BLASTX nr result
ID: Rehmannia29_contig00033893
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00033893
(869 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|GAU10142.1| hypothetical protein TSUD_420060, partial [Trifo... 358 e-119
dbj|GAU11804.1| hypothetical protein TSUD_75550 [Trifolium subte... 369 e-116
gb|PNX80358.1| ribonuclease H, partial [Trifolium pratense] 351 e-113
dbj|GAU47940.1| hypothetical protein TSUD_136790 [Trifolium subt... 360 e-113
gb|PNX78963.1| ribonuclease H, partial [Trifolium pratense] 352 e-113
gb|PNX96237.1| ribonuclease H [Trifolium pratense] 360 e-112
gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense] 352 e-111
dbj|GAU43361.1| hypothetical protein TSUD_82070 [Trifolium subte... 353 e-111
dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subte... 355 e-110
dbj|GAU34840.1| hypothetical protein TSUD_259200 [Trifolium subt... 353 e-110
gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense] 352 e-110
dbj|GAU48422.1| hypothetical protein TSUD_405520 [Trifolium subt... 345 e-110
dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subte... 357 e-109
gb|PNY14982.1| ribonuclease H [Trifolium pratense] 354 e-109
gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense] 353 e-109
dbj|GAU36089.1| hypothetical protein TSUD_277000 [Trifolium subt... 347 e-109
gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense] 347 e-109
gb|PNY02556.1| ribonuclease H, partial [Trifolium pratense] 348 e-109
dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subt... 353 e-109
dbj|GAU30590.1| hypothetical protein TSUD_392810 [Trifolium subt... 355 e-109
>dbj|GAU10142.1| hypothetical protein TSUD_420060, partial [Trifolium subterraneum]
Length = 470
Score = 358 bits (920), Expect = e-119
Identities = 177/289 (61%), Positives = 215/289 (74%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK + ++KDWRPISL NV+YK++AKVLANRLK++L IS QSAF+ GRSILDN
Sbjct: 159 LIPKGDSQVSMKDWRPISLCNVLYKLVAKVLANRLKRILDKCISNSQSAFVPGRSILDNA 218
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
+ A E++H MK T+ K GDVALK+DI+KAYD ++W YL+ +M KMGFS WV WIMLCV
Sbjct: 219 MVAIEVIHHMKAKTKGKLGDVALKLDISKAYDRIDWIYLQGVMTKMGFSDQWVKWIMLCV 278
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
+V YSV VN PI P RGLRQGDPLSPYLFIICAEGL+ LI+ AE++G IHG ++C
Sbjct: 279 ESVDYSVLVNGIMTEPIKPSRGLRQGDPLSPYLFIICAEGLTALIRHAESSGDIHGVKIC 338
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP +SHL FADD LFFRA+++E +K IL Y+ ASGQ INF KS IF S+NV
Sbjct: 339 RNAPIISHLLFADDCFLFFRANINEAVAMKNILATYEAASGQAINFQKSEIFCSRNVLQV 398
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
+ NI LGV L TGKYLGLPS+IGR KK+ F IKD++WK I SW
Sbjct: 399 DQHNISTTLGVQAVLGTGKYLGLPSLIGRSKKSTFNFIKDRIWKKINSW 447
>dbj|GAU11804.1| hypothetical protein TSUD_75550 [Trifolium subterraneum]
Length = 1178
Score = 369 bits (948), Expect = e-116
