BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00037605
         (492 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PPZ26810.1| hypothetical protein C5P36_26435, partial [Escher...   246   4e-80
gb|PNX70392.1| retrotransposon protein putative Ty1-copia subcla...   239   3e-78
gb|PKI73953.1| hypothetical protein CRG98_005646 [Punica granatum]    239   2e-76
gb|PNX87842.1| retrotransposon protein putative Ty1-copia subcla...   244   8e-76
gb|PKI44202.1| hypothetical protein CRG98_035407 [Punica granatum]    239   3e-75
gb|KYP76577.1| Retrovirus-related Pol polyprotein from transposo...   235   3e-74
gb|PKI72506.1| hypothetical protein CRG98_007109 [Punica granatum]    245   7e-74
gb|PPZ05609.1| hypothetical protein C5P41_24865, partial [Escher...   246   7e-74
gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposo...   238   6e-72
gb|PPY93112.1| hypothetical protein C5P31_25365, partial [Escher...   240   8e-72
gb|PKI65249.1| hypothetical protein CRG98_014398 [Punica granatum]    237   2e-71
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   240   5e-71
gb|OMO61163.1| Zinc finger, CCHC-type [Corchorus capsularis]          227   4e-69
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     234   9e-69
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   234   9e-69
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap...   228   1e-68
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni...   226   1e-68
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   228   1e-68
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc...   226   2e-68
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e...   226   3e-68

>gb|PPZ26810.1| hypothetical protein C5P36_26435, partial [Escherichia coli]
          Length = 242

 Score =  246 bits (628), Expect = 4e-80
 Identities = 117/161 (72%), Positives = 142/161 (88%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKL+RSIYGLKQASRSWNIRFDE IK F F KN DEPCVYK+VS SA+ F+VLYVDDI
Sbjct: 24  KVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDSAITFLVLYVDDI 83

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
           LL+GND GML + + WLS  FSMKDLGEA++ILGI+IYRDR++++IGLSQS+ ++K+LKR
Sbjct: 84  LLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKR 143

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           F+M +SKRG LP+ HG+ LSK MSPKTPEER++M+RIPYAS
Sbjct: 144 FNMLDSKRGLLPVRHGIHLSKEMSPKTPEERDKMARIPYAS 184


>gb|PNX70392.1| retrotransposon protein putative Ty1-copia subclass, partial
           [Trifolium pratense]
          Length = 182

 Score =  239 bits (610), Expect = 3e-78
 Identities = 112/162 (69%), Positives = 139/162 (85%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +K+CKLQRSIYGLKQASRSWN+RFDET+K F F KN DEPCVYK+VSGS   F+VLYV D
Sbjct: 16  KKICKLQRSIYGLKQASRSWNLRFDETVKQFGFIKNEDEPCVYKKVSGSIFMFLVLYVGD 75

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGND+  LQ  +TWL+  FSMKDLG+A++ILGI+IYRDRS+K++GLSQS  IDK+L+
Sbjct: 76  ILLIGNDIPTLQQVKTWLANCFSMKDLGKAAYILGIRIYRDRSQKLLGLSQSTYIDKVLR 135

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M +SK+G++PM HG+ LSK  SP + EER+RMS+IPYAS
Sbjct: 136 RFNMNDSKKGFIPMQHGLCLSKTQSPSSKEERDRMSKIPYAS 177


>gb|PKI73953.1| hypothetical protein CRG98_005646 [Punica granatum]
          Length = 291

 Score =  239 bits (609), Expect = 2e-76
 Identities = 111/158 (70%), Positives = 138/158 (87%)
 Frame = +3

Query: 3   EQKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVD 182
           + KVCKL+RSIYGLKQ SRSWN RFDE +K F F KN DEPCVYK+ SGS +AF+VLYVD
Sbjct: 120 KSKVCKLKRSIYGLKQVSRSWNRRFDEAVKSFGFIKNEDEPCVYKKASGSMIAFLVLYVD 179

