BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00035769
         (459 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX80974.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   132   7e-35
dbj|GAU44853.1| hypothetical protein TSUD_112270 [Trifolium subt...   134   1e-33
gb|PNX58252.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   126   2e-32
gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   130   5e-32
gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   124   6e-30
dbj|GAU42021.1| hypothetical protein TSUD_90550 [Trifolium subte...   122   2e-29
dbj|GAU23118.1| hypothetical protein TSUD_305660 [Trifolium subt...   122   2e-29
dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subt...   120   9e-29
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   120   1e-28
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt...   119   3e-28
gb|PNY06274.1| retrotransposon-related protein [Trifolium pratense]   119   4e-28
gb|PNX96841.1| retrotransposon-related protein, partial [Trifoli...   119   4e-28
gb|PNY17891.1| retrotransposon-related protein [Trifolium pratense]   119   4e-28
gb|KYP45930.1| Retrotransposable element Tf2, partial [Cajanus c...   115   8e-28
gb|PNX73402.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   118   8e-28
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif...   117   1e-27
gb|PNX92330.1| retrotransposon-related protein [Trifolium pratense]   117   1e-27
gb|PNX87017.1| hypothetical protein L195_g043101, partial [Trifo...   115   2e-27
gb|PNY15662.1| retrotransposon-related protein [Trifolium pratense]   116   4e-27
dbj|GAU50876.1| hypothetical protein TSUD_411060 [Trifolium subt...   115   5e-27

>gb|PNX80974.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 313

 Score =  132 bits (333), Expect = 7e-35
 Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 6/158 (3%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRV------ 295
           FV+RTDH+SIKEL  QV+ TP+QQ YV++L+G+ F+IEYKPG  N VAD LSRV      
Sbjct: 78  FVIRTDHQSIKELLQQVIQTPDQQKYVRKLLGFQFRIEYKPGASNRVADALSRVPGEWSE 137

Query: 294 YEDQPAATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYH 115
            +  P  +F AL++ P   + Q+L + N++D  L+  H+    G LP  Y+  +G++ + 
Sbjct: 138 ADSPPDTSFMALVTTPTFGIVQQLQKENASDPFLLAFHQQHTEGILPIPYSIINGLVLHK 197

Query: 114 NRIVVGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            R V+ S     + ++ EFHATP  GH GIKRT+ ++A
Sbjct: 198 GRYVLNSASPLCSLIISEFHATPSGGHAGIKRTLTRVA 235


>dbj|GAU44853.1| hypothetical protein TSUD_112270 [Trifolium subterraneum]
          Length = 815

 Score =  134 bits (338), Expect = 1e-33
 Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
           F+++TDH+S+KEL  QV+ TPEQQ Y+ +L+GYN++I+YKPG  N+VAD LSR   D   
Sbjct: 306 FIIQTDHKSLKELLTQVIQTPEQQHYLAKLLGYNYEIQYKPGNTNIVADALSRAIIDDSQ 365

Query: 276 ATFSALMSYPQCELKQKLLEVNSNDSGLIRLH-KLKDNGTLPPGYTERDGILYYHNRIVV 100
             ++  +S P       L    ++DS  + ++ KL+ + +  PGY  +DG+L YH+RI V
Sbjct: 366 TCYA--LSVPHVTFLDDLKRELASDSEFVSIYDKLRRDPSSVPGYKLKDGLLLYHDRIWV 423

Query: 99  GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
                F+  LMREFH TPIAGH G+ +T+ +L+
Sbjct: 424 SHKSKFKLLLMREFHDTPIAGHAGLVKTMKRLS 456


>gb|PNX58252.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 323

 Score =  126 bits (317), Expect = 2e-32
 Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
           FV+RTDH+SIKEL  QV+ TPEQQ YV++L+G+ F+IEYK G  N VAD LSRV  D PA
Sbjct: 53  FVIRTDHKSIKELLQQVIQTPEQQSYVRKLLGFQFRIEYKSGASNKVADALSRVPADWPA 112

Query: 276 A----TFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNR 109
                   AL+S P   +  +L + N++DS     H+ +  G L   YT  +G+L +  R
Sbjct: 113 CEHTPALRALVSSPTYGIITQLQKDNASDSFYQTFHEQQAQGLLRYPYTIVNGVLLHAGR 172

Query: 108 IVVGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            V+       +T++ EFH TP  GH G+KRT+V++A
Sbjct: 173 YVLKPTSPLCSTVISEFHDTPSGGHAGVKRTLVRVA 208


>gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 856

 Score =  130 bits (326), Expect = 5e-32
 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
           F+++TDHRS+KEL  QV+ TPEQQ Y+ +L+GY++ I+YKPGK N VAD LSR +E   A
Sbjct: 257 FIIQTDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGKSNTVADALSRAFEGVDA 316

Query: 276 ATFSALMSYPQCELKQKLLEVNSNDSGLIRLH-KLKDNGTLPPGYTERDGILYYHNRIVV 100
                ++S PQ     +L +  SND   I L  K++      P +T RD ++  HN+I V
Sbjct: 317 TLH--ILSLPQFLFLDELRQDLSNDPAYIELRAKIESTPHQFPEFTLRDALILRHNKIWV 374

Query: 99  GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
                F+  LM+EFH TP+ GH GI +T+ +L+
Sbjct: 375 SPTSRFKRLLMKEFHETPVGGHGGIVKTLKRLS 407


>gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1410

 Score =  124 bits (311), Expect = 6e-30
 Identities = 60/151 (39%), Positives = 95/151 (62%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            F + TDH+S+KEL  QV+ TPEQQ+Y+ +L+GY+FKI+YK GK N+VAD LSRV  D P 
Sbjct: 818  FTIHTDHKSLKELISQVIQTPEQQVYLSKLLGYDFKIQYKSGKANVVADALSRV--DSPT 875

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIVVG 97
                 +  +    L +  L +  +       H+++ N +  P Y    G+L+Y N+I + 
Sbjct: 876  CLTLTMPHF--IFLDELRLSLQPSTEFTTLFHQVQQNPSTYPNYKTHQGLLFYKNKIWLN 933

Query: 96   SDQNFRNTLMREFHATPIAGHVGIKRTIVKL 4
            S   F+  L++EFH +P++GH+GI++T ++L
Sbjct: 934  SSNPFKQRLLQEFHNSPLSGHMGIQKTYIRL 964


>dbj|GAU42021.1| hypothetical protein TSUD_90550 [Trifolium subterraneum]
          Length = 1322

 Score =  122 bits (307), Expect = 2e-29
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            FVV TDH+S+K L  Q V++P+QQ ++ +L+GY F+++YKPG  N  AD LSR Y++Q  
Sbjct: 737  FVVYTDHKSLKHLLQQKVNSPDQQCWLSKLLGYQFEVKYKPGLENKAADALSRCYDEQ-- 794

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIR-LHKLKDNGTLPPGYTERDGILYYHNRIVV 100
                A++ YPQ    QKLL+   +D  + + L ++  N +  PGYT   G+L+YH R+V+
Sbjct: 795  -ELQAMVPYPQWLESQKLLDEVKDDVEVQKLLQEVLTNPSGKPGYTVHQGVLFYHGRLVL 853

Query: 99   GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
             S       L+ EFH+TP+ GH G  RT  +LA
Sbjct: 854  SSKSPSIPLLLEEFHSTPMGGHSGYLRTYRRLA 886


>dbj|GAU23118.1| hypothetical protein TSUD_305660 [Trifolium subterraneum]
          Length = 1425

 Score =  122 bits (307), Expect = 2e-29
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            FVV TDH+S+K L  Q V++P+QQ ++ +L+GY F+++YKPG  N  AD LSR Y++Q  
Sbjct: 898  FVVYTDHKSLKHLLQQKVNSPDQQCWLSKLLGYQFEVKYKPGLENKAADALSRCYDEQ-- 955

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIR-LHKLKDNGTLPPGYTERDGILYYHNRIVV 100
                A++ YPQ    QKLL+   +D  + + L ++  N +  PGYT   G+L+YH R+V+
Sbjct: 956  -ELQAMVPYPQWLESQKLLDEVKDDVEVQKLLQEVLTNPSGKPGYTVHQGVLFYHGRLVL 1014

Query: 99   GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
             S       L+ EFH+TP+ GH G  RT  +LA
Sbjct: 1015 SSKSPSIPLLLEEFHSTPMGGHSGYLRTYRRLA 1047


>dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subterraneum]
          Length = 1524

 Score =  120 bits (302), Expect = 9e-29
 Identities = 59/151 (39%), Positives = 95/151 (62%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            F + TDH+S+KEL  QV+ TPEQQ+Y+ +L+G++FKI+YK GK N+VAD LSRV  D P 
Sbjct: 913  FTIHTDHKSLKELISQVIQTPEQQVYLSKLLGFDFKIQYKSGKTNVVADALSRV--DNPT 970

