BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00035315
         (1555 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY13665.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) ...   416   e-136
gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymera...   415   e-135
ref|XP_019071858.1| PREDICTED: uncharacterized protein LOC100853...   421   e-135
gb|PNX84365.1| retrovirus-related Pol polyprotein from transposo...   411   e-135
gb|PNX94008.1| retrovirus-related Pol polyprotein from transposo...   417   e-131
gb|OMO88814.1| Reverse transcriptase, RNA-dependent DNA polymera...   407   e-131
ref|XP_018824619.1| PREDICTED: uncharacterized protein LOC108994...   397   e-131
ref|XP_017696115.1| PREDICTED: uncharacterized mitochondrial pro...   393   e-130
gb|PNX74828.1| retrovirus-related Pol polyprotein from transposo...   400   e-130
gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifo...   408   e-130
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   412   e-130
emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]   417   e-130
gb|PNY03100.1| retrovirus-related Pol polyprotein from transposo...   398   e-129
gb|KYP45565.1| Retrovirus-related Pol polyprotein from transposo...   404   e-129
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r...   399   e-128
gb|PNY00469.1| retrovirus-related Pol polyprotein from transposo...   402   e-128
gb|PRQ55089.1| putative RNA-directed DNA polymerase [Rosa chinen...   413   e-128
gb|PNY17451.1| retrovirus-related Pol polyprotein from transposo...   413   e-127
dbj|GAU20491.1| hypothetical protein TSUD_130490 [Trifolium subt...   407   e-127
ref|XP_010532348.2| PREDICTED: uncharacterized protein LOC104808...   416   e-126

>gb|EOY13665.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
          Length = 624

 Score =  416 bits (1069), Expect = e-136
 Identities = 208/390 (53%), Positives = 278/390 (71%), Gaps = 3/390 (0%)
 Frame = -3

Query: 1163 RHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTSRDP 984
            R +  P YL+ Y      +    + T+ + S+P+  +L+   LSP+++SF +S+ST  +P
Sbjct: 107  RPKHIPKYLEAY------QLDSPHQTNANTSHPITKYLSCHQLSPAHRSFTISLSTIFEP 160

Query: 983  LTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKY 804
             +YQ+A+A  HWK A+  ELKAL +NGTW+I  LPS +HA+GCK+V+K K   DG V++Y
Sbjct: 161  NSYQKAVAHSHWKEAMDIELKALEDNGTWSIVQLPSNYHAVGCKWVYKVKLNADGKVERY 220

Query: 803  KARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQE 624
            KARLVAKGY Q EGFDYQETFSPV + T VR+F ++AA  +W L QL ++NAFLNG+L E
Sbjct: 221  KARLVAKGYNQIEGFDYQETFSPVARQTIVRMFFALAAAQNWRLSQLDINNAFLNGELTE 280

Query: 623  DIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDY 444
            ++YM LP G+T K E   S ++VCKLHKS+YGLKQASR WNSK TT +L  GF +S SDY
Sbjct: 281  EVYMELPQGYTFKREYPTSSRLVCKLHKSLYGLKQASRAWNSKLTTSVLKYGFKQSNSDY 340

Query: 443  SLFIRSDSDG-FVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIA 267
            SLF     +G F+ALLVYVDDILI S ++     VK  L  +FK++DLG ++YFLGLEIA
Sbjct: 341  SLFTMKTHNGDFIALLVYVDDILIASSSIQAKNDVKGYLSSEFKLKDLGKVKYFLGLEIA 400

Query: 266  RSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKF--SKDSVLLSDPTSYRRLIGR 93
            RS +GI +CQRKY L +LE+  +LG KP++TP++ N K   S D   L D TSYR+LIG+
Sbjct: 401  RSPEGISICQRKYALYLLEEHGLLGTKPASTPIDYNHKLVKSSDEDKLIDATSYRQLIGK 460

Query: 92   LIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            L+YL+ S+ DIT+ V +LSQ MD P  +HL
Sbjct: 461  LLYLTFSKPDITYAVQVLSQLMDKPGLKHL 490


>gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
            capsularis]
          Length = 666

 Score =  415 bits (1067), Expect = e-135
 Identities = 230/519 (44%), Positives = 311/519 (59%), Gaps = 13/519 (2%)
 Frame = -3

Query: 1523 KGYKVLDLSTHNIFVSRDVTFVENAFPFAXXXXXXXXXXXXXXXXSDDLVIPPAMPDDFS 1344
            KGY++ DLS     VSRDV F EN FPF                     V+P  +PD+ S
Sbjct: 4    KGYRLYDLSNQEYLVSRDVVFQENIFPFQQSRTPPTPSQ----------VLPLPIPDNHS 53

Query: 1343 FHH---------QENPVLSIXXXXXXXXXXXXXXXXXXAHDFXXXXXXXXXXXXXXXXXX 1191
            F+           E P++S                                         
Sbjct: 54   FNSLPSTPIESPNETPIIS----------------------------NDSSLNEISLPSN 85

Query: 1190 XXXXXQRPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSIS---YPLEHHLTYSNLSPSYK 1020
                  R  R+R+ P YLQ Y C+ ++     +S++ S S   YP+ + L+   LS +Y 
Sbjct: 86   EDQPLARSQRNRRPPPYLQYYECSKVRRQPSQSSSTTSGSGTRYPISNFLSTHRLSSTYS 145

Query: 1019 SFALSISTSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFK 840
            +F  +I++  +P +Y EAI   +WK AI +EL AL  N TW+I  LP     +GCK+VFK
Sbjct: 146  TFVSNITSIAEPQSYSEAIKDPNWKAAIDAELHALEANKTWSIVDLPPHKSPVGCKWVFK 205

Query: 839  TKFKPDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLG 660
             K+K  GS+++YKARLVAKGYTQ+EG D+ ETF+PV K+TTVR  L+IA+  +W L+QL 
Sbjct: 206  VKYKSYGSIERYKARLVAKGYTQQEGIDFHETFAPVAKMTTVRCLLAIASTKNWPLYQLD 265

Query: 659  VHNAFLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFL 480
            V NA L+GDL E++YM LPPG T KGE       VCKLHKS+YGL+QAS QW +KF+T L
Sbjct: 266  VQNALLHGDLDEEVYMSLPPGVTSKGE-----NSVCKLHKSLYGLRQASLQWFAKFSTAL 320

Query: 479  LSIGFARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLG 300
            L+ GF +S+SDYSLFI+S    FVA+LVYVDDI+I   N  LI +VK +LQ +F ++DLG
Sbjct: 321  LTYGFVQSRSDYSLFIKSSKTDFVAILVYVDDIVITGNNSKLIDSVKNALQRQFSIKDLG 380

