BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00036453
         (933 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt...   169   8e-52
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo...   167   1e-50
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]   145   6e-49
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   172   1e-48
emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]   144   3e-47
gb|PKU81159.1| Retrovirus-related Pol polyprotein from transposo...   150   1e-46
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   177   5e-46
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]   157   6e-46
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   174   4e-45
ref|XP_024011200.1| uncharacterized protein LOC112086480 [Eutrem...   139   9e-44
gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposo...   161   3e-43
gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposo...   160   3e-43
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   168   5e-43
gb|KYP37003.1| Retrovirus-related Pol polyprotein from transposo...   159   1e-42
gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposo...   163   2e-42
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   163   3e-41
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   161   1e-40
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   161   1e-40
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   160   2e-40
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]   132   2e-40

>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
          Length = 1387

 Score =  169 bits (429), Expect(2) = 8e-52
 Identities = 90/203 (44%), Positives = 113/203 (55%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T +TLLKG LK+GLYQ    + C+                                 
Sbjct: 402 DKLTGQTLLKGRLKDGLYQLSNKEPCVY-------------------------------- 429

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
           M   E WH++LGHP+  V  K L   ++   + +   FC  C   K H LPF  SS    
Sbjct: 430 MSVKESWHRKLGHPNNKVLDKVLKDCNVKISHSDQFSFCEACQFGKLHLLPFKPSSSHVQ 489

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           EPL LIH+D+WGPAPI+S +G  YYV FIDD SRF WI+ LK KSDT  AF+ FK L EN
Sbjct: 490 EPLALIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAEN 549

Query: 854 QFNKKIKVIRSDGGTEYKPLTKL 922
           QFNKKIK+I+ DGG EYK + K+
Sbjct: 550 QFNKKIKIIQCDGGGEYKAVQKV 572



 Score = 63.9 bits (154), Expect(2) = 8e-52
 Identities = 37/108 (34%), Positives = 51/108 (47%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQ+C  + H A  C  RF+  +T    S      TE +K     SA IA+   G +  WY
Sbjct: 261 CQVCNGTGHIAVDCSYRFDRPYTGRNYS------TEADKQ-GSHSAFIASPYHGQDYEWY 313

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGN 333
            DSGA +H+T+         ++NG   L +GNG  L I   GS+   N
Sbjct: 314 FDSGANNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNN 361


>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 677

 Score =  167 bits (424), Expect(2) = 1e-50
 Identities = 93/203 (45%), Positives = 120/203 (59%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T + LL+G LK+GLYQ                S+T+  P              V   
Sbjct: 404 DKLTGKVLLRGILKDGLYQLS-----------NGSSQTNKDPC-------------VYLS 439

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
           +K  E WH++LGHPS +V  K L   ++     +  KFC  C   K+H LPF  SS  + 
Sbjct: 440 VK--ESWHRKLGHPSNNVLDKVLKICNVKTSPSDKFKFCEACQLGKSHLLPFKSSSSHAQ 497

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           E L+LIHTD+WGPAPI S +G  YYV FIDD SRF WIY LK KSDT  AF+ FK +VEN
Sbjct: 498 EVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTWIYPLKQKSDTIHAFMQFKNMVEN 557

Query: 854 QFNKKIKVIRSDGGTEYKPLTKL 922
           QFNK+IK+I+ DGG E+KP+ K+
Sbjct: 558 QFNKRIKIIQCDGGGEFKPVQKV 580



 Score = 62.0 bits (149), Expect(2) = 1e-50
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFT----PNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSE 177
           CQ+C    HTA +C +R++  +T     N N + QR+           +A +A+     +
Sbjct: 262 CQVCNKHGHTAIECDHRYDKSYTGSSYSNANVERQRTH----------NAFLASRYNSQD 311

Query: 178 VNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGN 333
             WY DSGA++H+T+         + +G   L +GNGA L I   GSS   N
Sbjct: 312 YEWYFDSGASNHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKLKN 363


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score =  145 bits (365), Expect(2) = 6e-49
 Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 3/201 (1%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKP--QVRNISSFFSYVA 487
           D+ TK  L +G L+NGLY+F           P F +K      KP   V N S+F S+ +
Sbjct: 254 DRHTKMVLAQGKLENGLYKF-----------PVFSNK------KPYSSVNNASAFHSHFS 296

Query: 488 SPMKS-LELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSD 664
           S +++  ELWH RLGH + D+  K +   ++      S   CS C  AK+H+LP  +S+ 
Sbjct: 297 STIENKAELWHNRLGHVASDIVSKVMNTCNVASGKYKST-VCSDCQLAKSHRLPTQLSNF 355

