEVLNKGLELYLRCFSFNNPKSWFKMLSWSEFWYNTAFQTSIGMTPFKALYG 1000

Query: 1328 YPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
              PP L+      S      + + +R + +Q L+DNLI+A   +K  ADKHRS+ S ++G
Sbjct: 1001 RDPPYLTRYVAQASDPPTLQEELMERDKILQQLKDNLIRAQQYMKKQADKHRSDISLKIG 1060

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            D V +KLQP+RQ+SV+LRK+ KL  RY+GP+ ++ ++G VAY+L L + +KIHPVFHV  
Sbjct: 1061 DLVLVKLQPYRQHSVALRKNQKLGLRYFGPFEIIARVGEVAYKLKLPDDAKIHPVFHVSQ 1120

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LK       +    LPL  ++    I+P+ VL  R V R    + QVLIQW      +AT
Sbjct: 1121 LKPFKGVADEQYLPLPLTMTDIGPSIQPIDVLQVRTVIRGSQQIHQVLIQWDQYPAAQAT 1180

Query: 788  WEDKKFIEKKFPSFNPWGQGLSPPRGIVM 702
            WED   I++KFPS N   +      GIVM
Sbjct: 1181 WEDITTIQEKFPSLNLEDKVAFNGDGIVM 1209



 Score =  329 bits (844), Expect(2) = 0.0
 Identities = 172/359 (47%), Positives = 230/359 (64%), Gaps = 14/359 (3%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            LL   G D+ILG  WL +  P   DY  +T    L G+ V +   + +      S    +
Sbjct: 172  LLPVAGADVILGASWLATLGPHVADYASLTLKFFLEGKFVTLVGESEVRP----SAAQFH 227

Query: 3622 KLMHMSCPTEIEEMYWV-----TVDGPSFED-----NPDMQILLTKFQDVIAEPKGLPPS 3473
             L  +     I+E + V     T     F+D      P++ ILL  ++D+   P  LPPS
Sbjct: 228  HLKRLQNTDAIDECFTVQWLKSTEITDIFKDFPTNIEPEIAILLHTYKDLFNTPSALPPS 287

Query: 3472 RGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKK 3293
            R   H I + +G+ P    PYR  H+ K +IE ++++ML+  IIQ S SPF+SP++LVKK
Sbjct: 288  RSHNHTIPLIEGANPVKVKPYRYPHSQKEQIETMVQDMLQQGIIQPSTSPFSSPIVLVKK 347

Query: 3292 KDSTWRLCVDYRYLNGLTIKYDYPIPVIDEL----FGAKFFSKIDLRSGYFQILMKPEHR 3125
            KD TWR C DYR LN LTIK  +PIP +DEL    FGA++FSK+DLRSGY QIL+ P+ R
Sbjct: 348  KDGTWRFCTDYRALNALTIKDSFPIPTVDELLDELFGARYFSKLDLRSGYHQILLHPQDR 407

Query: 3124 FLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEE 2945
            + T F TH+GHYE+LVMPFGL NAPATFQSLMN IF+  LRK+VLVFFDDILIYS SW++
Sbjct: 408  YKTAFRTHHGHYEWLVMPFGLTNAPATFQSLMNHIFQHVLRKYVLVFFDDILIYSSSWQD 467

Query: 2944 HLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
            HL HL  V   L++N L+VK SKC+FG  EIEY+GH+++  GV++D  K+ +++ W TP
Sbjct: 468  HLTHLDAVLKVLQDNSLFVKLSKCSFGVSEIEYLGHMVTGQGVSMDRDKVQAVLNWSTP 526


>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1535

 Score =  617 bits (1591), Expect(2) = 0.0
 Identities = 322/690 (46%), Positives = 438/690 (63%), Gaps = 3/690 (0%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI++Y  ++ PLT LLKK+ + W  +AE AF  LK+A+ TAPVL
Sbjct: 801  VKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWNAQAEEAFKQLKNAITTAPVL 860

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LP+F  PF+LETDASG G+GAVL Q+G PIAY SK L P NQ  S   RE LA+  AI 
Sbjct: 861  ALPNFKLPFILETDASGVGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIA 920

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL GHKF+I+TDQ++L+ L++Q + TP QQ+W+ + LG D+ I+YK G EN   D 
Sbjct: 921  KFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADA 980

Query: 2222 LSR---RDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGG 2052
            LSR       E  C         +++++  +  ND+   +++            + +R G
Sbjct: 981  LSRIMTLSWSEPKCQ--------FIEQIRVALQNDNQMREILMKCNAGKAPV-QYSMRDG 1031

Query: 2051 IVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVK 1872
            ++ +K RL I  D  L   +L   H S  GGH+G+  T  R+K  FYWP MK D+I  V+
Sbjct: 1032 LLYWKQRLVIPKDNDLLYKVLFEFHTSPIGGHAGITRTMARIKSQFYWPDMKQDIIDYVQ 1091

Query: 1871 SCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYA 1692
             C  C+  K  N +  GLLQPL +P+Q W+ I MDFI GLP S+G   I+VVVDR TKYA
Sbjct: 1092 KCMVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSSGYTTIMVVVDRLTKYA 1151

Query: 1691 HFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSS 1512
            HF+ +   +++ +VA+ F+  I +LHG+P SIVSDRDK+FTS FW++LFKL G SL MSS
Sbjct: 1152 HFIPMKSDYTSKSVAESFMHNIVKLHGMPKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSS 1211

Query: 1511 AYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALY 1332
            AYHPQSDGQTE LN  LE +LRC    NPK W + LS AE+WYNT + TS+  T F+ALY
Sbjct: 1212 AYHPQSDGQTEVLNKALELFLRCFTFHNPKSWSKVLSWAEYWYNTAFQTSIGMTPFKALY 1271

Query: 1331 GYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEV 1152
            G  PP L+      +      + + +R + +Q L+ NL +A   +K  ADKHR + +F+V
Sbjct: 1272 GRDPPYLTKYEAQVTDPPALQEELMERDKILQQLKSNLDRAQQYMKKQADKHRKDVTFQV 1331

Query: 1151 GDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVP 972
            GD V +KLQP+RQ SV+LRK+ KL  RY+GP+ ++  IG VAY+L L + +KIHPVFHV 
Sbjct: 1332 GDLVLVKLQPYRQQSVALRKNQKLGMRYFGPFEIIACIGAVAYKLKLPDNAKIHPVFHVS 1391

Query: 971  LLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKA 792
             LK      +     LPL  +E    ++P+ VL  R + R    V Q+L+QW      +A
Sbjct: 1392 QLKPFKGAASDQYLPLPLTMTETGPIMQPIAVLQARTIMRGTQRVHQILVQWDTNAEAEA 1451

Query: 791  TWEDKKFIEKKFPSFNPWGQGLSPPRGIVM 702
            TWED   ++ KFP+ N   + +    GIVM
Sbjct: 1452 TWEDFDDLQLKFPTLNLEDKVVFNGEGIVM 1481



 Score =  332 bits (850), Expect(2) = 0.0
 Identities = 178/362 (49%), Positives = 231/362 (63%), Gaps = 17/362 (4%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            LL   G D+ILG  WL +  P   DY  +T    L   + K   LT  A    +  P+  
Sbjct: 444  LLPVAGADVILGASWLATLGPHVADYASLTLKFFL---KDKFVTLTGQA----VPRPTPA 496

Query: 3622 KLMH---MSCPTEIEEMYWV-----TVDGPSFED-----NPDMQILLTKFQDVIAEPKGL 3482
            +  H   ++    I E + V     T D   F+D      P++ +LL  +++V   P  L
Sbjct: 497  QFHHFKRLANTDSIAECFTVQCLKSTDDADIFKDLPTNTEPEIAMLLYTYKNVFKTPTAL 556

Query: 3481 PPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVIL 3302
            PP R   H I + +G+ P    PYR  H+ K +IE +I++ML   IIQNS SPF+SP++L
Sbjct: 557  PPDRFHNHTIPLIEGATPVKVKPYRYPHSQKEQIEAMIQDMLHQGIIQNSTSPFSSPIVL 616

Query: 3301 VKKKDSTWRLCVDYRYLNGLTIKYDYPIPVIDEL----FGAKFFSKIDLRSGYFQILMKP 3134
            VKKKD TWR C DYR LN +T+K  +PIP +DEL    FGAK+FSK+DLRSGY QIL++P
Sbjct: 617  VKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKYFSKLDLRSGYHQILLQP 676

Query: 3133 EHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKS 2954
            E R  T F TH GHYE+LVMPFGL NAPATFQSLMN IF+  LRK+VLVFFDDILIYS +
Sbjct: 677  EDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLVFFDDILIYSNT 736

Query: 2953 WEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWP 2774
            W++HL HL  V   L+ N LYVK SKCNFG LEIEY+GH+++  GV++D  K+ +++ WP
Sbjct: 737  WQDHLQHLDVVLRVLQENILYVKLSKCNFGVLEIEYLGHVVTGQGVSMDKDKVQAVLNWP 796

