BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00034146
         (1248 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposo...   169   2e-47
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]   156   1e-44
gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]              162   2e-41
gb|AMY96445.1| gag/pol protein [Momordica dioica]                     140   2e-32
gb|PON89309.1| hypothetical protein TorRG33x02_148520, partial [...   129   3e-30
gb|EXC14254.1| hypothetical protein L484_021752 [Morus notabilis]     128   2e-29
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   123   2e-26
gb|EXB73693.1| hypothetical protein L484_026856 [Morus notabilis]     113   1e-25
gb|ONK56286.1| uncharacterized protein A4U43_C10F6140 [Asparagus...   111   1e-24
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   117   2e-24
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo...   109   5e-22
ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207...   107   2e-21
gb|PKI51479.1| hypothetical protein CRG98_028190 [Punica granatum]    103   3e-20
gb|KYP48511.1| Retrovirus-related Pol polyprotein from transposo...   102   5e-20
gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposo...   100   2e-19
gb|AAD12994.1| gag-pol polyprotein [Zea mays]                         101   2e-19
gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Tri...   100   3e-19
gb|PKI48303.1| hypothetical protein CRG98_031305, partial [Punic...    97   3e-19
gb|OIT30292.1| hypothetical protein A4A49_38570 [Nicotiana atten...    99   5e-19
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   100   6e-19

>gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 443

 Score =  169 bits (428), Expect(2) = 2e-47
 Identities = 82/145 (56%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR-KYDLLVLESCLVAKDSSTWVVDSGAINHVCSS 384
           CFHC  EGHWKR+C K+L ++K+ K++ K DL VLE CLV  D+STW++DSGA NHVC S
Sbjct: 159 CFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLPVLEICLVEGDTSTWIIDSGATNHVCFS 218

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIRD-KILILNDVFYIPGFRRNLIS 207
           LQ LSSY ELADG + ++VGNGA V+AKA+G ++L+ R+ K L+LN+V++IP  RRNLIS
Sbjct: 219 LQSLSSYTELADGDYMIKVGNGARVTAKAVGEVRLHFRENKFLVLNNVYFIPDIRRNLIS 278

Query: 206 VSKLHEHLFSLSFNDNSIIISKMGV 132
           +SKL E  F + F ++ + IS+ G+
Sbjct: 279 MSKLFEQFFKVYFVNDFVHISRNGL 303



 Score = 50.1 bits (118), Expect(2) = 2e-47
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -1

Query: 159 FDYYFKNGRDICTAKLENRLYLIKPNEQPLLNAEMFKVEHPKPKRQKVSQDD 4
           F +  +NG +I + +L++ LY IKP    LLN EMF+V  PK K+QK+S ++
Sbjct: 295 FVHISRNGLNIYSGRLDDGLYCIKPIPNSLLNTEMFRVAEPKNKKQKISHEN 346


>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
          Length = 961

 Score =  156 bits (394), Expect(2) = 1e-44
 Identities = 75/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR-KYDLLVLESCLVAKDSSTWVVDSGAINHVCSS 384
           CF+C ++ HWKR+C K+L ++K+ KK+ K DLLV+E+CLV  D S+ ++DSGA NHVC S
Sbjct: 174 CFYCNQDDHWKRNCKKYLDELKQKKKQGKLDLLVMETCLVENDFSSLIIDSGASNHVCIS 233

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLIS 207
           L+ML S ++L +G+F MRVG+GA VSA  +G + L+   +K L+L++V++IP F+RNLIS
Sbjct: 234 LKMLESSKDLEEGAFMMRVGSGARVSATTVGTVXLSFANNKYLLLHNVYFIPDFKRNLIS 293

Query: 206 VSKLHEHLFSLSFNDNSIIISKMGV 132
           VSKLHE    +SF+ +S+ I K G+
Sbjct: 294 VSKLHEQFIXVSFDIDSVSIYKNGM 318



 Score = 54.3 bits (129), Expect(2) = 1e-44
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = -1