Query: 665 FSNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKL 844
            +++PL+L++TD+WGPA + S++G  Y++ F+DD+SR+ W Y L++   T   F  FK  
Sbjct: 356 RASKPLELVYTDIWGPASVKSTSGAKYFILFVDDYSRYTWFYSLQTNDQTLPIFKRFKLQ 415

Query: 845 VENQFNKKIKVIRSDGGTEYK 907
           +ENQF+ KIK ++SD G E++
Sbjct: 416 MENQFDMKIKCLQSDNGGEFR 436



 Score = 79.0 bits (193), Expect(2) = 6e-49
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIAT-TDQGSEVNW 186
           CQ+CG   HTA  CY+RF+  F     + S  S   GN+N     AM+A+ ++  ++ +W
Sbjct: 139 CQLCGKFGHTAQICYHRFDISFQGGXTTTSP-SLNNGNQN--NILAMVASFSNSSADESW 195

Query: 187 YPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGS 318
           Y DSGA+HH+T +  NL   + Y G  ++ IGN   L IS++GS
Sbjct: 196 YLDSGASHHLTQNLGNLTSTSPYTGTDRVTIGNXKHLSISNIGS 239


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  172 bits (435), Expect(2) = 1e-48
 Identities = 94/204 (46%), Positives = 118/204 (57%), Gaps = 1/204 (0%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T + LLKG LK GLYQ                           V N+SS  +  A  
Sbjct: 127 DKLTGKALLKGKLKEGLYQ---------------------------VSNVSSQSNKDACT 159

Query: 494 MKSL-ELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFS 670
             S+ E WH++LGHP+  V  K L   ++   + +  KFC  C   K H LPF  S   +
Sbjct: 160 YMSVKESWHRKLGHPNNKVLDKVLKHCNVKTSSSDQFKFCEACQFGKLHLLPFKSSYSHA 219

Query: 671 NEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVE 850
            EPL LIHTD+WGPAPI+S++G  YYV FIDD SRF WIY LK KS+T  AF  FK LVE
Sbjct: 220 QEPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFKTLVE 279

Query: 851 NQFNKKIKVIRSDGGTEYKPLTKL 922
           NQFNK+IK+++ DGG EYK + KL
Sbjct: 280 NQFNKRIKIVQCDGGGEYKAVQKL 303



 Score = 50.8 bits (120), Expect(2) = 1e-48
 Identities = 30/95 (31%), Positives = 46/95 (48%)
 Frame = +1

Query: 49  CYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDF 228
           C  RF+  ++  TN  ++R+          +SA IA+   G +  WY DSGA++H+T+  
Sbjct: 2   CDYRFDKSYS-GTNQLAERT---------HNSAFIASPYNGQDYEWYFDSGASNHVTHQT 51

Query: 229 SNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGN 333
                   +NG   L +GNG  L I   GS+   N
Sbjct: 52  DKFQDLTGHNGKNSLMVGNGEKLKIVASGSTKLKN 86


>emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]
          Length = 1079

 Score =  144 bits (364), Expect(2) = 3e-47
 Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 7/208 (3%)
 Frame = +2

Query: 314  DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
            DQV+K  +L+G LK GLY F   +  LK S P   S + ++ S       +   S   S 
Sbjct: 380  DQVSKIVVLEGKLKGGLYAFDSSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQVSIHVSD 439

Query: 494  MKS------LELWHKRLGHPSYDVTKKALVASDIPFVNENSNKF-CSHCVQAKAHKLPFP 652
            ++S      + +WH RLGHPS+ + +  +    +   N+    F C  C   K H LPFP
Sbjct: 440  LQSQNGSSTVGIWHDRLGHPSFKIVQTVMSLCKLSKFNKILPNFVCKACCLGKIHMLPFP 499

Query: 653  VSSDFSNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVH 832
             S     EPLQL+++DLWGP+P+ SSNG+ YYV F+D  SR+ WIY L++KS++F  F +
Sbjct: 500  TSISEYQEPLQLVYSDLWGPSPVQSSNGYKYYVCFVDAFSRYNWIYLLRNKSNSFQTFQN 559

Query: 833  FKKLVENQFNKKIKVIRSDGGTEYKPLT 916
            FK   + Q   KIK ++SD   E+   T
Sbjct: 560  FKAQAKLQLGFKIKCLQSDWRGEFCAFT 587