Identities = 179/289 (61%), Positives = 222/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK + A+++DWRPI+L NV+YK++AKVLANRLK VL IS QSAF+ GRSILDN
Sbjct: 188 LIPKGDSQASMRDWRPIALCNVLYKVIAKVLANRLKVVLHKCISANQSAFVPGRSILDNA 247
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
+ A EL+H MK TR K+G+VALK+DI+KAYD ++WD+L+ +M+KMGFS W++WIM+CV
Sbjct: 248 MAAIELIHYMKAKTRGKKGEVALKLDISKAYDRLDWDFLREMMVKMGFSQQWISWIMMCV 307
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
TV YSV VN VGPIIPGRGLRQGDPLSPYLFIICAEGLS LI+KAE G +HG ++C
Sbjct: 308 ETVDYSVLVNGHTVGPIIPGRGLRQGDPLSPYLFIICAEGLSALIRKAEIKGELHGIKIC 367
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP ++HL FADD LFFRA+V E LK IL++Y+ ASGQ IN KS + S+NV
Sbjct: 368 RNAPIITHLLFADDCFLFFRANVTEAAALKNILSIYEVASGQAINLQKSEFYCSRNVPSD 427
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
+D+I LGV L TGKYLGLPS+IGR KK+ F IKD++W+ I SW
Sbjct: 428 VRDSIANQLGVLQVLGTGKYLGLPSMIGRSKKSTFKFIKDRIWRKINSW 476
>gb|PNX80358.1| ribonuclease H, partial [Trifolium pratense]
Length = 700
Score = 351 bits (900), Expect = e-113
Identities = 163/289 (56%), Positives = 227/289 (78%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK +P ++KD RPISL NV+YK+++K+LANRLK+ L +SE QSAF++GRSI+DN
Sbjct: 340 LIPKCESPRSMKDMRPISLCNVLYKMVSKLLANRLKECLDRCVSEEQSAFVEGRSIVDNA 399
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR ++G++ALKIDI+KAYD ++W +++ ++ ++GF++ W++W+MLCV
Sbjct: 400 LIAIEVIHALKRRTRGRKGELALKIDISKAYDKVDWGFMRGMLERLGFANKWIHWMMLCV 459
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI PGRGLRQGDPLSPYLFI+ EGL+ LIK + A G +HG ++C
Sbjct: 460 SSVNYSVLVNFEKVGPIFPGRGLRQGDPLSPYLFILVTEGLTTLIKNSVAKGDLHGIQIC 519
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP+VSHL FADD LF RA++DE L +ILN Y+ ASGQ IN KS +FFS+N+S+
Sbjct: 520 RGAPTVSHLLFADDCFLFCRATLDETNHLMKILNTYEEASGQEINLTKSEVFFSRNLSIA 579
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS+IGRKKK +F ++KD++WK I SW
Sbjct: 580 AQEDLSRIMGVRHVLGTGNYLGLPSMIGRKKKEVFAYLKDRIWKRINSW 628
>dbj|GAU47940.1| hypothetical protein TSUD_136790 [Trifolium subterraneum]
Length = 1063
Score = 360 bits (923), Expect = e-113
Identities = 175/289 (60%), Positives = 215/289 (74%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK ++KDWRPI+L NV+YK++AKVLANRLK VL ISE QSAF+ GRSILDN
Sbjct: 317 LIPKGEVQTSMKDWRPIALCNVLYKVVAKVLANRLKVVLDKCISENQSAFVPGRSILDNA 376
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
+ A EL+H MK TR + G+VALK+DI+KAYD + WDYL+ + MGFS W++WIMLCV
Sbjct: 377 MAAIELVHYMKSKTRGRIGEVALKLDISKAYDRIEWDYLRDVHSAMGFSQKWISWIMLCV 436
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
TV YSV +N VGPI+PGRGLRQGDPLSPYLFIICAEGLS LI+KAE G IHG ++C
Sbjct: 437 ETVDYSVIINGNVVGPIVPGRGLRQGDPLSPYLFIICAEGLSALIRKAETIGDIHGVKIC 496
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP +SHL FADD LFF+AS E +K IL Y+ ASGQ IN KS + S+NV+
Sbjct: 497 RNAPIISHLLFADDCFLFFKASDHEALVMKNILATYEEASGQTINLQKSEFYCSRNVTSS 556