Query: 2773 TP 2768
            TP
Sbjct: 797  TP 798


>ref|XP_023919559.1| uncharacterized protein LOC112031110 [Quercus suber]
          Length = 1414

 Score =  607 bits (1564), Expect(2) = 0.0
 Identities = 302/677 (44%), Positives = 447/677 (66%), Gaps = 3/677 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K  + +RGFLGLTGYYRKFI++YG ++ PLT +LKK+ F WT +AE AF  LKDAM  AP
Sbjct: 739  KNPRAMRGFLGLTGYYRKFIQDYGKIAAPLTHMLKKNLFSWTPQAEVAFQRLKDAMTKAP 798

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LP+F+  F++E DASGTG+GAVL QE RPIA+ S+ L   N  LS  ++E LA++MA
Sbjct: 799  VLALPNFSHQFIVECDASGTGIGAVLRQE-RPIAFHSQALHGKNLLLSTYEKEMLALVMA 857

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            ++KW+HYL G KFL++TDQ++L+YL  Q+I T  QQ+W+ +L+G D+ I YK+G ENRV 
Sbjct: 858  VRKWRHYLLGRKFLVRTDQKSLQYLCSQQITTEAQQQWLHKLMGFDFSIMYKRGCENRVA 917

Query: 2228 DTLSRRDV--KEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRG 2055
            D LSRRD    E++  A++   P WL  V      ++    ++     D    P + +R 
Sbjct: 918  DALSRRDEVQPEEHLAAISAPIPHWLDAVREEQGKNTLVQAIVQRVHDDDAVGP-WELRD 976

Query: 2054 GIVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLV 1875
            G++ +K RL +  +  L+  I+   HN   G H G + T  R++  FYW KM+DD+   +
Sbjct: 977  GLLLFKDRLYLPPNSTLKQDIIQQFHN---GSHEGFHKTLRRIRANFYWSKMRDDIKAHI 1033

Query: 1874 KSCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKY 1695
            + C+ C+  K +  +  GLLQPL +P Q W+ I+MDFI+GLP S GK+ ++VVVDRF+KY
Sbjct: 1034 QMCEVCQQQKVEQLSPAGLLQPLPIPNQVWEDISMDFIDGLPVSQGKSTVMVVVDRFSKY 1093

Query: 1694 AHFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMS 1515
            +HF++++HP++A+++A++F D I++LHG+P +IV DRD  FTS FWKELF+L G S + S
Sbjct: 1094 SHFISIAHPYTATSIAQVFFDNIFKLHGMPRTIVCDRDPAFTSAFWKELFRLNGTSFNFS 1153

Query: 1514 SAYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQAL 1335
            SAYHPQ+DGQ+E +N  LE YLRC     PK W +WLS AEF YNT++H++++ T F+ +
Sbjct: 1154 SAYHPQTDGQSEVVNRTLEMYLRCFTSTKPKQWVKWLSWAEFCYNTSWHSTIRRTPFEVV 1213

Query: 1334 YGYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFE 1155
            YG  PP L       + +    + + +R   ++ L+ NL  A  R+K   D    EK++E
Sbjct: 1214 YGREPPSLLTYVLGTARVAAVEEELIRRDEVLKELKQNLKAAQERMKKNYDLRHREKAYE 1273

Query: 1154 VGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHV 975
            VG  V+++LQP++Q SV++R++ KL+ RYYGP+ +L++IG VAY+LDL   S+IHPVFHV
Sbjct: 1274 VGSWVYVRLQPYKQVSVAMRRNAKLAPRYYGPFQILQRIGTVAYKLDLPHESRIHPVFHV 1333

Query: 974  PLLKKRVSDGTQPSSDLPL-VDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVD 798
             LLK+++         LPL ++      + P  VLD R  + K+    ++L+ W  L   
Sbjct: 1334 SLLKEKLGAHVSTQVQLPLNIEGREGLLVRPQAVLDKRTRRNKK----EILVHWQGLSPT 1389

Query: 797  KATWEDKKFIEKKFPSF 747
            +ATWE+ + +  +FP +
Sbjct: 1390 EATWENLQSMRNQFPEY 1406



 Score =  342 bits (876), Expect(2) = 0.0
 Identities = 177/359 (49%), Positives = 237/359 (66%), Gaps = 13/359 (3%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            +L  EG D+++G  WL++   I  D+ K+T      G+ + ++ L+     +++ G  L 
Sbjct: 391  ILPLEGYDVVMGTHWLRTLGEILWDFAKLTMKFMSQGKEIILKGLSD----RWVEGHELE 446

Query: 3622 K---------LMHMSCPTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSR 3470
            K         ++H+  PT  + +          ++ P +  LL  F+++  E KGLPP R
Sbjct: 447  KHTGKQPKGAILHLVAPTLSDTL------AREEKEKPGLSQLLEAFKEIFKESKGLPPKR 500

Query: 3469 GVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKK 3290
              +H I ++ GS P    PYR  H  K+EIER++ EML A +I+ S SPF+SPV+LVKK 
Sbjct: 501  AQDHHIPLQTGSNPVCLKPYRYPHYQKSEIERLVTEMLTAGVIRPSNSPFSSPVVLVKKG 560

Query: 3289 DSTWRLCVDYRYLNGLTIKYDYPIPVIDELF----GAKFFSKIDLRSGYFQILMKPEHRF 3122
            D +WR+CVDYR LN +TIK  +PIP IDEL     GA FFSK+DLRSGY QI + P+   
Sbjct: 561  DGSWRMCVDYRSLNRITIKDKFPIPAIDELLDELNGAMFFSKLDLRSGYHQIRVSPDDVP 620

Query: 3121 LTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEH 2942
             T F TH+GHYEFLVMPFGL NAP+TFQ+LMN +F+  LRKFVLVFFDDIL+YS SW+EH
Sbjct: 621  KTAFRTHHGHYEFLVMPFGLTNAPSTFQALMNDVFKNQLRKFVLVFFDDILVYSVSWQEH 680

Query: 2941 LLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
            L HLQ V   L+++QLYVKR KC FGQ E+ Y+GHIIS  GV++D +KIS+MVQWP PK
Sbjct: 681  LQHLQIVLDILQSHQLYVKREKCQFGQQEVRYLGHIISQDGVSVDQEKISAMVQWPKPK 739


>gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 937

 Score =  624 bits (1610), Expect(2) = 0.0
 Identities = 325/680 (47%), Positives = 439/680 (64%), Gaps = 5/680 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K +KQLRGFLGLTGYYR+FI++Y  ++ PLT LLKK+ + W   AE AF  LK A+ TAP
Sbjct: 259  KNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYAWNDLAELAFQQLKSAVTTAP 318

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LP+F +PF+LETDASG G+GAVL QEG PIAY SK L P NQ  S   RE LA+  A
Sbjct: 319  VLALPNFHQPFILETDASGVGIGAVLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEA 378

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            I K++HYL GHKF+I+TDQ++L+ L++Q + TP QQ+W+ + LG D+ I+YK G EN   
Sbjct: 379  IAKFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAA 438

Query: 2228 DTLSRRDV---KEDNCNALTTITPTWLQEVINSYANDSFFAKVI--AANTLDPTTYPDFI 2064
            D LSR       E  C         ++++V  +  ND+   +++   A+   P  Y    
Sbjct: 439  DALSRLMTLAWSEPQCQ--------FIEQVKLALQNDNQMMEIMLKCASGKAPIQYT--- 487

Query: 2063 VRGGIVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVI 1884
            +R G++ +K RL I    +L   +L   H S  GGH+G+  T  R+K  FYWP MK D++
Sbjct: 488  MREGLLYWKQRLVIPKQNELLHKVLYEFHTSPIGGHAGITRTMARIKSQFYWPDMKKDIL 547

Query: 1883 QLVKSCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRF 1704
            + V++C  C+  K  N +  GLLQPL +P+Q W+ I MDFI GLP S G   I+VVVDR 
Sbjct: 548  EYVQNCVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRL 607

Query: 1703 TKYAHFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSL 1524
            TKYAHF+ +   +++ +VA+ F+  I +LHG+P SIVSDRDK+FTS FW++LFKL G SL
Sbjct: 608  TKYAHFIPMRTDYTSRSVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQQLFKLQGTSL 667

Query: 1523 DMSSAYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHF 1344
             MSSAYHPQSDGQTE LN  LE +LRC    NPK W++ LS AE+WYNT + TS+  T F
Sbjct: 668  AMSSAYHPQSDGQTEVLNKGLELFLRCFSFHNPKSWYKVLSWAEYWYNTAFQTSIGMTPF 727

Query: 1343 QALYGYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEK 1164
            +ALYG  PP L+      +      + + +R + +Q L+ NL +A   +K  ADKHRSE 
Sbjct: 728  KALYGRDPPYLTKYEAQVTDSPALQEELMERDKILQQLKINLERAQQYMKKQADKHRSEV 787

