BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00035833
         (1073 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX72264.1| ribonuclease H [Trifolium pratense]                    271   2e-80
emb|CDP14470.1| unnamed protein product [Coffea canephora]            262   2e-78
gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]           267   3e-78
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           266   6e-78
gb|PNX98065.1| ribonuclease H [Trifolium pratense]                    267   1e-77
gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]           267   2e-77
gb|PNX71533.1| ribonuclease H [Trifolium pratense]                    262   3e-77
gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium prat...   256   4e-77
gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]           262   9e-76
ref|XP_024172304.1| uncharacterized protein LOC112178381 [Rosa c...   262   5e-75
gb|KYP76107.1| Putative ribonuclease H protein At1g65750 [Cajanu...   253   8e-75
dbj|GAU42618.1| hypothetical protein TSUD_238110 [Trifolium subt...   251   8e-75
ref|XP_024156142.1| uncharacterized protein LOC112164137 [Rosa c...   261   8e-75
ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279...   261   2e-74
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   261   2e-74
dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subt...   260   3e-74
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   260   3e-74
gb|PNY14301.1| ribonuclease H [Trifolium pratense]                    258   7e-74
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   259   7e-74
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   259   7e-74

>gb|PNX72264.1| ribonuclease H [Trifolium pratense]
          Length = 854

 Score =  271 bits (694), Expect = 2e-80
 Identities = 132/351 (37%), Positives = 209/351 (59%)
 Frame = +3

Query: 21   ERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKE 200
            ++  IC ++     +   ++LG PI  GR+KK VF +V++   ++V  WK  FLS AGKE
Sbjct: 218  DKDMICNMMGAKAVEAHSRYLGFPIPFGRSKKAVFSFVMDRVWKKVKGWKERFLSRAGKE 277

Query: 201  VLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKE 380
             LI +V  A+PNYI+SCYK+P G C D D +L++FWWG  EE R K+HW+ W  L+K K 
Sbjct: 278  TLIKAVAQAIPNYILSCYKMPVGCCKDIDSMLAKFWWGSNEE-RRKIHWMSWERLSKAKL 336

Query: 381  IGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWK 560
             GG+GF  +  FN ALL K  WR++T  + ++ K+LK+RY+P G  L +      S+ W+
Sbjct: 337  DGGMGFRGMEDFNKALLGKHCWRLVTGESSLLEKVLKSRYYPRGNFLCAKEGYQPSYGWR 396

Query: 561  SFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGG 740
            S L ++ ++ +G  +++ +G ++R W+  W+++       G      E   VS+LI    
Sbjct: 397  SILSARDLVTKGGVWKIGNGSNVRIWKDTWMADLKCIESRGPNCPLPEDALVSDLIDVDT 456

Query: 741  KVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQV 920
            K W R+++   FN Q ++ I++ P+  +  +D L W    DG +SV+SAY  LCD K ++
Sbjct: 457  KQWKRDMIFSCFNRQVAQTIISIPLSFRLPQDTLIWNWEKDGEYSVRSAYHLLCDEKARL 516

Query: 921  QDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
            Q    G  C +R  K+W+++W   + NK+K+FLWR    ILP ++ L  +G
Sbjct: 517  Q---PGPSCPRR-SKLWKEIWRAPVPNKVKNFLWRLAKNILPTRTNLHNKG 563


>emb|CDP14470.1| unnamed protein product [Coffea canephora]
          Length = 660

 Score =  262 bits (670), Expect = 2e-78
 Identities = 129/360 (35%), Positives = 206/360 (57%), Gaps = 10/360 (2%)
 Frame = +3

Query: 21   ERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKE 200
            +R+++C  L GM E  + K+LGLP+ I R K+++F ++ E  KR++ +W+   LS AGKE
Sbjct: 27   QRQDVCSALGGMTEMTQGKYLGLPMVISRTKEQIFGFIKENIKRKMHDWRNKLLSTAGKE 86

Query: 201  VLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKE 380
            V++ +V  A+P Y MS +KLP+ +C D   +++ +WWG    G++KLHW+ W  ++  + 
Sbjct: 87   VMLKAVSMAMPTYAMSVFKLPRKLCKDISALMANYWWGEAN-GKNKLHWLSWRKMSLSRN 145

Query: 381  IGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWK 560
             GGLGF D+  +N ALL KQ+WRI+T+PNL++ K+L+ARYFP   +L   PK   SW+W+
Sbjct: 146  AGGLGFKDIEAYNKALLGKQVWRILTKPNLLISKVLRARYFPKDSILTCRPKQNASWIWQ 205

Query: 561  SFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGG 740
              L ++ V+ +G+  ++ +G+S   W   WI    S  PT        +  V+ELI    
Sbjct: 206  GLLGARRVVEKGVIRRIGNGRSTSIWGHRWIPGSSSGRPTSLGPQSYNLKMVNELISH-- 263

