BLASTX nr result
ID: Rehmannia29_contig00036504
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00036504
(441 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 155 1e-41
ref|XP_020271031.1| uncharacterized protein LOC109846218 [Aspara... 109 2e-27
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 108 1e-24
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 101 1e-22
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 101 4e-22
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 101 5e-22
emb|CAA37920.1| unnamed protein product, partial [Arabidopsis th... 100 1e-21
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 100 1e-21
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus] 100 1e-21
ref|XP_020262757.1| uncharacterized protein LOC109838746 [Aspara... 93 2e-21
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 99 5e-21
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 97 1e-20
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 97 1e-20
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 96 3e-20
gb|PON85525.1| hypothetical protein TorRG33x02_186740 [Trema ori... 88 7e-20
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo... 95 1e-19
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 94 1e-19
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 94 1e-19
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 94 2e-19
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo... 94 2e-19
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 155 bits (392), Expect = 1e-41
Identities = 74/124 (59%), Positives = 98/124 (79%), Gaps = 3/124 (2%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEP--EELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFE 194
++V ++E+ ++L D P ++L +YQLARDR RR ++R+P FDDF + S+VF+VFE
Sbjct: 459 DDVSDSELSENLQDQTVELPNVDDLSDYQLARDRPRREHVRKPKHFDDFHLASHVFNVFE 518
Query: 193 SIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
S+D EPK+Y+DALKS+ S EWLN+M++EMNSLHVN TW LVPKP NCS+VDC WLFKVK
Sbjct: 519 SLDGNEPKSYKDALKSDKSTEWLNSMNDEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVK 578
Query: 13 NEND 2
NE D
Sbjct: 579 NEVD 582
>ref|XP_020271031.1| uncharacterized protein LOC109846218 [Asparagus officinalis]
Length = 160
Score = 109 bits (272), Expect = 2e-27
Identities = 53/107 (49%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Frame = -3
Query: 337 DDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMIS-----YVFSVFESIDNCEP 173
D++ DLND YQL RDR +R IR+P R+ D +I + F+VFES++ EP
Sbjct: 62 DNMHDLND--------YQLTRDRNKRTIRKPERYRDCNLIDCNMSEFAFNVFESLECNEP 113
Query: 172 KTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCK 32
KTY++AL+S++S+EW++AM EM SL +N W LVPKP +CS+VDCK
Sbjct: 114 KTYREALRSKYSEEWISAMKSEMKSLRINQIWKLVPKPASCSVVDCK 160
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 108 bits (271), Expect = 1e-24
Identities = 53/118 (44%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESI 188
EN++ +EM++++V ++NE + L +Y LARD RR NIR P+RF+D ++Y + E +
Sbjct: 671 ENLEESEMNEEVVG-SENE-QSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDL 728
Query: 187 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
+ EPK+Y++ALKS ++W NAM EEM+S ++TW L+ KPE L+ CKW+FK+K
Sbjct: 729 EEEEPKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLK 786
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 101 bits (251), Expect = 1e-22
Identities = 50/118 (42%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESI 188
EN++ +E +++ VD ++NE + L +Y LAR+R RR NIR P+RF D ++Y + E +
Sbjct: 143 ENLEESETNEE-VDGSENE-QSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDL 200
Query: 187 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
+ EPK+Y++A+K ++W +AM EEM+S ++TW L+ KPE L+ CKW+FK+K
Sbjct: 201 EIEEPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLK 258
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 101 bits (252), Expect = 4e-22
Identities = 50/116 (43%), Positives = 65/116 (56%)
Frame = -3
Query: 361 NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDN 182
N +N E+ D L NYQL RD RR+IR P RF M++Y S+ E +
Sbjct: 396 NKENGEVKDKFETKPQQYDIPLENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSC 455