Query: 299  VMRYFLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFS-KDSVLLSD 123
             ++YFLGLE+ARS +GI + QRKYTL++L +T + G +P   P+E N K S  +  LL D
Sbjct: 381  SLKYFLGLEVARSKQGIYLSQRKYTLELLSETGLAGARPLYVPMEQNTKLSAHEGELLKD 440

Query: 122  PTSYRRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEH 6
            P+ YRRLIG+LIYL+++R DI + VH+LSQFM+ P   H
Sbjct: 441  PSPYRRLIGKLIYLTITRPDIMYSVHVLSQFMNQPRHPH 479


>ref|XP_019071858.1| PREDICTED: uncharacterized protein LOC100853407 [Vitis vinifera]
          Length = 869

 Score =  421 bits (1082), Expect = e-135
 Identities = 203/391 (51%), Positives = 286/391 (73%), Gaps = 1/391 (0%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTS 993
            R  R  + P YL DYHC L     H +  S S  YPL   ++Y+ LSPS+++F++SIST 
Sbjct: 419  RSSRVSQPPKYLSDYHCYLASSTPHFD-ISNSTPYPLSDVISYNKLSPSFRAFSISISTI 477

Query: 992  RDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSV 813
             +P TY EA+    W+ A+ +EL+AL  N TW++ TLP G  AIGCK++++ K+  DGS+
Sbjct: 478  TEPTTYAEAVVVPEWQHAMRAELQALESNNTWSLCTLPPGKTAIGCKWLYRVKYHADGSI 537

Query: 812  DKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGD 633
            ++YKARLVAKG+TQ+EG D+ +TFSPV K+ TV++ LS+A++++WHL  L V+NAFL+GD
Sbjct: 538  ERYKARLVAKGFTQQEGVDFFDTFSPVAKMVTVKVLLSLASIYNWHLTHLDVNNAFLHGD 597

Query: 632  LQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSK 453
            L E+++M LPPG+  +GE +     VCKLHKSIYGL+QASRQW +KF+  L+S GF +S 
Sbjct: 598  LSEEVFMHLPPGYHREGEPLLPSNTVCKLHKSIYGLRQASRQWFAKFSGVLISEGFQQSH 657

Query: 452  SDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLE 273
            SDYSLFI++  + F+ALLVYVDDI++ S N      +K SL   FK++DLG ++YFLGLE
Sbjct: 658  SDYSLFIKTAGNDFIALLVYVDDIIVASNNKIAADNLKNSLNKSFKLKDLGNLKYFLGLE 717

Query: 272  IARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSK-DSVLLSDPTSYRRLIG 96
            +ARS+KGI + QRKY L++L +T  LGCKP+ TP++ N + S+ D  LL+DP+ YRRLIG
Sbjct: 718  VARSAKGILINQRKYALELLSETGYLGCKPAKTPMQPNMQLSQDDGELLTDPSMYRRLIG 777

Query: 95   RLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            +LIYL+++R D+T+ V+ LSQF+  P   HL
Sbjct: 778  KLIYLTITRPDLTYSVNKLSQFLSQPRRPHL 808


>gb|PNX84365.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 562

 Score =  411 bits (1056), Expect = e-135
 Identities = 203/393 (51%), Positives = 286/393 (72%), Gaps = 6/393 (1%)
 Frame = -3

Query: 1163 RHRKAPAYLQDYHCNLLKEASHG--NSTSPSIS---YPLEHHLTYSNLSPSYKSFALSIS 999
            R +  P+YLQDYH  +L   SH   ++TSPS S   +P+   ++Y++LS ++K +AL++S
Sbjct: 21   RVKHPPSYLQDYHTKILGNISHSAPDATSPSSSQCKFPISSFISYNHLSSAHKHYALNLS 80

Query: 998  TSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDG 819
            T  +P +Y+EA+   +W+ A+  EL AL++N TW +  LP    AIGCK+VFK K   DG
Sbjct: 81   TLTEPSSYEEAMCDKNWESAVNVELAALLKNKTWDLVKLPPHKKAIGCKWVFKLKLHADG 140

Query: 818  SVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLN 639
            +V++YKARLVAKG+TQ EG DY +TFSPVVK+TTVR FL+IAA  +W L QL V+  FL+
Sbjct: 141  TVERYKARLVAKGFTQTEGIDYTDTFSPVVKMTTVRTFLAIAASQNWPLFQLDVNTTFLH 200

Query: 638  GDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFAR 459
            GDL E++YM+ PPG ++         +VCKL +S+YGLKQASRQWN+K T  LLS G+ +
Sbjct: 201  GDLDEEVYMKPPPGLSLA-----QPDLVCKLQRSLYGLKQASRQWNAKLTETLLSSGYIQ 255

Query: 458  SKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLG 279
            SK+DYSLF ++ S GF A+LVYVDD+++G  +++ I  +K  L +KF ++DLG ++YFLG
Sbjct: 256  SKADYSLFTKNTSTGFTAILVYVDDLVLGGTDINEIHQLKALLDNKFSIKDLGSLKYFLG 315

Query: 278  LEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRL 102
             E+ARS  GI +CQRKYTLD+L+D+ +LG KPS TP++   +  K S   +SDPT+YRRL
Sbjct: 316  FEVARSKTGISLCQRKYTLDLLQDSGLLGTKPSPTPMQPQLQLQKSSGNAISDPTTYRRL 375

Query: 101  IGRLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            IGRL+YL+ SR +I++ V  LSQF+DSPT+ H+
Sbjct: 376  IGRLLYLTHSRPEISYAVSKLSQFLDSPTDTHM 408


>gb|PNX94008.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1063

 Score =  417 bits (1071), Expect = e-131
 Identities = 202/396 (51%), Positives = 277/396 (69%), Gaps = 6/396 (1%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPS-----ISYPLEHHLTYSNLSPSYKSFAL 1008
            R  R    P YLQDYHCNLL  A H + +S S       YP+   +TY NLSP++  + +
Sbjct: 552  RSTRPTTMPGYLQDYHCNLLTPAIHASHSSASNLSSSSKYPISSFMTYQNLSPAHTHYIM 611

Query: 1007 SISTSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFK 828
            ++ST  +P +Y+EA+  ++W  AI +EL A++   TW +  LP+   AIGCK++FK K  
Sbjct: 612  NLSTITEPTSYEEALKDENWTNAIKAELSAMMHTNTWNLAHLPAHKRAIGCKWIFKLKLH 671

Query: 827  PDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNA 648
             DG+V++YKARLVAKG+TQ EG DY ETFSPVVK+TT+RL ++IAA  +W L QL V+ A
Sbjct: 672  ADGTVERYKARLVAKGFTQTEGLDYLETFSPVVKMTTIRLLMAIAASQNWPLFQLDVNTA 731

