BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00034069
         (587 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX81686.1| retrotransposon-related protein, partial [Trifoli...   204   1e-62
emb|CAN72768.1| hypothetical protein VITISV_020056 [Vitis vinifera]   209   2e-60
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   195   5e-54
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   167   1e-45
emb|CAN74283.1| hypothetical protein VITISV_032452 [Vitis vinifera]   166   8e-44
dbj|GAU48606.1| hypothetical protein TSUD_327180 [Trifolium subt...   160   4e-42
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   160   8e-42
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   155   2e-40
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   155   3e-40
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   154   8e-40
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   152   4e-39
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   151   1e-38
gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]   149   3e-38
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            147   2e-37
gb|KYP44905.1| Retrovirus-related Pol polyprotein from transposo...   141   3e-37
gb|PNX69701.1| copia-type polyprotein, partial [Trifolium pratense]   136   1e-36
emb|CAN74050.1| hypothetical protein VITISV_040588 [Vitis vinifera]   144   2e-36
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   143   7e-36
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   142   2e-35
gb|PNX89871.1| copia-type polyprotein, partial [Trifolium pratense]   137   4e-35

>gb|PNX81686.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 288

 Score =  204 bits (520), Expect = 1e-62
 Identities = 112/195 (57%), Positives = 132/195 (67%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           AH  VP  +RTKLD+RS TCV LG+S+ESKGYRLFDP+AKK +VVSRDVIFEEEK WDWN
Sbjct: 44  AHAHVPDARRTKLDNRSTTCVLLGVSEESKGYRLFDPVAKK-VVVSRDVIFEEEKKWDWN 102

Query: 406 VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGERM 227
              E+Q  +DLEW                         + DE  G+   +  D E  ER+
Sbjct: 103 ---EKQTVLDLEWGGVDNEEIXCENENEEIIDRDIE-ETRDEGVGETGDDYSDGE--ERV 156

Query: 226 RQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDNEIKSIEKNK 47
           R+PP WM D+VSGE  GLSDDE ++AL+ S DPL +EEAVK  NW+LAMDNEIKSIEKN 
Sbjct: 157 RRPPAWMDDFVSGE--GLSDDEAHLALMVSTDPLCFEEAVKSKNWKLAMDNEIKSIEKNH 214

Query: 46  TWTLVELPAGAKKIG 2
           TWTL+E P G K IG
Sbjct: 215 TWTLIEPPVGVKIIG 229


>emb|CAN72768.1| hypothetical protein VITISV_020056 [Vitis vinifera]
          Length = 673

 Score =  209 bits (531), Expect = 2e-60
 Identities = 113/198 (57%), Positives = 137/198 (69%), Gaps = 5/198 (2%)
 Frame = -2

Query: 583  HVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNV 404
            HV VP+ +R KLD+RS TCV LG+S++SKGY LFDPIAK+ +VVS+DVIFEEEK WDW+V
Sbjct: 482  HVHVPEERRIKLDNRSITCVLLGVSEKSKGYMLFDPIAKR-VVVSKDVIFEEEKQWDWDV 540

Query: 403  SYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXES-SHDEIYGDVFSNNGDNEGGERM 227
            SYEEQ+ VDLEW                          +HD+    V S+ G+    E  
Sbjct: 541  SYEEQMVVDLEWGDGDGENEEGVSENGNRENTDGEVGETHDK---GVXSSEGEKRVRELR 597

Query: 226  ----RQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDNEIKSI 59
                RQPPTWM DYV+GESL   +DE  +AL+ES DPLY+E  VK ANWRLAM+NEIKSI
Sbjct: 598  QTCDRQPPTWMGDYVNGESL--FEDEVYIALVESTDPLYFEAVVKNANWRLAMNNEIKSI 655

Query: 58   EKNKTWTLVELPAGAKKI 5
            +KN+TWTL+ELPAGAKKI
Sbjct: 656  KKNQTWTLIELPAGAKKI 673


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  195 bits (495), Expect = 5e-54
 Identities = 107/201 (53%), Positives = 130/201 (64%), Gaps = 6/201 (2%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            AHV VP+ +RTKLD RS TCV LG+S+ESKGYR FDP++ KKIVVSRDVIFEE+K WDW 
Sbjct: 663  AHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVS-KKIVVSRDVIFEEDKQWDWE 721