Query: 147 FKNGRDICTAKLENRLYLIKPNEQPLLNAEMFKVEHPKPKRQKVSQD 7
           +KNG +IC+  ++N +Y +KP    LL  EMFKV  P PKR+K+S D
Sbjct: 314 YKNGMNICSGYVDNGIYFVKPIFNNLLQTEMFKVAEPTPKRRKISND 360


>gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]
          Length = 1292

 Score =  162 bits (411), Expect(2) = 2e-41
 Identities = 73/145 (50%), Positives = 108/145 (74%), Gaps = 2/145 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENK--KRKYDLLVLESCLVAKDSSTWVVDSGAINHVCS 387
           CFHC ++GHWKR+CPK+L++ K  K  + KYDLLV+E+CLV  D+STW++DSGA NH+C 
Sbjct: 254 CFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDASTWILDSGATNHICF 313

Query: 386 SLQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIRDKILILNDVFYIPGFRRNLIS 207
           S Q  SS+++L +G  T++VG G VVSA+A+G + L  +D+ LIL DV Y+P  +RNLIS
Sbjct: 314 SFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLIS 373

Query: 206 VSKLHEHLFSLSFNDNSIIISKMGV 132
           ++ + EH++++SF  N + I   G+
Sbjct: 374 IACILEHIYTISFEVNEVFILCKGI 398



 Score = 36.6 bits (83), Expect(2) = 2e-41
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 138 GRDICTAKLENRLYLIKPNE-QPLLNAEMFKVEHPKPKRQKVSQD 7
           G  IC+A  EN LY ++P     +LN EMF+    + K+QKVS +
Sbjct: 397 GIQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSN 441


>gb|AMY96445.1| gag/pol protein [Momordica dioica]
          Length = 1313

 Score =  140 bits (354), Expect = 2e-32
 Identities = 66/146 (45%), Positives = 99/146 (67%), Gaps = 3/146 (2%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR--KYDLLVLESCLVAKDSSTWVVDSGAINHVCS 387
           CFHC E GHWKR+CPK+L+  K  K    KYDLLV++ CLV  DSS WV D+G++ H+C+
Sbjct: 260 CFHCNEMGHWKRNCPKYLADKKAEKATSGKYDLLVIDVCLVECDSSAWVFDTGSVAHICN 319

Query: 386 SLQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIRDK-ILILNDVFYIPGFRRNLI 210
           S Q   +   L +G  TMRVGNG+ V A+A+G + L  +D+ ++ LN+ + +P  +RNLI
Sbjct: 320 SKQETRNKRRLKEGEITMRVGNGSKVDAEAVGDLTLFFQDRYVMNLNNCYLVPLMKRNLI 379

Query: 209 SVSKLHEHLFSLSFNDNSIIISKMGV 132
           S++ + EH++++SF  N + I   G+
Sbjct: 380 SIACILEHIYTISFEVNEVFILCKGI 405


>gb|PON89309.1| hypothetical protein TorRG33x02_148520, partial [Trema orientalis]
          Length = 356

 Score =  129 bits (325), Expect = 3e-30
 Identities = 65/94 (69%), Positives = 75/94 (79%), Gaps = 3/94 (3%)
 Frame = -2

Query: 557 FHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDS---STWVVDSGAINHVCS 387
           FHC  EGHWKR+C K+LS++ E KK KYDLLVLE CLV +D    S+ +VDSGA NHVCS
Sbjct: 263 FHCRVEGHWKRNCNKYLSELIEKKKGKYDLLVLEDCLVEEDLFDISSEIVDSGATNHVCS 322

Query: 386 SLQMLSSYEELADGSFTMRVGNGAVVSAKAMGVI 285
           S Q+LSS  ELADG FTMRVGNGA VSAKA+GV+
Sbjct: 323 SFQILSSSRELADGEFTMRVGNGAKVSAKAVGVV 356


>gb|EXC14254.1| hypothetical protein L484_021752 [Morus notabilis]
          Length = 398

