BLASTX nr result
ID: Rehmannia29_contig00037336
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00037336
(584 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_021668479.1| uncharacterized protein LOC110656165 [Hevea ... 69 2e-10
ref|XP_019197208.1| PREDICTED: uncharacterized protein LOC109191... 69 4e-10
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 65 4e-09
gb|KZV44983.1| hypothetical protein F511_32729 [Dorcoceras hygro... 65 6e-09
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] >gi... 63 7e-09
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc... 64 7e-09
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 60 1e-08
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 63 1e-08
emb|CAN69551.1| hypothetical protein VITISV_009015 [Vitis vinifera] 63 2e-08
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 63 2e-08
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc... 64 2e-08
ref|XP_021603893.1| uncharacterized protein LOC110608920 [Maniho... 64 3e-08
ref|XP_012080571.1| uncharacterized protein LOC105640788 [Jatrop... 63 4e-08
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 63 5e-08
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 63 5e-08
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 62 5e-08
gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygro... 62 6e-08
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 62 7e-08
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 62 7e-08
dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifo... 62 9e-08
>ref|XP_021668479.1| uncharacterized protein LOC110656165 [Hevea brasiliensis]
Length = 327
Score = 69.3 bits (168), Expect = 2e-10
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Frame = -1
Query: 227 ILEELFCDRDVRQISNIPLSNFDEEDIRV*HFDNKGRYLVRSGYRLAVDCSINGSDGNS- 51
+L +F RDV IS++P+S FD+ED + HFD +G+YLV+S Y +A D G +G +
Sbjct: 18 LLRGIFQGRDVEVISSMPISIFDKEDTWIWHFDKRGKYLVKSAYHVARDMR-GGVEGRNP 76
Query: 50 ---WVRRNLWNLEIPPKVK 3
W R LWNL IPPK+K
Sbjct: 77 HDHW--RKLWNLAIPPKIK 93
>ref|XP_019197208.1| PREDICTED: uncharacterized protein LOC109191092 [Ipomoea nil]
Length = 1295
Score = 68.9 bits (167), Expect = 4e-10
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = -1
Query: 227 ILEELFCDRDVRQISNIPLSNFDEEDIRV*HFDNKGRYLVRSGYRLAVDCSINGSDGNSW 48
+L ++FC+RDV QI ++P+ D+ D+KG Y V SGYRLAV +NG +G W
Sbjct: 916 VLRDIFCERDVNQILSVPIPYGMRRDVLFWSGDDKGVYSVGSGYRLAVGGEVNG-EGVVW 974
Query: 47 VRRNLWNLEIPPKVK 3
R +WNL +PPKVK
Sbjct: 975 --RGMWNLRVPPKVK 987
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF97857.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1021
Score = 65.1 bits (157), Expect(2) = 4e-09
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
+TH +SC Y Q+N AERK IVEVG SLLA + +PL+F +AF YLIN TPSK
Sbjct: 515 ITHHVSCPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYLINRTPSKV 574
Query: 470 L 472
+
Sbjct: 575 I 575
Score = 23.5 bits (49), Expect(2) = 4e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 529 SVIAFGCQCYPQLR 570
S+ FGC C+P LR
Sbjct: 593 SLRTFGCACWPNLR 606
>gb|KZV44983.1| hypothetical protein F511_32729 [Dorcoceras hygrometricum]
Length = 372
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLT 475
HR++C + S++N + ERK +VE+G +LLA + +PLRF PDAF YLIN P ++
Sbjct: 261 HRVTCPHTSEQNGVVERKHRHVVEIGLTLLAHASMPLRFWPDAFSTAVYLINRLPFSAIS 320
Query: 476 CMHIPF*IAHSRKPD 520
+IPF + + + PD
Sbjct: 321 -GNIPFKLLYKKCPD 334
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gb|AAU44069.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1447
Score = 63.2 bits (152), Expect(2) = 7e-09
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
+TH +SC + Q+N AERK IVEVG +LLA S +PL+F +AF YLIN TP+K
Sbjct: 600 ITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKL 659
Query: 470 LTCMHIPF*IAHSRKPD*TSL 532
L + P ++ PD +SL
Sbjct: 660 LQFL-TPLEHLFNQTPDYSSL 679