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
               E+Q   DLEW                       + + ++    +     D+  GE  
Sbjct: 722  ---EKQTVADLEWNDGENEERVSENDNEERVSENDNQGNVEKEREVIREEEHDSNEGEEI 778

Query: 232  ----RMRQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDNEIK 65
                R R+PP WM D+ SGE  GLS+DE +MAL+ S DPL +EEAVK  NWRLAM+ EIK
Sbjct: 779  VKEYRERRPPGWMSDFESGE--GLSEDEAHMALMVSIDPLCFEEAVKSENWRLAMEKEIK 836

Query: 64   SIEKNKTWTLVELPAGAKKIG 2
            SIEKN+TWTL ELPAGAK+IG
Sbjct: 837  SIEKNQTWTLTELPAGAKRIG 857


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  167 bits (423), Expect = 1e-45
 Identities = 93/197 (47%), Positives = 118/197 (59%), Gaps = 3/197 (1%)
 Frame = -2

Query: 583 HVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNV 404
           HV VP   RTKL+++S  CV LG+S+ESKGYRL++PI  +KIV+SRDV+FEE+  W+WNV
Sbjct: 360 HVHVPDAGRTKLENKSCKCVLLGMSEESKGYRLYNPIT-RKIVISRDVVFEEDTQWNWNV 418

Query: 403 SYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGD---NEGGE 233
           S+ E+   DLE+                         S+DE  G+   N  +   N+   
Sbjct: 419 SHREEQFADLEY-------GDTKNTAEVEEENTADGESNDE-EGNQSQNEENKVINDERG 470

Query: 232 RMRQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDNEIKSIEK 53
           R R PP WM+DYV GE    S+D  NMALI+  DP  +E  VK + WR AMD EI SI K
Sbjct: 471 RNRHPPGWMRDYVDGEEFSESEDAINMALIDCTDPESFEVVVKSSKWRQAMDAEINSIVK 530

Query: 52  NKTWTLVELPAGAKKIG 2
           N TW L +LP GAKKIG
Sbjct: 531 NGTWELTDLPVGAKKIG 547


>emb|CAN74283.1| hypothetical protein VITISV_032452 [Vitis vinifera]
          Length = 1338

 Score =  166 bits (419), Expect = 8e-44
 Identities = 85/204 (41%), Positives = 117/204 (57%), Gaps = 9/204 (4%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            +HV +P  +RTKLDD+S  CV LG+S+E K YRL+DP+++K I+VSRDV FEEE  WDWN
Sbjct: 614  SHVHIPDSKRTKLDDKSVKCVLLGVSEELKAYRLYDPVSQK-IIVSRDVKFEEENSWDWN 672

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
             S+E+ I  DL+W                        + H +I  +    N   E  E  
Sbjct: 673  KSHEKPIIADLDWGESDKEAVLVDTNRGNFE------TDHHDITIEAMEGNDSYESNEEN 726

Query: 232  -------RMRQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDN 74
                   R+R+PP W++DY SG+ L   +D    AL   NDP+ + +AVK   WR AMD 
Sbjct: 727  PLNPNEGRIRRPPAWLRDYASGKGLSEEEDTAYQALFVGNDPVSFGDAVKSMKWRKAMDA 786

Query: 73   EIKSIEKNKTWTLVELPAGAKKIG 2
            EI++I++N TW L +LP  AKK+G
Sbjct: 787  EIEAIDRNDTWELTDLPTEAKKVG 810


>dbj|GAU48606.1| hypothetical protein TSUD_327180 [Trifolium subterraneum]
          Length = 917

 Score =  160 bits (406), Expect = 4e-42
 Identities = 94/210 (44%), Positives = 115/210 (54%), Gaps = 22/210 (10%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            AHV +P+V+R KLDD+SF C+ LGISDESKGYRLF+P   K+IVVS+DV+FEEEK WDW 
Sbjct: 452  AHVHIPEVKRGKLDDKSFPCIMLGISDESKGYRLFNP-KTKRIVVSKDVVFEEEKSWDWG 510