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
KD++ + LGV L TGKYLGLPS++GR +K+ F +KD++WK I SW
Sbjct: 557 VKDSVASILGVQQVLGTGKYLGLPSMVGRSRKSTFKFVKDRIWKKINSW 605
>gb|PNX78963.1| ribonuclease H, partial [Trifolium pratense]
Length = 757
Score = 352 bits (903), Expect = e-113
Identities = 170/289 (58%), Positives = 220/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++KD RPISL NV+YK+++K+LANRLK L +SE QSAF++GRSILDN
Sbjct: 49 LIPKCDNPISMKDMRPISLCNVLYKMVSKLLANRLKDCLEKCVSEEQSAFVEGRSILDNA 108
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H+MKR TR +GD+ALKIDI+KAYD ++W +L+ ++ ++GF++ W+ W+MLCV
Sbjct: 109 LIAIEIIHAMKRKTRGLKGDLALKIDISKAYDKVDWGFLRGMLERLGFANKWIYWMMLCV 168
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++VTYSV VN E VGPI PGRGLRQGDPLSPYLFI+ EGLS LIK + A G IHG ++C
Sbjct: 169 SSVTYSVLVNYEKVGPIFPGRGLRQGDPLSPYLFILVTEGLSSLIKDSVARGDIHGIKIC 228
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP VSHL FADD LF R+++DE L IL Y A+GQ IN KS +FFS+N+S
Sbjct: 229 RGAPPVSHLLFADDCFLFCRSNLDETRHLMNILKTYGEAAGQEINLTKSEVFFSRNISFA 288
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS+IGRKKK IF +IKD++WK I SW
Sbjct: 289 AQEDLSRIMGVRHVLGTGNYLGLPSMIGRKKKVIFSYIKDRIWKRINSW 337
>gb|PNX96237.1| ribonuclease H [Trifolium pratense]
Length = 1283
Score = 360 bits (923), Expect = e-112
Identities = 171/289 (59%), Positives = 225/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++KD RPISL NV+YK+++K+LANRLK L +SE QSAFI+GRSILDN
Sbjct: 804 LIPKCDNPLSMKDLRPISLCNVLYKMISKLLANRLKSCLDKCVSEEQSAFIEGRSILDNA 863
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR K+G++ALKIDI+KAYD ++W +++ ++ ++GFS W++W+MLCV
Sbjct: 864 LIAIEVIHALKRRTRGKKGELALKIDISKAYDKVDWGFMRGMLERLGFSDKWIHWMMLCV 923
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++VTYSV VN E VGPI PGRGLRQGDPLSPYLFI+ EGL+RLIKK+ A+G IHG ++C
Sbjct: 924 SSVTYSVLVNFEKVGPIFPGRGLRQGDPLSPYLFILVTEGLTRLIKKSLASGDIHGVQIC 983
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP VSHL FADD LF R++++E L IL Y ASGQ IN KS +FFS+N+S+
Sbjct: 984 RGAPMVSHLLFADDCFLFCRSTIEETNHLMSILKTYGEASGQEINLSKSEVFFSRNLSIA 1043
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS+IGRKKK +F +IKD+VWK I SW
Sbjct: 1044 AREDLANTMGVRHVLGTGNYLGLPSMIGRKKKDVFAYIKDRVWKRINSW 1092
>gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense]
Length = 917
Score = 352 bits (904), Expect = e-111
Identities = 167/289 (57%), Positives = 225/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP T+KD RPISL NV+YK+++K+LANRLK L +SE QSAFI+GRSILDN
Sbjct: 50 LIPKCENPTTMKDLRPISLCNVLYKMISKLLANRLKSCLDKCVSEEQSAFIEGRSILDNA 109
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR +G++ALKIDI+KAYD ++W +++ ++ ++GFS+TW++W+MLCV
Sbjct: 110 LIAIEVIHALKRRTRGLKGELALKIDISKAYDKVDWGFMRGMLERLGFSNTWIHWMMLCV 169
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI+PGRGLRQGDPLSPYLF++ EGL++LI K+ A+G +HG ++C