Query: 741  KVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQV 920
              W R  + + FN  ++  IL  P+     +D   W   P G ++V S Y  +   +T V
Sbjct: 264  HRWKRNTIFQHFNQSDAEKILNIPLSLMGREDNYYWQHNPGGIYTVSSGYKCIMKERTNV 323

Query: 921  QDCC----------EGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERR 1070
            +             E  Q R    +MW  +W L IK+K+K F+W+CI G LPV++ + R+
Sbjct: 324  KQIAPEEAGPSITGEDQQSR----QMWTTLWKLNIKHKVKIFIWKCITGALPVRAAIFRK 379


>gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]
          Length = 916

 Score =  267 bits (682), Expect = 3e-78
 Identities = 126/333 (37%), Positives = 196/333 (58%)
 Frame = +3

Query: 75   KHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIMSCY 254
            K+LG+P+ +GR+KK++F ++ E   +++  WK   LS AG+  LI +V  A+P Y+MS +
Sbjct: 392  KYLGMPVALGRSKKQIFNFIQEKIWKKLKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSF 451

Query: 255  KLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDALLA 434
             LPKGVCD  ++++  FWWG   + R K+HWI+WS + K K  GG+GF D+R FN+ALLA
Sbjct: 452  LLPKGVCDQLEKMICNFWWGSSTDHR-KIHWIKWSTVCKHKMEGGIGFRDLRAFNEALLA 510

Query: 435  KQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKSFLKSKYVLYEGMRFQVV 614
            KQ WR+ITQP+ +V K+LKA+Y+P G  L +S K   S+ WKS L++ +V+  G  + + 
Sbjct: 511  KQGWRLITQPDSLVAKILKAKYYPKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIG 570

Query: 615  DGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQESR 794
             G+ I  WE  WI    +P  T        +  V EL+ D    WN  +++++FN  E+ 
Sbjct: 571  SGQGINIWEDNWIQQKGNPTSTISKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAH 630

Query: 795  AILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQVQDCCEGSQCRKRDGKMWR 974
             I   PI  +   D L W  T DG++SVKS Y  + +      +    +       ++W+
Sbjct: 631  MIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDN--NNATSSNSSMEIWK 688

Query: 975  KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             +W L +  K  HF+WRC+   +PV+  L ++G
Sbjct: 689  VLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKG 721


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  266 bits (679), Expect = 6e-78
 Identities = 140/361 (38%), Positives = 206/361 (57%), Gaps = 5/361 (1%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            N   +E+  IC  ++        K+LGLP+  GR+KKE+F  V E   +++  WK   LS
Sbjct: 322  NLPTIEKNMICNKIDVKAVTNHSKYLGLPVIFGRSKKEIFASVQERIWKKIKGWKEKCLS 381

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE LI SV  A+PNYIMSCYKLP G CD+ + +L++FWWG  E+ R K+HW+ W+ L
Sbjct: 382  RAGKETLIKSVAQAIPNYIMSCYKLPTGCCDNIEAMLAKFWWGTTEKQR-KIHWVSWNKL 440

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
             K K  GGLGF     FN ALL KQ WR++  P+ ++ K+ K+RYFP    ++++     
Sbjct: 441  GKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFKSRYFPRSKFMDANVGYQP 500

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWIS-----NFYSPIPTGQVGARSEIT 710
            S+ W+S   S+ V+  G R+ + +GK +  W   W+        +SP+      A     
Sbjct: 501  SYAWRSLCNSREVIDVGARWLIGNGKDVHIWNDKWLPAQDKFKVWSPVSNLAPNA----- 555

Query: 711  WVSELIQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY 890
             VS+LI    K+W++ LV   FN  E+  IL  P+  +   D+L W    +G FSV+SAY
Sbjct: 556  MVSDLINLETKMWDKNLVQNCFNSFEAEQILNIPLSWRLPADKLIWHWEKNGEFSVRSAY 615

Query: 891  LRLCDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERR 1070
              L  S+ + Q+  E S    RD  +W+ +W +K+ N +K+FLWR    ILP +S LE++
Sbjct: 616  HML--SEIRNQNSPEASS--SRDHLLWKAIWKVKVPNCIKNFLWRLAKAILPTRSRLEKK 671

Query: 1071 G 1073
            G
Sbjct: 672  G 672


>gb|PNX98065.1| ribonuclease H [Trifolium pratense]
          Length = 1011

 Score =  267 bits (682), Expect = 1e-77
 Identities = 126/333 (37%), Positives = 196/333 (58%)
 Frame = +3

Query: 75   KHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIMSCY 254
            K+LG+P+ +GR+KK++F ++ E   +++  WK   LS AG+  LI +V  A+P Y+MS +
Sbjct: 392  KYLGMPVALGRSKKQIFNFIQEKIWKKLKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSF 451