Query: 647  FLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIG 468
            FL+GDL E++YM+ PPG  +         +VCKL + +YGLKQASRQWN+K T  L+S G
Sbjct: 732  FLHGDLNEEVYMKPPPGLDL-----PHPDLVCKLQRPLYGLKQASRQWNTKLTDTLISSG 786

Query: 467  FARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRY 288
            + +SKSDYSLF +    GF  +LVYVDD+++G  ++D I T+K  L DKF ++DLGV++Y
Sbjct: 787  YIQSKSDYSLFTKQSHAGFTVILVYVDDLVLGGTDMDEITTLKTLLNDKFSIKDLGVLKY 846

Query: 287  FLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELN-QKFSKDSVLLSDPTSY 111
            FL  E+ R+SKGI +CQRKYTLD+L D  +LG KP  TP++ + Q  +    LLSDPT+Y
Sbjct: 847  FLEFEVDRTSKGISLCQRKYTLDLLNDAGLLGAKPCTTPMQPHLQLHNTSGTLLSDPTAY 906

Query: 110  RRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            RRLIGRL+YL+ SR +I++ V  LSQF+ +PT EH+
Sbjct: 907  RRLIGRLLYLTHSRPEISYAVSKLSQFLSAPTNEHM 942


>gb|OMO88814.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
            capsularis]
          Length = 724

 Score =  407 bits (1046), Expect = e-131
 Identities = 206/393 (52%), Positives = 278/393 (70%), Gaps = 4/393 (1%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSIS---YPLEHHLTYSNLSPSYKSFALSI 1002
            R  R+R+ P YLQ Y C+ ++     +S++ S S   YP+ + L+   LS +Y +F  +I
Sbjct: 212  RSQRNRRPPPYLQYYECSKVRRQPSQSSSTTSGSGTRYPISNFLSTHRLSSTYSTFVSNI 271

Query: 1001 STSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPD 822
            ++  +P +Y EAI   +WK AI +EL AL  N TW+I  LP     +GCK+VFK K+K D
Sbjct: 272  TSIAEPKSYSEAIKDPNWKAAIDAELHALEANKTWSIVDLPPHKSPVGCKWVFKVKYKSD 331

Query: 821  GSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFL 642
            GS+++YKARLVAKGYTQ+EG D+ ETF+PV K+TTVR  L+IA+  +W L+QL V NA L
Sbjct: 332  GSIERYKARLVAKGYTQQEGIDFHETFAPVAKMTTVRCLLAIASTKNWPLYQLDVQNALL 391

Query: 641  NGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFA 462
            +GDL E++YM LPPG T KGE       VCKLHKS+YGLKQAS QW +KF+T LL+ GF 
Sbjct: 392  HGDLDEEVYMSLPPGVTSKGE-----NSVCKLHKSLYGLKQASLQWFAKFSTALLTYGFV 446

Query: 461  RSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFL 282
            +S+SDYSLFI+S    FVA+LVYVDDI+I   N  LI +VK +LQ +F ++DLG ++YFL
Sbjct: 447  QSRSDYSLFIKSSKTDFVAILVYVDDIVITGNNSKLIDSVKNALQRQFSIKDLGSLKYFL 506

Query: 281  GLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFS-KDSVLLSDPTSYRR 105
            GLE+ARS +GI + QRKYTL++L +T + G +P   P+E N K S  +  LL DP+ YRR
Sbjct: 507  GLEVARSKQGIYLSQRKYTLELLSETGLAGARPLYVPMEQNTKLSAHEGELLKDPSPYRR 566

Query: 104  LIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEH 6
            LIG+LIYL+++R DI + VH+LSQFM+ P   H
Sbjct: 567  LIGKLIYLTITRPDIMYSVHVLSQFMNQPRHPH 599


>ref|XP_018824619.1| PREDICTED: uncharacterized protein LOC108994005 [Juglans regia]
          Length = 420

 Score =  397 bits (1019), Expect = e-131
 Identities = 194/311 (62%), Positives = 247/311 (79%), Gaps = 1/311 (0%)
 Frame = -3

Query: 932 SELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKYKARLVAKGYTQREGFDY 753
           +EL AL EN TWT+TTLP    AIGC YV+KTK K DGS++++KARLVAKGYTQ+EGFD+
Sbjct: 3   AELHALEENHTWTVTTLPPNKTAIGCIYVYKTKLKSDGSLERHKARLVAKGYTQKEGFDF 62

Query: 752 QETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQEDIYMRLPPGFTIKGETV 573
           QETFSPV K+TTVR+FL+IAA+ +W L Q+ VHNAFL+GDL EDIYM+LPPG+ IK E +
Sbjct: 63  QETFSPVAKLTTVRVFLAIAAIKNWSLTQMDVHNAFLHGDLDEDIYMQLPPGYHIKSEQI 122

Query: 572 DSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDYSLFIRSDSDGFVALLVY 393
               +VCKL+KS+YGLKQASRQW SKF+  L +IGF +SK DYSLF +   +GF+ LLVY
Sbjct: 123 KGENLVCKLNKSLYGLKQASRQWFSKFSNSLTAIGFHQSKFDYSLFTKVSPNGFIPLLVY 182

Query: 392 VDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIARSSKGIQVCQRKYTLDIL 213
           VDDI++GS +   I ++K  LQ KFK++DLG ++YFLGLE+ARSS GI  CQRKYTL+IL
Sbjct: 183 VDDIIVGSDSQREIDSLKSYLQSKFKIKDLGPLKYFLGLEVARSSLGINFCQRKYTLEIL 242

Query: 212 EDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRLIGRLIYLSVSRLDITFGVHLLS 36
           ED+ +LG K  +TP+ELN K S  +  +  DPT+YRRLIGRLIYL+++R DIT+ V +LS
Sbjct: 243 EDSGLLGTKTVSTPIELNHKLSHTTEEIFQDPTTYRRLIGRLIYLTITRPDITYVVSVLS 302

Query: 35  QFMDSPTEEHL 3
           QFMD P + H+
Sbjct: 303 QFMDRPLQSHM 313


>ref|XP_017696115.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
           [Phoenix dactylifera]
          Length = 395

 Score =  393 bits (1010), Expect = e-130
 Identities = 191/322 (59%), Positives = 251/322 (77%), Gaps = 1/322 (0%)
 Frame = -3

Query: 965 IASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKYKARLVA 786
           +A  HW  A+ SEL AL ENGTWT+T LP G  A+GCKYV+K K    G++D+YKARLVA
Sbjct: 1   MAHKHWCDAMNSELNALEENGTWTVTELPLGKKAVGCKYVYKVKLTSTGAIDRYKARLVA 60

