BLASTX nr result
ID: Rehmannia29_contig00032704
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia29_contig00032704
(870 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP44095.1| Retrovirus-related Pol polyprotein from transposo... 253 1e-80
gb|PNX66338.1| retrovirus-related Pol polyprotein from transposo... 252 4e-80
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo... 270 1e-79
gb|PNX59503.1| retrovirus-related Pol polyprotein from transposo... 253 1e-79
gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposo... 250 3e-79
gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposo... 257 6e-79
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 269 1e-78
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo... 257 1e-78
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo... 257 2e-78
emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vit... 265 2e-78
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo... 246 3e-77
gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposo... 245 5e-77
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo... 251 1e-76
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo... 251 2e-76
gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposo... 249 2e-76
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo... 251 2e-76
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense] 263 2e-76
emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera] 261 3e-76
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt... 263 3e-76
gb|PNY05793.1| histone deacetylase [Trifolium pratense] 263 3e-76
>gb|KYP44095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 242
Score = 253 bits (645), Expect = 1e-80
Identities = 132/235 (56%), Positives = 164/235 (69%), Gaps = 5/235 (2%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTN-----LEPHSYKEALRIPEWNATMKKEYAALLKNQTWS 345
M TRSK G KPKTYAA L + +EP++ KEAL PEW MK EY AL+ NQTWS
Sbjct: 1 MTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWLKAMKDEYQALVSNQTWS 60
Query: 346 LFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKP 525
L LP K IGCKWIFK K N DGS +HKARLVAKG+ Q GLD++ETFSPV+KP
Sbjct: 61 LV---DLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKPGLDFSETFSPVVKP 117
Query: 526 ATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKS 705
T++I+LSL++TN W I Q+DI+NAFL+GD+ +YM Q PGF T H + VCKL+K+
Sbjct: 118 TTVRIVLSLAITNQWPIHQIDINNAFLHGDLQESVYMSQPPGF-NTQH--KDKVCKLNKA 174
Query: 706 LYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
+YGLKQA R+W KL+ L GF +K+D SLF R S+ + + IL YVDDII+T
Sbjct: 175 IYGLKQAPRSWYCKLSNTLIHMGFHSTKSDTSLFVRFSKTTTLMILIYVDDIIIT 229
>gb|PNX66338.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 258
Score = 252 bits (643), Expect = 4e-80
Identities = 127/230 (55%), Positives = 161/230 (70%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M+TR+KTGNLKPKT+ A ++EP + K AL P W M+ EY AL N TWSL P
Sbjct: 1 MVTRAKTGNLKPKTFLA----SIEPTNIKNALADPHWLKAMQAEYKALQDNNTWSLVP-- 54
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LPP KK IGCKWIF++K N DGS+ K+KARLVAKGF Q G D+TETFSPVIKP TI+I
Sbjct: 55 -LPPHKKAIGCKWIFRVKENPDGSINKYKARLVAKGFHQTPGFDFTETFSPVIKPVTIRI 113
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L++T W ++Q+DI+NAFLNG + E+YM Q GF + + +VCKLHK+LYGLK
Sbjct: 114 ILTLAVTYKWSVQQIDINNAFLNGLLQEEVYMTQPTGFENS---DKTLVCKLHKALYGLK 170
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW +LT+ L GF SK D SL + + ++L YVDDI++T
Sbjct: 171 QAPRAWYERLTQTLLQMGFIKSKCDPSLLVHHQNGACTYVLIYVDDILIT 220
>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 1046
Score = 270 bits (690), Expect = 1e-79
Identities = 133/232 (57%), Positives = 172/232 (74%)
Frame = +1
Query: 175 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFP 354
H M+TR KTGNLKPK + A + EP + K+AL P+W A MK EY+AL+KN+TWSL P
Sbjct: 513 HPMVTRGKTGNLKPKVFLA----HSEPGTVKQALADPQWLAAMKCEYSALMKNETWSLVP 568
Query: 355 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 534
LP ++ IGCKW+F++K N DGSV K+KARLVAKGF+Q G DYTETFSPV+KP TI
Sbjct: 569 ---LPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTI 625
Query: 535 KIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYG 714
+IIL+L+++ W I+Q+D++NAFLNG + E+YM Q PGFV T + +VCKLHK+LYG