Query: 183 DILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKML 362
           DILLIGND+GML S + WLS  FSMKDLGEA++ILGI+IYRDR +++IGLSQ++ +DK+L
Sbjct: 180 DILLIGNDIGMLTSVKVWLSNTFSMKDLGEANYILGIRIYRDRPKRLIGLSQALYLDKVL 239

Query: 363 KRFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSR 476
           KRF+M++S+RG LP+ HG+ LSKAMSPKTPEERE+M++
Sbjct: 240 KRFNMQDSRRGLLPVRHGIHLSKAMSPKTPEEREKMAQ 277


>gb|PNX87842.1| retrotransposon protein putative Ty1-copia subclass, partial
           [Trifolium pratense]
          Length = 511

 Score =  244 bits (622), Expect = 8e-76
 Identities = 117/161 (72%), Positives = 143/161 (88%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKLQRSIYGLKQASRSWNIRF+ TI+ F+F K  +EPCVYK++SGS++ F+VLYVDDI
Sbjct: 234 KVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDI 293

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
           LL GND+  +QST+ WLS+QFSMKDLGEA++ILGIKIYRDRS++++GLSQSM ID +LKR
Sbjct: 294 LLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKR 353

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           ++ME+SKRGYLP+  GVSLS+   PKT EERERMSR+PYAS
Sbjct: 354 YNMEKSKRGYLPVGMGVSLSRENCPKTLEERERMSRVPYAS 394


>gb|PKI44202.1| hypothetical protein CRG98_035407 [Punica granatum]
          Length = 405

 Score =  239 bits (610), Expect = 3e-75
 Identities = 112/163 (68%), Positives = 139/163 (85%)
 Frame = +3

Query: 3   EQKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVD 182
           + KVCKL+RSIYGL Q SRSWN RFDE +K F F K  DEPCVYK+ SGS +AF+VLYVD
Sbjct: 214 KSKVCKLKRSIYGLTQVSRSWNRRFDEAVKSFGFIKYEDEPCVYKKASGSMIAFLVLYVD 273

Query: 183 DILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKML 362
           DILL+GNDVGML S   WLS  FSMKDLGEA++IL I+IYRDR +++IGLSQ++ +DK+L
Sbjct: 274 DILLMGNDVGMLTSVNVWLSNTFSMKDLGEATYILSIRIYRDRPKRLIGLSQALYLDKVL 333

Query: 363 KRFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           KRF+M++S+RG LP+ HG+ LSKAMSPKTPEERE+M+++PYAS
Sbjct: 334 KRFNMQDSRRGLLPVRHGIHLSKAMSPKTPEEREKMAQVPYAS 376


>gb|KYP76577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 368

 Score =  235 bits (600), Expect = 3e-74
 Identities = 113/161 (70%), Positives = 139/161 (86%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKL+RSIYGLK+ASRSWNI+F++TIK FDF +  +EPCVYK VSGS + F++LYVDDI
Sbjct: 32  KVCKLERSIYGLKKASRSWNIQFNKTIKKFDFVRCEEEPCVYKRVSGSTIIFLMLYVDDI 91

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
           LLIGND+  LQST+ WLS+QFSMKDLGEA++ILGIKIYRDRS++M+GLSQSM ID +L+R
Sbjct: 92  LLIGNDIPFLQSTKIWLSEQFSMKDLGEAAYILGIKIYRDRSKRMLGLSQSMYIDTILRR 151

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           ++ME SKRGY P+  GV+LS    PKT EER RM+R+PYAS
Sbjct: 152 YNMENSKRGYFPIGTGVTLSNEDCPKTLEERTRMNRVPYAS 192


>gb|PKI72506.1| hypothetical protein CRG98_007109 [Punica granatum]
          Length = 783