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
             +++EQI  DL W                         S DE  G+      D+ GGE  
Sbjct: 511  QNFKEQIDADLVWSDDEF--------------------SCDESEGEHVVETNDDSGGEED 550

Query: 232  -------------------RMRQPPTWMKDYVSGESLGLSDDETNMAL-IESNDPLYYEE 113
                               R R+PP WM DY SG+ L   + E  M   + SNDP  YEE
Sbjct: 551  GSNESRNETEISHENTTQGRERRPPIWMTDYESGDCLSEEEAEFYMVQDVTSNDPTVYEE 610

Query: 112  AVKIANWRLAMDNEIKSIEKNKTWTLVELP 23
            AVK    R AMD EI SIEKN+ W L++LP
Sbjct: 611  AVKHEKSRKAMDCEINSIEKNQAWELMDLP 640


>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  160 bits (404), Expect = 8e-42
 Identities = 91/211 (43%), Positives = 125/211 (59%), Gaps = 16/211 (7%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            +HV VP  +R KLD +S  C+ LG+S+ESK YRLFDPI+ +KI++SRDV+FEE++ W W+
Sbjct: 421  SHVHVPDHKRVKLDAKSLRCILLGVSEESKAYRLFDPIS-QKIIISRDVVFEEDQQWKWD 479

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDN-EGGE- 233
             S+E  I  DLEW                       E    E  G+  SN+ D+ E GE 
Sbjct: 480  NSHEPAILADLEW--------ESDEETDTEDDGNEEEPEAGEDMGNSESNDSDSFENGET 531

Query: 232  ----------RMRQPPTWMKDYVSGESLGLSDDET----NMALIESNDPLYYEEAVKIAN 95
                      R R+PPTWM+DY +G   GLSD+E+     +AL   +DP  Y++AV+   
Sbjct: 532  TYEDSTPHEGRTRRPPTWMQDYETG--AGLSDEESVNLAQLALFTDSDPTTYDDAVRSEK 589

Query: 94   WRLAMDNEIKSIEKNKTWTLVELPAGAKKIG 2
            WRLAM+ EI++IE+N TW L +LP+G K IG
Sbjct: 590  WRLAMNQEIEAIERNNTWELTDLPSGGKTIG 620


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  155 bits (393), Expect = 2e-40
 Identities = 86/196 (43%), Positives = 115/196 (58%), Gaps = 1/196 (0%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            AHV +P+ +R KLDD+S+ CV LG+S ESK YRL+DPI+ ++IVVSRDV+FEE++ WDW 
Sbjct: 666  AHVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPIS-ERIVVSRDVVFEEDESWDWG 724

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGERM 227
             + EE+    L+W                       +S  + +  D        E G R 
Sbjct: 725  RTAEEERLDVLDW------------SDGEEEENESAQSEEENVNNDDAEEEEILEEG-RT 771

Query: 226  RQPPTWMKDYVSGESLGLSDDETNMALIES-NDPLYYEEAVKIANWRLAMDNEIKSIEKN 50
            R  P WM+DYVSGE L   ++  N+ +  S  DP  +EEA K A W+ AMD EI++IE+N
Sbjct: 772  RLQPIWMQDYVSGEGLSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAMDQEIEAIERN 831

Query: 49   KTWTLVELPAGAKKIG 2
             TW L  LPAGAK IG
Sbjct: 832  HTWELTILPAGAKTIG 847


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  155 bits (392), Expect = 3e-40
 Identities = 85/205 (41%), Positives = 117/205 (57%), Gaps = 10/205 (4%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            AHV +P+ +R KLD++S+ CV LG+S+ESK YRL+DPI+ ++IVVSRDV+FEE++ W+W 
Sbjct: 664  AHVHIPEAKRKKLDNKSYKCVLLGVSEESKAYRLYDPIS-ERIVVSRDVVFEEDESWEWG 722

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
             + EE     L+W                       +S  +  Y      N +N+  E  
Sbjct: 723  RTAEEVRLDVLDW------------SDGEEEENESAQSEEENEYAQSEEENVNNDDAEEE 770