Query: 1163 SFEVGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPV 984
            + +VGD V +KLQP+RQ SVSLRK+ KL  RY+GP+ ++ ++G VAY+L L + +KIHPV
Sbjct: 788  NLQVGDLVLVKLQPYRQQSVSLRKNQKLGMRYFGPFEIIARVGNVAYKLKLPDNAKIHPV 847

Query: 983  FHVPLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLG 804
            FHV  LK            LPL  SE    I+P+  L+ R + R    V Q+L+QW  + 
Sbjct: 848  FHVSQLKPFKGIAQDQYLPLPLTMSETGPIIQPIAALEARTIMRGMQKVHQILVQWDQMP 907

Query: 803  VDKATWEDKKFIEKKFPSFN 744
            V +ATWED   ++ KFP+ N
Sbjct: 908  VTEATWEDLDVLQDKFPTLN 927



 Score =  314 bits (805), Expect(2) = 0.0
 Identities = 150/259 (57%), Positives = 192/259 (74%), Gaps = 4/259 (1%)
 Frame = -3

Query: 3529 ILLTKFQDVIAEPKGLPPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEA 3350
            +LL  ++D+   P  LPP+R   H I +  G+ P    PYR  H+ K +IE +I+EML+ 
Sbjct: 1    MLLHTYKDLFKAPVALPPNRSHNHSIPLIDGANPVKVKPYRYPHSQKAQIEHMIQEMLQQ 60

Query: 3349 WIIQNSKSPFASPVILVKKKDSTWRLCVDYRYLNGLTIKYDYPIPVIDEL----FGAKFF 3182
             IIQ S SPF+SP+ILVKKKD TWR C DYR LN +T+K  +PIP +DEL    FGAK+F
Sbjct: 61   GIIQTSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELFGAKYF 120

Query: 3181 SKIDLRSGYFQILMKPEHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLR 3002
            SK+DLRSGY QIL++PE R  T F TH GHYE+LVMPFGL NAPATFQSLMN IF+  LR
Sbjct: 121  SKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALR 180

Query: 3001 KFVLVFFDDILIYSKSWEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHY 2822
            K+VLVFFDDILIYS++W++HL HL  V   L+ N L+VK SKC+FG LEIEY+GH+++  
Sbjct: 181  KYVLVFFDDILIYSRTWQDHLKHLDAVLKILQENTLFVKLSKCSFGVLEIEYLGHMVTGQ 240

Query: 2821 GVAIDPQKISSMVQWPTPK 2765
            GV++D  K+ +++ WPTPK
Sbjct: 241  GVSMDKDKVQAVLNWPTPK 259


>dbj|GAU12466.1| hypothetical protein TSUD_229990, partial [Trifolium subterraneum]
          Length = 1303

 Score =  621 bits (1601), Expect(2) = 0.0
 Identities = 324/677 (47%), Positives = 432/677 (63%), Gaps = 2/677 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K +K +RGFLGLTGYYRKFI++YG ++K LT L KKD F W  EA+ AF  LK  + TAP
Sbjct: 580  KNVKGVRGFLGLTGYYRKFIKDYGKIAKALTELTKKDNFKWGREAQQAFEELKGKLTTAP 639

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LPDFTK  ++E+DASG G+GA+LMQ+ +PIAY SK L   N   S  ++E +AV++A
Sbjct: 640  VLALPDFTKQIIIESDASGGGIGAILMQDKKPIAYFSKALGKRNLTKSAYEKEMMAVVLA 699

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            IQ W+ YL G KF + TDQ++L+ L+ QRI+T  QQ W  +LLG D++I YK+G  N+  
Sbjct: 700  IQHWRPYLLGRKFTVYTDQKSLRQLMQQRIVTAEQQNWAAKLLGYDFDIIYKQGKLNKGA 759

Query: 2228 DTLSRRDVKEDNCNALTTITPTW--LQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRG 2055
            D LSR   +     A+T+    W   Q++I     D     +I A   DP   P +  R 
Sbjct: 760  DALSRM-YEGAEFQAITSYAQ-WDQKQQIIREVQQDEKLQVIIKALQQDPNAKPGYAYRQ 817

Query: 2054 GIVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLV 1875
            G++ Y GRL + +  +L  M+L   H ++ GGHSG   TY R+    YW  MK  + + V
Sbjct: 818  GVLLYNGRLVLSNHSQLIPMMLQEFHATSQGGHSGFYKTYRRIAANVYWSGMKGTIQEFV 877

Query: 1874 KSCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKY 1695
            +SCD C+  K    A  GLLQPL +P Q W  I+MDFI GLPKS G   ILVVVDR +KY
Sbjct: 878  RSCDICQRQKYMATAPGGLLQPLPIPEQVWDDISMDFITGLPKSRGYEAILVVVDRLSKY 937

Query: 1694 AHFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMS 1515
            +HF+ L HP++A ++A++F   I RLHG+ VSIVSDRD IF S FWKELF++ G  L MS
Sbjct: 938  SHFIPLKHPYTARSIAEVFCKEIVRLHGVLVSIVSDRDPIFVSGFWKELFRMQGTQLKMS 997

Query: 1514 SAYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQAL 1335
            SAYHP+SDGQTE +N CLE YLRC V + PK W  W+  AE+W+NTN+HT+   T F+ +
Sbjct: 998  SAYHPESDGQTEVVNRCLETYLRCFVADQPKTWALWVHWAEYWFNTNFHTATDKTPFEIV 1057

Query: 1334 YGYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFE 1155
            YG  PP L+     +  +      +  R  A++ LR  L+++  R+K  ADK R+E+SF 
Sbjct: 1058 YGRSPPKLTRWLQGEVRMEAVQRDLIDRDEALRQLRHQLLRSQERMKRQADKKRTERSFV 1117

Query: 1154 VGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHV 975
            +G+ VF+KL+  RQ S+  R + KL+ARYYGPY +LE+IG VAY+L L  GSK+HPVFHV
Sbjct: 1118 IGEWVFVKLRAHRQKSIVTRINAKLAARYYGPYPILERIGAVAYKLKLPPGSKVHPVFHV 1177

Query: 974  PLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDK 795
             LLKK V D  +      LV  E     EP  VL +R +K++   + QVLIQW     D+
Sbjct: 1178 SLLKKAVGDYNENEELPDLVSDEQPEAYEPEAVLGNRKIKQQGEEIKQVLIQWKGKNADE 1237

Query: 794  ATWEDKKFIEKKFPSFN 744
            ATWE     E +FP+FN
Sbjct: 1238 ATWE-----ESQFPTFN 1249



 Score =  311 bits (797), Expect(2) = 0.0
 Identities = 174/357 (48%), Positives = 226/357 (63%), Gaps = 11/357 (3%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFT-------VNLLGRRVKIQELTSLAECKF 3644
            L +  G D++LG +WLK+   + +++ K T +       V L G  +  QE +S+A    
Sbjct: 229  LFELGGIDIVLGMEWLKTLGDMIVNWRKQTMSFWSEKRWVTLQG--ISGQEKSSVALQSI 286

Query: 3643 ISGPSLYKLMHMSCPTEIEEMYWVTVDGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGV 3464
            +S P L     +    +I+E     + G + +   ++  +L +F+ V  EP GLPP R  
Sbjct: 287  LSKPKLTD-QEVLWGLDIQEKK--ELHGLTKQQQLELNKVLVQFEGVFKEPTGLPPRRDK 343

Query: 3463 EHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDS 3284
            EH I + +G    +  PYR  H  KNEIE+ ++EML A II+ S S F+SPVILVKKKD 
Sbjct: 344  EHAINLVEGHGTVNVRPYRYPHHHKNEIEKQVQEMLSAGIIRPSTSSFSSPVILVKKKDG 403

Query: 3283 TWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEHRFLT 3116
            +WR+C+DYR LN +TI   +PIPVI    DEL GAKFFSK+DL+SGY Q+ +K      T
Sbjct: 404  SWRMCIDYRALNKVTIPDKFPIPVIEELLDELNGAKFFSKLDLKSGYHQVRVKDSDIEKT 463

Query: 3115 TFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLL 2936
             F TH GHYEFLVMPFGL NAP+TFQSLMN +FR  LRK VLVFFDDILIYS+SW+EHL 
Sbjct: 464  AFRTHEGHYEFLVMPFGLMNAPSTFQSLMNNVFRSLLRKCVLVFFDDILIYSRSWKEHLE 523

Query: 2935 HLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
             L  V   L  + L   + KC F Q  IEY+GH+IS  GVA+DP KI S+VQWP PK
Sbjct: 524  QLASVLNMLELHSLVANKKKCQFAQGSIEYLGHVISEEGVAVDPNKIKSVVQWPVPK 580


>ref|XP_024188069.1| uncharacterized protein LOC112192533 [Rosa chinensis]
          Length = 1771

 Score =  613 bits (1582), Expect(2) = 0.0
 Identities = 320/679 (47%), Positives = 430/679 (63%), Gaps = 6/679 (0%)
 Frame = -2