 Score =  245 bits (625), Expect = 7e-74
 Identities = 119/162 (73%), Positives = 141/162 (87%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +KVCKLQRSIYGLKQASRSWN+RFD+ IK F F KN DEPCVYK+VSGS V F+VLYVDD
Sbjct: 412 RKVCKLQRSIYGLKQASRSWNLRFDDAIKEFGFIKNEDEPCVYKKVSGSVVIFLVLYVDD 471

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGND+  LQS +TWL + FSMKDLGEA+++LGIKIYRDRS +++GLSQS  IDK+L 
Sbjct: 472 ILLIGNDILSLQSVKTWLGRCFSMKDLGEATYVLGIKIYRDRSNRLLGLSQSAYIDKVLW 531

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RFSM++SK+G LPM HG+SLSKA SP T EER+R++RIPYAS
Sbjct: 532 RFSMQDSKKGSLPMLHGISLSKAQSPSTREERDRINRIPYAS 573


>gb|PPZ05609.1| hypothetical protein C5P41_24865, partial [Escherichia coli]
          Length = 859

 Score =  246 bits (628), Expect = 7e-74
 Identities = 117/161 (72%), Positives = 142/161 (88%)
 Frame = +3

Query: 9    KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
            KVCKL+RSIYGLKQASRSWNIRFDE IK F F KN DEPCVYK+VS SA+ F+VLYVDDI
Sbjct: 537  KVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDSAITFLVLYVDDI 596

Query: 189  LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
            LL+GND GML + + WLS  FSMKDLGEA++ILGI+IYRDR++++IGLSQS+ ++K+LKR
Sbjct: 597  LLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKR 656

Query: 369  FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
            F+M +SKRG LP+ HG+ LSK MSPKTPEER++M+RIPYAS
Sbjct: 657  FNMLDSKRGLLPVRHGIHLSKEMSPKTPEERDKMARIPYAS 697


>gb|KYP68472.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 676

 Score =  238 bits (606), Expect = 6e-72
 Identities = 115/161 (71%), Positives = 141/161 (87%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKL+RSIYGLKQASRSWNI+F++TIK FDF +  +EPCVYK VSGS + F++LYVDDI
Sbjct: 482 KVCKLERSIYGLKQASRSWNIQFNKTIKNFDFVRCEEEPCVYKRVSGSTIIFLMLYVDDI 541

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
           LLIGND+  LQST+ WLS+QFSMKDLGEA++ILGIKIYRDRS++M+GLSQSM I+ +LKR
Sbjct: 542 LLIGNDIPSLQSTKIWLSEQFSMKDLGEAAYILGIKIYRDRSKRMLGLSQSMYINTILKR 601

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           ++ME SKRGYLP+  GV+LS+   PKT EER RM+R+PYAS
Sbjct: 602 YNMENSKRGYLPIGTGVTLSREDCPKTLEERTRMNRVPYAS 642


>gb|PPY93112.1| hypothetical protein C5P31_25365, partial [Escherichia coli]
          Length = 813

 Score =  240 bits (612), Expect = 8e-72
 Identities = 115/161 (71%), Positives = 140/161 (86%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKL+RSIYGLKQA RSWNIRFDE IK F F KN DEPCVYK+VS SA+ F+VLYVDDI
Sbjct: 446 KVCKLKRSIYGLKQALRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDSAITFLVLYVDDI 505

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
           LL+GND GML + + WLS  FSMKDLGEA++ILGI+IYRDR++++IGLSQS+ ++K+LKR
Sbjct: 506 LLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKR 565

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           F+M +SKRG L + HG+ LSK MSPKTPEER++M+RIPYAS
Sbjct: 566 FNMLDSKRGLLLVRHGIHLSKEMSPKTPEERDKMARIPYAS 606


>gb|PKI65249.1| hypothetical protein CRG98_014398 [Punica granatum]
          Length = 727

 Score =  237 bits (605), Expect = 2e-71
 Identities = 110/163 (67%), Positives = 140/163 (85%)
 Frame = +3