Query: 255  KLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDALLA 434
             LPKGVCD  ++++  FWWG   + R K+HWI+WS + K K  GG+GF D+R FN+ALLA
Sbjct: 452  LLPKGVCDQLEKMICNFWWGSSTDHR-KIHWIKWSTVCKHKMEGGIGFRDLRAFNEALLA 510

Query: 435  KQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKSFLKSKYVLYEGMRFQVV 614
            KQ WR+ITQP+ +V K+LKA+Y+P G  L +S K   S+ WKS L++ +V+  G  + + 
Sbjct: 511  KQGWRLITQPDSLVAKILKAKYYPKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIG 570

Query: 615  DGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQESR 794
             G+ I  WE  WI    +P  T        +  V EL+ D    WN  +++++FN  E+ 
Sbjct: 571  SGQGINIWEDNWIQQKGNPTSTISKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAH 630

Query: 795  AILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQVQDCCEGSQCRKRDGKMWR 974
             I   PI  +   D L W  T DG++SVKS Y  + +      +    +       ++W+
Sbjct: 631  MIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDN--NNATSSNSSMEIWK 688

Query: 975  KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             +W L +  K  HF+WRC+   +PV+  L ++G
Sbjct: 689  VLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKG 721


>gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1070

 Score =  267 bits (682), Expect = 2e-77
 Identities = 126/333 (37%), Positives = 196/333 (58%)
 Frame = +3

Query: 75   KHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIMSCY 254
            K+LG+P+ +GR+KK++F ++ E   +++  WK   LS AG+  LI +V  A+P Y+MS +
Sbjct: 546  KYLGMPVALGRSKKQIFNFIQEKIWKKLKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSF 605

Query: 255  KLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDALLA 434
             LPKGVCD  ++++  FWWG   + R K+HWI+WS + K K  GG+GF D+R FN+ALLA
Sbjct: 606  LLPKGVCDQLEKMICNFWWGSSTDHR-KIHWIKWSTVCKHKMEGGIGFRDLRAFNEALLA 664

Query: 435  KQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKSFLKSKYVLYEGMRFQVV 614
            KQ WR+ITQP+ +V K+LKA+Y+P G  L +S K   S+ WKS L++ +V+  G  + + 
Sbjct: 665  KQGWRLITQPDSLVAKILKAKYYPKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIG 724

Query: 615  DGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQESR 794
             G+ I  WE  WI    +P  T        +  V EL+ D    WN  +++++FN  E+ 
Sbjct: 725  SGQGINIWEDNWIQQKGNPTSTISKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAH 784

Query: 795  AILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQVQDCCEGSQCRKRDGKMWR 974
             I   PI  +   D L W  T DG++SVKS Y  + +      +    +       ++W+
Sbjct: 785  MIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDN--NNATSSNSSMEIWK 842

Query: 975  KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             +W L +  K  HF+WRC+   +PV+  L ++G
Sbjct: 843  VLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKG 875


>gb|PNX71533.1| ribonuclease H [Trifolium pratense]
          Length = 798

 Score =  262 bits (670), Expect = 3e-77
 Identities = 127/351 (36%), Positives = 207/351 (58%)
 Frame = +3

Query: 21   ERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKE 200
            ++  IC ++     + + ++LG PI  GR+KK VF +V++   ++V  WK  FLS AGKE
Sbjct: 161  DKDMICNMMGAKAVEAQSRYLGFPIPFGRSKKVVFSFVMDRVWKKVKGWKERFLSRAGKE 220

Query: 201  VLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKE 380
             LI +V  A+PNYI+SCYK+P G C D D +L++FWWG  +E R K+HW+ W  L+K K 
Sbjct: 221  TLIKAVAQAIPNYILSCYKMPVGCCKDIDSMLAKFWWGSKDESR-KIHWMSWQKLSKAKL 279

Query: 381  IGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWK 560
             GG+GF  +  FN ALL KQ WR++T  + ++ K+ K++Y+P G  +++      S+ W+
Sbjct: 280  DGGMGFRGMEDFNKALLGKQCWRLVTGESSLLEKIFKSKYYPNGNFMSAKEGYQPSYGWR 339

Query: 561  SFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGG 740
            S L ++ ++ +G  +++ +G+ ++ W+  W+ +       G      E   V+ELI    
Sbjct: 340  SILSARDLVDKGGLWKIGNGRKVKIWKDRWLPDLKVIEFKGVNCPLPEDACVAELIDVDT 399

Query: 741  KVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQV 920
            K W R+L+   F+   ++ I+  P+  +   D L W    DG +SV+SAY  LCD K + 
Sbjct: 400  KQWKRDLIFSCFDRLVAKQIINIPLSFRLPHDLLIWNWEKDGEYSVRSAYHLLCDEKARF 459