Query: 2765 TLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPV 2586
            +LK LRGFLG+ GYYRK+++N+G+++K LT +LKKD F+WT EAETAF  LK A+ + PV
Sbjct: 1098 SLKGLRGFLGMAGYYRKYVKNFGIIAKALTNMLKKDNFVWTLEAETAFEELKAALCSTPV 1157

Query: 2585 LTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAI 2406
            L LPDFTK F +E DASG G+GAVL QEG PIAY+SK L P + ALS+  +E LAV+ A+
Sbjct: 1158 LALPDFTKKFDVECDASGLGIGAVLSQEGHPIAYLSKALAPKHLALSVYDKEMLAVVFAV 1217

Query: 2405 QKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVD 2226
            + W+ YL GH F I TD + ++Y L+QRI TP QQKW+ +LLG DY I YK GN N V D
Sbjct: 1218 EHWRPYLLGHPFRIITDHRTIQYFLNQRITTPAQQKWLLKLLGYDYTIVYKSGNTNIVPD 1277

Query: 2225 TLSRRDVKEDNCNALTTITPTWLQEV------INSYANDSFFAKVIAANTLDPTTYPDFI 2064
             LSR    +   N+L  ++    + +       +++       + I   T+   T  +F 
Sbjct: 1278 ALSR----QGELNSLMGVSSPVFEFINDISILCHTHVETQRLMEGIEQGTI---TSKNFT 1330

Query: 2063 VRGGIVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVI 1884
               G + YK R+ +      R  I+  +H    GGHSG   TY R+   F WP +K  V 
Sbjct: 1331 SSNGQLLYKKRIFVPDADDWRLKIIKELHCGKGGGHSGWLRTYKRISRSFLWPGIKKQVK 1390

Query: 1883 QLVKSCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRF 1704
              V  C  C+    +  + PGLLQP  +P   W  I+MDFI+GLP+S GK  ILVVVDR 
Sbjct: 1391 TFVSECLICQQVHYETISPPGLLQPNPIPAGLWTDISMDFIDGLPQSAGKTSILVVVDRL 1450

Query: 1703 TKYAHFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSL 1524
            TKYAHF+AL HP++A +VA+LF+  I+RLHG+P SI+SDRD IF S FWK  F+L G  L
Sbjct: 1451 TKYAHFIALKHPYTARSVAELFVQEIFRLHGMPESIISDRDPIFLSAFWKNFFELQGSKL 1510

Query: 1523 DMSSAYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHF 1344
             MS+AYHPQ+DGQTE LN  LE YLRC++ E   HW   L  AE+WYNT YH+++K + +
Sbjct: 1511 CMSTAYHPQTDGQTECLNRVLEQYLRCVILEEQGHWTDILPWAEWWYNTTYHSTIKMSPY 1570

Query: 1343 QALYGYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEK 1164
            QALYG PPP +       +++++   ++  R   +  L+ N+ QA  R+K Y DKH +E+
Sbjct: 1571 QALYGIPPPQVRKYVPGSTAVHQVDLVLRNRDELLSKLKCNMEQAQARMKVYYDKHHTER 1630

Query: 1163 SFEVGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPV 984
             F++GD VFLKLQP+RQ SV +RKS KLS +Y+GPY V+EKIG VAY+L+L   +++HPV
Sbjct: 1631 EFDIGDWVFLKLQPYRQKSVQVRKSHKLSPKYFGPYQVIEKIGKVAYKLELPASARVHPV 1690

Query: 983  FHVPLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLG 804
            FHV LLKK++     PS  LP           P +VL   + K+      + LIQW N  
Sbjct: 1691 FHVSLLKKKLGSSVVPSPTLPPSFDSNKSNWVPAKVLQRALFKKGNKPEVRWLIQWKNGS 1750

Query: 803  VDKATWEDKKFIEKKFPSF 747
             D ATWE  +  +K+FP F
Sbjct: 1751 EDDATWECAEEFQKRFPDF 1769



 Score =  318 bits (815), Expect(2) = 0.0
 Identities = 169/354 (47%), Positives = 227/354 (64%), Gaps = 6/354 (1%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            +L   GC+++LG  WL++   I  +Y+KMT   +L G+   +Q + + +E   +S  ++ 
Sbjct: 747  ILPVNGCEILLGATWLRTLGDIIWNYEKMTMRFSLCGKSHFLQGILA-SETSMVSSAAMT 805

Query: 3622 KLMHMSCPTEIEEMYWVTV--DGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGVEHQIL 3449
            KL+         E+  ++   D P  + +P++  L+  F  +   P GLPP R  +H+I 
Sbjct: 806  KLLKQEKEALCIELLAISAANDQPLKDVHPNIVSLIDNFATLFENPMGLPPPRLHDHRIE 865

Query: 3448 IKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDSTWRLC 3269
            +  G+ P    PYR     KNE+E+I  E+L    IQ S SPF+SPVILVKKKD + R+C
Sbjct: 866  LVPGAAPVSVRPYRFPQFQKNEVEKICTELLAGRQIQPSTSPFSSPVILVKKKDGSKRMC 925

Query: 3268 VDYRYLNGLTIKYDYPIPVIDELF----GAKFFSKIDLRSGYFQILMKPEHRFLTTFSTH 3101
            VDYR LN +T+K  +PIP++DEL     G+ +F+K+DLRSGY QI M       T F TH
Sbjct: 926  VDYRSLNAVTVKDKFPIPIVDELLDELHGSVYFTKLDLRSGYHQIRMHEADVHKTAFRTH 985

Query: 3100 NGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLHLQQV 2921
             GHYEFLVMPFGL NAP+TFQSLMN IF+++LRKFVLVFFDDILIYSKS EEHL HL  V
Sbjct: 986  QGHYEFLVMPFGLTNAPSTFQSLMNDIFKDHLRKFVLVFFDDILIYSKSLEEHLQHLAVV 1045

Query: 2920 FLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPKLL 2759
            F  L  +QL VK SKC FG   +EY+GH+IS  GVA+DP+KI ++  W  P  L
Sbjct: 1046 FSKLEEHQLKVKMSKCTFGAKSVEYLGHVISEKGVAVDPEKIEAIKNWKKPMSL 1099


>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
          Length = 1556

 Score =  598 bits (1543), Expect(2) = 0.0
 Identities = 323/682 (47%), Positives = 416/682 (60%), Gaps = 9/682 (1%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI+ Y  ++ PLT LLKK+ F W   A TAF  LK  + TAPVL
Sbjct: 817  VKQLRGFLGLTGYYRRFIKAYSQIAAPLTNLLKKEGFHWDDTATTAFYNLKLVISTAPVL 876

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LPDF+KPF+LETDAS TG+GA+L QEG PIA+ SK L P  Q  S   REF A+  A+ 
Sbjct: 877  ALPDFSKPFILETDASNTGIGAILSQEGHPIAFFSKKLGPTAQKQSAYVREFRAITEALA 936

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL GHKF+I+TDQ++LK LL+Q + TP QQ W+ + +G D+ I+YK G EN  VD 
Sbjct: 937  KFRHYLLGHKFIIRTDQKSLKALLEQTLQTPEQQAWLHKFIGFDFTIEYKPGKENLAVDA 996

Query: 2222 LSRRDVKEDNCNALTTITP--TWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            LSR        N L    P  ++L E+      D+   ++I     +     ++ V+  +
Sbjct: 997  LSR-------INLLAWSEPHYSFLDELRLEIQQDTHLKEIIQQCLNNSCADANYTVKDNL 1049

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            + ++ RL I  +  L   IL   H+S  GGHSG+  T  R+   FYW  M+  ++  +K 
Sbjct: 1050 LFWQQRLVIPENSTLIQKILLEFHSSPIGGHSGITRTMARIASQFYWTHMRQHIVAFIKH 1109

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            C  C+  K       GLL PL +PT  W  I MDFI GLP S G  VILVV+DR TKYAH
Sbjct: 1110 CVICQQAKTTTTTPAGLLAPLPIPTLVWADIAMDFITGLPPSNGFTVILVVIDRLTKYAH 1169

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F  L   F +  VA++F+  I +LHG+P SIVSDRDK+FTS FW+ LFKL G +L M+SA
Sbjct: 1170 FFPLKSDFDSKKVAEIFMQNIVKLHGMPSSIVSDRDKVFTSAFWRHLFKLHGTTLAMTSA 1229

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHPQSDGQ+E LN C+E YLRCM  +NP  W + L   EFWYNT+YHTS   T F+ALYG
Sbjct: 1230 YHPQSDGQSEVLNKCVEMYLRCMTFDNPTKWSKALPWTEFWYNTSYHTSAAMTPFKALYG 1289

Query: 1328 YPPPLL-------SIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRS 1170
              PP L          P L + + E  DL+SQ       L+ NL +A   +K  ADK R 
Sbjct: 1290 SDPPQLVRTKGTTDDHPDLQTQLAEREDLLSQ-------LQVNLHKAQQAMKFQADKKRH 1342