 Score =  128 bits (321), Expect = 2e-29
 Identities = 60/93 (64%), Positives = 75/93 (80%), Gaps = 1/93 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR-KYDLLVLESCLVAKDSSTWVVDSGAINHVCSS 384
           CFHC  EGHWKR+C K+L ++K+ K++ K DLLVLE+CLV  D+S W++DSGA NHV  S
Sbjct: 261 CFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLVLETCLVEGDTSAWIIDSGATNHVYFS 320

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVI 285
           LQ LSSY ELADG +TM+VGNGA VSAKA+G +
Sbjct: 321 LQSLSSYTELADGDYTMKVGNGARVSAKAVGEV 353


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  123 bits (308), Expect = 2e-26
 Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           CFHC + GHWK  CP +L+K K+     + LLV+E+CL    +  W VDSGA NHVC+SL
Sbjct: 217 CFHCKQPGHWKLQCPTWLAKKKQGTS-PFHLLVVETCLAVLTTHQWCVDSGATNHVCNSL 275

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIR-DKILILNDVFYIPGFRRNLISV 204
           Q      +L+ G   + +G+G  V+  A+G I LN + ++IL L +V Y+P  RRNLISV
Sbjct: 276 QGFQETRQLSKGEVNIFLGDGTEVAVLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISV 335

Query: 203 SKLHEHLFSLSFN---DNSIII 147
           S L ++ +S+ FN   D+S++I
Sbjct: 336 SSLSKNGYSVCFNEFYDDSVVI 357


>gb|EXB73693.1| hypothetical protein L484_026856 [Morus notabilis]
          Length = 203

 Score =  113 bits (282), Expect = 1e-25
 Identities = 54/90 (60%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR-KYDLLVLESCLVAKDSSTWVVDSGAINHVCSS 384
           CFHC  EG  KR+C K+L ++K+ K++ K +LLVLE+CLV  D+S W++DSGA NHVC S
Sbjct: 72  CFHCNGEGRRKRNCHKYLEELKKKKEQGKSNLLVLETCLVEGDTSAWIIDSGATNHVCFS 131

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAM 294
           LQ +SSY +LADG +TM+VGN A VSAKA+
Sbjct: 132 LQSVSSYTKLADGDYTMKVGNVARVSAKAV 161


>gb|ONK56286.1| uncharacterized protein A4U43_C10F6140 [Asparagus officinalis]
          Length = 256

 Score =  111 bits (278), Expect = 1e-24
 Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           CF CGE GHWKR+CPK L+K +       D+ V+E   +   SSTW +DSGA +H+C+SL
Sbjct: 106 CFQCGETGHWKRNCPKVLAKKQTGMT---DIQVIEVSFIVDTSSTWCLDSGATHHICNSL 162

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIR-DKILILNDVFYIPGFRRNLISV 204
           Q      +L +G  ++ +G+ A V   A+GVI+L  + + +LILN+  Y+P  RRNLISV
Sbjct: 163 QRFQVSRQLEEGKISLSLGSEAKVLTVAVGVIRLCFQNNNVLILNNALYVPSIRRNLISV 222

Query: 203 SKLHEHLFSLSFNDNSII 150
             L    ++  F  + +I
Sbjct: 223 PCLASCGYTCLFGRDVVI 240


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  117 bits (293), Expect = 2e-24
 Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           CFHC +  HWK  CP +L+K K+     + LLV+E+CL    +  W VD GA NHVC+SL
Sbjct: 569 CFHCKQPSHWKLQCPTWLAKKKQGTS-PFHLLVVETCLAVLTTHQWCVDLGATNHVCNSL 627

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIR-DKILILNDVFYIPGFRRNLISV 204
           Q      +L+ G   + +GNG+ V+  A+G I LN + ++ L L +V Y+P  RRNLI +
Sbjct: 628 QGFQETRQLSKGEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPI 687