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIVVG 97
                 +  +    L +  L +  +       H+++ N    P Y    G+L+Y N+I + 
Sbjct: 971  CLTLTMPHF--IFLDELRLSLQPSTEFTTLSHQVQQNPANYPDYKTHQGLLFYKNKIWLN 1028

Query: 96   SDQNFRNTLMREFHATPIAGHVGIKRTIVKL 4
            S   F++ L++EFH +P++GH+GI++T ++L
Sbjct: 1029 SSNPFKHRLLQEFHNSPLSGHMGIQKTYIRL 1059


>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
 gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1494

 Score =  120 bits (301), Expect = 1e-28
 Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            F+++TDH+S+KEL  QV+ TPEQQ Y+ +L+GY++ I+YKPG  N VAD LSR  +   A
Sbjct: 893  FIIQTDHKSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGSTNTVADALSRSLDPSDA 952

Query: 276  ATFSALMSYPQC----ELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNR 109
            +  +  +S PQ     ELKQ  LE +S    L    +    G   PGY  ++G++ Y  R
Sbjct: 953  SIMA--LSVPQFVFINELKQD-LEADSTFQELRACIETDPAGN--PGYAVKNGLILYQGR 1007

Query: 108  IVVGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            I +    ++++ L++EFH TPI GH GI +T+ +LA
Sbjct: 1008 IWISPTSHYKSLLLKEFHETPIGGHAGIIKTLKRLA 1043


>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
          Length = 1853

 Score =  119 bits (298), Expect = 3e-28
 Identities = 60/149 (40%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            +FVV TD RS++EL  QV+ TPEQQ Y+ +L+GY+++I+YKPG  N VAD LSRV+E+ P
Sbjct: 927  KFVVHTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIKYKPGTQNRVADALSRVHENFP 986

Query: 279  AATFSALMSYPQCELKQKL-LEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIV 103
            +      ++ P  +  +KL  E+N +      + K+ ++    P +    G+LY+  R+ 
Sbjct: 987  SV---MAITIPHWKFLEKLQAEINQDSEVKDLMSKVANDPNSYPNFKIIKGLLYFKGRLY 1043

Query: 102  VGSDQNFRNTLMREFHATPIAGHVGIKRT 16
            + +  +F+N L+ E HATP+ GH GI+RT
Sbjct: 1044 IPASSSFKNILLEEIHATPVGGHSGIQRT 1072


>gb|PNY06274.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1078

 Score =  119 bits (297), Expect = 4e-28
 Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            EFVV TDH+S+K    Q + +P+QQ ++ +L+GY F++ YKPG  N  AD LSR Y++  
Sbjct: 858  EFVVYTDHKSLKHFLQQRISSPDQQCWLAKLLGYQFEVRYKPGLENKAADALSRCYDE-- 915

Query: 279  AATFSALMSYPQCELKQKLLEVNSNDSGLIR-LHKLKDNGTLPPGYTERDGILYYHNRIV 103
                ++++SYP  + KQKLL+  + D  +   + K++DN    PG+  + G+L YH+R+V
Sbjct: 916  -TELNSIVSYPTWDEKQKLLDEIATDPYIQNMIKKVQDNPNDKPGFVVKQGVLLYHDRLV 974

Query: 102  VGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            +         L+ EFH TP  GH G  RT  +LA
Sbjct: 975  ISPHSPSIPWLLEEFHCTPAGGHSGFLRTYRRLA 1008


>gb|PNX96841.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1085

 Score =  119 bits (297), Expect = 4e-28
 Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            EFVV TDH+S+K    Q + +P+QQ ++ +L+GY F++ YKPG  N  AD LSR Y++  
Sbjct: 878  EFVVYTDHKSLKHFLQQRISSPDQQCWLAKLLGYQFEVRYKPGLENKAADALSRCYDE-- 935

Query: 279  AATFSALMSYPQCELKQKLLEVNSNDSGLIR-LHKLKDNGTLPPGYTERDGILYYHNRIV 103
                ++++SYP  + KQKLL+  + D  +   + K++DN    PG+  + G+L YH+R+V
Sbjct: 936  -TELNSIVSYPTWDEKQKLLDEIATDPYIQNMIKKVQDNPNDKPGFVVKQGVLLYHDRLV 994

