BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00036250
         (562 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011073037.1| uncharacterized protein LOC105158097 [Sesamu...   124   3e-30
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]    91   4e-18
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...    87   3e-16
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...    87   3e-16
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    87   3e-16
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...    86   3e-16
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           86   3e-16
gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposo...    84   1e-15
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro...    85   1e-15
gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposo...    84   1e-15
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                         84   2e-15
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]          82   2e-15
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...    84   3e-15
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo...    82   6e-15
gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]    82   1e-14
gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]      82   1e-14
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...    81   2e-14
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]      81   2e-14
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]          81   3e-14
emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]          81   3e-14

>ref|XP_011073037.1| uncharacterized protein LOC105158097 [Sesamum indicum]
          Length = 472

 Score =  124 bits (312), Expect = 3e-30
 Identities = 81/192 (42%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQ-----NFIXXXXXXXXXXXX 166
           ELDLKVNK   Q+  E+  VRGR+  RFGN     N +++     N              
Sbjct: 179 ELDLKVNKPS-QSHYEINSVRGRT--RFGNFNSRYNSRSRSKTKTNRSKSRPRETNLRDD 235

Query: 167 XXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPI 346
                 CYNCG  GHYI+DC   +     +N  + +     S E+ G+VF+V        
Sbjct: 236 KIRDRRCYNCGTKGHYIKDCRKPRRENRDRNYDDKEKVSNVSIESNGEVFVVYE------ 289

Query: 347 VNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICL 526
            NSV +  +  +EWLIDS CTFHMSPFK++F+N K     FVSMANEKKC + G+GDI L
Sbjct: 290 ANSVSTFDM--HEWLIDSGCTFHMSPFKDIFTNLKYEHAGFVSMANEKKCEIKGLGDISL 347

Query: 527 KFDSGYAYTLKN 562
            FD GY   LKN
Sbjct: 348 CFD-GYKMLLKN 358


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 53/187 (28%), Positives = 88/187 (47%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXX 181
           EL   V K  + +SGE +  RGR++ +   ++     +++                    
Sbjct: 137 ELKKMVFKSRKYDSGEGLVARGRTRKKNNGRRGRSRSKSRG-----------------NN 179

Query: 182 XCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVH 361
            C+ C + GHY+++ P +KG +N +N ++  A  A  + N  DV +V       + NS  
Sbjct: 180 KCFKCKKEGHYVKNXPDRKGKENKRNYNSGDATFAKENSNTTDVLLVX------VTNS-- 231

Query: 362 SSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 541
                ++EW++DS C++HMSP  + FS Y+ +    V M N+  C V GI  I +K   G
Sbjct: 232 -----DDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHXIQIKMHGG 286

Query: 542 YAYTLKN 562
              TL N
Sbjct: 287 IIRTLTN 293


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 86.7 bits (213), Expect = 3e-16
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
 Frame = +2

Query: 20  NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 199
           N G   + GE +HVRGR+++R  N++  D                          C  C 
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236

Query: 200 EVGHYIRDCPS--KKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSV 373
              H I +C     K  +N K+     A+ A+S +++GD  +V   C             
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---------- 286

Query: 374 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 550
             +EW++DSAC+FH+   +N FS+YK V K   V M ++  C + GIG + +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 551 TLKN 562
           TLKN
Sbjct: 346 TLKN 349


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 86.7 bits (213), Expect = 3e-16
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
 Frame = +2

Query: 20  NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 199
           N G   + GE +HVRGR+++R  N++  D                          C  C 
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236

Query: 200 EVGHYIRDCPS--KKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSV 373
              H I +C     K  +N K+     A+ A+S +++GD  +V   C             
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---------- 286

Query: 374 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 550
             +EW++DSAC+FH+   +N FS+YK V K   V M ++  C + GIG + +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 551 TLKN 562
           TLKN
Sbjct: 346 TLKN 349


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1373

 Score = 86.7 bits (213), Expect = 3e-16
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
 Frame = +2

Query: 20  NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 199
           N G   + GE +HVRGR+++R  N++  D                          C  C 
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236

Query: 200 EVGHYIRDCPS--KKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSV 373
              H I +C     K  +N K+     A+ A+S +++GD  +V   C             
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---------- 286

Query: 374 CENEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 550
             +EW++DSAC+FH+   +N FS+YK V K   V M ++  C + GIG + +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 551 TLKN 562
           TLKN
Sbjct: 346 TLKN 349