Sbjct: 170 SSVNYSVLVNFEKVGPIVPGRGLRQGDPLSPYLFLLVTEGLTKLIHKSLASGELHGVKIC 229
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R APSVSHL FADD LF RA+V E L +IL Y+ ASGQ IN KS +FFS+N+S
Sbjct: 230 RGAPSVSHLLFADDCFLFCRATVAETELLMKILKTYEEASGQEINLAKSEVFFSRNLSAA 289
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS++GRKKK IF +KD++WK I +W
Sbjct: 290 DQEDLSKIMGVRHVLGTGNYLGLPSMVGRKKKHIFAFLKDRIWKRINAW 338
>dbj|GAU43361.1| hypothetical protein TSUD_82070 [Trifolium subterraneum]
Length = 985
Score = 353 bits (906), Expect = e-111
Identities = 174/289 (60%), Positives = 213/289 (73%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK + ++K WRPISL NV+YK++AKVLANRLK++L IS Q AF+ GRSILDN
Sbjct: 235 LIPKGDSQVSMKYWRPISLCNVLYKLVAKVLANRLKRILDKCISNSQPAFVPGRSILDNA 294
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
+ A E++H MK T+ K GDVALK+DI+KAYD ++W YL+ +M KMGFS WV WIMLCV
Sbjct: 295 MVAIEVIHHMKAKTKGKLGDVALKLDISKAYDRIDWIYLQGVMTKMGFSDQWVKWIMLCV 354
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
+V YSV VN + PI P RGLRQGDPLSPYLFIIC EGL+ LI+ AE++G IHG ++C
Sbjct: 355 ESVDYSVLVNGIMIEPIKPSRGLRQGDPLSPYLFIICVEGLTALIRHAESSGNIHGVKIC 414
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP +SHL FADD LFFRA+++E +K IL Y+ ASGQ INF KS IF S+NV
Sbjct: 415 RNAPIISHLLFADDCFLFFRANINEAMAMKNILATYEAASGQAINFQKSEIFCSRNVLQV 474
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
+ NI LGV L TGKYLGLPS+IGR KK+ F IKD++WK I SW
Sbjct: 475 DQHNISTTLGVQAVLGTGKYLGLPSLIGRSKKSTFNFIKDRIWKKINSW 523
>dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subterraneum]
Length = 1194
Score = 355 bits (910), Expect = e-110
Identities = 170/289 (58%), Positives = 223/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK +P ++KD+RPISL NV+YK+++K+LANRLK+ L ISE QSAFI+GRSI+DN
Sbjct: 323 LIPKCDSPTSIKDYRPISLCNVLYKMVSKLLANRLKQFLDKYISEEQSAFIEGRSIIDNA 382
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E +H++KR TR +G++ALKIDI+K YD + W +LK +++KMGFS TWV+W+MLCV
Sbjct: 383 LIAIETIHTLKRRTRGAKGELALKIDISKTYDKVEWSFLKGMLIKMGFSDTWVHWMMLCV 442
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YS VN E VGPI PGRGLRQGDPLSPYLFII AEGL+ LIKKA A+G +HG ++C
Sbjct: 443 SSVNYSALVNFEKVGPIRPGRGLRQGDPLSPYLFIIVAEGLTSLIKKAVASGDLHGIKIC 502
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP+VSHL FADD LF R+++ E +L EIL +Y+ ASGQ IN KS +FFS+N+S
Sbjct: 503 RGAPAVSHLLFADDCFLFCRSNLSEIRKLMEILKIYEEASGQEINLSKSEVFFSRNISSA 562
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV + TG YLGLPS++GR KK F IKD++WK I SW
Sbjct: 563 AQEDLSNLMGVKHVMGTGTYLGLPSMVGRSKKQTFAFIKDRIWKRINSW 611
>dbj|GAU34840.1| hypothetical protein TSUD_259200 [Trifolium subterraneum]
Length = 1122
Score = 353 bits (906), Expect = e-110
Identities = 166/289 (57%), Positives = 224/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
L+PK NP+T+ D RPISL NV+YK+++K+LANRLK L ++E QSAF++GRSI DN