Score = 24.6 bits (52), Expect(2) = 7e-09
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 529 SVIAFGCQCYPQLRSLGT 582
S+ FGC C+P LR T
Sbjct: 678 SLRVFGCACWPHLRPYNT 695
>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1001
Score = 64.3 bits (155), Expect(2) = 7e-09
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
++HR+SC + Q+N AERK IVEVG +LLA + +PL+F +AF YLIN TP+KT
Sbjct: 339 ISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLKFWDEAFCTATYLINRTPAKT 398
Query: 470 LTCMHIPF*IAHSRKPD*TSL 532
+ P +KP+ SL
Sbjct: 399 IN-FDTPLERLFHQKPEYASL 418
Score = 23.5 bits (49), Expect(2) = 7e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 529 SVIAFGCQCYPQLR 570
S+ FGC C+P LR
Sbjct: 417 SLRTFGCACWPNLR 430
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 60.5 bits (145), Expect(2) = 1e-08
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLT 475
H +SC + Q+N AERK I+EVG SLL+ + +PL+F +AF YLIN PSKT+
Sbjct: 602 HHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQ 661
Query: 476 CMHIPF*IAHSRKPD*TSL 532
P ++KPD SL
Sbjct: 662 -NSTPLEKLFNQKPDYLSL 679
Score = 26.2 bits (56), Expect(2) = 1e-08
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 526 LSVIAFGCQCYPQLRSLGT 582
LS+ FGC C+P LR T
Sbjct: 677 LSLRVFGCACWPHLRPYNT 695
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 63.2 bits (152), Expect(2) = 1e-08
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
++H +SC + Q+N AERK IVEVG SLLA + +PL+F +AF YLIN TPSK
Sbjct: 591 ISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRTPSKV 650
Query: 470 LTCMHIPF*IAHSRKPD*TSL 532
+ P +KP TSL
Sbjct: 651 IQ-YETPLEHLFHQKPSYTSL 670
Score = 23.5 bits (49), Expect(2) = 1e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 529 SVIAFGCQCYPQLR 570
S+ FGC C+P LR
Sbjct: 669 SLRVFGCACWPNLR 682
>emb|CAN69551.1| hypothetical protein VITISV_009015 [Vitis vinifera]
Length = 784
Score = 63.2 bits (152), Expect(2) = 2e-08
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTL 472
HR+SC Y SQ+N LAERK IVE+G LLAQS+LP +F DAF ++IN P+K L
Sbjct: 301 HRLSCPYTSQQNGLAERKHRHIVEMGLILLAQSELPKKFWVDAFLTSIFIINRLPTKVL 359
Score = 23.5 bits (49), Expect(2) = 2e-08
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 538 AFGCQCYPQLR 570
+FGCQC+P +R
Sbjct: 380 SFGCQCFPCVR 390
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 63.2 bits (152), Expect(2) = 2e-08
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTL 472
H++SC + Q+N AERK IVEVG +LLAQS +PL++ AF YLIN TPSKT+
Sbjct: 602 HQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTI 660
Score = 23.1 bits (48), Expect(2) = 2e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 529 SVIAFGCQCYPQLR 570
S+ FGC C+P LR
Sbjct: 678 SLRIFGCACWPNLR 691
>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
[Trifolium pratense]
Length = 835
Score = 63.5 bits (153), Expect(2) = 2e-08
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Frame = +2
Query: 311 RISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLTC 478
R+SC Y SQ+N AERK I E G +LLAQ+K+PL + +AF YLIN PS ++T
Sbjct: 588 RMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPS-SVTH 646
Query: 479 MHIPF*IAHSRKPD*TSL 532
P+ + H R+PD SL
Sbjct: 647 NKSPYSLLHKREPDYNSL 664
Score = 22.7 bits (47), Expect(2) = 2e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 529 SVIAFGCQCYPQLR 570
S+ FGC CYP L+
Sbjct: 663 SLKPFGCACYPFLK 676
>ref|XP_021603893.1| uncharacterized protein LOC110608920 [Manihot esculenta]
Length = 653
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = -1
Query: 227 ILEELFCDRDVRQISNIPLSNFDEEDIRV*HFDNKGRYLVRSGYRLAVDCSINGS---DG 57
+L ELF RD+R I +IP+S +ED + HFD +G Y V+S Y + +D S G
Sbjct: 398 LLMELFSSRDIRAIISIPISITSKEDSFLWHFDKRGVYTVKSAYFVCIDLLGRSSFNVGG 457
Query: 56 NSWVRRNLWNLEIPPKVK 3
W NLWN+ +PPKVK
Sbjct: 458 ELWT--NLWNVSVPPKVK 473
>ref|XP_012080571.1| uncharacterized protein LOC105640788 [Jatropha curcas]
Length = 813