Query: 102  VGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            +         L+ EFH TP  GH G  RT  +LA
Sbjct: 995  ISPHSPSIPWLLEEFHCTPAGGHSGFLRTYRRLA 1028


>gb|PNY17891.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1461

 Score =  119 bits (297), Expect = 4e-28
 Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            EFVV TDH+S+K    Q + +P+QQ ++ +L+GY F++ YKPG  N  AD LSR Y++  
Sbjct: 869  EFVVYTDHKSLKHFLQQRISSPDQQCWLAKLLGYQFEVRYKPGLENKAADALSRCYDE-- 926

Query: 279  AATFSALMSYPQCELKQKLLEVNSNDSGLIR-LHKLKDNGTLPPGYTERDGILYYHNRIV 103
                ++++SYP  + KQKLL+  + D  +   + K++DN    PG+  + G+L YH+R+V
Sbjct: 927  -TELNSIVSYPTWDEKQKLLDEIATDPYIQNMIKKVQDNPNDKPGFVVKQGVLLYHDRLV 985

Query: 102  VGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            +         L+ EFH TP  GH G  RT  +LA
Sbjct: 986  ISPHSPSIPWLLEEFHCTPAGGHSGFLRTYRRLA 1019


>gb|KYP45930.1| Retrotransposable element Tf2, partial [Cajanus cajan]
          Length = 392

 Score =  115 bits (289), Expect = 8e-28
 Identities = 66/154 (42%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRV--YEDQ 283
           FV+RTDH+SIKEL  QV+ TP QQ YV++LMG+  +IEYK G  N V D LSRV   +D 
Sbjct: 174 FVIRTDHKSIKELLQQVIQTPGQQAYVRKLMGFTIRIEYKSGSSNSVVDALSRVPATQDD 233

Query: 282 PAAT----FSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYH 115
            A T    F AL+S P  ++  +L + N  D  L   H    +G L   Y+ R G+L +H
Sbjct: 234 NATTLPSIFLALVSGPVFQIIDQLKQENLTDPFLQSFHFKHQHGNLLFPYSVRQGLLIFH 293

Query: 114 NRIVVGSDQNFRNTLMREFHATPIAGHVGIKRTI 13
            R  +    +     + EF+ TP  GH GIKRT+
Sbjct: 294 GRYEISPTSSLCTVFINEFYDTPSGGHAGIKRTL 327


>gb|PNX73402.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 895

 Score =  118 bits (295), Expect = 8e-28
 Identities = 57/152 (37%), Positives = 90/152 (59%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            +F++RTD +S++ L  Q + TP+QQ ++ + +GY+F IEYKPGK N+ AD LSRV     
Sbjct: 639  KFIIRTDQKSLRSLMDQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADALSRV----- 693

Query: 279  AATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIVV 100
                +   S PQC+   ++      D  L+ +     +G  P  YT +DG+LY+  R+V+
Sbjct: 694  ---MTLSWSEPQCQFIDEIRAALKKDQNLVEIILKCISGKAPIQYTMKDGLLYWKQRLVI 750

Query: 99   GSDQNFRNTLMREFHATPIAGHVGIKRTIVKL 4
              + +  N ++ EFH +PI GH GI RTI ++
Sbjct: 751  PKESDLLNKVLYEFHTSPIGGHAGITRTIARI 782


>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
          Length = 893

 Score =  117 bits (294), Expect = 1e-27
 Identities = 59/152 (38%), Positives = 95/152 (62%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
           FV+++DHRS+KEL  QV+ TPEQQ Y+ +L+GY++ I+YKPGK N+VAD LSR  E   +
Sbjct: 299 FVIQSDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQYKPGKTNVVADALSRCCEPS-S 357

Query: 276 ATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIVVG 97
           A  + L + P   + +   E+  N S     H +  + T  P +   +G+L  + RI + 
Sbjct: 358 AELNLLSTPPFLFINELREELQQNSSYQELCHNVISDPTKFPDFVISNGLLLMNGRIWIP 417

Query: 96  SDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
           ++  F+  L++EFH TP+ GH G+ +T+ +L+
Sbjct: 418 ANSKFKVLLLKEFHETPVGGHAGVIKTLKRLS 449


>gb|PNX92330.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1568

 Score =  117 bits (294), Expect = 1e-27
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459  EFVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQP 280
            +F V TDH+S+K    Q + +P+QQ ++ +L+GY F++++KPG  N  AD LSR Y+D  
Sbjct: 974  QFTVYTDHKSLKHFLQQRITSPDQQGWLAKLLGYQFEVKFKPGMENKAADALSRCYDDIE 1033