Sbjct: 365 LLPKCENPSTMTDMRPISLCNVLYKMVSKLLANRLKGCLAKCVAEEQSAFVEGRSISDNA 424
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR R +G++ALKIDI+KAYD ++W +L+ ++ ++GF+ W++W+MLCV
Sbjct: 425 LIAIEVIHALKRKLRGYKGELALKIDISKAYDKVDWGFLRGMLERLGFAEKWIHWMMLCV 484
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI+PGRGLRQGDP+SPYLFI+ EGLS LIK A A G +HG ++C
Sbjct: 485 SSVNYSVLVNFEKVGPIVPGRGLRQGDPISPYLFILVTEGLSTLIKHAVARGELHGVKIC 544
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R APSVSHL FADD LF RA+ +E QLK IL Y+ ASGQ IN KS +FFS+N+SV+
Sbjct: 545 RGAPSVSHLLFADDCFLFCRANAEEVNQLKTILKTYEEASGQEINMSKSEVFFSRNLSVE 604
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TGKYLGLPS++GRKKK FG++KD++WK I SW
Sbjct: 605 AQEDLSRIMGVRHVLGTGKYLGLPSMVGRKKKETFGYVKDRIWKKINSW 653
>gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]
Length = 1094
Score = 352 bits (904), Expect = e-110
Identities = 162/289 (56%), Positives = 228/289 (78%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++KD RPISL NV+YK+++K+LANRLK+ L +SE QSAF++GRSILDN
Sbjct: 258 LIPKCENPVSMKDMRPISLCNVLYKMVSKLLANRLKECLEKCVSEEQSAFVEGRSILDNA 317
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR T+ +G++ALKIDI+KAYD ++W +++ ++ ++GF++ W++W+MLCV
Sbjct: 318 LIAIEVIHAIKRRTKGWKGELALKIDISKAYDKVDWGFMRGMLERLGFANKWIHWMMLCV 377
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI PGRGLRQGDPLSPYLF++ EGL+ LIK + A G +HG ++C
Sbjct: 378 SSVNYSVLVNFEKVGPIYPGRGLRQGDPLSPYLFLLVTEGLTALIKNSVARGDLHGVKIC 437
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP+VSHL FADD LF R+S+DE L +IL +Y+ ASGQ IN KS +FFS+N+S+
Sbjct: 438 RGAPAVSHLLFADDCFLFCRSSLDETLHLMQILKIYEQASGQEINLTKSEVFFSRNLSIS 497
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG+YLGLPS+IGRKK+ +FG++KD++WK I SW
Sbjct: 498 AQEDLSKIMGVRHVLGTGRYLGLPSMIGRKKRDVFGYVKDRIWKRINSW 546
>dbj|GAU48422.1| hypothetical protein TSUD_405520 [Trifolium subterraneum]
Length = 772
Score = 345 bits (884), Expect = e-110
Identities = 162/289 (56%), Positives = 219/289 (75%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP+T+KD RPI+L NV+YK+++K+LANRL+ L ISE Q AF++GRSILDN
Sbjct: 134 LIPKCDNPSTMKDLRPIALCNVLYKMVSKLLANRLRLCLDKCISEEQLAFVEGRSILDNA 193
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR + G++ALKIDI+KAYD ++W +LK ++L++GFS+ WV W+M+CV
Sbjct: 194 LIAMEVIHALKRRTRGRIGELALKIDISKAYDKVDWGFLKGMLLRLGFSNKWVQWMMMCV 253
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
+TV YSV +N + VGPI PGRGLRQGDPLSPYLFI+ EGL+ LIK++ G +HG ++C
Sbjct: 254 STVNYSVLMNFDKVGPIYPGRGLRQGDPLSPYLFILATEGLTALIKQSIGRGELHGIKIC 313
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP VSHL FADD +F RA++ E L +L+ Y ASGQ IN KS +FFS+N+S
Sbjct: 314 RGAPMVSHLLFADDCFMFCRANISEATHLMSLLDTYSAASGQEINLSKSEVFFSRNLSTA 373
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV + TG YLGLPS++GR KKA FG IKD++WK I SW
Sbjct: 374 AQEDLSGIMGVKHVMGTGTYLGLPSMVGRSKKATFGFIKDRIWKKINSW 422
>dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subterraneum]
Length = 1601
Score = 357 bits (917), Expect = e-109
Identities = 175/289 (60%), Positives = 218/289 (75%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++ D RPISL NV+YKI++KVLANRLK +LP IS+ QSAF++ RSI+DNV
Sbjct: 764 LIPKKENPESMSDLRPISLCNVLYKIISKVLANRLKPLLPQCISQEQSAFVENRSIIDNV 823
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
+ A E++H MK TR K G+VALKIDI+KAYD +NW+Y+K IM +MGF WVNW+ +C+
Sbjct: 824 MVATEIIHHMKCKTRGKMGEVALKIDISKAYDRVNWNYVKRIMTRMGFHDRWVNWMSMCM 883
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
+V Y V VN E VGP+ P RGLRQGDPLSPYLFIICAEGLS L+KK EA G +HG +VC
Sbjct: 884 ESVHYQVLVNGESVGPVRPKRGLRQGDPLSPYLFIICAEGLSGLLKKCEARGELHGIKVC 943
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP ++HL FADD LF RA +EC +L++IL Y+ SGQ IN KS IFFSKN
Sbjct: 944 RGAPLLTHLLFADDCFLFCRADENECNKLRDILRQYEEISGQAINLQKSEIFFSKNTKET 1003
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
K+ I V + L +GKYLGLPS++GRKKKAIFG+++D+VWK IQ W
Sbjct: 1004 VKNTIKQIFQVEEGLGSGKYLGLPSIVGRKKKAIFGYLRDRVWKRIQQW 1052
>gb|PNY14982.1| ribonuclease H [Trifolium pratense]
Length = 1316
Score = 354 bits (909), Expect = e-109
Identities = 167/289 (57%), Positives = 224/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK +P T+KD+RPISL NV+YK+++KVLANRLK V+ ISE QSAF++GRSI+DN
Sbjct: 448 LIPKCESPITMKDFRPISLCNVLYKMVSKVLANRLKLVIEKCISEEQSAFVEGRSIIDNA 507
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR +G++ALKIDI+KAYD + W +LK ++++MGFS WV WIMLCV
Sbjct: 508 LIAIEIIHALKRRTRGAKGELALKIDISKAYDKVEWSFLKGVLMRMGFSDKWVQWIMLCV 567
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YS VN E VGPI PGRGLRQGDPLSPYLFI+ EGL+ LIKKA A+G +HG ++C
Sbjct: 568 SSVNYSALVNFEKVGPIHPGRGLRQGDPLSPYLFIMVTEGLTSLIKKAVASGDLHGVKIC 627
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP VSHL FADD +F R+++ E ++ EIL +Y++ASGQ IN KS +FFS+N+S
Sbjct: 628 RGAPMVSHLLFADDCFIFCRSNLSETRKIMEILKIYEDASGQEINLSKSEVFFSRNISPA 687
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLG+PS++GR KKA F +IKD++W+ I SW
Sbjct: 688 AQEDLSNLMGVRHVLGTGTYLGMPSMVGRSKKATFAYIKDRIWRKINSW 736
>gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense]
Length = 1291
Score = 353 bits (907), Expect = e-109
Identities = 167/289 (57%), Positives = 225/289 (77%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK+ NP ++KD RPISL NV+YK+++K+LANRLK L +SE QSAFI+GRSILDN
Sbjct: 448 LIPKVENPISMKDLRPISLCNVLYKMISKLLANRLKSYLDKCVSEEQSAFIEGRSILDNA 507
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E+LH++KR TR +G++ALKIDI+KAYD ++W +++ ++ ++GFS+ W+ W+MLC+
Sbjct: 508 LIAIEVLHALKRRTRGYKGELALKIDISKAYDKVDWGFMRGMLERLGFSNKWIQWMMLCI 567
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI PGRGLRQGDPLSPYLF++ EGLS LIKK A+G +HG ++C
Sbjct: 568 SSVNYSVLVNYEKVGPIFPGRGLRQGDPLSPYLFLLVTEGLSTLIKKYVASGDLHGVQIC 627