 Score = 73.6 bits (179), Expect(2) = 3e-47
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDF--------TPNTNSQSQRSFTEGNKNFAQSSAMIATTD 165
           CQ+C    H+AD+CY R++P F        TP+     Q     GNK   Q   ++AT +
Sbjct: 282 CQVCMKIGHSADRCYYRYDPSFQGPHTPGFTPSFQKSPQTQIQGGNKPNMQ--VLMATPE 339

Query: 166 QGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGN 285
              + NWYPDSGA++H+T + +NL     Y G+ ++++GN
Sbjct: 340 NICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGN 379


>gb|PKU81159.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1109

 Score =  150 bits (380), Expect(2) = 1e-46
 Identities = 80/202 (39%), Positives = 118/202 (58%)
 Frame = +2

Query: 299 TFHMLDQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFS 478
           TF + D VT+E LL+G  K GLY                      +P +P  R  S+   
Sbjct: 162 TFTLKDLVTQEILLQGPAKEGLY---------------------AIPMQPPSRQHSA--- 197

Query: 479 YVASPMKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVS 658
            +++ ++  ++WH+RLGHP   V       + I  +N++S+  C  C  AK HK+ FP S
Sbjct: 198 -LSAQLEEAKIWHQRLGHPHKRVFDFISSCNPILHMNKHSSH-CDSCTAAKCHKIVFPSS 255

Query: 659 SDFSNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFK 838
            +   +PL LIH+D+WGPAPIVS+ G  +YV F+DD++R+ WI+ L+ KSD F+ FV+FK
Sbjct: 256 PNRQTQPLALIHSDVWGPAPIVSNQGFKFYVIFVDDYTRYTWIFPLRYKSDVFSTFVNFK 315

Query: 839 KLVENQFNKKIKVIRSDGGTEY 904
             VEN   + IK +R+DGGTE+
Sbjct: 316 NQVENFTLQHIKTLRTDGGTEF 337



 Score = 65.5 bits (158), Expect(2) = 1e-46
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQIC    H+A  C++R +  + P             NKN   ++A++A++D   E  W+
Sbjct: 35  CQICSKKGHSASSCWHRLDMQYIPP------------NKN--ANTALMASSDN-PEATWF 79

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGS 318
            DSGA+ H TN   NL+ +  Y G   + IG+G  + I+H G+
Sbjct: 80  LDSGASSHFTNSLENLSLSKPYLGSDNVTIGDGNSVSIAHAGA 122


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  177 bits (448), Expect = 5e-46
 Identities = 94/203 (46%), Positives = 119/203 (58%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T + +LKG LK+GLYQ    K                       RN S+F S   S 
Sbjct: 400 DKLTGKVILKGLLKDGLYQLSGTK-----------------------RNPSAFVSVKES- 435

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
                 WH+RLGHP+  V  K L +  +     ++  FC  C   K H LPF  SS  + 
Sbjct: 436 ------WHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQ 489

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           EPL+L+HTD+WGPAPI++S+G  YYV F+DD SRF WIY LK KS+T  AF+ FK L EN
Sbjct: 490 EPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTEN 549

Query: 854 QFNKKIKVIRSDGGTEYKPLTKL 922
           QFNK+IKVI+ DGG EYKP+ KL
Sbjct: 550 QFNKRIKVIQCDGGGEYKPVQKL 572



 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 33/104 (31%), Positives = 56/104 (53%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQ+CG SNH A  C++RF+  ++ + +S        G+      +A +A+ +   + +WY
Sbjct: 259 CQVCGLSNHIAIDCFHRFDKTYSRSNHSA-------GHDKQGSHNAFLASQNSVEDYDWY 311

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
            DSGA++H+T+         +++G   L +GNG  L I   GSS
Sbjct: 312 FDSGASNHVTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATGSS 355


>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
          Length = 1270

 Score =  157 bits (397), Expect(2) = 6e-46
 Identities = 84/199 (42%), Positives = 115/199 (57%), Gaps = 2/199 (1%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           DQVTK+TLLKG LK+GLY+F               S TH   S   +  ++         
Sbjct: 329 DQVTKQTLLKGWLKDGLYEFPS------------SSSTHAFVSTSSIPALTPG------- 369

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKF--CSHCVQAKAHKLPFPVSSDF 667
                +WH RLGHP+  +  KAL   + P V+   NK   C  C  AK+H LP+ +SS  
Sbjct: 370 ----AIWHSRLGHPAAPILSKALAFCN-PSVSFQINKIAPCKICPLAKSHSLPYSLSSSH 424