Query: 1169 EKSFEVGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIH 990
               F+V DQV +KLQP+RQ+SV+LRK  KL  RY+GP+ ++ K+G VAYRL L   +KIH
Sbjct: 1343 HVEFKVDDQVLVKLQPYRQSSVALRKHQKLGLRYFGPFPIVAKVGVVAYRLGLPSTTKIH 1402

Query: 989  PVFHVPLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWAN 810
            PVFHV  LK        P   LPL  SE    ++P  +LD R++ R    + QVLI W  
Sbjct: 1403 PVFHVSQLKLFHGPHIPPYMPLPLTTSELGPILQPEALLDSRLIMRGNTPISQVLISWEG 1462

Query: 809  LGVDKATWEDKKFIEKKFPSFN 744
            L    ATWED    +   P+FN
Sbjct: 1463 LETADATWEDLVEFKLAHPNFN 1484



 Score =  324 bits (830), Expect(2) = 0.0
 Identities = 168/359 (46%), Positives = 226/359 (62%), Gaps = 14/359 (3%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLY 3623
            LL   G D+ILG  WL +  P   +Y  ++    + G+ V +  +         +   L+
Sbjct: 458  LLPFSGADLILGSSWLATLGPHIANYADLSLRFVVDGKFVTLNGMPDSLPTP--APAQLH 515

Query: 3622 KLMHMSCPTEIEEMYW-----VTVDGPSFED-----NPDMQILLTKFQDVIAEPKGLPPS 3473
             +  M     I E+Y      V+ D PS E      +PD+Q LL ++ D+   P  LPP 
Sbjct: 516  HIRRMQRTHAISEVYMMQLFHVSSDAPSVEQITSTLSPDLQELLHRYSDIFQTPTSLPPP 575

Query: 3472 RGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKK 3293
            R  +H I +   S      PYR  H+ K +IE+++KEML+  IIQ S SPF+SP+ILVKK
Sbjct: 576  RAQDHSIPLMDESTVIKVRPYRYPHSQKEQIEKMVKEMLQQGIIQPSTSPFSSPIILVKK 635

Query: 3292 KDSTWRLCVDYRYLNGLTIKYDYPIP----VIDELFGAKFFSKIDLRSGYFQILMKPEHR 3125
            KD TWR C DYR LN +T+K  +P+P    ++DEL+GA++FSK+DLRSGY QILM P  R
Sbjct: 636  KDGTWRCCTDYRALNTVTVKDSFPLPSVDELLDELYGARYFSKLDLRSGYHQILMNPNDR 695

Query: 3124 FLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEE 2945
              T F TH GHYE+LVMPFGL NAPA+FQ LMN++F+  LRKFVLVFFDDIL+YS  W  
Sbjct: 696  HKTAFRTHQGHYEWLVMPFGLSNAPASFQCLMNEVFQFALRKFVLVFFDDILVYSPDWSA 755

Query: 2944 HLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
            HL HL++V LTL+   LYVK SKC+FG L+++Y+GH +S  GVA+D +K+  +  WP P
Sbjct: 756  HLDHLERVLLTLKQQVLYVKLSKCSFGMLQVDYLGHTVSGMGVAMDKEKVRVIADWPLP 814


>gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1139

 Score =  597 bits (1539), Expect(2) = 0.0
 Identities = 319/674 (47%), Positives = 417/674 (61%), Gaps = 1/674 (0%)
 Frame = -2

Query: 2762 LKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPVL 2583
            +KQLRGFLGLTGYYR+FI+NY +++ PLT LLKKD+F W+ EA  AF  L+ A+  APVL
Sbjct: 361  IKQLRGFLGLTGYYRRFIKNYALIALPLTALLKKDQFQWSSEATDAFHKLQQAITQAPVL 420

Query: 2582 TLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAIQ 2403
             LP+F + FVLETDASG+GVGAVL Q   PIA+ SK L P  Q  S   RE  A+  A+ 
Sbjct: 421  ALPNFKEDFVLETDASGSGVGAVLSQNHHPIAFFSKKLNPRMQRQSAYVRELYAITEAMA 480

Query: 2402 KWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVDT 2223
            K++HYL GH+F+I+TDQ++LK L+DQ I TP QQ W+ + LG D+ I+YK G +N   D 
Sbjct: 481  KFRHYLLGHRFIIRTDQKSLKSLMDQTIQTPEQQNWLHKFLGFDFTIEYKPGRDNIAADA 540

Query: 2222 LSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIVR 2043
            LSR  +      A ++     L ++  +   D   A + A         P + V+  ++ 
Sbjct: 541  LSRSFMM-----AFSSQQSLLLHQIRLAIQQDHELAAIKALCIEGKAPDPFYTVQHDMLF 595

Query: 2042 YKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSCD 1863
            +K RL +   P + + IL   H S  GGHSGV  T  R+   F+WP M  D+ + V  C 
Sbjct: 596  WKNRLVVPKSPHIVNQILLEYHASPVGGHSGVQRTKARICQQFFWPHMSKDITKFVTECL 655

Query: 1862 TCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHFM 1683
            TC+  K       GLLQPL +P Q W+ I MDFI GLP S G  VI VVVDR +KY HF 
Sbjct: 656  TCQQAKSSTALPAGLLQPLPIPLQIWEDIAMDFITGLPPSNGFTVIFVVVDRLSKYGHFT 715

Query: 1682 ALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAYH 1503
             L   F A  VA  F + I +LHG+P SIVSDRDK+FTS FW++LF+L G +L MS+AYH
Sbjct: 716  PLKSDFDAPKVAAAFFNNIVKLHGIPKSIVSDRDKVFTSQFWQQLFRLSGTTLAMSTAYH 775

Query: 1502 PQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYGY- 1326
            PQ+DGQ+E LN CLE YLRC    NPK W R L  AE+WYNT +  S+  T F+A+YG  
Sbjct: 776  PQTDGQSEALNKCLEMYLRCFTGTNPKSWARLLPWAEYWYNTAFQNSIAMTPFKAVYGRD 835

Query: 1325 PPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVGD 1146
            PP L+   P  +   N   +L+ +R   +Q L+ NL+ A   +K +ADK R    F+VGD
Sbjct: 836  PPSLIRYVPQSNDPPN-LQELLIERDVVLQQLKSNLLTAQGFMKKFADKKRRILEFQVGD 894

Query: 1145 QVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPLL 966
             V +KLQP+RQ+SV LRK+ KL  RY+GP+ VL K+G VAYRL L  G+KIHPVFHV LL
Sbjct: 895  SVLVKLQPYRQHSVVLRKNQKLGLRYFGPFTVLAKVGPVAYRLQLPPGTKIHPVFHVSLL 954

Query: 965  KKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKATW 786
            K    +       LPL+       + PL+VL  R+V     ++ Q LIQW  L   +ATW
Sbjct: 955  KPCKGEHDNTYLPLPLLQHAHGPLLTPLRVLQTRMVPSNGQLIAQALIQWDGLTEAEATW 1014

Query: 785  EDKKFIEKKFPSFN 744
            ED   ++K +PS N
Sbjct: 1015 EDCLTLKKNYPSLN 1028



 Score =  325 bits (832), Expect(2) = 0.0
 Identities = 173/362 (47%), Positives = 229/362 (63%), Gaps = 17/362 (4%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSL- 3626
            LL   G D++LG  WL +  P   DY+ ++    +    V +          F   PSL 
Sbjct: 7    LLPISGADLVLGAAWLATLGPHIADYNALSIKFYIDNHFVTL----------FGDKPSLP 56

Query: 3625 -----YKLMHMSCPTEIEEMYWVTVDGPSFEDN-------PDMQILLTKFQDVIAEPKGL 3482
                 + L  +     IE++Y + +   S + +       P M+ LL +F +V A P GL
Sbjct: 57   RPAQFHHLRRLHQTDAIEQVYSLQLHDDSLDVSLSSQSLHPQMKELLLQFPEVFATPSGL 116

Query: 3481 PPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVIL 3302
            PPSR  +H I + +GS P    PYR  H+ K +IE +++EMLE  IIQ S SPF+SPV+L
Sbjct: 117  PPSRSHDHAIPLLEGSNPVKVKPYRYPHSQKTQIELMVQEMLEQGIIQPSTSPFSSPVLL 176

Query: 3301 VKKKDSTWRLCVDYRYLNGLTIKYDYPIPVIDEL----FGAKFFSKIDLRSGYFQILMKP 3134
            VKKKD TWR C DYR LN +T+K  +PIP +DEL    +GA  FSK+DLRSGY QIL+ P
Sbjct: 177  VKKKDGTWRFCTDYRALNTITVKDSFPIPTVDELLDELYGASHFSKLDLRSGYHQILVAP 236

Query: 3133 EHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKS 2954
            + R+ T F TH G YE+LVMPFGL NAPATFQSLMNQ+F+  LRK VLVFFDDIL+YS S
Sbjct: 237  QDRYKTAFRTHQGLYEWLVMPFGLTNAPATFQSLMNQVFQHLLRKCVLVFFDDILVYSPS 296