Query: 3    EQKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVD 182
            + KVCKL+RSIYGLKQ SRSWN RFDE +K F F KN  EPCVYK+ SGS + F+VLY+D
Sbjct: 529  KSKVCKLKRSIYGLKQVSRSWNRRFDEAVKSFGFIKNEVEPCVYKKASGSMIVFLVLYMD 588

Query: 183  DILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKML 362
            DILLIGND+G+L S + WLS  FSMKDLGEA++ILGI+IYRD+ +++IGLSQ++ +DK+L
Sbjct: 589  DILLIGNDIGVLTSIKVWLSDIFSMKDLGEATYILGIRIYRDKPKRLIGLSQALYMDKVL 648

Query: 363  KRFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
            KRF+M++SKRG LP+ HG+  SKAMSPKTPEERE+M+++PYAS
Sbjct: 649  KRFNMQDSKRGLLPVRHGIHFSKAMSPKTPEEREKMAQVPYAS 691


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana]
 emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  240 bits (612), Expect = 5e-71
 Identities = 113/162 (69%), Positives = 139/162 (85%)
 Frame = +3

Query: 6    QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
            +KVCKL RSIYGLKQASRSWN+RF+E IK FDF +N +EPCVYK+ SGSAVAF+VLYVDD
Sbjct: 582  RKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDD 641

Query: 186  ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
            ILL+GND+ +LQS +TWL   FSMKD+GEA++ILGI+IYRDR  K+IGLSQ   IDK+L 
Sbjct: 642  ILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLH 701

Query: 366  RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
            RF+M +SK+G++PMSHG++LSK   P T +ERERMS+IPYAS
Sbjct: 702  RFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYAS 743


>gb|OMO61163.1| Zinc finger, CCHC-type [Corchorus capsularis]
          Length = 525

 Score =  227 bits (578), Expect = 4e-69
 Identities = 107/161 (66%), Positives = 136/161 (84%)
 Frame = +3

Query: 9   KVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDI 188
           KVCKLQRSI GLKQASRSWN+ F++ +K F F KN DEPCVYK+VSGS + F+VLYV DI
Sbjct: 346 KVCKLQRSINGLKQASRSWNLCFNDAVKEFSFIKNKDEPCVYKKVSGSTIVFLVLYVYDI 405

Query: 189 LLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKR 368
            LIGND+  L+S +TWL K F MKDLGEA+++LG+KIYRDRSR+++GLSQS  IDK+LKR
Sbjct: 406 RLIGNDIPTLKSVKTWLGKCFFMKDLGEANYVLGVKIYRDRSRRLLGLSQSTYIDKVLKR 465

Query: 369 FSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           FSM++SK+G+ PM+HG++LSK   P T +ERER+++IPYAS
Sbjct: 466 FSMQDSKKGFTPMTHGITLSKEQCPVTQKERERITQIPYAS 506


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  234 bits (598), Expect = 9e-69
 Identities = 110/160 (68%), Positives = 138/160 (86%)
 Frame = +3

Query: 12   VCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDIL 191
            +CKLQ+SIYGLKQASRSWNIRFDE +K   F KN +EPCVYK++SGSA+ F++LYVDDIL
Sbjct: 857  ICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDIL 916

Query: 192  LIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKRF 371
            LIGND+ ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDKMLKRF
Sbjct: 917  LIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRF 976

Query: 372  SMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
            +M++SK+G+LPMSHG++L K   P+T +ER +MS IPYAS
Sbjct: 977  NMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYAS 1016


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  234 bits (598), Expect = 9e-69
 Identities = 110/160 (68%), Positives = 138/160 (86%)
 Frame = +3

Query: 12   VCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDDIL 191
            +CKLQ+SIYGLKQASRSWNIRFDE +K   F KN +EPCVYK++SGSA+ F++LYVDDIL
Sbjct: 867  ICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDIL 926

Query: 192  LIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLKRF 371
            LIGND+ ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDKMLKRF
Sbjct: 927  LIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRF 986

Query: 372  SMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
            +M++SK+G+LPMSHG++L K   P+T +ER +MS IPYAS
Sbjct: 987  NMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYAS 1026