Sbjct: 626 RIILTLAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVST---DKTLVCKLHKALYG 682
Query: 715 LKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
LKQA RAW +LT+ L FGF SK D SLF N +D +++L YVDDI++T
Sbjct: 683 LKQAPRAWYERLTQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLT 734
>gb|PNX59503.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 340
Score = 253 bits (647), Expect = 1e-79
Identities = 125/238 (52%), Positives = 164/238 (68%)
Frame = +1
Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
++ H M TR K G ++P+ +L T++EP YK+A++ P+W MK EY ALL N
Sbjct: 109 IHPQNSHSMTTRGKLGIVQPRLNPTLLLTHVEPTGYKQAMQHPQWLQAMKCEYDALLTNN 168
Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
TWSL LP D+ IGCKW+F+LK+N DG++ K+KARLVAKGF Q G DYTETFSPV
Sbjct: 169 TWSLVT---LPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHGFDYTETFSPV 225
Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
+KP T++ +L+L++TN W I+QLD++NAFLNG +D E+YM Q PGF T + +VCKL
Sbjct: 226 VKPVTVRTVLTLAVTNKWCIQQLDVNNAFLNGLLDEEVYMVQPPGFEAT---DKTLVCKL 282
Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
K+LYGLKQA RAW +L L GF SK D SLF ++ IF+L YVDDII+T
Sbjct: 283 QKALYGLKQAPRAWFERLRSALTKLGFVPSKCDPSLFTLHANHHTIFLLVYVDDIIIT 340
>gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 269
Score = 250 bits (638), Expect = 3e-79
Identities = 124/230 (53%), Positives = 163/230 (70%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M TR+K G +KP+ +L T++EP + K+AL P W+A M+ EY ALL N TWSL P
Sbjct: 1 MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWSAAMQTEYNALLHNDTWSLVP-- 58
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LPP + IGCKW+F++K N +G+V K+KARLVAKGF Q G DY ETFSPVIKP T+++
Sbjct: 59 -LPPHRTAIGCKWVFRVKENPNGTVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRL 117
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L+LT+ W I+QLD++NAFLNG ++ E+YM Q PGF + + +VCKLHK++YGLK
Sbjct: 118 ILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEAS---DKNLVCKLHKAIYGLK 174
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW KL L F SK D SLF + ++ I+IL YVDDII+T
Sbjct: 175 QAPRAWFDKLKSTLLQLNFYASKCDPSLFVYSHANNVIYILVYVDDIIIT 224
>gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 513
Score = 257 bits (657), Expect = 6e-79
Identities = 132/236 (55%), Positives = 164/236 (69%), Gaps = 7/236 (2%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNATMKKEYAALLKNQT 339
MITR+K G KPK Y V T EP S KEA+ IP W TM +EY AL+KN T
Sbjct: 1 MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60
Query: 340 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 519
W L + LP + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61 WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117
Query: 520 KPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 699
KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+ ++YM Q PGF+QT + +VCKL
Sbjct: 118 KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQT---DKSLVCKLQ 174
Query: 700 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIV 867
KSLYGLKQA RAW +L L GF +K D+SLF R +D FIL YVDDII+
Sbjct: 175 KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIII 230
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 269 bits (687), Expect = 1e-78
Identities = 125/234 (53%), Positives = 175/234 (74%)
Frame = +1
Query: 169 QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
Q HHM+TRSK G KP Y L EP++++EA+ P+W M +E+ AL+KN+TWSL
Sbjct: 720 QPHHMVTRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 778
Query: 349 FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
LP ++ +GC+W+FKLKRN DGSV+++KARLVAKG++Q+ G D+ ETFSPV+KP
Sbjct: 779 V---SLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPT 835
Query: 529 TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
TI+++L+++++ SW IRQLD++NAFLNG++ E+YM+Q PGF + +++VCKLHK+L
Sbjct: 836 TIRVVLAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKAL 895
Query: 709 YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
YGLKQA RAW KL LQ FGF+ +K+D SLF R + S +F+L YVDDI+VT
Sbjct: 896 YGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVT 949
>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 535
Score = 257 bits (656), Expect = 1e-78
Identities = 127/230 (55%), Positives = 164/230 (71%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