>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 365

 Score = 85.5 bits (210), Expect = 3e-16
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
 Frame = +2

Query: 32  RQNSGEVMHV-----RGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNC 196
           +Q++GE + V     RGRS+++FGNQ +  +   +N                    CY C
Sbjct: 76  KQSTGESLTVKTSQDRGRSKNKFGNQYRYRSISKEN-----------------DNRCYYC 118

Query: 197 GEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVC 376
            + GH+ RDCP KK  Q  + +S ++A++AS  E   +      +C    ++S  S    
Sbjct: 119 KKEGHWKRDCP-KKSKQQQQKKSGEEASVASRLEKDSET-----LCTFSCMDSSDS---- 168

Query: 377 ENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 556
              W++DS C++HM PF++ FS Y       V M N  +C   GIG I +K   G   TL
Sbjct: 169 ---WILDSDCSYHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMFDGVIRTL 225


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 86.3 bits (212), Expect = 3e-16
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
 Frame = +2

Query: 23  KGGRQNSGEVMHV-----RGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXC 187
           +GG Q  GE ++V     RGR++ + G+ +K    +N+                     C
Sbjct: 119 EGGSQ--GEGLYVQGCSDRGRNKGKAGSGKKRSKSKNRK-----------------TSEC 159

Query: 188 YNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENA--GDVFMVTGICDVPIVNSVH 361
           Y+C ++GH+ RDCP      N K  S+  ANL  + ++   GD+  V             
Sbjct: 160 YSCKQIGHWKRDCP------NIKQGSSTSANLVHTDDSCSEGDILCV------------- 200

Query: 362 SSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 541
           SSS C + W++DS C++HM+P +  F+ ++     FV + ++K C + GIG I +  D G
Sbjct: 201 SSSKCTDAWILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITGIGQIKIAMDDG 260

Query: 542 YAYTLKN 562
              TL N
Sbjct: 261 GVRTLTN 267


>gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 341

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 48/176 (27%), Positives = 86/176 (48%)
 Frame = +2

Query: 29  GRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCGEVG 208
           G  +SGE + VRGR   R   Q++    +++N                    C+NC + G
Sbjct: 190 GGTSSGEGLMVRGRMDERKSFQRRRSKSRSKN---------------KNNNKCHNCQKEG 234

Query: 209 HYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEW 388
           H+ R+CP  K ++   ++    A ++  S+    +F+              SS+V +++W
Sbjct: 235 HWKRNCPELKKDKVSTSEFGGAAVVSEESDGGNVLFV--------------SSNVNDDDW 280

Query: 389 LIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 556
           ++DSACTFHM+P ++ F+ ++ V    V M N+  C++ G G + +K + G   TL
Sbjct: 281 ILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGACSIAGKGTVQIKMNDGIVRTL 336


>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
          Length = 1309

 Score = 84.7 bits (208), Expect = 1e-15
 Identities = 47/181 (25%), Positives = 84/181 (46%)
 Frame = +2

Query: 14  KVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYN 193
           K N+   +++GE ++VRGR+  R    +K   H++Q+                    C+ 
Sbjct: 185 KKNETKMESTGEGLNVRGRTYKRESRNEKGGKHRSQS-------------RTRGKLKCFV 231

Query: 194 CGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSV 373
           C + GH+ +DCP ++     + +    A + S    + +V +V             S + 
Sbjct: 232 CHKEGHFKKDCPDRRARNPERRKDPGDAAVVSDGYESAEVLVV-------------SRTN 278

Query: 374 CENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 553
            ++ W++DS C+FHM P K+ F N  E ++  V + N ++C V GIG + LK   G   T
Sbjct: 279 KQDCWVMDSGCSFHMCPIKSWFQNLVEEESGHVLLGNNRECKVMGIGSVLLKMHDGCVRT 338

Query: 554 L 556
           +
Sbjct: 339 I 339


>gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 344

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 48/176 (27%), Positives = 86/176 (48%)
 Frame = +2

Query: 29  GRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCGEVG 208
           G  +SGE + VRGR   R   Q++    +++N                    C+NC + G
Sbjct: 193 GGTSSGEGLMVRGRMDERKSFQRRRSKSRSKN---------------KNNNKCHNCQKEG 237