Score = 63.2 bits (152), Expect = 4e-08
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -1
Query: 215 LFCDRDVRQISNIPLSNFDEEDIRV*HFDNKGRYLVRSGYRLAVDCSINGSD--GNSWVR 42
LF RDV I IPLS F+ +D HFD KG Y V+SGY +A+ G D G W
Sbjct: 512 LFHPRDVDSILKIPLSLFNRQDHITWHFDKKGYYSVKSGYDVALRVVGRGVDPVGGEW-W 570
Query: 41 RNLWNLEIPPKVK 3
++LWNL +PPKVK
Sbjct: 571 KSLWNLNVPPKVK 583
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein, partial
[Zea mays]
Length = 969
Score = 62.8 bits (151), Expect = 5e-08
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
++H +SC + Q+N AERK IVEVG SLLA + +PL+F +AF YLIN TP+K
Sbjct: 447 ISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKI 506
Query: 470 LTCMHIPF*IAHSRKPD 520
L + PF ++PD
Sbjct: 507 LN-LDTPFERLFHKQPD 522
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 62.8 bits (151), Expect = 5e-08
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
++H +SC + Q+N AERK IVEVG SLLA + +PL+F +AF YLIN TP+K
Sbjct: 447 ISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKI 506
Query: 470 LTCMHIPF*IAHSRKPD 520
L + PF ++PD
Sbjct: 507 LN-LDTPFERLFHKQPD 522
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gb|ABF96679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1437
Score = 62.0 bits (149), Expect(2) = 5e-08
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Frame = +2
Query: 302 MTHRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKT 469
+TH +SC + Q+N AERK IVEVG +LLA S +PL+F +AF YLIN TPS+
Sbjct: 598 ITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRV 657
Query: 470 L 472
L
Sbjct: 658 L 658
Score = 22.7 bits (47), Expect(2) = 5e-08
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 541 FGCQCYPQLR 570
FGC C+P LR
Sbjct: 680 FGCACWPNLR 689
>gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygrometricum]
Length = 706
Score = 62.0 bits (149), Expect(2) = 6e-08
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLT 475
HR SC Y S++N + ERK +V+ G SLLA + LP F DAF YLIN PS +L
Sbjct: 572 HRFSCPYTSKQNGVVERKHRHVVDTGLSLLAHASLPFEFWEDAFFSAVYLINRLPSPSLG 631
Query: 476 CMHIPF*IAHSRKPD 520
PF + R+PD
Sbjct: 632 AKS-PFFCLYGRRPD 645
Score = 22.7 bits (47), Expect(2) = 6e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 541 FGCQCYPQLRSLGT 582
FGC C+P LR T
Sbjct: 652 FGCLCFPCLRPYNT 665
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 61.6 bits (148), Expect(2) = 7e-08
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLT 475
HR+SC + S++N + ERK IVE+G +LLAQ+ LPL++ PDAF +LIN P++ L
Sbjct: 463 HRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLK 522
Query: 476 CMHIPF*IAHSRKPD*TSL 532
P+ + KP+ + L
Sbjct: 523 -QKCPYEFLFNSKPNYSQL 540
Score = 22.7 bits (47), Expect(2) = 7e-08
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 541 FGCQCYPQLR 570
FGC C+P LR
Sbjct: 543 FGCLCFPHLR 552
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 61.6 bits (148), Expect(2) = 7e-08
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Frame = +2
Query: 308 HRISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLT 475
HR+SC + S++N + ERK IVE+G +LLAQ+ LPL++ PDAF +LIN P++ L
Sbjct: 709 HRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLK 768
Query: 476 CMHIPF*IAHSRKPD*TSL 532
P+ + KP+ + L
Sbjct: 769 -QKCPYEFLFNSKPNYSQL 786
Score = 22.7 bits (47), Expect(2) = 7e-08
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 541 FGCQCYPQLR 570
FGC C+P LR
Sbjct: 789 FGCLCFPHLR 798
>dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifolium subterraneum]
Length = 1021
Score = 62.0 bits (149), Expect = 9e-08
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Frame = +2
Query: 311 RISCHYISQKNSLAERKQMQIVEVGFSLLAQSKLPLRF*PDAF----YLINTTPSKTLTC 478
R+SC Y SQ+N AERK I E G +LLAQ+K+PL + +AF YLIN PS +T
Sbjct: 487 RMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPS-PVTH 545
Query: 479 MHIPF*IAHSRKPD*TSL 532
P+ + H ++PD SL
Sbjct: 546 NESPYSLLHKKEPDYNSL 563