Query: 279  AATFSALMSYPQCELKQKLLEVNSNDSGLIRL-HKLKDNGTLPPGYTERDGILYYHNRIV 103
              T   L+SYPQ    +KLL+   ND+ + +L  +L+ N    PG+  + G+L+YH+R+V
Sbjct: 1034 LKT---LLSYPQWVDSKKLLDEVHNDTEIQKLIQELQTNPDAKPGFAVKHGVLFYHDRLV 1090

Query: 102  VGSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
            + S       L+ EFH+TP  GH G  RT  +LA
Sbjct: 1091 LSSKSPSIPLLLEEFHSTPSGGHSGFLRTYRRLA 1124


>gb|PNX87017.1| hypothetical protein L195_g043101, partial [Trifolium pratense]
          Length = 504

 Score =  115 bits (289), Expect = 2e-27
 Identities = 60/153 (39%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456 FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
           FV++TDHRS+KEL  QV+ TPEQQ Y+ +L+GY++ IEYK GK N+VAD LSR +E+  A
Sbjct: 221 FVIQTDHRSLKELLTQVIQTPEQQFYLSKLLGYHYTIEYKSGKSNIVADALSRSFENPEA 280

Query: 276 ATFSALMSYPQCELKQKLLEVNSNDSGLIRLH-KLKDNGTLPPGYTERDGILYYHNRIVV 100
           +    ++S PQ  L  +L +   +DS  + L  +++ +    P ++  DG++    +I V
Sbjct: 281 SLH--VLSTPQFLLVDELKQEQLSDSAYLELKARIEASPGSHPDFSLVDGLILRCGKIWV 338

Query: 99  GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
                F+  L++E+H +PI GH G+ +T+ +L+
Sbjct: 339 SPLSRFKRVLLQEYHESPIGGHAGVIKTLKRLS 371


>gb|PNY15662.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1531

 Score =  116 bits (290), Expect = 4e-27
 Identities = 61/153 (39%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            F V TDH+S+K +  Q V +P+QQ ++ +L+GY F+++YKPG  N  AD LSR Y++   
Sbjct: 942  FTVFTDHKSLKHILLQKVTSPDQQGWLAKLLGYQFEVKYKPGLENKAADALSRCYDE--- 998

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIRL-HKLKDNGTLPPGYTERDGILYYHNRIVV 100
            A F+ L+SYP     +KLL+  + DS +  L   ++ +    PGY  ++G+L+YH R+V+
Sbjct: 999  AEFNTLLSYPTWIDSKKLLDEVTQDSDIQSLIEDIQTDSNAKPGYCVKNGVLFYHGRLVI 1058

Query: 99   GSDQNFRNTLMREFHATPIAGHVGIKRTIVKLA 1
                     L+ EFH TP  GH G  RT  +LA
Sbjct: 1059 SHKSPSIPLLLEEFHCTPTGGHSGFLRTYRRLA 1091


>dbj|GAU50876.1| hypothetical protein TSUD_411060 [Trifolium subterraneum]
          Length = 1199

 Score =  115 bits (289), Expect = 5e-27
 Identities = 60/151 (39%), Positives = 94/151 (62%)
 Frame = -1

Query: 456  FVVRTDHRSIKELF*QVVHTPEQQIYVQELMGYNFKIEYKPGKINLVADGLSRVYEDQPA 277
            F + TDH+S+KEL  QV+ TPEQQIY+ +LM Y++ I YK GK N+VAD LSR+ E  P+
Sbjct: 656  FTIYTDHQSLKELLTQVIQTPEQQIYLAKLMVYDYSIHYKSGKTNVVADALSRLPE-TPS 714

Query: 276  ATFSALMSYPQCELKQKLLEVNSNDSGLIRLHKLKDNGTLPPGYTERDGILYYHNRIVVG 97
                 L       L+Q  L + +    +  L+ ++ N T  P +   +G+++YH+RI + 
Sbjct: 715  GMLLTLSLPHFIFLEQLKLALAACKPFITLLNNIQTNPTNYPNHKIHNGLIFYHDRIWLD 774

Query: 96   SDQNFRNTLMREFHATPIAGHVGIKRTIVKL 4
                FR T++ EFH++PI GH+G+ +T+ +L
Sbjct: 775  PSMPFRFTILEEFHSSPIGGHMGVTKTLARL 805