Query: 668 SNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLV 847
           +++PL LIHTDLWGPAP  S++   Y++ FIDD+SR+ WIYFL +K    + F+ F+K++
Sbjct: 425 ASQPLALIHTDLWGPAPSPSTSSARYFLLFIDDYSRYTWIYFLSTKDQALSTFITFRKMI 484

Query: 848 ENQFNKKIKVIRSDGGTEY 904
           ENQ N  IK I+SD G E+
Sbjct: 485 ENQLNSTIKCIQSDNGGEF 503



 Score = 56.6 bits (135), Expect(2) = 6e-46
 Identities = 32/101 (31%), Positives = 49/101 (48%)
 Frame = +1

Query: 1   RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEV 180
           R  CQ+CG   HT  KCY+RF+  +       S +  +       Q+   IA   Q S  
Sbjct: 233 RPQCQLCGKFGHTVVKCYHRFDITYQGTNGVSSSQDSSP-----LQAMLTIAPDHQDS-- 285

Query: 181 NWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDI 303
            W+ D+GATHH+++    L+    Y+G  ++ I +G  L I
Sbjct: 286 -WFFDTGATHHLSHSAQTLSHVQPYSGADQVTIADGHSLPI 325


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 1242

 Score =  174 bits (441), Expect = 4e-45
 Identities = 94/209 (44%), Positives = 119/209 (56%)
 Frame = +2

Query: 305 HMLDQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYV 484
           ++ D++T + LLKG LK+GLYQ    K      PP  +     +  K             
Sbjct: 399 YVKDKLTGKALLKGRLKDGLYQLSANKE-----PPTNKDPCAYISLK------------- 440

Query: 485 ASPMKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSD 664
                  E+WH++LGHP+  V +K L  +++     +   FC  C   K H LPF  SS 
Sbjct: 441 -------EIWHRKLGHPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLPFKTSSS 493

Query: 665 FSNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKL 844
            + EPL LIHTD+WGPAPI+S +   YYV F+DD SRF WI+ LK KS+T  AF  FK L
Sbjct: 494 HAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNL 553

Query: 845 VENQFNKKIKVIRSDGGTEYKPLTKLFSD 931
           VENQFNKKIKVIR DGG EYKP+ K   D
Sbjct: 554 VENQFNKKIKVIRCDGGGEYKPVQKCAID 582



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 38/104 (36%), Positives = 53/104 (50%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQICG   HTA +CY RF+  +T   +      + EG       SA +A+   G +  WY
Sbjct: 263 CQICGKFGHTAAQCYYRFDKSYTEKNH------YAEGE---GSHSAFVASPYHGQDYEWY 313

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
            DSGA++H+T+    L    + NG   L +GNG  L I   GS+
Sbjct: 314 FDSGASNHVTHQSGQLQDLNENNGKNSLLVGNGEKLKILASGST 357


>ref|XP_024011200.1| uncharacterized protein LOC112086480 [Eutrema salsugineum]
          Length = 3054

 Score =  139 bits (351), Expect(2) = 9e-44
 Identities = 79/199 (39%), Positives = 107/199 (53%), Gaps = 2/199 (1%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQ--FQSKTHTLPSKPQVRNISSFFSYVA 487
           D+ TK  LL G   NGLY+       LK+ P Q  F S+ H +                 
Sbjct: 452 DKTTKRVLLSGSSANGLYR-------LKNQPAQAYFSSRQHCV----------------- 487

Query: 488 SPMKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDF 667
               S ++WHKRLGHP+  V    L ++    ++ + N+ C  C   K+ +LPF  SS  
Sbjct: 488 ----SNDVWHKRLGHPNKQVLH-LLSSNQAIKISTSINRMCESCQLGKSSRLPFYQSSFS 542

Query: 668 SNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLV 847
           ++ PL+ +H+DLWGPAP+VS  G  +YV FID  SRF W Y LK KSD +  F  F+ +V
Sbjct: 543 ASRPLERVHSDLWGPAPVVSGQGFRFYVVFIDHWSRFCWFYPLKYKSDFYATFCVFQHMV 602

Query: 848 ENQFNKKIKVIRSDGGTEY 904
           ENQFN KI   + DGG E+
Sbjct: 603 ENQFNCKIGTFQCDGGGEF 621



 Score =  138 bits (348), Expect(2) = 9e-44
 Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 2/199 (1%)
 Frame = +2

Query: 314  DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQ--FQSKTHTLPSKPQVRNISSFFSYVA 487
            D+ TK  LL G   NGLY+       LK+ P Q  F S+ H +                 
Sbjct: 1986 DKTTKRVLLSGSSTNGLYR-------LKNQPAQAYFSSRQHCV----------------- 2021