Query: 209 HYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEW 388
           H+ R+CP  K ++   ++    A ++  S+    +F+              SS+V +++W
Sbjct: 238 HWKRNCPELKKDKVSTSEFGGAAVVSEESDGGNVLFV--------------SSNVNDDDW 283

Query: 389 LIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 556
           ++DSACTFHM+P ++ F+ ++ V    V M N+  C++ G G + +K + G   TL
Sbjct: 284 ILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGACSIAGKGTVQIKMNDGIVRTL 339


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score = 84.3 bits (207), Expect = 2e-15
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
 Frame = +2

Query: 20  NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 199
           N G   + GE +HVRGR++++  N++  D                          C  C 
Sbjct: 190 NDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 238

Query: 200 EVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCE 379
              H I +C   +  +  KN+ + + ++AS++ +  D    +G C V     V       
Sbjct: 239 LKNHNIDECKKVQAKER-KNKKDGKVSVASAAVSDDD----SGDCLVVFAGCVAG----H 289

Query: 380 NEWLIDSACTFHMSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 556
           +EW++DSAC+FH+   +N FS+YK V K   V M ++  C + GIG + +K D G   TL
Sbjct: 290 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 349

Query: 557 KN 562
           KN
Sbjct: 350 KN 351


>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 51/173 (29%), Positives = 81/173 (46%)
 Frame = +2

Query: 23  KGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCGE 202
           +G  +N+GE +  RGRS+       K DN   +N                    C++C +
Sbjct: 98  EGKEENTGEGLMARGRSE-------KCDNKAPRN---------ESRSKSKGRLKCFHCHK 141

Query: 203 VGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCEN 382
            GH+ RDCP +K   + K +   +A++AS   ++ +V +VT             SS    
Sbjct: 142 EGHFKRDCPDRKKKVHEKPKDPGEASVASDGYDSAEVLVVTD----------EDSS---K 188

Query: 383 EWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 541
           EW++DS C+FHM P K+ F N ++     V + N K C V GIG + ++   G
Sbjct: 189 EWIMDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKPCKVAGIGSVRIRMFDG 241


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score = 83.6 bits (205), Expect = 3e-15
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 1/177 (0%)
 Frame = +2

Query: 35  QNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCGEVGHY 214
           ++ GE + VRGR+Q +     K    +++                     C  C + GH 
Sbjct: 194 EDKGEGLSVRGRTQEKGSTSNKKSRSKSRG--------------RKSNKTCRYCKKFGHD 239

Query: 215 IRDCPSKKGNQNFKNQSNDQANLAS-SSENAGDVFMVTGICDVPIVNSVHSSSVCENEWL 391
           I DC   K  Q  + +  + A  A+  +++ GDV +           SV S    + EW+
Sbjct: 240 ISDCFILKKKQERQEKGKNPAEAANVETDSDGDVMI-----------SVSSDKRSKTEWI 288

Query: 392 IDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKN 562
           +DS CTFHM P+K+LF+  + V +  V M N+ +C + GIG I +K   G   TL N
Sbjct: 289 LDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSN 345


>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 337

 Score = 81.6 bits (200), Expect = 6e-15
 Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
 Frame = +2

Query: 185 CYNCGEVGHYIRDCPSKKGNQNFK-NQSNDQANLASSSENAGDVFMVTGICDVPIVNSVH 361
           CY C + GH+ ++CP +K   N K N  +D A +A   E+A  + + T           H
Sbjct: 227 CYYCKKEGHFRKECPERKKKNNGKYNDESDIAVVADGYESAEVLSIST---------KKH 277

Query: 362 SSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 541
           S      EW++DS C+FHM+P    FS+YKE+    V M N   CNV GIG I LK   G
Sbjct: 278 SE-----EWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGTIKLKVQDG 332

Query: 542 Y 544
           +
Sbjct: 333 F 333


>gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]
          Length = 448

 Score = 81.6 bits (200), Expect = 1e-14
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
 Frame = +2

Query: 185 CYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSS----ENAGDVFMVTGICDVPIVN 352
           CY C + GH   +CP  +     K   +  ++ A +S    E  G +F+VT         
Sbjct: 41  CYYCHKKGHIKFNCPKLQNKGKVKKNEHGDSDTAEASVAADEIEGAIFLVT--------- 91

Query: 353 SVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKF 532
              + S   NEW++DSAC+FHM P K+LFS Y  V+   + + N   C + G G + +K 
Sbjct: 92  --ENISCSNNEWILDSACSFHMCPNKDLFSTYDPVEGGVILVGNNVACKIVGTGTVRIKM 149