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP+VSHL FADD LF R+++ E L IL Y++ASGQ INF KS +FFS+N+S+
Sbjct: 628 RGAPAVSHLLFADDCFLFCRSTIVETNTLMSILKTYESASGQEINFTKSEVFFSRNLSIA 687
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS+IGRKKK +F +IKD++WK I SW
Sbjct: 688 AQEDLSKIMGVKHVLGTGNYLGLPSMIGRKKKQVFAYIKDRIWKRINSW 736
>dbj|GAU36089.1| hypothetical protein TSUD_277000 [Trifolium subterraneum]
Length = 958
Score = 347 bits (889), Expect = e-109
Identities = 169/289 (58%), Positives = 216/289 (74%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
L+ K+ P ++KD RPISL NV+YKIL+KVLANRLK++LP IS Q+AF+QGR ILDN
Sbjct: 407 LVAKVDRPESMKDLRPISLCNVVYKILSKVLANRLKRILPTCISYSQAAFVQGRDILDNA 466
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
LTAFE+LH MK +R KEG VALK+D++KA+D + W YL+A+M KMGFS TWV WIM CV
Sbjct: 467 LTAFEVLHYMKCKSRGKEGLVALKLDVSKAFDRVKWSYLQAVMQKMGFSDTWVKWIMQCV 526
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
TT+ Y V +N++ VGPI P GLRQGDPLSPYL+IIC EGL+ I E+ G +HG R+C
Sbjct: 527 TTMNYHVLLNNDRVGPITPLCGLRQGDPLSPYLYIICYEGLTSYIHHYESHGMLHGVRIC 586
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R +PS+SHL FADDS LF +ASV E LK +L+ Y+ ASGQ +N+ KS I +S+N
Sbjct: 587 RGSPSISHLLFADDSFLFCKASVLEVTNLKHVLDTYEEASGQAMNYQKSAIAYSRNTEAN 646
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
+ I LGV + + GKYLGLPS++GR KK+IF IKD++WK IQ+W
Sbjct: 647 CRSFINNILGVVESMGHGKYLGLPSMVGRDKKSIFSFIKDRIWKKIQNW 695
>gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense]
Length = 997
Score = 347 bits (891), Expect = e-109
Identities = 166/289 (57%), Positives = 221/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++KD RPISL NV+YK+++K+LANRLK + +SE QSAFI+GRSILDN
Sbjct: 491 LIPKCENPGSMKDMRPISLCNVLYKMVSKLLANRLKGCIEKCVSEEQSAFIEGRSILDNA 550
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR +G++ALKIDI+KAYD ++W +L+ ++ +MGF+S W++W+MLCV
Sbjct: 551 LIAIEVIHALKRKTRGMKGELALKIDISKAYDKVDWGFLRGMLERMGFASKWIHWMMLCV 610
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV VN E VGPI PGRGLRQGDPLSPYLFI+ EGL+ LIK + A G IHG +VC
Sbjct: 611 SSVNYSVLVNYEKVGPIYPGRGLRQGDPLSPYLFILVTEGLTALIKNSVARGDIHGVKVC 670
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP VSHL FADD LF R+++DE L +L Y+ A+GQ IN KS +FFS+N+S+
Sbjct: 671 RGAPMVSHLLFADDCFLFCRSNLDETRHLMRVLKTYEEAAGQEINLSKSEVFFSRNLSLA 730
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS+IGRKK+ +F IKD++WK I SW
Sbjct: 731 AQEDLSRIMGVRQVLGTGNYLGLPSMIGRKKRDVFAFIKDRLWKRINSW 779
>gb|PNY02556.1| ribonuclease H, partial [Trifolium pratense]
Length = 1024
Score = 348 bits (892), Expect = e-109
Identities = 164/289 (56%), Positives = 221/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK NP ++KD RPISL NV+YK+++K+LANRLK L ++E QSAF++GRSILDN
Sbjct: 445 LIPKCENPMSMKDLRPISLCNVLYKVVSKLLANRLKGYLDKCVAEEQSAFVEGRSILDNA 504
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR +GD+ALKIDI+KAYD ++W +L+ ++ ++GF+ W++W+MLCV