Query: 232  -------RMRQPPTWMKDYVSGESLGLSDDETNMALIES-NDPLYYEEAVKIANWRLAMD 77
                   R R  P WM+DYVSGE L   ++  N+ +  S  DP  +EEA K A W+ AMD
Sbjct: 771  EEILEEGRTRMQPVWMQDYVSGEGLSEEEETNNVVMFTSVTDPATFEEAFKSAKWKAAMD 830

Query: 76   NEIKSIEKNKTWTLVELPAGAKKIG 2
             EI++IE+N TW L  LPAGAK IG
Sbjct: 831  QEIEAIERNHTWELTTLPAGAKTIG 855


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  154 bits (389), Expect = 8e-40
 Identities = 85/204 (41%), Positives = 116/204 (56%), Gaps = 9/204 (4%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           AHV +P+ +R KLDD+S+ CV LG+S ESK YRL+DPI+ ++IVVSRDV+FEE+++WDW 
Sbjct: 385 AHVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPIS-ERIVVSRDVVFEEDENWDWG 443

Query: 406 VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
            + EE     L+W                       +S  +  +      N +N+  E  
Sbjct: 444 RTAEEVRLDVLDW------------SDGEEEENESAQSEEENEFAQSEEENVNNDDAEEE 491

Query: 232 ------RMRQPPTWMKDYVSGESLGLSDDETNMALIE-SNDPLYYEEAVKIANWRLAMDN 74
                 R R  P WM+DYVSGE L   ++  N+ +     DP  +EEA K A W+ AMD 
Sbjct: 492 EILEEGRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAMDQ 551

Query: 73  EIKSIEKNKTWTLVELPAGAKKIG 2
           EI++IE+N TW L  LPAGAK IG
Sbjct: 552 EIEAIERNHTWELTILPAGAKTIG 575


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  152 bits (384), Expect = 4e-39
 Identities = 87/197 (44%), Positives = 113/197 (57%), Gaps = 3/197 (1%)
 Frame = -2

Query: 583  HVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNV 404
            HV VP V+RTKL+++S + VFLGISDESKGYR++DP+  KKI+ SRDV+FEE++ WDW+ 
Sbjct: 728  HVHVPDVKRTKLENKSTSGVFLGISDESKGYRIYDPLT-KKIMTSRDVVFEEKRKWDWDK 786

Query: 403  SYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGD---VFSNNGDNEGGE 233
            SYE+Q+ VDLEW                           D +  D   V S +  +    
Sbjct: 787  SYEQQVLVDLEWGESEDEVIENLSDNEDEDAVV----GEDVVVDDEDAVVSPSSSSSEEA 842

Query: 232  RMRQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKIANWRLAMDNEIKSIEK 53
            R R+ P WM DYVSGE L                    ++A+   +WR AM+ EIKSIEK
Sbjct: 843  RNRRLPIWMDDYVSGEGL--------------------QKAMGSEDWRRAMETEIKSIEK 882

Query: 52   NKTWTLVELPAGAKKIG 2
            N+TW L +LP GAKKIG
Sbjct: 883  NETWVLTDLPEGAKKIG 899


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  151 bits (381), Expect = 1e-38
 Identities = 83/200 (41%), Positives = 108/200 (54%), Gaps = 5/200 (2%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            A+  VP  +RTKL+D+S  CV  G+S+ESK YRL+DP +K+ I++SRDV+FEE+  W+W 
Sbjct: 666  AYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKR-IIISRDVVFEEDGQWNWE 724

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGERM 227
               EE    D EW                           +   G+   N        R 
Sbjct: 725  KKSEEDNKFDTEWEDEKSEEREESSDGNEEENATDGNEDENATDGNEDENTASPVTEHRN 784

Query: 226  RQPPTWMKDYVSGESLGLSDDETNMALI-----ESNDPLYYEEAVKIANWRLAMDNEIKS 62
            R+ P W+ DYVSGE  GLSD+E    L+       +DP  ++EAVK   WR AMD E+KS
Sbjct: 785  RRAPGWVNDYVSGE--GLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDAEMKS 842