Query: 533 DSGYAYTLKN 562
             G   TLKN
Sbjct: 150 HDGIVRTLKN 159


>gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1433

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMH---------VRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXX 154
           E D      G Q+S  V+H          + +    F  Q+K +N+ NQ+          
Sbjct: 189 EKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD---------- 238

Query: 155 XXXXXXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGIC 334
                     C+ CG+VGH  R CP +KG +    Q++  AN+   +   G     +G  
Sbjct: 239 -------ERTCFVCGQVGHLARKCPQRKGMKALAGQTSKSANVTIGNTGDG-----SGYG 286

Query: 335 DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 514
           ++P V SV+ S+     W +D+    H+    +LFS+Y+  + S V M N    +V G+G
Sbjct: 287 NLPTVFSVNQST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342

Query: 515 DICLKFDSGYAYTLKN 562
            + LKF SG    LKN
Sbjct: 343 TVDLKFTSGKIVQLKN 358


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1302

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMH---------VRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXX 154
           E D+     G Q+S  V+H          + +    F  Q+K +N+ NQ+          
Sbjct: 189 EKDVASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD---------- 238

Query: 155 XXXXXXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGIC 334
                     C+ CG+VGH  R CP +KG +    Q++  AN+   +   G     +G  
Sbjct: 239 -------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDG-----SGYG 286

Query: 335 DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 514
           ++P V SV+ S+     W +D+    H+    +LFS+Y+  + S V M N    +V G+G
Sbjct: 287 NLPTVFSVNQST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342

Query: 515 DICLKFDSGYAYTLKN 562
            + LKF SG    LKN
Sbjct: 343 TVDLKFTSGKIVQLKN 358


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
 Frame = +2

Query: 2    ELDLKVNKGGRQNSGEVMH---------VRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXX 154
            E D      G Q+S  V+H          + +    F  Q+K +N+ NQ+          
Sbjct: 603  EKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD---------- 652

Query: 155  XXXXXXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGIC 334
                      C+ CG+VGH  R CP +KG +    Q++  AN+   +   G     +G  
Sbjct: 653  -------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDG-----SGYG 700

Query: 335  DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 514
            ++P V SV+ S+     W ID+    H+    +LFS+Y+  + S V M N    +V G+G
Sbjct: 701  NLPTVFSVNQST----NWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 756

Query: 515  DICLKFDSGYAYTLKN 562
             + LKF SG    LKN
Sbjct: 757  TVDLKFTSGKIVQLKN 772


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
          Length = 1342

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMH---------VRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXX 154
           E D      G Q+S  V+H          + +    F  Q+K +N+ NQ+          
Sbjct: 189 EKDAASKSDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD---------- 238

Query: 155 XXXXXXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGIC 334
                     C+ CG+VGH  R CP +KG +    Q++  AN+   +   G     +G  
Sbjct: 239 -------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDG-----SGYG 286

Query: 335 DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 514
           ++P V SV+ S+     W +D+    H+    +LFS+Y+  + S V M N    +V G+G
Sbjct: 287 NLPTVFSVNQST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGLG 342

Query: 515 DICLKFDSGYAYTLKN 562
            + LKF SG    LKN
Sbjct: 343 TVDLKFTSGKIVQLKN 358


>emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]
          Length = 1356

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
 Frame = +2

Query: 2   ELDLKVNKGGRQNSGEVMH---------VRGRSQHRFGNQQKPDNHQNQNFIXXXXXXXX 154
           E D      G Q+S  V+H          + +    F  Q+K +N+ NQ+          
Sbjct: 189 EKDAASKSDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD---------- 238

Query: 155 XXXXXXXXXXCYNCGEVGHYIRDCPSKKGNQNFKNQSNDQANLASSSENAGDVFMVTGIC 334
                     C+ CG+VGH  R CP +KG +    Q++  AN+   +   G     +G  
Sbjct: 239 -------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDG-----SGYG 286

Query: 335 DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 514
           ++P V SV+ S+     W +D+    H+    +LFS+Y+  + S V M N    +V G+G
Sbjct: 287 NLPTVFSVNQST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGLG 342

Query: 515 DICLKFDSGYAYTLKN 562
            + LKF SG    LKN
Sbjct: 343 TVDLKFTSGKIVQLKN 358