Query: 203 SKLHEHLFSLSFN---DNSIII 147
           S L ++ +S+ FN   D+S++I
Sbjct: 688 SSLSKNGYSVCFNEFYDDSVVI 709


>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 656

 Score =  109 bits (272), Expect = 5e-22
 Identities = 57/148 (38%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLL-VLESCLVAKDSSTWVVDSGAINHVCSS 384
           CF+C ++GHWKR+C K++  +KENK+    +  V    L   DSS WV+D+G+  ++C++
Sbjct: 180 CFYCKQKGHWKRNCKKYIDSLKENKQGMTLMKNVFMISLTVTDSSMWVLDTGSSFNICNT 239

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLIS 207
           LQ L     L  G   ++VGNG  V+A A+G + L +   K+L+L++ +YIP F  N+IS
Sbjct: 240 LQGLQITRRLKKGEVNLQVGNGENVAALALGSVSLIMPTGKVLVLDNCYYIPKFVSNIIS 299

Query: 206 VSKLHEHLFSLSFNDNSIIISKMGVIFV 123
           +S L +H F   FN+N   I +   ++V
Sbjct: 300 ISMLDKHGFLTIFNNNICSIYRGDDLYV 327


>ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207215, partial [Daucus
           carota subsp. sativus]
          Length = 3860

 Score =  107 bits (266), Expect(2) = 2e-21
 Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           C+ C + GHWK+DCP  L K K N       LV E+ + A  +STW VD+GA +HVC+S+
Sbjct: 402 CYRCKQSGHWKKDCP--LPK-KTNDTGMSLSLVTETFVAAISTSTWCVDTGATDHVCNSM 458

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLISV 204
           Q       L DG   + +G+   V+  A+GVI L+   D+IL+LN+  Y+P FRRNLISV
Sbjct: 459 QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 518

Query: 203 SKLHEHLFSLSFNDN-SIIISK 141
           SKL    +++  + N SI+++K
Sbjct: 519 SKLAMDGYNVCLDRNVSIMMNK 540



 Score =  107 bits (266), Expect(2) = 2e-21
 Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
 Frame = -2

Query: 560  CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
            C+ C + GHWK+DCP  L K K N       LV E+ + A  +STW VD+GA +HVC+S+
Sbjct: 1617 CYRCKQSGHWKKDCP--LPK-KTNDTGMSLSLVTETFVAAISTSTWCVDTGATDHVCNSM 1673

Query: 380  QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLISV 204
            Q       L DG   + +G+   V+  A+GVI L+   D+IL+LN+  Y+P FRRNLISV
Sbjct: 1674 QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 1733

Query: 203  SKLHEHLFSLSFNDN-SIIISK 141
            SKL    +++  + N SI+++K
Sbjct: 1734 SKLAMDGYNVCLDRNVSIMMNK 1755



 Score =  107 bits (266), Expect(2) = 2e-21
 Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
 Frame = -2

Query: 560  CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
            C+ C + GHWK+DCP  L K K N       LV E+ + A  +STW VD+GA +HVC+S+
Sbjct: 2832 CYRCKQSGHWKKDCP--LPK-KTNDTGMSLSLVTETFVAAISTSTWCVDTGATDHVCNSM 2888

Query: 380  QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLISV 204
            Q       L DG   + +G+   V+  A+GVI L+   D+IL+LN+  Y+P FRRNLISV
Sbjct: 2889 QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 2948

Query: 203  SKLHEHLFSLSFNDN-SIIISK 141
            SKL    +++  + N SI+++K
Sbjct: 2949 SKLAMDGYNVCLDRNVSIMMNK 2970



 Score = 25.8 bits (55), Expect(2) = 2e-21
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 141 NGRDICTAKLENRLYLIKPNEQPL 70
           N R IC+  L++ LY+I P++  L
Sbjct: 539 NKRIICSGTLQDNLYIINPSQPAL 562



 Score = 25.8 bits (55), Expect(2) = 2e-21
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 141  NGRDICTAKLENRLYLIKPNEQPL 70
            N R IC+  L++ LY+I P++  L
Sbjct: 1754 NKRIICSGTLQDNLYIINPSQPAL 1777



 Score = 25.8 bits (55), Expect(2) = 2e-21
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 141  NGRDICTAKLENRLYLIKPNEQPL 70
            N R IC+  L++ LY+I P++  L
Sbjct: 2969 NKRIICSGTLQDNLYIINPSQPAL 2992