Query: 61   IEKNKTWTLVELPAGAKKIG 2
            IEKN TW L ELP  A+KIG
Sbjct: 843  IEKNGTWDLTELPKEARKIG 862



 Score =  119 bits (297), Expect = 2e-27
 Identities = 71/184 (38%), Positives = 91/184 (49%), Gaps = 14/184 (7%)
 Frame = -2

Query: 511  SDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNVSYEEQIGVDLEWXXXXXXXXXXXX 332
            ++E K YRL+DP +K+ I++SRDV+FEE+  W+W    EE    D EW            
Sbjct: 954  NEEHKAYRLYDPTSKR-IIISRDVVFEEDGQWNWEKKSEEDNNFDTEWEDEKSEEREESS 1012

Query: 331  XXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE---------RMRQPPTWMKDYVSGESL 179
                           +   G+   N  D    E         R R+ P W  DYVSGE  
Sbjct: 1013 DVNEEENAAEGNEEENATDGNEDENATDGNEDENTASPVTEHRNRRAPGWTNDYVSGE-- 1070

Query: 178  GLSDDETNMALI-----ESNDPLYYEEAVKIANWRLAMDNEIKSIEKNKTWTLVELPAGA 14
            GLSD+E    L+       +DP  ++EAVK   WR AMD E+KSIEKN TW L ELP  A
Sbjct: 1071 GLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDAEMKSIEKNGTWDLTELPKEA 1130

Query: 13   KKIG 2
            +KIG
Sbjct: 1131 RKIG 1134


>gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1017

 Score =  149 bits (377), Expect = 3e-38
 Identities = 86/209 (41%), Positives = 110/209 (52%), Gaps = 14/209 (6%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           A+  VP  +RTKL+D+S  CV  G+S+ESK YRL+DP +K+ I++SRDV+FEE+  W+W 
Sbjct: 362 AYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKR-IIISRDVVFEEDGQWNWE 420

Query: 406 VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
              EE    D EW                           +   G+   N  D    E  
Sbjct: 421 KRSEEDNTFDTEWEDEKSEEREESTDGNEEENATDSNEEENAAEGNEEENATDGNEDENA 480

Query: 232 -------RMRQPPTWMKDYVSGESLGLSDDETNMALI-----ESNDPLYYEEAVKIANWR 89
                  R R+ P WM DYVSGE  GLSD+E    L+       +DP  ++EAVK   WR
Sbjct: 481 ASPVSEHRNRRAPGWMNDYVSGE--GLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWR 538

Query: 88  LAMDNEIKSIEKNKTWTLVELPAGAKKIG 2
            AMD E+KSIEKN TW L ELP  A+KIG
Sbjct: 539 AAMDAEMKSIEKNGTWDLTELPKEARKIG 567


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  147 bits (372), Expect = 2e-37
 Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 18/213 (8%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            AH  +P  +R+KLDD+S  CV LG+SDESK Y+L+DP++KK I++S+DVIFEE+  W+W+
Sbjct: 667  AHAHIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKK-IIISKDVIFEEDVCWNWD 725

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSH---------DEIYGDVFSNN 254
             + +E+    LEW                       E  H         D+    + SN+
Sbjct: 726  NNKDERRVDVLEWKNDYENDIEEAIEGNEEVGNNGNEEEHNNGNEGGNNDDTTNSIESNS 785

Query: 253  GDNEGGE---------RMRQPPTWMKDYVSGESLGLSDDETNMALIESNDPLYYEEAVKI 101
              +E  E         R+R+PP+++ DY +GE L   D+   M ++  +DPL +EEA K 
Sbjct: 786  SSSESHEDESPNMVEGRVRRPPSYLADYETGEGLSDEDNLNAMMMLTEDDPLSFEEARKS 845

Query: 100  ANWRLAMDNEIKSIEKNKTWTLVELPAGAKKIG 2
              WR AM  EI+SIEKNKTW L  LP G K IG
Sbjct: 846  NKWRDAMKAEIESIEKNKTWELTILPNGIKPIG 878