Query: 921  QDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
            Q    G  C +R  K+W+++W   + NK+K+F+WR    ILP +S L ++G
Sbjct: 460  Q---PGPSCPQR-SKLWKEIWRAPVPNKIKNFMWRLAKNILPTRSNLHKKG 506


>gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium pratense]
          Length = 548

 Score =  256 bits (654), Expect = 4e-77
 Identities = 126/356 (35%), Positives = 198/356 (55%), Gaps = 11/356 (3%)
 Frame = +3

Query: 39   GVLNGMQEQKK-----------IKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            GV NG++E+              K+LG+PI  GR+K+++F Y+ E   +++  WK   LS
Sbjct: 6    GVTNGIKEEISRILPMQISEYFSKYLGMPIVHGRSKQQIFNYIREKIWKKLKGWKEKNLS 65

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AG+  LI +V  A+P Y+MSC+ +PKGVC+  ++++  FWWG   + R K+HW++WS +
Sbjct: 66   FAGRGTLIKAVAQAIPTYLMSCFLIPKGVCEQLEKMICNFWWGSTTDQR-KMHWLKWSKV 124

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
               K  GGLGF D+R FN+ALLAKQ WR+IT+P  +V ++LKA+YFP    LN+  K   
Sbjct: 125  CNQKRNGGLGFRDLRAFNEALLAKQGWRLITKPTSLVAQVLKAKYFPNESFLNAKHKQVM 184

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S +++ +V+  G  + + DG+ I  WE  W+    +            +  V EL
Sbjct: 185  SYTWRSIMQASWVIKRGSYWSIGDGEDINIWEDNWMQQKSATYKGRPKPNNLNLIKVKEL 244

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCD 905
            +      WN ++++++F   E++ IL  PI  +   D L W  T DG +SVKS Y  + +
Sbjct: 245  MDSNYNEWNTDIINQVFLPYEAQMILNIPIIDKTQPDMLTWDCTQDGQYSVKSGYHAIME 304

Query: 906  SKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
                       +        +W  +W LK+  K  H LWR +H  LPV++ L +RG
Sbjct: 305  WGN-----LPNASPSNNSQHIWNVLWKLKVPPKHSHLLWRVLHNALPVKNNLFKRG 355


>gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1066

 Score =  262 bits (670), Expect = 9e-76
 Identities = 125/351 (35%), Positives = 204/351 (58%), Gaps = 1/351 (0%)
 Frame = +3

Query: 24   RKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEV 203
            ++++  +L    + +  K+LG+PI +GR+KK++F ++ E   +++  WK   LS AG+  
Sbjct: 640  KQDVSNILPMQIQNQFSKYLGMPIALGRSKKQIFNFIQEKIWKKLKGWKEKHLSFAGRGT 699

Query: 204  LINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEI 383
            LI +V  A+P Y+MS + +PKGVCD  ++++  FWWG   + R K+HWI+WS +   K+ 
Sbjct: 700  LIKAVAQAIPTYLMSSFLMPKGVCDQLEQMICNFWWGSSTDHR-KIHWIKWSKVCTQKKQ 758

Query: 384  GGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKS 563
            GG+GF ++R FN+ALLAKQ WR+ITQPN +V ++LKA+Y+P G  L ++ K   S+ W+S
Sbjct: 759  GGMGFRNLRAFNEALLAKQGWRLITQPNSLVTQILKAKYYPKGDFLTATHKQNMSYTWRS 818

Query: 564  FLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGK 743
             L++ +V+ +G  + +  G+ I  WE  WI    +   T         T V EL+ +   
Sbjct: 819  ILQASWVIKKGSYWTIGSGQDINIWEDNWIQQKGNSTGTSSKPNNCGFTKVKELMDNNYN 878

Query: 744  VWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCD-SKTQV 920
             WN  +++++FN  E+  IL  PI  +   D L W  T DG +SVKS Y  + D +    
Sbjct: 879  EWNASIINQVFNPYEAHMILQIPILDKTQPDTLTWDGTRDGTYSVKSGYHAIIDWANNSN 938

Query: 921  QDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             +    S C     ++W+ +W L +  K  H +WR +   +PV+  L +RG
Sbjct: 939  SNNATSSNCSM---EIWKVLWKLNVPPKHSHLIWRSLRNAIPVKGSLFKRG 986


>ref|XP_024172304.1| uncharacterized protein LOC112178381 [Rosa chinensis]
          Length = 1602

 Score =  262 bits (670), Expect = 5e-75
 Identities = 132/336 (39%), Positives = 197/336 (58%), Gaps = 1/336 (0%)
 Frame = +3