>gb|PKI51479.1| hypothetical protein CRG98_028190 [Punica granatum]
          Length = 523

 Score =  103 bits (257), Expect = 3e-20
 Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKD-----SSTWVVDSGAINH 396
           CFHCG+ GHWKR+C ++L  +K NK++K    +  SC V  +     S+ WV D+GA +H
Sbjct: 64  CFHCGKNGHWKRNCQQYLVSLKANKEKKPLEGMSISCYVGSNGSYSSSTAWVRDTGASSH 123

Query: 395 VCSSLQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIRDKILILNDVFYIPGFRRN 216
           VC+S+Q L+S   L      +++GN A V+AKA+G   L++   +L ++ V  +P   RN
Sbjct: 124 VCTSIQGLASSRVLGRNEVCLKIGNRASVAAKAVGSTSLHLDGHVLFIDRVLVLPNAYRN 183

Query: 215 LISVSKL 195
           +ISVS L
Sbjct: 184 IISVSSL 190


>gb|KYP48511.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 422

 Score =  102 bits (253), Expect = 5e-20
 Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLL-VLESCLVAKDSSTWVVDSGAINHVCSS 384
           CF+C ++GHWKR+C K+L  +KENK+    +  V    L   DSS WV+D+G+  ++C+ 
Sbjct: 180 CFYCKQKGHWKRNCKKYLDSLKENKQGMTLMKNVFMISLTVTDSSMWVLDTGSSFNICNM 239

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLIS 207
           LQ L     L  G  +++VGNG  V A A+G + L +   K+L+L++ +YI  F  N+IS
Sbjct: 240 LQGLQITRRLKKGEVSLQVGNGENVVALALGSVSLIMPTGKVLVLDNCYYISTFVSNIIS 299

Query: 206 VSKLHEHLFSLSFNDN 159
           +S L +  F   FN+N
Sbjct: 300 ISMLAKRGFRTIFNNN 315


>gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 391

 Score =  100 bits (248), Expect = 2e-19
 Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKR-KYDLLVLESCLVAKDSSTWVVDSGAINHVCSS 384
           CFHC  EGHWKR+C K+L ++K+ K++ K DLLVLE+CLV  D+S W++DSGA NH    
Sbjct: 170 CFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLVLETCLVEGDTSAWIIDSGATNH---- 225

Query: 383 LQMLSSYEELADGSFTMRVGNGAV 312
              LSSY +LADG +TM+VG  A+
Sbjct: 226 --RLSSYTKLADGDYTMKVGKWAM 247


>gb|AAD12994.1| gag-pol polyprotein [Zea mays]
          Length = 595

 Score =  101 bits (251), Expect = 2e-19
 Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           C +C + GH+KR CP+FL  + E+ K +    V ES  +   S +W +DSGA  HV +SL
Sbjct: 257 CLYCKKTGHYKRKCPEFLQYLLESGKDQVTF-VNESLYLEYPSYSWWIDSGATVHVANSL 315

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLN-IRDKILILNDVFYIPGFRRNLISV 204
           Q L + + L  G  T+RV NG   + +A+G I L  +   +L+L DV Y+P  RRNLISV
Sbjct: 316 QGLRTSQRLPKGRRTIRVANGVEAAVEAIGDIHLKLVNGFVLLLRDVLYVPSLRRNLISV 375

Query: 203 SKLHEHLFSLSFNDNSIII 147
           S+L +      F D   +I
Sbjct: 376 SRLDDQHIHCHFGDRQCVI 394


>gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 540

 Score =  100 bits (250), Expect = 3e-19
 Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSL 381
           CFHCG+ GHWKR+CPK+L   K          +    +    S++WV+D+G  +H+C+++
Sbjct: 177 CFHCGKTGHWKRNCPKYLEDKKNGNVASTSSGINVIEINMSTSTSWVLDTGCGSHICTNV 236