>gb|KYP44905.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 340

 Score =  141 bits (355), Expect = 3e-37
 Identities = 84/196 (42%), Positives = 113/196 (57%), Gaps = 1/196 (0%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           AHV +PK +R KLDD+SF C+ LG+SD SKGYRLFDP   KKI++S+DVI +E       
Sbjct: 67  AHVHIPKAKRGKLDDKSFPCILLGMSDVSKGYRLFDP-KSKKIIISKDVIDDELSD---- 121

Query: 406 VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGERM 227
             +EE +  D E                        ESS D    +   ++ +N    R 
Sbjct: 122 -GFEEDMEFDGE---------NDGDNIRDSEARNEAESSQDSEARNEVGSSQENVIQRRE 171

Query: 226 RQPPTWMKDYVSGESLGLSDDETNMAL-IESNDPLYYEEAVKIANWRLAMDNEIKSIEKN 50
           ++ PTW++++VSGE L   + E  M   I  +DP+ +EEAVK   WR AMD+EI +IEKN
Sbjct: 172 KRRPTWVREFVSGEELSEEEAEAYMVQDIVGDDPVLFEEAVKHEKWRKAMDSEISAIEKN 231

Query: 49  KTWTLVELPAGAKKIG 2
            TW L++LP GAKKIG
Sbjct: 232 HTWELMDLPTGAKKIG 247


>gb|PNX69701.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 231

 Score =  136 bits (343), Expect = 1e-36
 Identities = 74/184 (40%), Positives = 106/184 (57%), Gaps = 4/184 (2%)
 Frame = -2

Query: 541 RSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNVSYEEQIGVDLEWXX 362
           +S  CV LG+S+ESK Y+L+DP+ +KKI++SRDV+F+E++ W WN + +++   ++E   
Sbjct: 1   KSVKCVHLGVSEESKAYKLYDPV-QKKIIISRDVVFDEKQGWRWNETSDKK---EIELID 56

Query: 361 XXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEG---GERMRQPPTWMKDYVS 191
                                    D         N DN     G+R R+PP WM+DYV+
Sbjct: 57  NDAEDSVQAEPAEVDPVTTEPAVQSDSDMDTTSEENYDNTEDGVGQRARRPPGWMRDYVT 116

Query: 190 GESLGLSDDETNMALIESN-DPLYYEEAVKIANWRLAMDNEIKSIEKNKTWTLVELPAGA 14
           G  L   +   N+A+  +N DP  +EEAVK+A WR AMD EI+SIE+N TW L +LP G 
Sbjct: 117 GSELQEEEQLQNLAVFSNNEDPTCFEEAVKLAVWREAMDQEIESIERNGTWELTDLPQGM 176

Query: 13  KKIG 2
           KKIG
Sbjct: 177 KKIG 180


>emb|CAN74050.1| hypothetical protein VITISV_040588 [Vitis vinifera]
          Length = 1067

 Score =  144 bits (364), Expect = 2e-36
 Identities = 83/208 (39%), Positives = 112/208 (53%), Gaps = 14/208 (6%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           AHV VP  ++TKLD++S  CV LG SDE KGY+L+DP+A KK+V SRD++FEE++ W+W+
Sbjct: 444 AHVHVPDAKKTKLDNKSLECVLLGFSDELKGYKLYDPVA-KKVVTSRDIVFEEDRQWEWD 502

Query: 406 VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGD------N 245
            SYEEQ+ VDLEW                           D+   D   N GD      +
Sbjct: 503 TSYEEQVLVDLEWG--------------------------DDDKNDTEDNEGDENLEAAS 536

Query: 244 EGGERMRQPPTWMKDYVSGESLGL--------SDDETNMALIESNDPLYYEEAVKIANWR 89
           EG E        +    +G++             D     +  S D + YEEAV  + WR
Sbjct: 537 EGNEEAEGNENQVAANDAGDAAATDASDAPAEGSDARERRVRSSIDLINYEEAVMSSKWR 596

Query: 88  LAMDNEIKSIEKNKTWTLVELPAGAKKI 5
           LAMD++I SIEKN+TW L++L AGAK I
Sbjct: 597 LAMDSKINSIEKNQTWKLIDLLAGAKTI 624


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  143 bits (360), Expect = 7e-36
 Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 8/203 (3%)
 Frame = -2