Query: 488  SPMKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDF 667
                S ++WH+RLGHP+  V    L ++    ++ + N+ C  C   K+ +LPF  SS  
Sbjct: 2022 ----SNDVWHRRLGHPNKQVLH-LLSSNQAIKISTSINRMCESCQLGKSSRLPFYQSSFS 2076

Query: 668  SNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLV 847
            ++ PL+ +H+DLWGPAP+VS  G  +YV FID  SRF W Y LK KSD +  F  F+ +V
Sbjct: 2077 ASRPLERVHSDLWGPAPVVSGQGFRFYVVFIDHWSRFCWFYPLKYKSDFYATFCVFQHMV 2136

Query: 848  ENQFNKKIKVIRSDGGTEY 904
            ENQFN KI   + DGG E+
Sbjct: 2137 ENQFNCKIGTFQCDGGGEF 2155



 Score = 68.2 bits (165), Expect(2) = 9e-44
 Identities = 35/113 (30%), Positives = 59/113 (52%)
 Frame = +1

Query: 1    RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEV 180
            ++ CQICG   H A KC++RF+  +           + +G    A ++  I    + S +
Sbjct: 1861 KVSCQICGKLGHPALKCWHRFDNAY----------QYEDGPS--AMAAMRITDVTESSGL 1908

Query: 181  NWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGNSS 339
             WYPD+GA+ H+T+   +L  +  Y G   + +GNG  L I+H GS+   ++S
Sbjct: 1909 EWYPDTGASAHVTSSPQHLQQSQSYAGSDSVMVGNGEFLPITHTGSTTLASTS 1961



 Score = 67.0 bits (162), Expect(2) = 9e-44
 Identities = 35/113 (30%), Positives = 59/113 (52%)
 Frame = +1

Query: 1   RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEV 180
           R+ CQICG   H A KC++RF+  +           + +G    A ++  I    + S +
Sbjct: 327 RVSCQICGKLGHPALKCWHRFDNAY----------QYEDGPS--AMAAMRITDVTESSGL 374

Query: 181 NWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGNSS 339
            WYPD+GA+ ++T+   +L  +  Y G   + +GNG  L I+H GS+   ++S
Sbjct: 375 EWYPDTGASAYVTSSPQHLQQSQSYAGSDSVMVGNGEFLPITHTGSTTLASTS 427


>gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 363

 Score =  161 bits (408), Expect = 3e-43
 Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
 Frame = +2

Query: 317 QVTKETLLKGDL-KNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           QVT E L++G++  +GLY F  L+  L+ +P    +   +  S   V ++    +  +S 
Sbjct: 79  QVTNEVLVQGNVGSDGLYCFPNLQ--LQAAPSNSSAFIVSNNSNTVVSDVDVLNNVKSS- 135

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
             S  LWH RLGHP++ V K      +IP VN+    FC+ C   KAH+LP  +S     
Sbjct: 136 --SHTLWHARLGHPNFHVQKLVSQQCNIPVVNKIDGFFCNACCMGKAHRLPSNLSDSVYK 193

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
            PL+L+++DLWGPAPI SSN + YY++F+D +SRF WIY L++KSDT T F  FK +VE 
Sbjct: 194 NPLELVYSDLWGPAPIQSSNNYKYYLSFVDAYSRFTWIYLLQNKSDTLTVFKQFKMMVEL 253

Query: 854 QFNKKIKVIRSDGGTEYKPLTKLFSD 931
           QFN  +K+++   G E++PL+K   D
Sbjct: 254 QFNTSLKILQIHWGGEFRPLSKYLKD 279


>gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 326

 Score =  160 bits (405), Expect = 3e-43
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 317 QVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASPM 496
           Q +KETLL+G+LKNGLY F  ++  LK  P  ++     +P+     N+  +        
Sbjct: 117 QDSKETLLRGNLKNGLYVFDEVQ-ILK--PDVYEDTVDPVPTNLTTLNVQRY-------R 166

Query: 497 KSLELWHKRLGHPSYDVTKKALVASDIPF-VNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
           +S ++WH RL H S  + K  +   ++P  +N   +  C  C   K+H LPF  S    N
Sbjct: 167 ESYDVWHNRLAHASRKIVKVVMKTCNVPLPINNKDSIVCKSCCIGKSHTLPFSYSFTVYN 226

