BLASTX nr result
ID: Rehmannia29_contig00035659
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00035659
(532 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte... 110 9e-25
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo... 107 9e-24
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo... 107 1e-23
gb|KYP38376.1| Retrovirus-related Pol polyprotein from transposo... 101 2e-23
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri... 105 7e-23
gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposo... 104 8e-23
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense] 104 9e-23
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc... 103 2e-22
dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt... 103 2e-22
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote... 103 3e-22
gb|KYP65239.1| hypothetical protein KK1_011471 [Cajanus cajan] 102 5e-22
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo... 102 6e-22
gb|KYP32605.1| Retrovirus-related Pol polyprotein from transposo... 97 8e-22
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera] 101 1e-21
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo... 97 2e-21
gb|KYP75950.1| Retrovirus-related Pol polyprotein from transposo... 97 3e-21
ref|XP_015383571.1| PREDICTED: uncharacterized protein LOC107176... 98 4e-21
gb|PKU77855.1| Retrovirus-related Pol polyprotein from transposo... 100 5e-21
gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposo... 97 6e-21
gb|KYP47251.1| Retrovirus-related Pol polyprotein from transposo... 99 7e-21
>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
Length = 1353
Score = 110 bits (275), Expect = 9e-25
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ PL+L+HTD+WGP+PI GF YY+ FVD +RFT I
Sbjct: 468 CEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWI 527
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KS+ QAFIQFKNL E QFNK+IK
Sbjct: 528 YPLKQKSETVQAFIQFKNLTENQFNKRIK 556
>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 677
Score = 107 bits (267), Expect = 9e-24
Identities = 49/89 (55%), Positives = 62/89 (69%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ L+LIHTD+WGP+PI GF YY+ F+D ++RFT I
Sbjct: 476 CEACQLGKSHLLPFKSSSSHAQEVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTWI 535
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KSD AF+QFKN+VE QFNK+IK
Sbjct: 536 YPLKQKSDTIHAFMQFKNMVENQFNKRIK 564
>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1165
Score = 107 bits (267), Expect = 1e-23
Identities = 51/89 (57%), Positives = 63/89 (70%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF +S + PLDL+H+D+WGP+PI GF YY+ F+D +RFT I
Sbjct: 399 CEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWI 458
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KSD QAFIQF+NLVE QFNK+IK
Sbjct: 459 YPLKQKSDVFQAFIQFRNLVENQFNKRIK 487
>gb|KYP38376.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 201
Score = 101 bits (251), Expect = 2e-23
Identities = 48/95 (50%), Positives = 62/95 (65%)
Frame = +3
Query: 243 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 422
N C SC K H+LPF+DS T +PL+LI++D+WGPSPI G YYI F+D
Sbjct: 65 NSDSFFCQSCCMGKSHQLPFIDSKTVYTSPLELIYSDIWGPSPIPATNGARYYIVFLDAY 124
Query: 423 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 527
+++T IYLL+ KS A AFIQFK+ E QF K+K
Sbjct: 125 SKYTWIYLLQFKSQAFDAFIQFKSHAELQFGSKLK 159
>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
Length = 1009
Score = 105 bits (261), Expect = 7e-23
Identities = 50/89 (56%), Positives = 59/89 (66%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S + PLDLIHTD+WGP+PI GF YY+ F+D +RFT I
Sbjct: 199 CEACQFGKLHLLPFKSSYSHAQEPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWI 258
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KS+ AF QFK LVE QFNK+IK
Sbjct: 259 YPLKQKSETIHAFTQFKTLVENQFNKRIK 287
>gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 605
Score = 104 bits (260), Expect = 8e-23
Identities = 50/96 (52%), Positives = 61/96 (63%)
Frame = +3
Query: 243 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 422
N + LC SC K HK PF SNT +PL LI+TD+WGP+PI G YYI F+D
Sbjct: 471 NSTFSLCKSCCLGKLHKQPFYYSNTVYTSPLQLIYTDIWGPAPIPSSSGSKYYIEFIDAF 530
Query: 423 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIKC 530
++FT IYL+ KS A Q F FKN++E Q N KIKC
Sbjct: 531 SKFTWIYLISNKSQALQCFSHFKNMIENQLNSKIKC 566
>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
Length = 1000
Score = 104 bits (260), Expect = 9e-23
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ PL LIH+D+WGP+PI GF YY+ F+D +RFT I
Sbjct: 474 CEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWI 533
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
+ LK KSD AFIQFKNL E QFNKKIK
Sbjct: 534 FPLKQKSDTIHAFIQFKNLAENQFNKKIK 562
>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
[Trifolium pratense]
Length = 835
Score = 103 bits (258), Expect = 2e-22
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S + L+L+HTD+WGP+PI GF YY+ F+D TRFT I
Sbjct: 475 CEACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWI 534
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KSD AFIQFKN+VE QF+KKIK
Sbjct: 535 YPLKQKSDTAHAFIQFKNMVENQFSKKIK 563
>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
Length = 1387
Score = 103 bits (258), Expect = 2e-22
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ PL LIH+D+WGP+PI GF YY+ F+D +RFT I
Sbjct: 468 CEACQFGKLHLLPFKPSSSHVQEPLALIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWI 527
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
+ LK KSD AFIQFKNL E QFNKKIK
Sbjct: 528 FPLKQKSDTIHAFIQFKNLAENQFNKKIK 556
>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
[Trifolium pratense]
Length = 1242
Score = 103 bits (256), Expect = 3e-22
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ PLDLIHTD+WGP+PI F YY+ F+D +RFT I
Sbjct: 475 CEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWI 534
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
+ LK KS+ AF QFKNLVE QFNKKIK
Sbjct: 535 FPLKQKSETIHAFNQFKNLVENQFNKKIK 563
>gb|KYP65239.1| hypothetical protein KK1_011471 [Cajanus cajan]
Length = 510
Score = 102 bits (253), Expect = 5e-22
Identities = 48/96 (50%), Positives = 62/96 (64%)
Frame = +3
Query: 243 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 422
NK +I+C C K H+LPF S T PL +I++DLWGPSPI G YY+ FVD
Sbjct: 165 NKKKIVCKECCYGKIHELPFSSSTTTFTTPLQMIYSDLWGPSPIPSSNGSRYYMHFVDAY 224
Query: 423 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIKC 530
+++T IYLL+ KS A FI FKN++E Q + KIKC
Sbjct: 225 SKYTWIYLLQHKSQALTCFIHFKNMIENQLDHKIKC 260
>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 1054
Score = 102 bits (254), Expect = 6e-22
Identities = 49/89 (55%), Positives = 60/89 (67%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C SC K HKL ++T P DL+HTDLWGPSPI G+ YYI+FVD T+FT +
Sbjct: 273 CDSCCVGKSHKLHAPSTDTIYSKPFDLVHTDLWGPSPITSHCGYTYYIAFVDACTKFTWL 332
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KSDA AF QF +LV+TQF+ +IK
Sbjct: 333 YFLKRKSDAISAFTQFHSLVQTQFSSRIK 361
>gb|KYP32605.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 206
Score = 97.1 bits (240), Expect = 8e-22
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = +3
Query: 255 ILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT 434
+LC SC K H+LPF++SN++ + PL L+ +D+WGPSP+ G YYI F+D ++++
Sbjct: 54 VLCESCCMGKAHQLPFINSNSEYHTPLQLVFSDIWGPSPVATSTGARYYIVFLDAFSKYS 113
Query: 435 *IYLLKLKSDATQAFIQFKNLVETQFNKKIK 527
IYLL KS+A AF QFK+ E Q N KIK
Sbjct: 114 WIYLLNSKSEAFTAFQQFKSSAELQLNTKIK 144
>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
Length = 1453
Score = 101 bits (251), Expect = 1e-21
Identities = 58/128 (45%), Positives = 78/128 (60%)
Frame = +3