Query: 66   KKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIM 245
            K  K+LGLP  +  +K E F++++E  + ++ NWK   LS+AGKEV+I SV+ ++P Y+M
Sbjct: 763  KHDKYLGLPTEVSYSKTEAFQFIMEKTRNKMKNWKDKTLSVAGKEVMIKSVVQSVPTYVM 822

Query: 246  SCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDA 425
            SC++LPK +C +  R +++FWWG  E+GR K+HW+ W  +  PKE GGLGF ++  FN A
Sbjct: 823  SCFELPKHLCQEMHRCMAEFWWGDSEKGR-KIHWLAWDKMCVPKEKGGLGFRNMEYFNQA 881

Query: 426  LLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKSFLKSKYVLYEGMRF 605
            LLAKQ WRI+  P+ ++ K LKA+YFP    +++S    DS+ W+S +K K +L +G+RF
Sbjct: 882  LLAKQGWRILRHPDSLLGKTLKAKYFPNNDFIHASVNQGDSYTWRSLMKGKVLLEKGLRF 941

Query: 606  QVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQ 785
            QV  G  I  W  PWI   YS  P   V    E   V++LI    K W  + +  LF   
Sbjct: 942  QVGSGTRISVWFDPWIPRPYSFRPYSTVMEGLEDLTVADLIDPDSKDWMVDWLEELFFAD 1001

Query: 786  ESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY-LRLCDSKTQVQDCCEGSQCRKRDG 962
            E   I   P+  +  +DRL W     G +SVKS Y +  C +          SQ    D 
Sbjct: 1002 EVDLIRKIPLSLRNPEDRLIWHFDKRGLYSVKSGYHVARCVASLSSHVSTSNSQ---GDK 1058

Query: 963  KMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERR 1070
             +WR+VW  +++ K+++F+WR +  I+P +  L RR
Sbjct: 1059 DLWRRVWHARVQPKVRNFVWRLVKNIVPTKVNLGRR 1094


>gb|KYP76107.1| Putative ribonuclease H protein At1g65750 [Cajanus cajan]
          Length = 682

 Score =  253 bits (647), Expect = 8e-75
 Identities = 132/362 (36%), Positives = 200/362 (55%), Gaps = 6/362 (1%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT    R  I  VL   +     K+LGLP  IGR K+E F++V +   +R+ +W +  +S
Sbjct: 47   NTPIELRSTITDVLGVQENSTPDKYLGLPSFIGRNKREAFKFVKDRIWKRINSWSSKLIS 106

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+ + S+L   P Y MS + LP  V D  +++++ FWW      +  ++W+ W+NL
Sbjct: 107  KAGKEIFVKSILQVFPTYTMSIFLLPHSVTDSLEKMVNTFWWSSNGSNKKGINWLNWNNL 166

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            + P++ GGLGF ++  FN ALL+KQ+W I+T P  +V +LLKA+YFP   +L ++  +  
Sbjct: 167  STPRKDGGLGFKNLDTFNMALLSKQVWCILTNPEALVIRLLKAKYFPDKSILEANLGHNP 226

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWI----SNFYSPIPTGQVGARSEITW 713
            S+ WKSF K+K+ L +G+R+++  GKSI  W  PWI    +   SP  T  V        
Sbjct: 227  SYTWKSFWKAKHFLNDGLRWKIGSGKSISIWNEPWILHNQTYIKSPSCTNDVYKHLH--- 283

Query: 714  VSELIQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYL 893
            VS+LI      WN  ++H +F+   ++ IL TP+YS    D   W  + DG F+V+SAY 
Sbjct: 284  VSDLISSDTLEWNHNIIHHIFDEATTKDILATPVYSHCTDDSYVWKWSNDGCFTVRSAYK 343

Query: 894  RLCDS--KTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLER 1067
             +  S   T   D            K W  +WSL I  K+KH  WR    ILP ++ L++
Sbjct: 344  AITSSLLPTNTMD----------PDKTWNIIWSLPIPAKVKHHTWRVYKNILPTRAQLQK 393

Query: 1068 RG 1073
            +G
Sbjct: 394  KG 395


>dbj|GAU42618.1| hypothetical protein TSUD_238110 [Trifolium subterraneum]
          Length = 588

 Score =  251 bits (641), Expect = 8e-75
 Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 1/334 (0%)
 Frame = +3

Query: 75   KHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIMSCY 254
            K+LG+P  +GR+K++VF YV +   +++  WKA  LS AG+  LI +V  A+P Y+MSC+
Sbjct: 34   KYLGMPTHVGRSKRQVFDYVQDCVWKKIKGWKAQHLSFAGRSTLIKAVAQAIPTYVMSCF 93

Query: 255  KLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDALLA 434
             LPK +C   + ++ +FWWG   E R K+HWIRWS + K K+ GGLGF ++R FN+ LLA
Sbjct: 94   LLPKALCSHIESMIGKFWWGSNCEKR-KIHWIRWSQICKHKKKGGLGFRELRAFNETLLA 152