Query: 2953 WEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWP 2774
            W EHLLHL +V   LR++ LY K SKC+FG  +I+Y+GHI+S  GV +D  K+ ++++WP
Sbjct: 297  WNEHLLHLHEVLQLLRDHCLYAKVSKCSFGVTKIDYLGHIVSGNGVEMDDSKVKAVMEWP 356

Query: 2773 TP 2768
             P
Sbjct: 357  LP 358


>gb|PNY00121.1| hypothetical protein L195_g023397 [Trifolium pratense]
          Length = 1118

 Score =  619 bits (1597), Expect(2) = 0.0
 Identities = 314/676 (46%), Positives = 441/676 (65%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K +K +RGFLGLTGYYRKFIR+YG ++KPLT L KKD F+W  +A +AF TLK  + TAP
Sbjct: 397  KNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKDAFVWNEKALSAFETLKKCLTTAP 456

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LP+F K F++E DASG G+GA+LMQ+ RPIAY SK L   N   S+ ++E +AV+++
Sbjct: 457  VLALPNFDKEFLIECDASGGGIGAILMQDRRPIAYFSKALGVRNLTKSVYEKELMAVVLS 516

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            IQ W+ YL G KF++ TDQ++LK LL QR++T  QQ W  +LLG D++I YK G  N   
Sbjct: 517  IQHWRPYLIGRKFVVSTDQKSLKQLLQQRMVTADQQNWAAKLLGYDFDIIYKPGRLNSGA 576

Query: 2228 DTLSRRDVKEDNCNALTTITPTWLQEVI--NSYANDSFFAKVIAANTLDPTTYPDFIVRG 2055
            D LSR  V E   N + T +  W  E I  +    D    +VI     D  + P ++ + 
Sbjct: 577  DALSR--VNEGELNQVIT-SFHWKDEAILRSEVHKDPHLLQVIEDLQKDTNSKPGYVYKN 633

Query: 2054 GIVRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLV 1875
            G++ Y+GRL I +   +   +L+  H +  GGHSG   TY R+    YW  MK+ V + V
Sbjct: 634  GVLLYEGRLVISAKSSMIPTLLSEFHTTPQGGHSGFYKTYRRIAANVYWVGMKNTVQEFV 693

Query: 1874 KSCDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKY 1695
            K+CD C+  K    +  GLLQPL +P + W+ ++MDFI GLPKS G   ILVVVDR +KY
Sbjct: 694  KACDICQRQKYLTSSPGGLLQPLPIPDRIWEDLSMDFITGLPKSKGYEAILVVVDRLSKY 753

Query: 1694 AHFMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMS 1515
             HF+ L HP++A  +A++F+  + RLHG+P+SIVSDRD +F S+FW+ELFKL G  L MS
Sbjct: 754  VHFIPLKHPYTAKIIAEVFVREVVRLHGIPLSIVSDRDSVFMSSFWRELFKLQGTKLRMS 813

Query: 1514 SAYHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQAL 1335
            +AYHP++DGQTE +N CLE YLRC + + P+ W  W+S +E+W+NT++H++   T ++ +
Sbjct: 814  TAYHPETDGQTEVVNRCLETYLRCFITDQPRTWANWISWSEYWFNTSHHSATGQTPYETV 873

Query: 1334 YGYPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFE 1155
            YG  PP+++     ++ +      +  R  A++ LR  L +A +R+K  ADK R ++SFE
Sbjct: 874  YGRAPPVITRWVQGETRVEAVQRELLDRDEALRQLRQQLQRAQDRMKQLADKKRCDRSFE 933

Query: 1154 VGDQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHV 975
            +G+ VF+KL+  RQ SV  R + KL+ARYYGPY V+ ++G VAY+L L EGSK+HPVFHV
Sbjct: 934  IGEWVFVKLRAHRQQSVVCRINAKLAARYYGPYPVIARVGAVAYQLKLPEGSKVHPVFHV 993

Query: 974  PLLKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDK 795
             LLKK V +      +LP +  E    IEP  VL +R V  +   V QVLI W    V++
Sbjct: 994  SLLKKAVGN-YHEGEELPELQGEQGVLIEPEAVLANRFVWMQNEKVDQVLIHWKGQKVEE 1052

Query: 794  ATWEDKKFIEKKFPSF 747
            ATWED   ++ +FP+F
Sbjct: 1053 ATWEDVLMMKSQFPNF 1068



 Score =  302 bits (773), Expect(2) = 0.0
 Identities = 162/356 (45%), Positives = 231/356 (64%), Gaps = 15/356 (4%)
 Frame = -3

Query: 3787 GC-DMILGGDWLKSCTPIELDYDKMTFT-------VNLLGRRVKIQELTSLAE--CKFIS 3638
            GC D++LG +WL++   + +++ K T +       V + G   ++  + +L    CK   
Sbjct: 49   GCVDVVLGIEWLRTLGDMIVNWKKHTMSFWFNKEWVTMKGVESQLGMMETLQSVLCK--- 105

Query: 3637 GPSLYKLMHMSCPTEIEEMYWVTV-DGPSFEDNPDMQILLTKFQDVIAEPKGLPPSRGVE 3461
             P L + +      E+E+     V        + +++ LL    DV  +PKGLPP R  E
Sbjct: 106  -PKLKRGIGWK---EVEDKVSCGVLHSLEVNQSKELEHLLNMCADVFQDPKGLPPKRKKE 161

Query: 3460 HQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDST 3281
            H I +K+G+   +  PYR  H  K+EIE+ ++EML++ II+ S S F+SPVILVKKKD++
Sbjct: 162  HVITLKEGATAVNVRPYRYPHHHKDEIEKQVREMLQSGIIRPSTSSFSSPVILVKKKDNS 221

Query: 3280 WRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEHRFLTT 3113
            WR+CVDYR LN  T+   +PIPVI    DEL GA +FSK+DL+SGY Q+ ++      T 
Sbjct: 222  WRMCVDYRVLNKATVPDKFPIPVIEELLDELHGACYFSKLDLKSGYHQVRVREADIHKTA 281

Query: 3112 FSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLH 2933
            F TH GHYEFLVMPFGL NAP+TFQSLMN++F+  LRK VLVFFDDIL+YSK+W EH+ +
Sbjct: 282  FRTHEGHYEFLVMPFGLMNAPSTFQSLMNEVFKPLLRKSVLVFFDDILVYSKTWSEHMRN 341

Query: 2932 LQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
            L++V   L++++L   R KC+FGQ  +EY+GH+I+  GVA+DP KI S++ WP PK
Sbjct: 342  LEEVLQILQSHELVANRKKCHFGQRSVEYLGHLITSQGVAVDPSKIVSVINWPIPK 397


>dbj|GAU42077.1| hypothetical protein TSUD_326550 [Trifolium subterraneum]
          Length = 1545

 Score =  621 bits (1601), Expect(2) = 0.0
 Identities = 319/674 (47%), Positives = 433/674 (64%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            + +K +RGFLGLTGYYRKFI++Y  + +PLT L KKD F+W   A+ AF +LK ++ TAP
Sbjct: 851  RNVKGVRGFLGLTGYYRKFIKDYDKIVRPLTELTKKDGFVWNENAQRAFDSLKKSLTTAP 910

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VLTLPDF K FV+E DASG G+GA+LMQ+ +P+AY SK L   N   S  ++E + V++A
Sbjct: 911  VLTLPDFNKDFVIECDASGEGIGAILMQDKKPVAYFSKALGVRNLTKSAYEKELMVVVLA 970

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            IQ W+ YL G KFL+ TDQ++LK LL QR++T  QQ W  +LLG D+EI YK GN NR  
Sbjct: 971  IQHWRPYLLGRKFLVSTDQKSLKQLLQQRMVTAEQQNWAAKLLGYDFEIIYKPGNLNRGA 1030

Query: 2228 DTLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            D LSR       CN +T++  +  + V     +D    ++I     D    P F  + G+
Sbjct: 1031 DALSRVGEGAGLCNLITSVKWSDEEVVRTEVKHDEQLQQIIHDLQQDINARPGFTYKQGV 1090

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            + Y+GRL + +   L   +L   H + +GGHSG   TY R+    YW  MK+ + + VKS
Sbjct: 1091 LLYEGRLVLSAKSTLIPQLLVEFHATPHGGHSGFYRTYRRIAANVYWVGMKNTIQEFVKS 1150

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            CDTC+  K    +  GLLQPL +P + W+ I+MDFI GLPKS G   ILVVVDR +KYAH
Sbjct: 1151 CDTCQRQKYLTSSPGGLLQPLPIPDRIWEDISMDFITGLPKSRGYEAILVVVDRLSKYAH 1210