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
            PL+L+++D+WGP+  VS  G  YYV F D +S++ WIYF+ +KS+T    +HFK +VEN
Sbjct: 227 SPLELVYSDVWGPSHYVSREGFRYYVHFTDAYSKYTWIYFMHNKSETAHHVIHFKTMVEN 286

Query: 854 QFNKKIKVIRSDGGTEYKPLTKLFSD 931
           QF  KIK+ +SDGG E+  LTK+F++
Sbjct: 287 QFGNKIKMFQSDGGKEFTCLTKIFNE 312



 Score = 60.8 bits (146), Expect = 8e-07
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +1

Query: 184 WYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS--HKGNSSQ 342
           WYPDSGAT+H+T D +NL    DY G  K+ +GNG  + I+H G+S  H   SS+
Sbjct: 20  WYPDSGATNHLTPDLNNLGSKIDYTGQDKIHMGNGQAIGINHTGTSFFHTSMSSK 74


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  168 bits (425), Expect = 5e-43
 Identities = 90/203 (44%), Positives = 113/203 (55%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T +TLLKG LK+GLYQ   +       P  + S                        
Sbjct: 402 DKLTGQTLLKGRLKDGLYQLSDVSPQSNKDPCVYMSVK---------------------- 439

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
               E WH++LGHP+  V +K L   ++     +   FC  C   K H LPF  SS    
Sbjct: 440 ----ESWHRKLGHPNNKVLEKVLKDCNVKISPSDQFSFCEACQFGKLHLLPFKSSSSHVQ 495

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           EPL LIH+D+WGPAPI+S +G  YYV FIDD SRF WI+ LK KSDT  AF+ FK L EN
Sbjct: 496 EPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAEN 555

Query: 854 QFNKKIKVIRSDGGTEYKPLTKL 922
           QFNKKIK+I+ DGG EYK + K+
Sbjct: 556 QFNKKIKIIQCDGGGEYKAVQKV 578



 Score = 65.5 bits (158), Expect = 5e-08
 Identities = 36/104 (34%), Positives = 52/104 (50%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQ+C  + HTA  C  RF+  +T    S      TE +K     SA +A+   G +  WY
Sbjct: 261 CQVCSGTGHTAVDCSYRFDRSYTGRNYS------TEADKQ-GSHSAFVASPYHGQDYEWY 313

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
            DSGA++H+T+         ++NG   L +GNG  L I   GS+
Sbjct: 314 FDSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGST 357


>gb|KYP37003.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 321

 Score =  159 bits (401), Expect = 1e-42
 Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
 Frame = +2

Query: 317 QVTKETLLKGDL-KNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           QVT E L++G++  +GLY F  L+  L+ +P    +   +  S   V ++    +  +S 
Sbjct: 79  QVTNEVLVQGNVGSDGLYCFPNLQ--LQAAPSNSSAFIVSNNSNIVVSDVDVLNNVKSS- 135

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
             S  LWH RLGHP++ V K      +IP VN+    FC+ C   KAH+LP  +S+    
Sbjct: 136 --SHTLWHARLGHPNFHVQKLVSQQCNIPVVNKIDGFFCNACCMGKAHRLPSNLSNSVYK 193

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
            PL+L++ DLWGPAPI SSN + YY++F+D +SRF WIY L++KSDT T F  FK +VE 
Sbjct: 194 NPLELVYRDLWGPAPIQSSNNYKYYLSFVDAYSRFTWIYLLQNKSDTLTVFKQFKMMVEL 253

Query: 854 QFNKKIKVIRSDGGTEYKPLTKLFSD 931
           QFN  +K +++D   E++PL+K   D
Sbjct: 254 QFNTSLKSLQTDWVGEFRPLSKYLKD 279


>gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 533

 Score =  163 bits (412), Expect = 2e-42
 Identities = 87/206 (42%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 317 QVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASPM 496
           Q +KETLL+G+LKNGLY F  ++  LK  P  ++   HT+ S P  R       YV    
Sbjct: 293 QDSKETLLRGNLKNGLYVFDEVQ-ILK--PDVYE---HTVDSVPTNRTTL----YVQRTR 342

Query: 497 KSLELWHKRLGHPSYDVTKKALVASDIPF-VNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
           KS ++WH RL H S  + +  +   ++P  +N   +  C  C   K+H LPF  S    N
Sbjct: 343 KSYDVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYN 402

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
            PL+L+++D+WGP+   S  G  YYV F D  S++ WIYF+ +KS+T   F+HFK +VEN
Sbjct: 403 SPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVEN 462