Query: 435  KQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD-SWMWKSFLKSKYVLYEGMRFQV 611
            KQ WR ITQPN +  ++LKA+Y+P    L +   N + S+ W+S  K+ ++L +   + +
Sbjct: 153  KQGWRCITQPNCMTTQILKAKYYPKKSFLEAEVGNKNVSYTWRSISKASWILKKRGLWNI 212

Query: 612  VDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQES 791
             +G+SI+ W   W+   +        G  +++ WV +L+    + WNR+L+   F   E+
Sbjct: 213  GNGESIKIWNDNWLPRQHGHKIWTPKGEANQV-WVKDLMIPELRYWNRQLIFDTFMHFEA 271

Query: 792  RAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLRLCDSKTQVQDCCEGSQCRKRDGKMW 971
              I+  PI      D   W  T D  ++VKS Y  + + K    +  + +  +  D ++W
Sbjct: 272  EQIVQIPIVHLVSPDEFSWPCTKDVIYTVKSGYQAIQEWKENYNE--QATSYKTNDNRVW 329

Query: 972  RKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
            +K+W LKI  K  H +WR +   LPVQ  L +RG
Sbjct: 330  QKLWQLKIPPKYTHLIWRILQDSLPVQKNLRKRG 363


>ref|XP_024156142.1| uncharacterized protein LOC112164137 [Rosa chinensis]
          Length = 1293

 Score =  261 bits (667), Expect = 8e-75
 Identities = 133/336 (39%), Positives = 197/336 (58%), Gaps = 1/336 (0%)
 Frame = +3

Query: 66   KKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLSLAGKEVLINSVLSALPNYIM 245
            K  K+LGLP  +  +K E F++++E  K ++ NWK   LS+AGKEV+I SV+ ++P Y+M
Sbjct: 555  KHDKYLGLPTKVSYSKIEAFQFIMEKTKNKMKNWKDKTLSVAGKEVMIKSVVQSVPTYVM 614

Query: 246  SCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNLTKPKEIGGLGFHDVRLFNDA 425
            SC++LPK +C +  R +++FWWG  E+GR K+HW+ W  +  PKE GGLGF ++  FN A
Sbjct: 615  SCFELPKHLCQEMHRCMAEFWWGDSEKGR-KIHWLAWDKMCVPKEEGGLGFRNMEYFNQA 673

Query: 426  LLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNADSWMWKSFLKSKYVLYEGMRF 605
            LLAKQ WRI+  P+ ++ K LKA+YFP    +++S    DS+ W+S +K K +L +G+RF
Sbjct: 674  LLAKQGWRILRHPDSLLGKTLKAKYFPNNDFIHASVNQGDSYTWRSLMKGKVLLEKGLRF 733

Query: 606  QVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSELIQDGGKVWNRELVHRLFNLQ 785
            QV  G  I  W  PWI   YS  P   V    E   V++LI    K W  + +  LF   
Sbjct: 734  QVGLGTRISVWFDPWIPRPYSFRPYSTVMEGLEDLTVADLIDPDSKDWMVDWLEELFFAD 793

Query: 786  ESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY-LRLCDSKTQVQDCCEGSQCRKRDG 962
            E   I   P+  +  +DRL W     G +SVKS Y +  C +          SQ    D 
Sbjct: 794  EVDLIRKIPLSLRNPEDRLIWHFDKRGLYSVKSGYHVARCVASLSSHVSTSNSQ---GDK 850

Query: 963  KMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERR 1070
             +WR+VW  +++ K+++F+WR +  I+P +  L RR
Sbjct: 851  DLWRRVWHARVQPKVRNFVWRLVKNIVPTKVNLGRR 886


>ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279669 [Oryza sativa
            Japonica Group]
          Length = 1587

 Score =  261 bits (666), Expect = 2e-74
 Identities = 130/358 (36%), Positives = 205/358 (57%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT+ +E++ +   LN  +E    ++LGLP+ +GR++ ++F Y+ E   +R+  WK   LS
Sbjct: 982  NTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1041

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+LI +V  A+P + M C++L K +CD   ++++++WW   +E  +K+HW+ W+ L
Sbjct: 1042 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWS-NQEKDNKMHWLSWNKL 1100

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            T PK +GGLGF D+ +FN A+LAKQ WR+I  P+ +  ++L+A+YFP G        +  
Sbjct: 1101 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV 1160

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S  K   VL  GM ++V DG  I  W  PWI   +S  P    GA + +T V EL
Sbjct: 1161 SYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGA-NLVTKVEEL 1219

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I      W+ +L+ + F  ++  AI + P++ + + D L W     G F+VKSAY   R 
Sbjct: 1220 IDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEME-DVLAWHFDARGCFTVKSAYKVQRE 1278