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+ L HP++A ++A++F   I RLHG+P+SIVS+RD IF SNFWKELFKL G  L MS+A
Sbjct: 1211 FIPLKHPYTARSIAEVFAKEIVRLHGIPLSIVSNRDPIFMSNFWKELFKLQGTKLRMSTA 1270

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHP++DGQTE +N CLE YLRC + + PK W+ W+  +E+W+NT+YH +   T ++ +YG
Sbjct: 1271 YHPETDGQTEVVNRCLETYLRCFITDQPKTWYNWIFWSEYWFNTSYHAATGQTPYEIVYG 1330

Query: 1328 YPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
              PP+++                          R  L +A +R+K  ADK R ++SFEVG
Sbjct: 1331 RVPPVIT--------------------------RWQLHRAQDRMKQIADKKRCDRSFEVG 1364

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            + VF+KL+  RQ SV  R + KL+ARY+GPY VLE++G VAYRL L  GS++HPVFHV L
Sbjct: 1365 EWVFVKLRAHRQQSVVCRINAKLAARYFGPYPVLERVGAVAYRLKLPPGSRVHPVFHVSL 1424

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LKK V +      +LP ++ E    IEP +VL  R VK +  MV QVLIQW    +++AT
Sbjct: 1425 LKKAVGN-YYDEHELPELEGEQGTVIEPEKVLARRTVKVQDEMVTQVLIQWKGQKIEEAT 1483

Query: 788  WEDKKFIEKKFPSF 747
            WED   I  +FP+F
Sbjct: 1484 WEDAIMIGSQFPNF 1497



 Score =  300 bits (768), Expect(2) = 0.0
 Identities = 157/356 (44%), Positives = 221/356 (62%), Gaps = 15/356 (4%)
 Frame = -3

Query: 3787 GC-DMILGGDWLKSCTPIELDYDKMTFTVNLLGRRVKIQELTSLAECKFISGPSLYKLMH 3611
            GC D++LG +WL +   + +++ K +      G  V ++ + +           +  L  
Sbjct: 503  GCVDVVLGIEWLSTLGDMIVNWKKHSMNFWFKGEWVTMRGMETQLNM-------METLQS 555

Query: 3610 MSCPTEIEEMYWVTVDGPSFEDNP----------DMQILLTKFQDVIAEPKGLPPSRGVE 3461
            + C +    M     +    ED            +++ LL+   DV  +P GLPP R  E
Sbjct: 556  VLCKSRKRRMAGWQREEEKVEDGVLSTLEVGQTRELEHLLSLCADVFQDPTGLPPKREKE 615

Query: 3460 HQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDST 3281
            H I +++G+   +  PYR  +  KNEIER ++EML   II+ S S F+SPVILVKKKD++
Sbjct: 616  HVITLREGASAVNVRPYRYPYHHKNEIERQVQEMLSNGIIRPSTSAFSSPVILVKKKDNS 675

Query: 3280 WRLCVDYRYLNGLTIKYDYPIPVI----DELFGAKFFSKIDLRSGYFQILMKPEHRFLTT 3113
            WR+C+DYR LN  T+   +PI VI    DEL GAK+FSK+DL+SGY Q+ ++      T 
Sbjct: 676  WRMCIDYRALNKATVPEKFPILVIEELLDELHGAKYFSKLDLKSGYHQVRVRESDIHKTA 735

Query: 3112 FSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLH 2933
            F TH GHYEF+VMPFGL NAP+TFQSLMN++F+ YLRKFVLVFFDDIL+YSKSW EHL H
Sbjct: 736  FRTHEGHYEFMVMPFGLMNAPSTFQSLMNEVFKPYLRKFVLVFFDDILVYSKSWTEHLEH 795

Query: 2932 LQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTPK 2765
            L+ V   L+ ++L   + KC FGQ  +EY+GH+I++ GVA+DP K+ S+  WP P+
Sbjct: 796  LEMVLRILQKHELVANKKKCQFGQTYVEYLGHLITNLGVAVDPSKVISVTNWPVPR 851


>gb|PNY17486.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1357

 Score =  618 bits (1594), Expect(2) = 0.0
 Identities = 319/675 (47%), Positives = 432/675 (64%)
 Frame = -2

Query: 2768 KTLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAP 2589
            K +K +RGFLGLTGYYRKFIR+YG ++KPLT L KKD F W  EA+ AF  LK+ + TAP
Sbjct: 633  KNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKDGFKWGAEAQHAFDELKNKLTTAP 692

Query: 2588 VLTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMA 2409
            VL LPDFTK FV+E DASG G+GA+L+QE RPIAY SK L   N   S  ++E +AV++A
Sbjct: 693  VLALPDFTKRFVIECDASGGGIGAILIQEKRPIAYFSKALGMRNLTKSAYEKELMAVVLA 752

Query: 2408 IQKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVV 2229
            IQ W+ YL G +F + TDQ++LK L+ QRI+T  QQ W  +LLG D+EI YK+G  N+  
Sbjct: 753  IQHWRPYLLGRRFTVSTDQKSLKQLMQQRIVTAEQQNWAAKLLGYDFEIVYKQGRLNKGA 812

Query: 2228 DTLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGI 2049
            D LSR     +  N  +       Q+V      D    ++I     D    P +  + G+
Sbjct: 813  DALSRIHEGTELNNITSFALWDQEQQVRVEIEQDERLQEIIKQLQQDHDAKPGYEYKQGV 872

Query: 2048 VRYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKS 1869
            + Y+GRL I S   L   +L   H +  GGHSG   TY R+    YW  MK  V + VKS
Sbjct: 873  LLYEGRLVISSKSLLIPTLLKEFHTTPQGGHSGFYKTYRRIAANVYWLGMKATVQEFVKS 932

Query: 1868 CDTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAH 1689
            CDTC+  K    +  GLLQPL VP Q W+ I+MDFI GLPKS G   ILVVVDR +KY+H
Sbjct: 933  CDTCQRQKYLATSPGGLLQPLPVPDQIWEDISMDFITGLPKSKGFEAILVVVDRLSKYSH 992

Query: 1688 FMALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSA 1509
            F+ L HP++A ++A++F   + RLHG+P++IVSDRD IF S+FW+ELF++ G  L MSSA
Sbjct: 993  FIPLKHPYTARSIAEVFCKEVVRLHGVPLTIVSDRDPIFMSSFWRELFRMQGTQLKMSSA 1052

Query: 1508 YHPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYG 1329
            YHP+SDGQTE +N CLE YLRC + + PK W  W+  AE+W+NTNYH+S   T F+ +YG
Sbjct: 1053 YHPESDGQTEVVNRCLETYLRCFIVDQPKTWVSWVHWAEYWFNTNYHSSTGKTPFEIVYG 1112

Query: 1328 YPPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVG 1149
              PP L      ++ +      +  R  A++ L+  L++A  ++K  ADK R E+SF +G
Sbjct: 1113 RSPPKLIRWVQGETRVEAVQRDLVDRDEALRQLKSQLLRAQEKMKNQADKKRVERSFAIG 1172

Query: 1148 DQVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPL 969
            + VF+KL+  RQ SV  R + KL+ARY+GPY ++E+IG VAY+L L EGS+IHPVFHV L
Sbjct: 1173 EWVFVKLRAHRQKSVVTRINAKLAARYFGPYPIVERIGAVAYKLKLPEGSRIHPVFHVSL 1232

Query: 968  LKKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKAT 789
            LKK V D  +      L+  +     EP+ VL  R ++++   + QVL+QW     ++AT
Sbjct: 1233 LKKAVGDYHEEDELPDLMGDDTGENYEPVAVLATRKIRQQGEEIKQVLVQWEGKDAEEAT 1292

Query: 788  WEDKKFIEKKFPSFN 744
            WE+   ++ +FP FN
Sbjct: 1293 WEEAIMMKSQFPKFN 1307



 Score =  299 bits (766), Expect(2) = 0.0
 Identities = 172/381 (45%), Positives = 222/381 (58%), Gaps = 35/381 (9%)
 Frame = -3

Query: 3802 LLQNEGCDMILGGDWLKSC--TPIELDYDKMTFTVN-----LLGRRVKIQELTSL----- 3659
            L +  G D++LG +WLK+   T I      M+F VN     L G+      L +L     
Sbjct: 253  LFELGGIDVVLGIEWLKTLGNTVINWKQQVMSFWVNDKWVTLKGKGGCNNSLVALQTFLR 312

Query: 3658 ---------------AECKFISGPSLYKLMHMSCPTEIEE----MYWVTVDGPSFEDNPD 3536
                            E K I      +  H    T + E       V     S   + +
Sbjct: 313  KPRSKKEEVRWEIEGVEPKDICENVRSENQHQERRTVLSEYGNIFQTVCESALSESQHRE 372

Query: 3535 MQILLTKFQDVIAEPKGLPPSRGVEHQILIKQGSEPKHQFPYRTSHA*KNEIERIIKEML 3356
            ++ +L ++ DV   P  LPP R  EH I + +G       PYR  H  KNEIE+ +KE+L
Sbjct: 373  LEEVLREYADVFQTPTSLPPKRNKEHAINLVEGHNAVSVRPYRYPHHHKNEIEKQVKELL 432