Query: 785 KGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQEDIYMRL 606
           K YTQREG +YQETFS V KI+ VR+FL+ AA+  W L+Q+ VHNAFL+ +L E+IYM L
Sbjct: 61  KEYTQREGLEYQETFSSVAKISIVRVFLAFAAIRGWSLYQMDVHNAFLHENLNEEIYMEL 120

Query: 605 PPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDYSLFIRS 426
           PPG+ +KGE++ + KMVCKLHKS+YGLKQASRQW SKF++ L++ GF +S SDY LF + 
Sbjct: 121 PPGYQLKGESLPNTKMVCKLHKSLYGLKQASRQWYSKFSSSLIAFGFQQSTSDYFLFTKY 180

Query: 425 DSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIARSSKGIQ 246
           D + F ALLVYVDDI++G  ++  I +VK+ LQ +FK++DLG+++YFLGL+IAR+S GI 
Sbjct: 181 DGNNFTALLVYVDDIIVGGNSIASIDSVKMYLQSQFKIKDLGLLKYFLGLKIARTSDGIH 240

Query: 245 VCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDSV-LLSDPTSYRRLIGRLIYLSVSR 69
           +CQRKYTL+ILED  +LGCK  +TP+ELN K    S  +L +  SYRRLIGRLIYL++SR
Sbjct: 241 LCQRKYTLEILEDAGLLGCKAVHTPIELNHKLCHTSQDMLQNVMSYRRLIGRLIYLTISR 300

Query: 68  LDITFGVHLLSQFMDSPTEEHL 3
            DIT+ V++LSQFMD  ++ +L
Sbjct: 301 SDITYVVNVLSQFMDKLSQTYL 322


>gb|PNX74828.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 612

 Score =  400 bits (1029), Expect = e-130
 Identities = 205/382 (53%), Positives = 267/382 (69%), Gaps = 1/382 (0%)
 Frame = -3

Query: 1148 PAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTSRDPLTYQE 969
            P+YLQDYHC  +K  ++ N + P+  YPL   L+Y N +P YKSF  SIS + +P T+ +
Sbjct: 50   PSYLQDYHCYSIKGCANNNISHPN--YPLSSVLSYDNCAPEYKSFCCSISATIEPKTFNQ 107

Query: 968  AIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKYKARLV 789
            A   D W++A+ +EL AL EN TW+I  LP G + IGCK+V+K K+  +GS+++YKARLV
Sbjct: 108  ASKLDCWRKAMDAELLALDENKTWSIVDLPHGKNPIGCKWVYKIKYHANGSIERYKARLV 167

Query: 788  AKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQEDIYMR 609
            AKGYTQ EG DY +TFSPV KITTVR  L++A++  W L QL V+NAFL+GDL E++YM 
Sbjct: 168  AKGYTQTEGIDYFDTFSPVAKITTVRFLLALASIKGWDLEQLDVNNAFLHGDLNEEVYMS 227

Query: 608  LPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDYSLFIR 429
            LPPG+     +      VCKLHKS+YGLKQASRQW SK +  L+S+G+ +S SD+SL+I+
Sbjct: 228  LPPGY----PSNTGFNKVCKLHKSLYGLKQASRQWYSKLSAALISLGYEQSVSDHSLYIK 283

Query: 428  SDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIARSSKGI 249
            S+   F ALLVYVDDI++   +   I+ VK  L  KFK++DLG +RYFLG EIARS KGI
Sbjct: 284  SNDSEFTALLVYVDDIILAGNSSQEIQDVKHFLDQKFKIKDLGKLRYFLGFEIARSPKGI 343

Query: 248  QVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSK-DSVLLSDPTSYRRLIGRLIYLSVS 72
             V QRKY L++L+DT  L  KPS  P     K S  D  LL DP+SYRRLIGRL+YL+ +
Sbjct: 344  FVNQRKYALELLQDTGFLATKPSKIPFNPTTKLSSTDGALLEDPSSYRRLIGRLLYLTNT 403

Query: 71   RLDITFGVHLLSQFMDSPTEEH 6
            R DI+F V  LSQF+  P   H
Sbjct: 404  RPDISFSVQHLSQFVSKPLVPH 425


>gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifolium pratense]
          Length = 865

 Score =  408 bits (1049), Expect = e-130
 Identities = 222/523 (42%), Positives = 304/523 (58%), Gaps = 8/523 (1%)
 Frame = -3

Query: 1550 VFLGYPVGVKGYKVLDLSTHNIFVSRDVTFVENAFP-FAXXXXXXXXXXXXXXXXSDDLV 1374
            +F+GYP G KGYK+ D  T   FVSRDV F E  FP                    DDL 
Sbjct: 174  IFVGYPTGQKGYKIYDPETKTFFVSRDVKFCETNFPSIPNTSEPNLISSHPSYEAIDDLP 233

Query: 1373 IPPA-----MPDDFSFHHQENPVLSIXXXXXXXXXXXXXXXXXXAHDFXXXXXXXXXXXX 1209
             P +        D    H+ N    I                   H              
Sbjct: 234  SPTSSHHQSQQTDIPSTHEPNSPSHITTETSSAASPIVEPTPLTTHT------------- 280

Query: 1208 XXXXXXXXXXXQRPMRHRKAPAYLQDYHCNLLKEASHGNSTSPS-ISYPLEHHLTYSNLS 1032
                       ++ +R +  P +  DYH +     +    TS S   YPL H+L+YS +S
Sbjct: 281  TDPPTPFIPQVRKSVRDKHPPIWHNDYHMSTQVNKTPSEPTSGSGTRYPLSHYLSYSRIS 340

Query: 1031 PSYKSFALSISTSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCK 852
             S  +F  +I+  R+P +Y +A+    W+ A+ +EL+AL +N TW++  LPSGH  IGCK
Sbjct: 341  SSNCAFLANITAHREPQSYDQAVHDPLWQDAMNAELEALEQNNTWSLVPLPSGHKPIGCK 400

Query: 851  YVFKTKFKPDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHL 672
            +V+K K+K DG++++YKARLVAKGYTQ EG DYQETFSP  K+TT+R  L++AA  +W +
Sbjct: 401  WVYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETFSPTAKVTTLRCLLTVAAARNWFI 460

Query: 671  HQLGVHNAFLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKF 492
            HQL V NAFL+GDL E +YM  PPG   +GE V     VC+L+KS+YGLKQASR W S F
Sbjct: 461  HQLDVQNAFLHGDLHELVYMEPPPGLRRQGENV-----VCRLNKSLYGLKQASRNWFSTF 515

Query: 491  TTFLLSIGFARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKV 312
            +  +   G+ +SK+DYSLF +S    F A+L+YVDDIL+   +L  +K +K  L  +F++
Sbjct: 516  SEVIQKAGYQQSKADYSLFTKSQGTSFTAVLIYVDDILLTGNDLQEMKRLKEFLLKRFRI 575