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             + +     C   S     D   W+K+W L +  K+KHFLWR  H  L +++ L  RG
Sbjct: 1279 MERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRG 1336


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  261 bits (666), Expect = 2e-74
 Identities = 130/358 (36%), Positives = 205/358 (57%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT+ +E++ +   LN  +E    ++LGLP+ +GR++ ++F Y+ E   +R+  WK   LS
Sbjct: 982  NTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1041

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+LI +V  A+P + M C++L K +CD   ++++++WW   +E  +K+HW+ W+ L
Sbjct: 1042 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWS-NQEKDNKMHWLSWNKL 1100

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            T PK +GGLGF D+ +FN A+LAKQ WR+I  P+ +  ++L+A+YFP G        +  
Sbjct: 1101 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV 1160

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S  K   VL  GM ++V DG  I  W  PWI   +S  P    GA + +T V EL
Sbjct: 1161 SYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGA-NLVTKVEEL 1219

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I      W+ +L+ + F  ++  AI + P++ + + D L W     G F+VKSAY   R 
Sbjct: 1220 IDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEME-DVLAWHFDARGCFTVKSAYKVQRE 1278

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             + +     C   S     D   W+K+W L +  K+KHFLWR  H  L +++ L  RG
Sbjct: 1279 MERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRG 1336


>dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subterraneum]
          Length = 1957

 Score =  260 bits (664), Expect = 3e-74
 Identities = 130/358 (36%), Positives = 200/358 (55%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            N  E+E+  IC  +         ++LGLP+  GR+KKE+F +V +   R++  WK   LS
Sbjct: 1073 NMLEIEKNLICNKIGVKAVTSHSRYLGLPVLFGRSKKEIFSFVKDRVWRKIKGWKEKCLS 1132

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE LI +V  A+PNYIMSCYK+P G C D + +L++FWWG  E  R K+HW+ W NL
Sbjct: 1133 RAGKETLIKAVAQAIPNYIMSCYKIPIGCCRDIEGMLAKFWWGTDERQR-KVHWLSWENL 1191

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
             K K  GG+GF     FN ALL KQ WRII     ++ K+ K+RYFP    + +      
Sbjct: 1192 GKIKNSGGMGFRGFEEFNQALLGKQCWRIIQNQESLIAKVFKSRYFPRTNFMEAQIGYQP 1251

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S   +K  +  G+R+ + +G+++R W+  W+ N         V   ++  +VS+L
Sbjct: 1252 SYAWRSMFSAKKTIEMGLRWTIGNGQNVRIWKDSWLPNQAGFKVCSPVNVLADDAYVSQL 1311

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I    + WN  LV  +F+  E++ IL  P+  +   DR  W    DGN+SV+SA+  ++ 
Sbjct: 1312 IDPISRSWNMNLVRNIFSQFETQQILNIPLSWRLPDDRRIWHWERDGNYSVRSAHHMIKE 1371

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             +S +  +     SQ      ++W+ +W +K    +K+FLWR    ILP +  L+R+G
Sbjct: 1372 AESASTPETSSSNSQ------QIWKAIWKIKAPQSVKNFLWRLARDILPTRCRLQRKG 1423


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  260 bits (664), Expect = 3e-74
 Identities = 130/358 (36%), Positives = 205/358 (57%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT+ +E+  +   LN  +E    K+LGLP+ +GR++ ++F Y+ E   +R+  WK   LS
Sbjct: 955  NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1014

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+LI +V  A+P + M C++L K +CD   ++++++WW   +E  +K+HW+ W+ L
Sbjct: 1015 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWS-NQEKDNKMHWLSWNKL 1073

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            T PK +GGLGF D+ +FN A+LAKQ WR+I  P+ +  ++L+A+YFP G        +  
Sbjct: 1074 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV 1133

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S  K   VL  GM +++ DG  I  W  PWI   +S  P    GA + +T V EL
Sbjct: 1134 SYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSRKPMTPRGA-NLVTKVEEL 1192

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I      W+ +L+ + F  ++  AI + P++ + + D L W     G F+VKSAY   R 
Sbjct: 1193 IDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEME-DVLAWHFDARGCFTVKSAYKVQRE 1251

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             + +     C   S     D   W+K+W L +  K+KHFLWR  H  L +++ L+ RG
Sbjct: 1252 MERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRG 1309


>gb|PNY14301.1| ribonuclease H [Trifolium pratense]
          Length = 1196

 Score =  258 bits (659), Expect = 7e-74
 Identities = 128/359 (35%), Positives = 211/359 (58%), Gaps = 3/359 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            N   +++ +IC ++     + + ++LG PI  GR+KK +F +V++   ++V  WK   LS
Sbjct: 560  NVPSIDKNSICNMMGVKAVEAQSRYLGFPIPFGRSKKVIFSFVMDRIWKKVKGWKERCLS 619