Query: 181 CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
EPK Y +A+ + S +W+ AM EE SL N TW LV KP+ C +V CKW+FK K
Sbjct: 456 AEPKNYLEAISCKDSPKWMTAMQEEFESLLKNGTWQLVDKPKGCKVVGCKWVFKKK 511
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 101 bits (251), Expect = 5e-22
Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEPEE---LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFE 194
E+ +N E + V+ D E L NYQLA+DR RR I P RF + +++ V E
Sbjct: 451 ESDENDEQEPETVNETDPTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFALVVVE 510
Query: 193 SIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
S+ EP++YQ+A + + +W NA HEEM+SL N TW LV KP N ++ C+WLFK+K
Sbjct: 511 SLSLEEPESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLK 570
Query: 13 N 11
+
Sbjct: 571 S 571
>emb|CAA37920.1| unnamed protein product, partial [Arabidopsis thaliana]
Length = 494
Score = 99.8 bits (247), Expect = 1e-21
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 188
E+VD + + V+L + + L NYQLARDR RR I P RF + +++ E++
Sbjct: 7 ESVDEEQEPEPQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETL 66
Query: 187 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN 11
EP++YQ+A ++ ++W A HEEM+SL N TW+LV KP++ ++ C+WLFK+K+
Sbjct: 67 SMEEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKS 125
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 100 bits (248), Expect = 1e-21
Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 188
E+V+ + + V+L + + L NYQLARDR RR I P RF + +++ E++
Sbjct: 782 ESVEEEQEPETQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETL 841
Query: 187 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN 11
EP++YQ+A + ++W A HEEM+SL N TW+LV KP+N ++ C+WLFK+K+
Sbjct: 842 SMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKS 900
>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1308
Score = 100 bits (248), Expect = 1e-21
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Frame = -3
Query: 289 YQLARDRTRRNIRQPTRFDDFQMIS-YVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMH 113
Y +A++R RR I+ P RF D + IS YVF E D+ EP TY +A+ SE S+ W AM
Sbjct: 750 YSIAKERPRRQIKPPLRFRDEEDISAYVFMAAELEDSTEPLTYNEAIASEDSERWQVAMQ 809
Query: 112 EEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
EEM+SLH N TW+LV KP+ +V CKW+FK+K
Sbjct: 810 EEMDSLHKNQTWVLVDKPKGQKIVTCKWIFKLK 842
>ref|XP_020262757.1| uncharacterized protein LOC109838746 [Asparagus officinalis]
Length = 136
Score = 93.2 bits (230), Expect = 2e-21
Identities = 38/59 (64%), Positives = 51/59 (86%)
Frame = -3
Query: 178 EPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEND 2
EPKTY++AL+S++S+EW++AM EM SL +N TW LVPKP +CS+VDCKWLFKVK E++
Sbjct: 33 EPKTYREALRSKYSEEWISAMKSEMESLRINQTWKLVPKPASCSVVDCKWLFKVKQESE 91
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 98.6 bits (244), Expect = 5e-21
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Frame = -3
Query: 337 DDLVDLNDNEPEE-LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQ 161
+++V NEP + L +Y L RDR +R ++ P R+ +M ++ SV E I + EPKTYQ
Sbjct: 716 EEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQ 775
Query: 160 DALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
+A+ S + +W+ A+ EEM+SL N TW LV KP++ +V KW+FK K
Sbjct: 776 EAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRK 824
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment)
emb|CAA37924.1| unnamed protein product, partial [Arabidopsis thaliana]
Length = 1084
Score = 97.4 bits (241), Expect = 1e-20
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 188
E+VD + + V+L + + L NYQL RDR RR I P RF + +++ E++
Sbjct: 682 ESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVETL 741
Query: 187 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN 11
EP++YQ+A + ++W A HEE NSL N TW+LV KP++ ++ C+WLFK+K+
Sbjct: 742 SMEEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKS 800
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 97.4 bits (241), Expect = 1e-20
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = -3
Query: 301 ELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLN 122
+L NYQLARDR RR +R P R+ +I+Y + + EP + +A++S H +WL
Sbjct: 772 DLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLE 831