Query: 311  RDLGVMRYFLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFS-KDSV 135
            +DLG ++YFLG+E +RS KGI + QRKY LDIL+D+ + G +P   P+E N K +  D V
Sbjct: 576  KDLGNLKYFLGIEFSRSKKGIFMSQRKYALDILQDSGLTGARPDKFPMEQNLKLTPTDGV 635

Query: 134  LLSDPTSYRRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEH 6
            +L+DPT YRRL+GRLIYL+V+R DI + V  LSQFM  P + H
Sbjct: 636  VLNDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPH 678


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  412 bits (1059), Expect = e-130
 Identities = 234/517 (45%), Positives = 306/517 (59%), Gaps = 2/517 (0%)
 Frame = -3

Query: 1550 VFLGYPVGVKGYKVLDLSTHNIFVSRDVTFVENAFPFAXXXXXXXXXXXXXXXXSDDLVI 1371
            V LGY  GVKGY + DL +H  F+SR+V F E  FPF                    +  
Sbjct: 335  VLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPIT---IQT 391

Query: 1370 PPAMPDDFSFHHQENPVLSIXXXXXXXXXXXXXXXXXXAHDFXXXXXXXXXXXXXXXXXX 1191
            P + P D   H   +P  S                    H                    
Sbjct: 392  PISSPYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPSRHS------------------- 432

Query: 1190 XXXXXQRPMRHRKAPAYLQDYHCNLLKEASHGNSTSP-SISYPLEHHLTYSNLSPSYKSF 1014
                     R R+ P+YL+DYHC+LL      NS S  S  + +   LTY   SPSYK F
Sbjct: 433  --------TRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPHSISSTLTYDFCSPSYKQF 484

Query: 1013 ALSISTSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTK 834
             LS+ST+ +P TY +A   D W  A+ +EL AL  N TW+I  LPSG   IGCK+V+K K
Sbjct: 485  CLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIK 544

Query: 833  FKPDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVH 654
            +  DGS+++YKARLVAKGY+Q EG DY +T+SPV K+TTVR+ L++ A+  W L QL V+
Sbjct: 545  YLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVN 604

Query: 653  NAFLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLS 474
            NAFL+GDL E++YM LPPG ++   +  + K VCKLHKSIYGLKQASRQW SK ++ L+S
Sbjct: 605  NAFLHGDLHEEVYMTLPPGLSVPSSSNTAPK-VCKLHKSIYGLKQASRQWYSKLSSALIS 663

Query: 473  IGFARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVM 294
            +G++ S +D+SLFI+S S  F ALLVYVDDI++   +   I  +K  L   FK++DLG +
Sbjct: 664  MGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNL 723

Query: 293  RYFLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKD-SVLLSDPT 117
            RYFLGLEIARS+KGI + QRKYTL+ILED   L  KPS+TP   + K   D     +D T
Sbjct: 724  RYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDET 783

Query: 116  SYRRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEH 6
            +YRRLIGRL+YL+ +R DI++ V  LSQF+  P + H
Sbjct: 784  AYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIH 820


>emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]
          Length = 1243

 Score =  417 bits (1071), Expect = e-130
 Identities = 210/391 (53%), Positives = 284/391 (72%), Gaps = 1/391 (0%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTS 993
            R  R  K P+YL+DYHC+L+   +H  + S S  +P++H L+Y  LSPSYK F+LS+S  
Sbjct: 690  RXTRVSKQPSYLKDYHCSLINSVAHVETHSTS--HPIQHFLSYDKLSPSYKLFSLSVSII 747

Query: 992  RDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSV 813
             +P ++ +A     W+ A+  EL+AL EN TW+I +L  G H +GCK+V+K K K DG++
Sbjct: 748  SEPSSFAKAAEIPEWRAAMDCELEALEENKTWSIVSLXVGKHPVGCKWVYKIKHKADGTI 807

Query: 812  DKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGD 633
            ++YKARLVAKGYTQREG DY +TFSPV K+ TV+L L+IAA+  WHL QL V+NAFL+GD
Sbjct: 808  ERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGD 867

Query: 632  LQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSK 453
            L E++YM+LPPG+  KGE++ S   VC LHKS+YGLKQASRQW SKF+T ++ +GF++S 
Sbjct: 868  LNEEVYMKLPPGYNRKGESLPS-NAVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSP 926

Query: 452  SDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLE 273
            SD+SLFI++    F+ALLVYVDD++I S N   I  +K  L   FK++DLG ++YFLGLE
Sbjct: 927  SDHSLFIKNVDGLFIALLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLE 986

Query: 272  IARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKD-SVLLSDPTSYRRLIG 96
            IA+SS GI V QRKY LD+L D   LGCK ++TP+E N K S D  V L D + YRRL+G
Sbjct: 987  IAKSSTGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRLLG 1046

Query: 95   RLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            +L+YL+++R DI++ V  LSQF+  P   HL
Sbjct: 1047 KLLYLTLTRPDISYVVGRLSQFISRPKLPHL 1077


>gb|PNY03100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 629

 Score =  398 bits (1022), Expect = e-129
 Identities = 191/396 (48%), Positives = 277/396 (69%), Gaps = 6/396 (1%)
 Frame = -3

Query: 1172 RPMRHRKAPAYL-QDYHCNL----LKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFAL 1008
            R  R+   P +L ++Y+CNL    L ++S    +S S  YP+  +++Y N+S ++  F  
Sbjct: 42   RSTRNSHPPPFLTENYYCNLTSATLPDSSAATLSSSSCKYPISSYVSYQNISSAHNHFLF 101

Query: 1007 SISTSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFK 828
            ++ST  +P  Y++A+  ++WK AI +EL AL +N TW +  LP   HAIGCK+VFK K  
Sbjct: 102  NLSTIPEPTCYEKAVCDENWKTAINAELSALEKNNTWKLVPLPLHKHAIGCKWVFKLKLH 161

Query: 827  PDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNA 648
             DG++++YKARLVAKGYTQ EG DY +TFSPVVK+TT+R+ L++AA  +W L+QL V+ A
Sbjct: 162  ADGTIERYKARLVAKGYTQTEGIDYMDTFSPVVKMTTIRVLLAVAAAQNWPLYQLDVNTA 221

Query: 647  FLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIG 468
            FL+GDL E++YM+ PPG ++         +VCKL +S+YGLKQASRQWN+K T  L + G
Sbjct: 222  FLHGDLNEEVYMQPPPGLSL-----PHSNLVCKLQRSLYGLKQASRQWNTKLTETLTASG 276

Query: 467  FARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRY 288
            + +SKSDYSLF +  S G   +LVYVDD+++G  + + I+ +K  L +KF ++DLG ++Y
Sbjct: 277  YVQSKSDYSLFTKQASSGLTIILVYVDDLVLGGTDSNEIQNIKALLDEKFSIKDLGYLKY 336