MITR+KTGNLKPKT+ A ++ P + K AL P W M+ EY AL+ N+TWSL P
Sbjct: 1 MITRTKTGNLKPKTFTA----SIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVP-- 54
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LPP +K IGCKWIF++K N DGS+ K+KARLVAKGF Q G D+TETFSPVIKP TI+I
Sbjct: 55 -LPPHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRI 113
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L++T W ++Q+DI+NAFLNG + E+YM Q PGF + + +VCKLHK+LYGLK
Sbjct: 114 ILTLAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESS---DKNLVCKLHKALYGLK 170
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW +LT+ L GFT S+ D SL + + ++L YVDDI++T
Sbjct: 171 QAPRAWYDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILIT 220
>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 552
Score = 257 bits (657), Expect = 2e-78
Identities = 132/236 (55%), Positives = 164/236 (69%), Gaps = 7/236 (2%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNATMKKEYAALLKNQT 339
MITR+K G KPK Y V T EP S KEA+ IP W TM +EY AL+KN T
Sbjct: 1 MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60
Query: 340 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 519
W L + LP + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61 WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117
Query: 520 KPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 699
KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+ ++YM Q PGF+QT + +VCKL
Sbjct: 118 KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQT---DKSLVCKLQ 174
Query: 700 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIV 867
KSLYGLKQA RAW +L L GF +K D+SLF R +D FIL YVDDII+
Sbjct: 175 KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIII 230
>emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vitis vinifera]
Length = 955
Score = 265 bits (678), Expect = 2e-78
Identities = 125/234 (53%), Positives = 172/234 (73%)
Frame = +1
Query: 169 QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
Q HHM+TRSK G KPK Y L EP++++EA+ P+W M +E+ AL+KN+TWSL
Sbjct: 511 QPHHMVTRSKNGIFKPKVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 569
Query: 349 FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
LP ++ +GC+W+FKLKRN DGSV+++KARLVAKG++Q+ G D+ ETFS V+KP
Sbjct: 570 V---SLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSXVVKPT 626
Query: 529 TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
TI+++L + ++ SW IRQLD++NAFLNG++ E+YM+Q PGF + +++VCKLHK+L
Sbjct: 627 TIRVVLXIVVSQSWFIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKAL 686
Query: 709 YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
YGLKQA RAW KL LQ FGF+ +K D SLF R + S +F+L YVDDI+VT
Sbjct: 687 YGLKQAPRAWFDKLKISLQQFGFSSTKXDQSLFVRFTNCSSLFVLVYVDDIVVT 740
>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 293
Score = 246 bits (627), Expect = 3e-77
Identities = 121/230 (52%), Positives = 162/230 (70%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M TRSK+G ++PK + +L T EP S K+AL P W M EY AL+KNQTW+L P
Sbjct: 1 MQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVP-- 58
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LP ++ ++GCKW++++K N DG++ K+KARLVAKGF Q G DY+ETFSPVIKP TI++
Sbjct: 59 -LPSNRTVVGCKWVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRV 117
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L +T W I+Q+DI+NAFLNG ++ ++YM Q PGF + + +VCKL+K++YGLK
Sbjct: 118 ILTLDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVS---DKTLVCKLNKAIYGLK 174
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW +LTK L FGF S+ D SL I++L YVDDIIVT
Sbjct: 175 QAPRAWYDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVT 224
>gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 282
Score = 245 bits (625), Expect = 5e-77
Identities = 124/230 (53%), Positives = 159/230 (69%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M TR+K G +KP+ +L T++EP + K+AL W+A M+ EY ALL N TWSL
Sbjct: 1 MTTRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNSTWSAVMQTEYNALLSNDTWSLV--- 57
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LPP + IGCKW+F +K N DG+V K+KARLV KGF Q G DY ETF+PVIK TI++
Sbjct: 58 HLPPHRTAIGCKWVFCIKENPDGTVQKYKARLVTKGFNQQFGFDYNETFAPVIKLVTIRL 117