Query: 854 QFNKKIKVIRSDGGTEYKPLTKLFSD 931
           QF  KIK+ +SDGG E+  LTKLF++
Sbjct: 463 QFGHKIKMFQSDGGKEFTCLTKLFNE 488



 Score = 85.9 bits (211), Expect = 6e-15
 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIA-TTDQGSEVNW 186
           CQ+CG   H A  C++R++  +T    + +   +  GN+   Q  AMIA + +   +  W
Sbjct: 139 CQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQ--QMQAMIAGSQNMVYDDQW 196

Query: 187 YPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
           YPDSGAT+H+T+D +NL    DY G  K+ +GNG  + I+H G+S
Sbjct: 197 YPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTS 241


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  163 bits (412), Expect = 3e-41
 Identities = 87/206 (42%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
 Frame = +2

Query: 317  QVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASPM 496
            Q +KETLL+G+LKNGLY F  ++  LK  P  ++   HT+ S P  R       YV    
Sbjct: 427  QDSKETLLRGNLKNGLYVFDEVQ-ILK--PDVYE---HTVDSVPTNRTTL----YVQRTR 476

Query: 497  KSLELWHKRLGHPSYDVTKKALVASDIPF-VNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
            KS ++WH RL H S  + +  +   ++P  +N   +  C  C   K+H LPF  S    N
Sbjct: 477  KSYDVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYN 536

Query: 674  EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
             PL+L+++D+WGP+   S  G  YYV F D  S++ WIYF+ +KS+T   F+HFK +VEN
Sbjct: 537  SPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVEN 596

Query: 854  QFNKKIKVIRSDGGTEYKPLTKLFSD 931
            QF  KIK+ +SDGG E+  LTKLF++
Sbjct: 597  QFGHKIKMFQSDGGKEFTCLTKLFNE 622



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIA-TTDQGSEVNW 186
           CQ+CG   H A  C++R++  +T    + +   +  GN+   Q  AMIA + +   +  W
Sbjct: 273 CQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQ--QMQAMIAGSQNMVYDDQW 330

Query: 187 YPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
           YPDSGAT+H+T+D +NL    DY G  K+ +GNG  + I+H G+S
Sbjct: 331 YPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTS 375


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  161 bits (407), Expect = 1e-40
 Identities = 88/203 (43%), Positives = 118/203 (58%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T   LL+G +K+GLYQ            P   + T+    +P V     FFS     
Sbjct: 327 DKLTGRILLEGKIKDGLYQL-----------PGGSTSTN---KRPHV-----FFSIK--- 364

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
               E WH++LGHP+  V  + +   +I      + +FC  C   KAH LPF  S   + 
Sbjct: 365 ----ETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAK 420

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           EPL L+H+D+WGPAPI S +G  YYV F+DD SRF WIY LK KSD F AF+ F+ LVEN
Sbjct: 421 EPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVEN 480

Query: 854 QFNKKIKVIRSDGGTEYKPLTKL 922
           QFNK+IK ++ DGG E+K L+K+
Sbjct: 481 QFNKRIKTLQCDGGGEFKSLSKV 503



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
 Frame = +1

Query: 1   RIHCQICGYSNHTADKCYNRFNPDFT-PNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSE 177
           RI CQ+C    H A  CY+RFN ++   N++ Q      E N NF   +A +A+     +
Sbjct: 174 RIVCQVCCKPGHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNF---NAYVASPSTVED 230

Query: 178 VNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
           ++WY DSGA++H+T D + +    + +G   L +GNGA L I   G S
Sbjct: 231 LDWYFDSGASNHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDS 278


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  161 bits (407), Expect = 1e-40
 Identities = 89/203 (43%), Positives = 112/203 (55%), Gaps = 1/203 (0%)
 Frame = +2

Query: 314  DQVTKETLLKGDLKNGLYQFKLLKHCLK-HSPPQFQSKTHTLPSKPQVRNISSFFSYVAS 490
            D  T+  L+ G LK GLY F   +  L  H+   F S    LPSK          +  AS
Sbjct: 450  DPSTRTVLMHGQLKGGLYVFDNTQLKLPLHNSSCFASTA--LPSKEP--------TVPAS 499

Query: 491  PMKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFS 670
            P     LWH RLGHPS  +    L   ++P +N+  +  CS C   K HK  F  S+   
Sbjct: 500  PTSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSY 559

Query: 671  NEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVE 850
             +PL+LIHTDLWGPA   SS+GH YY+ FID +SRF WIY LK KS+ F  F+HFK  VE
Sbjct: 560  TKPLELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVE 619