Query: 287  FLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSY 111
            FLG E+AR+  GI +CQRKY LD+++D  +LG KP +TP++   +  K S   +S+PTSY
Sbjct: 337  FLGFEVARTQAGISLCQRKYALDLIQDAGLLGAKPCSTPMQPQLQLHKSSGQAISEPTSY 396

Query: 110  RRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            RRLIGRL+YL+ SR +I + V  LSQF+D PT EH+
Sbjct: 397  RRLIGRLLYLTHSRPEIAYAVSKLSQFLDKPTNEHM 432


>gb|KYP45565.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 818

 Score =  404 bits (1037), Expect = e-129
 Identities = 202/391 (51%), Positives = 272/391 (69%), Gaps = 1/391 (0%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTS 993
            R  R    P YL DYHC       +  + S   +YP++++L YS LS S++ +   IS  
Sbjct: 250  RSDRATNPPRYLSDYHC-------YNVTDSAITAYPIQNYLDYSKLSNSHRHYICQISEH 302

Query: 992  RDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSV 813
             +P TY +AI    WK+AI+ EL A+  N TW +  LP     I CK++FK K   DG+V
Sbjct: 303  FEPQTYAQAIKYTSWKQAISDELVAMEVNHTWDVVPLPPEKKPISCKWLFKLKLNSDGTV 362

Query: 812  DKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGD 633
             K+KARLVA+G+TQ+ G D+QETFSPV KITT+RL LS+AA HHWHL QL ++NAFLNG+
Sbjct: 363  AKHKARLVARGFTQQYGLDFQETFSPVAKITTLRLLLSLAASHHWHLAQLDINNAFLNGN 422

Query: 632  LQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSK 453
            L+E+I+M++P G+T    +     +VCKL+KSIYGLKQASR W +KF+T LLS G+ +SK
Sbjct: 423  LEEEIFMQIPQGYTHNIVSTIPTPLVCKLNKSIYGLKQASRSWFTKFSTILLSYGYKQSK 482

Query: 452  SDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLE 273
             DYSLF +     F+A+LVYVDDI++ SP+ D+I   K  LQ  F+++DLG +++FLGLE
Sbjct: 483  FDYSLFTKGTKSNFIAVLVYVDDIVLASPSNDVISQTKTLLQKYFRLKDLGDLKFFLGLE 542

Query: 272  IARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRLIG 96
            +++S +GI +CQR YT+ ILED  MLGCKPS+ P+E N K   DS   LSDP  YRRLIG
Sbjct: 543  LSKSKEGIFMCQRHYTMSILEDCGMLGCKPSSLPMESNLKLKADSGTKLSDPGKYRRLIG 602

Query: 95   RLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            RL+YL+VSR DI F +H LSQF+ +P  +H+
Sbjct: 603  RLLYLTVSRHDICFAMHKLSQFVSNPYTDHM 633


>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
            from transposon TNT 1-94 [Gossypium raimondii]
          Length = 683

 Score =  399 bits (1026), Expect = e-128
 Identities = 205/394 (52%), Positives = 274/394 (69%), Gaps = 4/394 (1%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDY-HCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSIST 996
            RP R+R+ P+YLQDY H  L    +H     P   + + + ++Y NLSP +  F L+IS 
Sbjct: 116  RPQRNRRPPSYLQDYQHYQLPAATNH-----PGTPHSIFNCISYHNLSPQHLHFTLAISA 170

Query: 995  SRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGS 816
            S +P TY++A    HW  A+ +E+ AL +N TWT+TTLP G    GCK+VF+ K + DGS
Sbjct: 171  SIEPKTYKQASKFTHWNEAMQAEINALEQNNTWTMTTLPPGKTPXGCKWVFRVKHRADGS 230

Query: 815  VDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNG 636
             ++YKARLVAKGYTQ  G DY +TFSPV KITTVRL L++A   HWH+ QL V+NAFL+G
Sbjct: 231  TERYKARLVAKGYTQI-GVDYFDTFSPVAKITTVRLLLALATSRHWHIQQLDVNNAFLHG 289

Query: 635  DLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARS 456
            DL ED+YM  PPGF+      DS K VCKLHKSIYGLKQASRQW SK TT L+S+G+ +S
Sbjct: 290  DLNEDVYMLPPPGFSH-----DSTK-VCKLHKSIYGLKQASRQWFSKLTTALISLGYIQS 343

Query: 455  KSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGL 276
             +D+S+F +  S+ F  LL+YVDDI++   +   I  VK  L   F+++DLG ++YFLGL
Sbjct: 344  TADHSMFTKKHSEDFTVLLIYVDDIILTGTSSPEIMKVKQFLDTTFRIKDLGDLKYFLGL 403

Query: 275  EIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKF---SKDSVLLSDPTSYRR 105
            E+AR+S+GI + QRKY L+IL+++  + CKP+ TP+     +   S D  LLSD TSYR+
Sbjct: 404  EVARTSQGIHISQRKYALEILQESGFIECKPAKTPMATKSVYKLTSTDGELLSDITSYRQ 463

Query: 104  LIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            L+G+L+YL+ +RLD+TF V  LSQFMD PT  HL
Sbjct: 464  LVGKLLYLTSTRLDLTFAVQQLSQFMDKPTTNHL 497


>gb|PNY00469.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 778

 Score =  402 bits (1032), Expect = e-128
 Identities = 200/387 (51%), Positives = 277/387 (71%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1163 RHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTSRDP 984
            R  + P+YLQDYHCN+    +  N  S +I +PL   L+Y+  SP+YK F  SIS++ +P
Sbjct: 213  RVTRPPSYLQDYHCNIKSGCT--NQVSSNIVHPLSSVLSYNTCSPAYKLFCCSISSTIEP 270

Query: 983  LTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKY 804
             TY +A   D WK+A+ +E+ AL  N TWT+  LP G   IGCK+V+K K+  +G++++Y
Sbjct: 271  TTYNQASKFDCWKKAMDAEITALELNKTWTVVDLPCGKVPIGCKWVYKIKYHANGTIERY 330

Query: 803  KARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQE 624
            KARLVAKGYTQ EG DY +TFSPV K+TTVR+ L++AA+  WHL QL V+NAFL+GDL E
Sbjct: 331  KARLVAKGYTQMEGVDYFDTFSPVAKMTTVRVLLAVAAVRGWHLEQLDVNNAFLHGDLHE 390

Query: 623  DIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDY 444
            ++YM LPPG+        +   VCKL+KS+YGLKQASRQW SK +  L+S+G+  S++D+
Sbjct: 391  EVYMSLPPGYDA------TPSKVCKLNKSLYGLKQASRQWYSKLSAALISLGYQASQADH 444