Query: 121 AMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE 8
AM +EM SL N TW L+P P N L++CKW+FK +NE
Sbjct: 832 AMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNE 868
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 96.3 bits (238), Expect = 3e-20
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Frame = -3
Query: 364 ENVDNAEMHDDLVDLNDNEPEELG--NYQLARDRTRRNIRQPTRFDDFQMISYVFSVFES 191
E ++E + + P+ G Y+LARDR RRNI PTRF + +++ V E+
Sbjct: 774 EQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVEN 833
Query: 190 IDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN 11
EP++YQ+A++S+ ++W A H+EM+SL N TW LV KP++ ++ C+WLFK+K+
Sbjct: 834 CIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKS 893
>gb|PON85525.1| hypothetical protein TorRG33x02_186740 [Trema orientalis]
Length = 106
Score = 88.2 bits (217), Expect = 7e-20
Identities = 41/95 (43%), Positives = 63/95 (66%)
Frame = -3
Query: 343 MHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTY 164
M +++ L ++ EEL N+QL+RDRTRR IR P R+ + IS+ +V I+ EP +Y
Sbjct: 1 MIENIEQLGLDQQEELQNHQLSRDRTRRQIRAPDRYGFAEYISFALTVARDIEGVEPMSY 60
Query: 163 QDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKP 59
++ L ++S +W+ AM++EM SL N TW+LV KP
Sbjct: 61 KETLSDKNSFKWVEAMNDEMESLKKNQTWVLVEKP 95
>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 993
Score = 94.7 bits (234), Expect = 1e-19
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Frame = -3
Query: 316 DNEPEELG----NYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALK 149
+NEPE + +Y L+RDR RRNI+ P+++ ++I Y ++ EP +Y++A+
Sbjct: 694 ENEPEPVSENNHDYLLSRDRERRNIKPPSKYGYAELIEYALLSALEYEDSEPISYKEAVS 753
Query: 148 SEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN 5
+ S+ W+ AM +E +SL NNTWILV K EN +V CKW++K+K N
Sbjct: 754 CKDSENWVKAMQDEYDSLIKNNTWILVNKKENQKVVSCKWIYKIKEGN 801
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 94.4 bits (233), Expect = 1e-19
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Frame = -3
Query: 370 MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDF------QMISYV 209
M VD+ ++D ND++ +A R RR IR+P R+ D +++
Sbjct: 850 MENGVDDTSEEQPVIDQNDSQ-------SIAAHRPRREIRRPMRYVDCVSANITNPVAFA 902
Query: 208 FSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKW 29
+V E I EP++Y++A++S+ S++WL++M +EM SL N TW LVP PE VDCKW
Sbjct: 903 LAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKW 962
Query: 28 LFKVKN 11
LFK+K+
Sbjct: 963 LFKIKD 968
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 94.4 bits (233), Expect = 1e-19
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Frame = -3
Query: 370 MPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDF------QMISYV 209
M VD+ ++D ND++ +A R RR IR+P R+ D +++
Sbjct: 1063 MENGVDDTSEEQPVIDQNDSQ-------SIAAXRPRREIRRPMRYVDCVSANITNPVAFA 1115
Query: 208 FSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKW 29
+V E I EP++Y++A++S+ S++WL++M +EM SL N TW LVP PE VDCKW
Sbjct: 1116 LAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKW 1175
Query: 28 LFKVKN 11
LFK+K+
Sbjct: 1176 LFKIKD 1181
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 94.0 bits (232), Expect = 2e-19
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Frame = -3
Query: 364 ENVDNAEMH--DDLVDLNDN--EPEELGN-YQLARDRTRRNIRQPTRFDDFQMISYVFSV 200
E+VD AE+H D++ + +N E EE + Y L+RDR+RR I+ P R +I+Y
Sbjct: 727 EHVD-AELHIPDEVEEEAENAEEVEETDDDYLLSRDRSRRVIKAPQRLGYADLIAYALIS 785
Query: 199 FESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFK 20
+ + EP+ Y++ ++S + EWL AM +EM SLH N+TW L+ KP LV CKW+FK
Sbjct: 786 ASEVLDEEPRDYKEVMRSRNKTEWLKAMDDEMKSLHDNHTWELIKKPAGARLVSCKWIFK 845
Query: 19 VK 14
VK
Sbjct: 846 VK 847
>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 516
Score = 93.6 bits (231), Expect = 2e-19
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = -3
Query: 316 DNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSV-FESIDNCEPKTYQDALKSEH 140
D+E + +Y LARDR RR + P R+ ++S+ F+V + D+ EPK+Y +A++S+
Sbjct: 295 DDEERSIQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKD 354
Query: 139 SQEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK 14
WL AM EEM SL N TWILV KP+ +V KW+FK K
Sbjct: 355 KNSWLKAMKEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRK 396