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE LI +V  A+PNYI+SCYK+P G C D D +L++FWWG  ++ R K+HW+ W  L
Sbjct: 620  RAGKETLIKAVAQAIPNYILSCYKMPLGCCKDIDAMLAKFWWGSNDDKR-KIHWMSWKRL 678

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            +KPK  GG+GF  +  FN ALL K  WR++     ++ K+L++RY+P G  + +S     
Sbjct: 679  SKPKNTGGMGFRGMEDFNKALLGKHCWRLVGGECSLLEKVLRSRYYPKGDFMTASEGYQP 738

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISN---FYSPIPTGQVGARSEITWV 716
            S+ W+S + ++ V+  G R+ V +G+++R W+  W+ +     S  P+  +   S+   V
Sbjct: 739  SFAWRSIISAREVINLGERWCVGNGQNVRIWKDRWMVDRNLLRSRTPSCDLDEDSK---V 795

Query: 717  SELIQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAYLR 896
            S LI    + WNR LV   F+  E++ I++ P+  +   D   W    +G +SV+SAY  
Sbjct: 796  SALIDHDTRQWNRTLVFNCFDEAEAKKIVSIPLSCRLPLDNRIWHWEKNGAYSVRSAYHL 855

Query: 897  LCDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
            LCD K ++    E      R+ K+W+++W   + NK+K+FLWR +  ILP +  L ++G
Sbjct: 856  LCDEKRKL----EPGPSIVREEKIWKEIWKAPLPNKIKNFLWRLVKDILPTRENLAKKG 910


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  259 bits (661), Expect = 7e-74
 Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT+ +E+  +   LN  +E    K+LGLP+ +GR++ ++F Y+ E   +R+  WK   LS
Sbjct: 923  NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 982

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+LI +V   +P + M C++L K +CD   ++++++WW   +E  +K+HW+ W+ L
Sbjct: 983  RAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWS-NQEKDNKMHWLSWNKL 1041

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            T PK +GGLGF D+ +FN A+LAKQ WR+I  P+ +  ++L+A+YFP G        +  
Sbjct: 1042 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV 1101

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S  K   VL  GM ++V DG  I  W  PWI   +S  P    GA + +T V EL
Sbjct: 1102 SYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGA-NLVTKVEEL 1160

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I      W+ +L+ + F  ++  AI + P++ + + D L W     G F+VKSAY   R 
Sbjct: 1161 IDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEME-DVLAWHFDARGCFTVKSAYKVQRE 1219

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             + +     C   S     D   W+K+W L +  K+KHFLWR  H  L +++ L  RG
Sbjct: 1220 MERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRG 1277


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  259 bits (661), Expect = 7e-74
 Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 2/358 (0%)
 Frame = +3

Query: 6    NTAEMERKNICGVLNGMQEQKKIKHLGLPITIGRAKKEVFRYVVEVAKRRVLNWKANFLS 185
            NT+ +E+  +   LN  +E    K+LGLP+ +GR++ ++F Y+ E   +R+  WK   LS
Sbjct: 927  NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 986

Query: 186  LAGKEVLINSVLSALPNYIMSCYKLPKGVCDDFDRVLSQFWWGLGEEGRSKLHWIRWSNL 365
             AGKE+LI +V   +P + M C++L K +CD   ++++++WW   +E  +K+HW+ W+ L
Sbjct: 987  RAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWS-NQEKDNKMHWLSWNKL 1045

Query: 366  TKPKEIGGLGFHDVRLFNDALLAKQLWRIITQPNLVVCKLLKARYFPCGGMLNSSPKNAD 545
            T PK +GGLGF D+ +FN A+LAKQ WR+I  P+ +  ++L+A+YFP G        +  
Sbjct: 1046 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV 1105

Query: 546  SWMWKSFLKSKYVLYEGMRFQVVDGKSIRAWESPWISNFYSPIPTGQVGARSEITWVSEL 725
            S+ W+S  K   VL  GM ++V DG  I  W  PWI   +S  P    GA + +T V EL
Sbjct: 1106 SYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGA-NLVTKVEEL 1164

Query: 726  IQDGGKVWNRELVHRLFNLQESRAILTTPIYSQKDKDRLRWILTPDGNFSVKSAY--LRL 899
            I      W+ +L+ + F  ++  AI + P++ + + D L W     G F+VKSAY   R 
Sbjct: 1165 IDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEME-DVLAWHFDARGCFTVKSAYKVQRE 1223

Query: 900  CDSKTQVQDCCEGSQCRKRDGKMWRKVWSLKIKNKLKHFLWRCIHGILPVQSMLERRG 1073
             + +     C   S     D   W+K+W L +  K+KHFLWR  H  L +++ L  RG
Sbjct: 1224 MERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRG 1281