Query: 443  SLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIAR 264
            SL+++S    F ALLVYVDDI++   +++ IK+VK+ L  +FK++DLG +R+FLGLEIAR
Sbjct: 445  SLYVKSHGTSFTALLVYVDDIVLAGTSIEEIKSVKLFLDQQFKIKDLGPLRFFLGLEIAR 504

Query: 263  SSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFS-KDSVLLSDPTSYRRLIGRLI 87
            SS GI + QRKYTL++LEDT  LG KP+  P++ + K S  D V   DP+ YRRLIGRL+
Sbjct: 505  SSSGIFLNQRKYTLELLEDTGFLGSKPATVPLDPHTKLSATDGVPFDDPSGYRRLIGRLL 564

Query: 86   YLSVSRLDITFGVHLLSQFMDSPTEEH 6
            YL+ +R DI+F V  LSQ++ +P   H
Sbjct: 565  YLTHTRPDISFAVQHLSQYVSTPLVPH 591


>gb|PRQ55089.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1285

 Score =  413 bits (1061), Expect = e-128
 Identities = 229/541 (42%), Positives = 314/541 (58%), Gaps = 24/541 (4%)
 Frame = -3

Query: 1553 CVFLGYPVGVKGYKVLDLSTHN-------IFVSRDVTFVENAFPFAXXXXXXXXXXXXXX 1395
            CVFLGYP G KGYKV +L+T         IF      F +N+  F               
Sbjct: 559  CVFLGYPHGQKGYKVYNLTTKKSLVSRDVIFFENAFPFPKNSESFPSQNTDLFPSIPRLA 618

Query: 1394 XXSDDLV--IPPAMPDDFSFHHQENPVLS-----IXXXXXXXXXXXXXXXXXXAHDFXXX 1236
               +  +  IPP+ P      H   P++S                        + D    
Sbjct: 619  HYDNPSIPKIPPSSPT-----HHSPPMISPNPQSSAEQYLNSPSKSLSSTDPVSSDITLP 673

Query: 1235 XXXXXXXXXXXXXXXXXXXXQRPMRHRKA---PAYLQDYHCN------LLKEASHGNSTS 1083
                                 RP +  +A   P  LQD+H +      L   +S    T+
Sbjct: 674  NLDTISSDHIPSLSPPEQTPPRPRKSTRATKLPTALQDFHIDAALPTRLAPSSSSNEVTT 733

Query: 1082 PSISYPLEHHLTYSNLSPSYKSFALSISTSRDPLTYQEAIASDHWKRAIASELKALIENG 903
            P  ++ L H L+Y+NLS  +++F  +I+  R+P ++ +A+    W+ A+  E++AL +N 
Sbjct: 734  PGTAHSLSHVLSYANLSSPHRTFTANITLQREPTSFSQAVKDPKWREAMRLEVQALQDNK 793

Query: 902  TWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKI 723
            TW++   P+    IGCK+V+K K+ PDG++++YKARLVAKGY+Q EG DY+ETF+PV K+
Sbjct: 794  TWSLVPPPAHKRPIGCKWVYKIKYNPDGTIERYKARLVAKGYSQVEGLDYRETFAPVAKL 853

Query: 722  TTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQEDIYMRLPPGFTIKGETVDSRKMVCKLH 543
            TTVR+ LS+AA  +WHLHQL V+NAFLNGDL ED+YM LPPGF  KGE       VCKLH
Sbjct: 854  TTVRVLLSLAAQQNWHLHQLDVNNAFLNGDLHEDVYMHLPPGFERKGE-----HKVCKLH 908

Query: 542  KSIYGLKQASRQWNSKFTTFLLSIGFARSKSDYSLFIRSDSDGFVALLVYVDDILIGSPN 363
            KS+YGL+QAS+QW  K ++ L S GF +S SDYS+F+RS    F ALLVYVDD+++   N
Sbjct: 909  KSLYGLRQASKQWFLKLSSALKSAGFKQSWSDYSMFVRSHQGTFTALLVYVDDVILAGNN 968

Query: 362  LDLIKTVKISLQDKFKVRDLGVMRYFLGLEIARSSKGIQVCQRKYTLDILEDTCMLGCKP 183
            LD I   K  L   FK++D+G ++YFLGLE+ARS  GI + QRKY L+ILEDT  LG KP
Sbjct: 969  LDDIIRTKSFLSSHFKLKDMGQLKYFLGLEVARSKHGIALSQRKYALEILEDTGFLGAKP 1028

Query: 182  SNTPVELNQKFS-KDSVLLSDPTSYRRLIGRLIYLSVSRLDITFGVHLLSQFMDSPTEEH 6
            S  P+E N   + +D  LL D + YRRL+GRLIY +++R D+ + VH+LSQFMD P + H
Sbjct: 1029 SRFPLEQNIILTQEDGRLLEDASQYRRLVGRLIYQTITRPDLVYAVHILSQFMDKPRQPH 1088

Query: 5    L 3
            L
Sbjct: 1089 L 1089


>gb|PNY17451.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1425

 Score =  413 bits (1061), Expect = e-127
 Identities = 205/393 (52%), Positives = 285/393 (72%), Gaps = 6/393 (1%)
 Frame = -3

Query: 1163 RHRKAPAYLQDYHCNLLKEASHG--NSTSPSIS---YPLEHHLTYSNLSPSYKSFALSIS 999
            R +  P+YLQDYH  +L   SH   +ST PS S   +P+   ++Y +LSP++K +AL+IS
Sbjct: 842  RVKHPPSYLQDYHTKILGNISHSASDSTHPSSSQCKFPISSFISYDHLSPAHKHYALNIS 901

Query: 998  TSRDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDG 819
            T  +P +Y+EA+  ++WK A+  EL AL++N TW +  LP    AIGCK+VFK K   DG
Sbjct: 902  TLTEPSSYEEAMCDENWKSAVNVELTALLKNNTWDMVKLPPHKKAIGCKWVFKLKLHADG 961

Query: 818  SVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLN 639
            +V+++KARLVAKG+TQ EG DY +TFSPVVK+TTVR F++IAA  +W L QL V+ AFL+
Sbjct: 962  TVERHKARLVAKGFTQTEGIDYIDTFSPVVKMTTVRTFMAIAASQNWPLFQLDVNTAFLH 1021

Query: 638  GDLQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFAR 459
            GDL E++YM+ PPG  +         +VCKL +S+YGLKQASRQWN K T  LLS G+ +
Sbjct: 1022 GDLNEEVYMKPPPGLPLA-----HPDLVCKLQRSLYGLKQASRQWNVKLTETLLSSGYIQ 1076