>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
          Length = 637

 Score =  228 bits (582), Expect = 1e-68
 Identities = 106/162 (65%), Positives = 138/162 (85%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +++CKLQ+SIYGLKQASRSW I FDE +K+  F KN +EPCVYK++SGS + F++LYVDD
Sbjct: 300 KRICKLQKSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKKISGSTLVFLILYVDD 359

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGND+ ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDK+LK
Sbjct: 360 ILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 419

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M++SK+G+LPMSHG++L K   P+T +ER +MS IPYAS
Sbjct: 420 RFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYAS 461


>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
 gb|AAS01915.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 547

 Score =  226 bits (576), Expect = 1e-68
 Identities = 107/162 (66%), Positives = 137/162 (84%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +K+CKLQ+SIYGLKQASRSWNI FDE +K   F KN +EPCVYK++SGSA+ F++LYVDD
Sbjct: 225 KKICKLQKSIYGLKQASRSWNIHFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDD 284

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGN + ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDK+LK
Sbjct: 285 ILLIGNVIPMLESIKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 344

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M++SK+G+LPMSHG++L K   P+T +ER +MS I YAS
Sbjct: 345 RFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVILYAS 386


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 649

 Score =  228 bits (582), Expect = 1e-68
 Identities = 106/162 (65%), Positives = 138/162 (85%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +++CKLQ+SIYGLKQASRSW I FDE +K+  F KN +EPCVYK++SGS + F++LYVDD
Sbjct: 312 KRICKLQKSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKKISGSTLVFLILYVDD 371

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGND+ ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDK+LK
Sbjct: 372 ILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 431

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M++SK+G+LPMSHG++L K   P+T +ER +MS IPYAS
Sbjct: 432 RFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYAS 473


>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 562

 Score =  226 bits (576), Expect = 2e-68
 Identities = 107/162 (66%), Positives = 137/162 (84%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +K+CKLQ+SIYGLKQASRSWNI FDE +K   F KN +EPCVYK++SGSA+ F++LYVDD
Sbjct: 240 KKICKLQKSIYGLKQASRSWNIHFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDD 299

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILLIGN + ML+S +T L   FSMKDLGEA++ILGI+IYRDRS+++IGLSQS  IDK+LK
Sbjct: 300 ILLIGNVIPMLESIKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 359

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M++SK+G+LPMSHG++L K   P+T +ER +MS I YAS
Sbjct: 360 RFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVILYAS 401


>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 566

 Score =  226 bits (575), Expect = 3e-68
 Identities = 107/162 (66%), Positives = 138/162 (85%)
 Frame = +3

Query: 6   QKVCKLQRSIYGLKQASRSWNIRFDETIKMFDFHKNPDEPCVYKEVSGSAVAFVVLYVDD 185
           +KVCKL +SIYGLKQASRSWNIRFDE +K FDF KN +EPCVYK+VSGS + F++LYVDD
Sbjct: 396 RKVCKLNKSIYGLKQASRSWNIRFDEVVKGFDFIKNEEEPCVYKKVSGSKLVFLILYVDD 455

Query: 186 ILLIGNDVGMLQSTRTWLSKQFSMKDLGEASFILGIKIYRDRSRKMIGLSQSM*IDKMLK 365
           ILL+ ND+ ML+S +T L   FS+KDLG+AS+ILGI+IYRDRS+++IGLSQ M IDK+LK
Sbjct: 456 ILLVENDIPMLESVKTSLRNSFSIKDLGDASYILGIRIYRDRSKRLIGLSQDMYIDKVLK 515

Query: 366 RFSMEESKRGYLPMSHGVSLSKAMSPKTPEERERMSRIPYAS 491
           RF+M++SK G+L M+HG++LSK+    T +ER++MSRI YAS
Sbjct: 516 RFNMQDSKNGFLLMAHGINLSKSQCSSTIDERDKMSRITYAS 557