Query: 586  AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
            A+V +P   R KLDD+S  C+ LG+S+ESKGY+L+DP+  K+++VS+DV+FEE K W+WN
Sbjct: 656  AYVHIPDFNRKKLDDKSIKCILLGLSEESKGYKLYDPV-NKRVIVSKDVVFEESKGWNWN 714

Query: 406  VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE-- 233
               + Q  +D+                           +++    +        +  E  
Sbjct: 715  NDSKSQKQIDITSTTDEGNSNEDHEIVPDDEVSDEGFEANNNSSPETDMTGESTDSEELT 774

Query: 232  -RMRQPPTWMKDYVSGESLGLSDDET----NMALIESN-DPLYYEEAVKIANWRLAMDNE 71
             R+++ P ++ DYV+GE L   D+ET    N+A+  +  DP  Y+EA+K   W+ AMD E
Sbjct: 775  PRVKRKPGYLNDYVTGEEL---DEETQHLQNLAMFSTKEDPTNYDEAIKNGVWKKAMDQE 831

Query: 70   IKSIEKNKTWTLVELPAGAKKIG 2
            I+SIE+N TW LV LPAGAKKIG
Sbjct: 832  IESIERNDTWELVTLPAGAKKIG 854


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  142 bits (357), Expect = 2e-35
 Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 5/199 (2%)
 Frame = -2

Query: 583  HVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWNV 404
            +V VP V+R KLD +   CV LG+S+ESK Y+L+DPI +KKI++SRDV+F+E + W+W+ 
Sbjct: 641  YVHVPDVKRKKLDAKGIKCVLLGVSEESKAYKLYDPI-QKKIIISRDVVFDENQGWNWDE 699

Query: 403  SYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGE--- 233
                ++  D +                         +  +  + D   N+  +E      
Sbjct: 700  KNTSKVVEDYQSIDLEVTEPMVGADEPTSSVNNGNHAGEENDHEDHDDNSSTDEEETSLP 759

Query: 232  -RMRQPPTWMKDYVSGESLGLSDDETNMALIESN-DPLYYEEAVKIANWRLAMDNEIKSI 59
             R R+PP W +DYV+   L   ++  N+A   +N DP+ Y+EAVK+  W+ AMD EI+SI
Sbjct: 760  PRTRKPPGWTRDYVT--DLNSQEELQNLAAFCNNEDPISYDEAVKVEGWKQAMDQEIESI 817

Query: 58   EKNKTWTLVELPAGAKKIG 2
            EKN TW LV+LP G KKIG
Sbjct: 818  EKNNTWELVDLPKGVKKIG 836


>gb|PNX89871.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 402

 Score =  137 bits (344), Expect = 4e-35
 Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 2/190 (1%)
 Frame = -2

Query: 586 AHVRVPKVQRTKLDDRSFTCVFLGISDESKGYRLFDPIAKKKIVVSRDVIFEEEKHWDWN 407
           A+  VP V R KLD +S  C+ LG+S+ESK Y+L+DPI + KI++SR V+F+E++ W WN
Sbjct: 214 AYAHVPDVHRKKLDPKSIKCIHLGVSEESKAYKLYDPI-QNKIIISRYVVFDEKQGWKWN 272

Query: 406 -VSYEEQIGVDLEWXXXXXXXXXXXXXXXXXXXXXXXESSHDEIYGDVFSNNGDNEGGER 230
             S +++I +                           +S  D    + + N  D   G+R
Sbjct: 273 ETSDKKEIEIIDNDGEDSIQVEHVAEDPVTTEPAVQIDSDMDTTCEENYDNTED-AVGQR 331

Query: 229 MRQPPTWMKDYVSGESLGLSDDETNMALI-ESNDPLYYEEAVKIANWRLAMDNEIKSIEK 53
            R+PP WM+DYV+G  L   +   N+A+   S DP  +EEAVK+A WR AMD EI+SIE+
Sbjct: 332 ARKPPGWMRDYVTGSELQEEEQLQNLAVFSNSEDPTCFEEAVKLAVWREAMDQEIESIER 391

Query: 52  NKTWTLVELP 23
           N+TW L +LP
Sbjct: 392 NRTWELTDLP 401