Query: 851  NQFNKKIKVIRSDGGTEYKPLTK 919
             Q   KIK ++SD G EY+  T+
Sbjct: 620  LQLGHKIKAVQSDWGGEYRSFTQ 642



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQS-----------SAMIA 156
           CQ+CG   H   +CY RF+  FT  +  Q  R   +GN                 S    
Sbjct: 286 CQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRP--QGNMAHLHQQLSEXFFPGTPSVKPT 343

Query: 157 TTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSSHKGNS 336
           T +   + NWYPDSGATHH+T + +NL   + +    ++ +GNG GL I H+G +   +S
Sbjct: 344 TAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSS 403


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
           [Trifolium pratense]
          Length = 835

 Score =  160 bits (405), Expect = 2e-40
 Identities = 85/202 (42%), Positives = 114/202 (56%)
 Frame = +2

Query: 314 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 493
           D++T + +L+G LK+GLYQ                            ++ S++ S   S 
Sbjct: 409 DKLTGKAILRGILKDGLYQLS-------------------------EKDSSAYVSIKES- 442

Query: 494 MKSLELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFPVSSDFSN 673
                 WH++LGHP+  V    L + ++     +   FC  C   K H LPF  S   + 
Sbjct: 443 ------WHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSHAK 496

Query: 674 EPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVHFKKLVEN 853
           E L+L+HTD+WGPAPI+SS+G  YYV FIDD +RF WIY LK KSDT  AF+ FK +VEN
Sbjct: 497 EILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVEN 556

Query: 854 QFNKKIKVIRSDGGTEYKPLTK 919
           QF+KKIK I+ DGG EYKP+ K
Sbjct: 557 QFSKKIKTIQCDGGGEYKPVQK 578



 Score = 67.4 bits (163), Expect = 1e-08
 Identities = 35/104 (33%), Positives = 58/104 (55%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWY 189
           CQ+CG  NH A  C+ RF  D T + ++ S  +  +G+ N     A +A+ +   + +WY
Sbjct: 268 CQVCGLDNHIAIDCFYRF--DKTYSRSNHSANNDKQGSHN-----AFLASQNSIEDYDWY 320

Query: 190 PDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGSS 321
            DSGA++H+T+        ++++G   L +GNG  L+I   GSS
Sbjct: 321 FDSGASNHVTHQTDKFQNLSEHHGKNSLIVGNGEKLEIVATGSS 364


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score =  132 bits (333), Expect(2) = 2e-40
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 3/204 (1%)
 Frame = +2

Query: 302 FHMLDQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKP--QVRNISSFF 475
           F + D+ TK  L +G L+NGLY+F           P F +K      KP   + N S+F 
Sbjct: 241 FFVKDRHTKMVLAQGKLENGLYKF-----------PMFSNK------KPYSSINNASAFH 283

Query: 476 SYVASPMKS-LELWHKRLGHPSYDVTKKALVASDIPFVNENSNKFCSHCVQAKAHKLPFP 652
           S+  S +++  ELWH RLGH + D+  K +   ++      S   C  C  AK+H+LP  
Sbjct: 284 SHFXSTVENKAELWHNRLGHAASDIVSKVMNTCNVASRKYKST-VCFDCQLAKSHRLPTQ 342

Query: 653 VSSDFSNEPLQLIHTDLWGPAPIVSSNGHNYYVTFIDDHSRFVWIYFLKSKSDTFTAFVH 832
           +S+  + + L+L++TD+WGPA + S+    Y++ F+DD+SR+ W Y L++K      F  
Sbjct: 343 LSNFHAFKSLELVYTDIWGPASVKSTFEAKYFILFVDDYSRYTWFYSLQTKDQXLPIFKR 402

Query: 833 FKKLVENQFNKKIKVIRSDGGTEY 904
           FK  +ENQF+ KIK ++ D G E+
Sbjct: 403 FKLQMENQFDTKIKCLQXDNGGEF 426



 Score = 62.8 bits (151), Expect(2) = 2e-40
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 10  CQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQG-SEVNW 186
           CQ+CG   HTA  CY+ F+  F       S  S   GN+N     AM+A++    ++ +W
Sbjct: 139 CQLCGKFGHTAQICYHXFDISFQGGQTITSP-SLNNGNQN--NIXAMVASSSNSPADESW 195

Query: 187 YPDSGATHHITNDFSNLNFAADYNGHGKLQIGN 285
           Y D GA+HH+T +  N    + Y G  ++ IGN
Sbjct: 196 YLDFGASHHLTQNLGNXTSTSPYTGTDRVTIGN 228