Sbjct: 505 LIAIEIIHALKRKTRGMKGDLALKIDISKAYDKVDWGFLRGMLERLGFAEKWIHWMMLCV 564
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YSV +N E VGPI PGRGLRQGDPLSPYLFI+ AEGL+ LIK + A G IHG ++C
Sbjct: 565 SSVNYSVLINFERVGPIFPGRGLRQGDPLSPYLFILIAEGLTTLIKHSVARGDIHGVKIC 624
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R AP+VSHL FADD LF R+++ E QL IL Y+ ASGQ IN KS +FFS+N+S
Sbjct: 625 RGAPTVSHLLFADDCFLFCRSNLQEATQLMSILKTYQEASGQEINMTKSEVFFSRNLSRA 684
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS++GR KKA F ++KD++WK I SW
Sbjct: 685 AQEDLSKIMGVRHVLGTGTYLGLPSMVGRSKKATFAYVKDRIWKRINSW 733
>dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subterraneum]
Length = 1362
Score = 353 bits (906), Expect = e-109
Identities = 174/289 (60%), Positives = 220/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK +P ++KD+RPISL NV+YK+++K+LANRLK L ISE QSAFI+GRSI+DN
Sbjct: 491 LIPKCDSPQSVKDFRPISLCNVLYKMVSKLLANRLKHFLDKCISEEQSAFIEGRSIIDNA 550
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR G++ALKIDI+KAYD + W +LK++++KMGFS TWV W+MLCV
Sbjct: 551 LIAIEIIHTLKRRTRGANGELALKIDISKAYDKVEWSFLKSMLIKMGFSETWVRWMMLCV 610
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YS VN E VGPI PGRGLRQGDPLSPYLFII AEGL+ LIKKA G IHG ++C
Sbjct: 611 SSVNYSALVNFEKVGPIHPGRGLRQGDPLSPYLFIIVAEGLTSLIKKAVDGGEIHGIKIC 670
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R APSVSHL FADD LF RA++ E +L EIL +Y+ ASGQ IN KS +FFS+N S
Sbjct: 671 RGAPSVSHLLFADDCFLFCRANLSETRKLMEILEVYEQASGQEINLTKSEVFFSRNFSRA 730
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV + TG YLGLPS++GR KK F IKDK+WK I SW
Sbjct: 731 AQEDLSNMMGVKHVMGTGAYLGLPSMVGRSKKETFAFIKDKIWKRINSW 779
>dbj|GAU30590.1| hypothetical protein TSUD_392810 [Trifolium subterraneum]
Length = 1520
Score = 355 bits (910), Expect = e-109
Identities = 171/289 (59%), Positives = 222/289 (76%)
Frame = +3
Query: 3 LIPKISNPATLKDWRPISLSNVIYKILAKVLANRLKKVLPGVISEFQSAFIQGRSILDNV 182
LIPK +P+++KD+RPISL NV+YK+++K+LANRLKK L ISE QSAFI+GRSI+DN
Sbjct: 837 LIPKCDSPSSMKDYRPISLCNVLYKMVSKLLANRLKKFLDKYISEEQSAFIEGRSIIDNA 896
Query: 183 LTAFELLHSMKRNTRKKEGDVALKIDITKAYDSMNWDYLKAIMLKMGFSSTWVNWIMLCV 362
L A E++H++KR TR +G++ALKIDI+KAYD + W +LK +++KMGFS TWV W+MLCV
Sbjct: 897 LIAIEIIHTLKRRTRGGKGELALKIDISKAYDKVEWSFLKGMLIKMGFSDTWVQWMMLCV 956
Query: 363 TTVTYSVGVNDEFVGPIIPGRGLRQGDPLSPYLFIICAEGLSRLIKKAEATGTIHGSRVC 542
++V YS VN E VGPI PGRGLRQGDPLSPYLFI+ AE L+ LIKKA +G +HG ++C
Sbjct: 957 SSVNYSALVNFEKVGPIHPGRGLRQGDPLSPYLFILVAEDLTSLIKKAVESGDLHGVKIC 1016
Query: 543 RKAPSVSHLFFADDSLLFFRASVDECCQLKEILNLYKNASGQVINFGKSGIFFSKNVSVQ 722
R APSVSHL FADD LF R+++DE +L EIL Y+ ASGQ IN KS +FFS+N+S
Sbjct: 1017 RGAPSVSHLLFADDCFLFCRSNLDETRKLMEILKTYEEASGQEINLSKSDVFFSRNISRA 1076
Query: 723 KKDNICANLGVWDQLNTGKYLGLPSVIGRKKKAIFGHIKDKVWKYIQSW 869
++++ +GV L TG YLGLPS++GR K F IKD++WK I SW
Sbjct: 1077 AQEDLSNMMGVRHVLGTGTYLGLPSMVGRSNKETFAFIKDRIWKRINSW 1125