Query: 380 QMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNIRDKILI-LNDVFYIPGFRRNLISV 204
           Q L +   LA G   +RVGNGA V+A A+G   L +   ++I L + +Y+P   RN+ISV
Sbjct: 237 QDLGTSRALAKGEVDLRVGNGAKVAALAVGTYDLTLPSGLIIQLLNCYYVPAISRNIISV 296

Query: 203 SKLHEHLFS 177
           S L +  FS
Sbjct: 297 SCLDKCGFS 305


>gb|PKI48303.1| hypothetical protein CRG98_031305, partial [Punica granatum]
          Length = 254

 Score = 97.1 bits (240), Expect = 3e-19
 Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYD---LLVLESCLVAKDSSTWVVDSGAINHVC 390
           CFHCG  GHWKR+C  +L ++K+ K  +     + V+E   V+  S++WV+D+G   H+C
Sbjct: 110 CFHCGNSGHWKRNCKIYLEELKKKKGSETSTSGIHVIE-INVSTASTSWVLDTGCGAHIC 168

Query: 389 SSLQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNL 213
            ++Q L +   LA G   +RVGNGA V+A  +G   L++    +L L+D +Y+P   RN+
Sbjct: 169 GNVQDLRNSRSLAKGEVDLRVGNGARVAALTVGTYHLSLPTGLVLDLDDCYYVPAISRNI 228

Query: 212 ISVSKLHEHLFSLSFND 162
           IS+S L +  F  +  +
Sbjct: 229 ISISCLDKKGFCFTIKN 245


>gb|OIT30292.1| hypothetical protein A4A49_38570 [Nicotiana attenuata]
          Length = 406

 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 12/167 (7%)
 Frame = -2

Query: 560 CFHCGEEGHWKRDCPKFLSKVKENKKRKYDLL-VLESCLVAKDSSTWVVDSGAINHVCSS 384
           CFHC ++GHWKR+C ++L+ +K+ K+ +  +  + +  L   +SS WV+D+G+  ++C+ 
Sbjct: 120 CFHCKKKGHWKRNCKEYLATLKDKKQGETLMKNIFKVSLATTNSSLWVLDTGSGYNICNM 179

Query: 383 LQMLSSYEELADGSFTMRVGNGAVVSAKAMGVIKLNI-RDKILILNDVFYIPGFRRNLIS 207
           LQ       L  G   ++VGNGA V+A A+G I L +   K+L+L+D +Y+P F  N+IS
Sbjct: 180 LQGFKISRRLKKGEVNLQVGNGAKVAAVAVGSISLIMPTGKVLMLDDCYYVPKFVSNIIS 239

Query: 206 VSKLHEHLF---------SLSFNDNSIIISKM-GVIFVLQNWKTDSI 96
            S L +  F         S+ ++DN  +   +   ++VL N   +SI
Sbjct: 240 ASMLDKRGFRINIGNGICSIYYSDNLYVNGYLQHDVYVLPNVNANSI 286


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
 gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  100 bits (249), Expect = 6e-19
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
 Frame = -2

Query: 662 TGENCNKWNSNMNIALVCENLXXXXXXXXXXXGNCFHCGEEGHWKRDCPKFLSKVKEN-- 489
           T E   K NSN ++ ++ +               CF C E GHWKR+C K+L ++K+   
Sbjct: 196 TAEESIKKNSN-HVMVMHKRKPNNKKSGPAKDAECFFCKEAGHWKRNCKKYLEQLKQKQQ 254

Query: 488 --KKRKYDLLVLESCLVAKDSSTWVVDSGAINHVCSSLQMLSSYEELADGSFTMRVGNGA 315
             K     + V+E  L    + +WV D+G++ H+C SLQ L     LA G   +RVGNGA
Sbjct: 255 DGKSSTSGINVIEINLATSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGEVDIRVGNGA 314

Query: 314 VVSAKAMGVIKLNIRDKILI-LNDVFYIPGFRRNLISVSKLHEHLFSLSFNDN 159
            V+A A+G + L++  ++++ LN+ + IP   +N+IS S L    +     DN
Sbjct: 315 RVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDN 367