Query: 3355 EAWIIQNSKSPFASPVILVKKKDSTWRLCVDYRYLNGLTIKYDYPIPVI----DELFGAK 3188
             + +I++S S F+SPVILVKKKD+TWR+C+DYR LN +T+   +PIPVI    DEL GAK
Sbjct: 433  ASGVIRHSTSSFSSPVILVKKKDNTWRMCIDYRALNKVTVPDKFPIPVIEELLDELHGAK 492

Query: 3187 FFSKIDLRSGYFQILMKPEHRFLTTFSTHNGHYEFLVMPFGLCNAPATFQSLMNQIFREY 3008
            FFSK+DL+SGY Q+ +K      T F TH GHYEFLVMPFGL NAP+TFQ+LMN IFR  
Sbjct: 493  FFSKLDLKSGYHQVRVKESDIHKTAFRTHEGHYEFLVMPFGLMNAPSTFQNLMNDIFRPV 552

Query: 3007 LRKFVLVFFDDILIYSKSWEEHLLHLQQVFLTLRNNQLYVKRSKCNFGQLEIEYIGHIIS 2828
            LRK VLVFFDDILIYSK WE HL HL++V   L  + L     KC FGQ  +EY+GH+I+
Sbjct: 553  LRKHVLVFFDDILIYSKDWESHLKHLKEVLSLLSCHSLVANEKKCYFGQRTVEYLGHLIT 612

Query: 2827 HYGVAIDPQKISSMVQWPTPK 2765
              GVA+DP K+ S++QWPTPK
Sbjct: 613  CDGVAVDPNKVKSVMQWPTPK 633


>gb|ABF94845.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 937

 Score =  655 bits (1689), Expect(2) = 0.0
 Identities = 333/688 (48%), Positives = 447/688 (64%)
 Frame = -2

Query: 2765 TLKQLRGFLGLTGYYRKFIRNYGVLSKPLTLLLKKDKFLWTHEAETAFLTLKDAMVTAPV 2586
            ++ +LRGFLGLTGYYRKF++ Y ++++PLTLLLKK  FLWT  A+ AF  LK AM   P+
Sbjct: 241  SVTELRGFLGLTGYYRKFVQGYSIIARPLTLLLKKKAFLWTDAAQLAFDQLKTAMSNTPM 300

Query: 2585 LTLPDFTKPFVLETDASGTGVGAVLMQEGRPIAYMSKNLCPMNQALSI*KREFLAVLMAI 2406
            L LP+F  PF LETDA   G+GAVL Q+G PIAY SK L P+NQ LSI ++EFLA++MA+
Sbjct: 301  LALPNFQLPFTLETDACAYGLGAVLSQQGHPIAYYSKTLGPVNQKLSIYEKEFLAIMMAV 360

Query: 2405 QKWKHYLHGHKFLIKTDQQALKYLLDQRIMTPMQQKWITQLLGLDYEIQYKKGNENRVVD 2226
             KW+ YL    F+IKT  + L +L DQ + T +QQK +T+L+GL Y  QYK+G  N V D
Sbjct: 361  DKWRCYLQRGPFIIKTYHKILCHLDDQILGTELQQKAMTKLMGLQYSFQYKRGVNNIVAD 420

Query: 2225 TLSRRDVKEDNCNALTTITPTWLQEVINSYANDSFFAKVIAANTLDPTTYPDFIVRGGIV 2046
             LSR       C A + + P W+QE+INSY  D    +++A   +       + +  GI+
Sbjct: 421  ALSRMPSSSQFC-AFSVVQPIWIQEMINSYTVDPQAQQLLAELAVHSPNSQGYSLTQGII 479

Query: 2045 RYKGRLGIGSDPKLRSMILAAMHNSAYGGHSGVNGTYMRLKGVFYWPKMKDDVIQLVKSC 1866
            R++ ++ IGS+  L + ++ A H SA GGHSG+  TY R+K +F WP +K DV   VK C
Sbjct: 480  RFQNKIWIGSNAGLHTKLIQAFHASALGGHSGIAATYHRIKKLFAWPGLKLDVENFVKQC 539

Query: 1865 DTCKLNKPDNDAYPGLLQPLHVPTQAWKHITMDFIEGLPKSTGKNVILVVVDRFTKYAHF 1686
              C+  K ++   PGLL PL +P +AW+ I+MDFIEGLP+S G N ILVVVDRFTKYA+F
Sbjct: 540  QVCQQAKHEHCRLPGLLAPLPIPKEAWQDISMDFIEGLPRSDGYNAILVVVDRFTKYANF 599

Query: 1685 MALSHPFSASNVAKLFLDTIYRLHGLPVSIVSDRDKIFTSNFWKELFKLMGVSLDMSSAY 1506
            + L HPF+AS VA L   T+++ HG+P SIVSDRD++FTS FW  LF      L MS+AY
Sbjct: 600  IPLRHPFTASQVAHLVDKTVFKTHGIPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAY 659

Query: 1505 HPQSDGQTERLN*CLENYLRCMVHENPKHWFRWLSLAEFWYNTNYHTSLKTTHFQALYGY 1326
            HPQ+DGQ ER+N CLE YLRCM   NPK W  W+ LAEFWYNTNYHT L  +  +AL+G 
Sbjct: 660  HPQTDGQIERVNQCLEMYLRCMTQANPKKWSHWIHLAEFWYNTNYHTYLGCSPHKALFGV 719

Query: 1325 PPPLLSIGPYLDSSINEAHDLVSQRQRAVQVLRDNLIQAHNRLKTYADKHRSEKSFEVGD 1146
             P    +     +++ +  D+ ++RQ   + L+  L +A  R+K   DK RS++ F VGD
Sbjct: 720  DPHYSQVPDLTLATLPDVVDVQTERQHLSEFLQQQLTRAQLRMKNKVDKGRSDRVFAVGD 779

Query: 1145 QVFLKLQPFRQNSVSLRKSLKLSARYYGPYIVLEKIGGVAYRLDLLEGSKIHPVFHVPLL 966
             VFLKLQP+ Q+SV  R   KL+ +++GP+ VLE+IG  AYRLDL   S +HPVFHV  L
Sbjct: 780  AVFLKLQPYAQSSVVNRPYPKLAYKFFGPFTVLERIGVAAYRLDLPASSTVHPVFHVSQL 839

Query: 965  KKRVSDGTQPSSDLPLVDSEGNFKIEPLQVLDHRIVKRKQNMVPQVLIQWANLGVDKATW 786
            K +V D T   + LP         + P  +L+ R+VKR      QVL++W++L  D ATW
Sbjct: 840  KAQVPDHTPVYTSLPSQVVLDAADVVPEAILERRLVKRSNAAHVQVLLKWSSLPADHATW 899

Query: 785  EDKKFIEKKFPSFNPWGQGLSPPRGIVM 702
            ED   ++ +FP    WGQ  +P  G VM
Sbjct: 900  EDYHVVKTRFPDAPAWGQAETPAGGTVM 927



 Score =  262 bits (670), Expect(2) = 0.0
 Identities = 125/220 (56%), Positives = 162/220 (73%), Gaps = 4/220 (1%)
 Frame = -3

Query: 3415 PYRTSHA*KNEIERIIKEMLEAWIIQNSKSPFASPVILVKKKDSTWRLCVDYRYLNGLTI 3236
            PYR S   K+EIE+ +KEM++A +I  S SP+ASPV+LVKKKD +WR CVDYR LN LTI
Sbjct: 20   PYRYSPLQKDEIEKQVKEMIDAGLITPSMSPYASPVLLVKKKDGSWRFCVDYRRLNALTI 79

Query: 3235 KYDYPIPVIDELF----GAKFFSKIDLRSGYFQILMKPEHRFLTTFSTHNGHYEFLVMPF 3068
            K  +P+PV+DEL     G KFFSK+DL++GY QI M       T F TH+G ++F VMPF
Sbjct: 80   KSKFPMPVVDELLDELSGTKFFSKLDLKAGYHQIRMVETDEAKTAFKTHHGQFQFRVMPF 139

Query: 3067 GLCNAPATFQSLMNQIFREYLRKFVLVFFDDILIYSKSWEEHLLHLQQVFLTLRNNQLYV 2888
            GL NAP+TFQ LMN +   ++RKFVLVF DDIL+YS   + HL HLQQVF+ LR +QL+ 
Sbjct: 140  GLTNAPSTFQCLMNSVLAPFIRKFVLVFMDDILVYSPDLDSHLHHLQQVFVILRQHQLFA 199

Query: 2887 KRSKCNFGQLEIEYIGHIISHYGVAIDPQKISSMVQWPTP 2768
            +RSKC+F   ++EY+GHIIS  GV+ DP+K ++M+ WP P
Sbjct: 200  RRSKCSFACTQLEYLGHIISDKGVSTDPEKTAAMLAWPVP 239