Query: 458  SKSDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLG 279
            SK+DYSLF ++ S GF A+LVYVDD+++G  ++D I  +K  L  KF ++DLG ++YFLG
Sbjct: 1077 SKADYSLFTKNTSTGFTAILVYVDDLVLGGTDIDEIHQLKALLDTKFSIKDLGSLKYFLG 1136

Query: 278  LEIARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRL 102
             E+ARS  GI +CQRKYTLD+L+D+ +LG KP+ TP++ + +  K S   +SDPT+YRRL
Sbjct: 1137 FEVARSKTGISLCQRKYTLDLLQDSGLLGTKPTPTPMQPHLQLQKSSGNAISDPTTYRRL 1196

Query: 101  IGRLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            IGRL+YL+ SR +I++ V  LSQF+DSPT+ H+
Sbjct: 1197 IGRLLYLTHSRPEISYAVSKLSQFLDSPTDAHM 1229


>dbj|GAU20491.1| hypothetical protein TSUD_130490 [Trifolium subterraneum]
          Length = 1127

 Score =  407 bits (1045), Expect = e-127
 Identities = 199/388 (51%), Positives = 275/388 (70%), Gaps = 6/388 (1%)
 Frame = -3

Query: 1148 PAYLQDYHCNLLKEASHG-----NSTSPSISYPLEHHLTYSNLSPSYKSFALSISTSRDP 984
            P YLQDYHCNLL   SH      +++S    YPL   L+Y +LS ++  F  ++ST  +P
Sbjct: 598  PGYLQDYHCNLLTTPSHDLVPPTSTSSSQCKYPLSSFLSYKDLSSTHTHFVCNLSTLTEP 657

Query: 983  LTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSVDKY 804
             +Y+EA+  + WK AI+SE+ AL++N TW++TTLPS   AIGCK+VFK K   DGS++++
Sbjct: 658  TSYEEAMHDEQWKNAISSEMSALMKNNTWSMTTLPSHKKAIGCKWVFKLKLHVDGSIERH 717

Query: 803  KARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGDLQE 624
            KARLVAKG+TQ EG DY +TFS VVK+TTVR F++IAA   W L QL V+ AFL+GDL E
Sbjct: 718  KARLVAKGFTQTEGLDYTDTFSLVVKMTTVRTFMAIAAAQQWPLFQLDVNTAFLHGDLNE 777

Query: 623  DIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSKSDY 444
            ++YM+ PPG  +     D   +VCKL +S+YGLKQASRQWN+K T  L S G+ +SK+DY
Sbjct: 778  EVYMKPPPGLVL-----DHPDLVCKLQRSLYGLKQASRQWNAKLTETLTSSGYVQSKADY 832

Query: 443  SLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLEIAR 264
            SLF +  + GF A+LVYVDD+++G  ++  I  +K  L   F ++DLG ++YFLG E+AR
Sbjct: 833  SLFTKQSTTGFTAILVYVDDLVLGGTDIIEINHIKSLLDATFSIKDLGHLKYFLGFEVAR 892

Query: 263  SSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRLIGRLI 87
            S  GI +CQRKY LD+L+D  +L  KP +TP+E   +  K+S   + DPT+YRRLIGRL+
Sbjct: 893  SHNGISLCQRKYVLDLLQDAGLLAAKPCSTPMEPRLQLHKNSGTSIYDPTAYRRLIGRLL 952

Query: 86   YLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            YL+ +R +I++ V  LSQF+DSPT+ H+
Sbjct: 953  YLTHTRPEISYAVSKLSQFLDSPTDAHM 980


>ref|XP_010532348.2| PREDICTED: uncharacterized protein LOC104808371 [Tarenaya
            hassleriana]
          Length = 1790

 Score =  416 bits (1069), Expect = e-126
 Identities = 204/391 (52%), Positives = 277/391 (70%), Gaps = 1/391 (0%)
 Frame = -3

Query: 1172 RPMRHRKAPAYLQDYHCNLLKEASHGNSTSPSISYPLEHHLTYSNLSPSYKSFALSISTS 993
            RP R+ KAP YL  Y+CN      H +    S  YP+   LTY ++SP YK F L++ T 
Sbjct: 695  RPKRNVKAPGYLSQYYCN---STHHDSQAIFSTPYPMSSVLTYDHISPEYKQFLLNLHTD 751

Query: 992  RDPLTYQEAIASDHWKRAIASELKALIENGTWTITTLPSGHHAIGCKYVFKTKFKPDGSV 813
             +P +++EAI S  W +A+ +E++AL +NGTW+I +LP     +GCK+V+K K   DG+V
Sbjct: 752  IEPKSFKEAILSPQWTQAMETEIQALTDNGTWSIVSLPQSKKPVGCKWVYKVKRNSDGTV 811

Query: 812  DKYKARLVAKGYTQREGFDYQETFSPVVKITTVRLFLSIAAMHHWHLHQLGVHNAFLNGD 633
            ++YKARLVAKG+TQ+EG DY++TFSPV K+ TV+L L++AA+ +W L Q+ V NAFL+GD
Sbjct: 812  ERYKARLVAKGFTQQEGIDYEDTFSPVAKLVTVKLLLALAAIKNWSLTQMDVTNAFLHGD 871

Query: 632  LQEDIYMRLPPGFTIKGETVDSRKMVCKLHKSIYGLKQASRQWNSKFTTFLLSIGFARSK 453
            L EDIYM LPPG+T        +  VCKL KS+YGLKQASRQW  KF++ L++ GF +S+
Sbjct: 872  LDEDIYMSLPPGYTPPVGQNLPKNAVCKLQKSLYGLKQASRQWYRKFSSVLINSGFTQSQ 931

Query: 452  SDYSLFIRSDSDGFVALLVYVDDILIGSPNLDLIKTVKISLQDKFKVRDLGVMRYFLGLE 273
            +D++LF++   D F ALLVYVDDI+I   +   ++ +K +L   F ++DLG +RYFLGLE
Sbjct: 932  ADHTLFVKKQGDVFTALLVYVDDIVIAGNDDRAVQNLKDTLNQHFNIKDLGPLRYFLGLE 991

Query: 272  IARSSKGIQVCQRKYTLDILEDTCMLGCKPSNTPVELNQKFSKDS-VLLSDPTSYRRLIG 96
            IARSSKGI +CQRKY L++L DT + GCK  + P++ N     DS   LSDPT YR LIG
Sbjct: 992  IARSSKGIALCQRKYCLELLNDTGLSGCKSVSVPMDPNVHLRHDSGQFLSDPTPYRALIG 1051

Query: 95   RLIYLSVSRLDITFGVHLLSQFMDSPTEEHL 3
            RL+YL+++R DITF VH LSQF+  PTEEHL
Sbjct: 1052 RLLYLTITRPDITFPVHKLSQFLAKPTEEHL 1082