Query: 144 HLQISILPSTLLK**EINLTSRLGTLD*GMHIINKSQILCHSCMKAKFHKLPFLDSNTQN 323
H+ SIL S L K ++ LTS L T LC +C AK H+LPF + T++
Sbjct: 418 HVNHSIL-SLLNKKGQLFLTSLLPTPS-----------LCSTCQLAKSHRLPFSSNTTRS 465
Query: 324 YAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*IYLLKLKSDATQAFIQFKNLVE 503
L L+H D+WG +P+K LGFNYY+ F+D +RFT +Y LKLKSD F+QF+ LVE
Sbjct: 466 NVVLGLVHCDIWGLAPVKSNLGFNYYVLFIDDYSRFTWLYPLKLKSDFFDIFLQFQKLVE 525
Query: 504 TQFNKKIK 527
Q++ KIK
Sbjct: 526 NQYSTKIK 533
>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 264
Score = 97.4 bits (241), Expect = 2e-21
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
C +C K H LPF S++ +L+HTD+WGP+P+ GF YY+ F+D +RFT I
Sbjct: 64 CEACQYGKMHFLPFKTSSSHAKEIFELVHTDVWGPAPVTSPSGFKYYVHFLDDFSRFTWI 123
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIK 527
Y LK KSD QAF QFKN+ E FNK+IK
Sbjct: 124 YPLKHKSDTAQAFTQFKNMAENLFNKRIK 152
>gb|KYP75950.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 261
Score = 97.1 bits (240), Expect = 3e-21
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = +3
Query: 255 ILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT 434
+LC SC K H+LPF++SN++ + PL L+ +D+WGPSP+ G YYI F+D ++++
Sbjct: 114 VLCESCCMGKAHQLPFINSNSEYHTPLQLVFSDIWGPSPVATSTGARYYIVFLDAFSKYS 173
Query: 435 *IYLLKLKSDATQAFIQFKNLVETQFNKKIK 527
IYLL KS+A AF QFK+ E Q N KIK
Sbjct: 174 WIYLLNSKSEAFTAFQQFKSSAELQLNTKIK 204
>ref|XP_015383571.1| PREDICTED: uncharacterized protein LOC107176065 [Citrus sinensis]
Length = 356
Score = 98.2 bits (243), Expect = 4e-21
Identities = 51/97 (52%), Positives = 61/97 (62%)
Frame = +3
Query: 237 IINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD 416
I++ + LC +C K H+ F S T+ L+LIHTDLWGPSP G+ YYISFVD
Sbjct: 190 IVDCTNSLCEACQLGKVHRQSFPASETKTKGVLELIHTDLWGPSPTVSRNGYKYYISFVD 249
Query: 417 *ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 527
TR+T IY LKLKS A + F FK VE QFN KIK
Sbjct: 250 DCTRYTWIYPLKLKSQAFEVFKLFKAQVENQFNTKIK 286
>gb|PKU77855.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1360
Score = 99.8 bits (247), Expect = 5e-21
Identities = 44/90 (48%), Positives = 62/90 (68%)
Frame = +3
Query: 261 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 440
CHSC +AK HKLPF S ++ +PL+L+H+D+WGP+P GF YY+SF+D TRFT +
Sbjct: 483 CHSCKQAKTHKLPFESSTHRSTSPLELLHSDVWGPAPQISNSGFLYYVSFIDDYTRFTWL 542
Query: 441 YLLKLKSDATQAFIQFKNLVETQFNKKIKC 530
+ +K KS+ T F+ FK +E + KIKC
Sbjct: 543 FPIKQKSEVTDIFLSFKTYIENLLSTKIKC 572
>gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 330
Score = 97.4 bits (241), Expect = 6e-21
Identities = 46/96 (47%), Positives = 63/96 (65%)
Frame = +3
Query: 243 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 422
NK+ +C +C K H+L F S T APL +I++DLWGPSPI G YY++F+D
Sbjct: 11 NKTFSVCKACCYGKIHRLSFSSSTTTFTAPLQMIYSDLWGPSPIPSSNGSMYYMNFIDAY 70
Query: 423 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIKC 530
+++T IYLL+ KS A FI FKN++E Q + KIKC
Sbjct: 71 SKYTWIYLLQHKSQALTCFIHFKNMIENQLDHKIKC 106
>gb|KYP47251.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 536
Score = 99.0 bits (245), Expect(2) = 7e-21
Identities = 49/95 (51%), Positives = 62/95 (65%)
Frame = +3
Query: 243 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 422
NK +C SC K HKLPF S PL++I++D+WGPSP GF YYI FVD
Sbjct: 397 NKMPFVCSSCCIGKSHKLPFSISKIVYNDPLEMIYSDIWGPSPTPSRDGFRYYIIFVDAF 456
Query: 423 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 527
++FT +Y L+ KS+A FIQFK++VE Q NKKIK
Sbjct: 457 SKFTWLYFLQNKSEALNCFIQFKDMVELQLNKKIK 491
Score = 29.3 bits (64), Expect(2) = 7e-21
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +2
Query: 20 QSIATGTVLLKEKLRNGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKL 199
+S T VLLK L++GLY F ++P +T + P + NI V N
Sbjct: 317 KSQETKMVLLKGHLKDGLYVFDNLRPIHTHTDIVQPLGVVTALYNI--------VSCN-- 366
Query: 200 DIETRHSRLGHAYYQ 244
D+ HSRL H ++
Sbjct: 367 DVSLWHSRLAHCSFK 381