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L+LT+ W ++QLDI+NAFLNG +D E+YM Q PGF + + +VCKLHK++YGLK
Sbjct: 118 ILTLALTHHWPLQQLDINNAFLNGTLDEEVYMTQPPGFEAS---DKNLVCKLHKAIYGLK 174
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW KL L F F SK D SLF + +S I+IL YVDDII+T
Sbjct: 175 QAPRAWFEKLKSTLLQFNFQASKCDPSLFVYSHANSVIYILVYVDDIIIT 224
>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 515
Score = 251 bits (641), Expect = 1e-76
Identities = 125/238 (52%), Positives = 164/238 (68%)
Frame = +1
Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
++ + H MITR+KTG+LKPK + + EP + K AL P+W M+ E+ AL N
Sbjct: 66 ISHHNDHSMITRAKTGHLKPKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNN 121
Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
TWSL P LPP KK IGCKWIF++K N DG++ K+KARLVAKGF Q G D+TETFSPV
Sbjct: 122 TWSLVP---LPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPV 178
Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
IKP TI+IIL+L++T W ++Q+DI+NAFLNG + E+YM Q GF + + +VCKL
Sbjct: 179 IKPVTIRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESS---DKSLVCKL 235
Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
HKSLYGLKQA RAW +LT+ L GF SK D SL + + + ++L YVDDI++T
Sbjct: 236 HKSLYGLKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILIT 293
>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 535
Score = 251 bits (642), Expect = 2e-76
Identities = 126/230 (54%), Positives = 161/230 (70%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M+TR KTGNLKPK + +LEP + K AL P+W M+ EY AL+ N TWSL P
Sbjct: 1 MVTRGKTGNLKPKVFTV----SLEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVP-- 54
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
LPP KK IGCKWIF++K NSDG+V K KARLVAKGF Q G D+TETFSPVIKP TI++
Sbjct: 55 -LPPHKKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRV 113
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L++T W ++Q+D++NAFLNG + E+YM+Q GF + + +VCKLHKSLYGLK
Sbjct: 114 ILTLAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESS---DKSLVCKLHKSLYGLK 170
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA RAW +LT+ L GF SK D SL + + ++L YVDDI++T
Sbjct: 171 QAPRAWYERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILIT 220
>gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 470
Score = 249 bits (637), Expect = 2e-76
Identities = 125/230 (54%), Positives = 164/230 (71%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M TRSK+G KPK Y +VL EP + K+AL+ P+W MKKEY+ALLKN TW+L
Sbjct: 1 MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKKEYSALLKNNTWTLV--- 56
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
QLPPD+ IGCKW+F++K NSDGSV ++KARLVAKGF Q G D+ ETFSPVIKP TI++
Sbjct: 57 QLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPVIKPVTIRL 116
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L+++N W I QLD++NAFLNG ++ +YM+Q PGF +VCK +K+LYGLK
Sbjct: 117 ILTLAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP---DSTLVCKSNKALYGLK 173
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA R W +L L FGF +K D SLF + + + +++L YVDDII+T
Sbjct: 174 QAPRQWFERLQYTLLQFGFKANKCDPSLFTYHVQSNIVYLLVYVDDIIIT 223
>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 539
Score = 251 bits (642), Expect = 2e-76
Identities = 125/230 (54%), Positives = 165/230 (71%)
Frame = +1
Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
M TRSK+G KPK Y +VL EP + K+AL+ P+W MK+EY+ALLKN TW+L
Sbjct: 1 MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLV--- 56
Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
QLPPD+ IGCKW+F++K NSDGSV ++KARLVAKGF Q G D+ ETFSP+IKP TI++
Sbjct: 57 QLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRL 116
Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
IL+L+++N W I QLD++NAFLNG ++ +YM+Q PGF +VCKL+K+LYGLK
Sbjct: 117 ILTLAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP---DSTLVCKLNKALYGLK 173
Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
QA R W +L L FGF SK D SLF + + + +++L YVDDII+T
Sbjct: 174 QAPRQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIIT 223
>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
Length = 1418
Score = 263 bits (672), Expect = 2e-76
Identities = 131/238 (55%), Positives = 166/238 (69%)
Frame = +1
Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
++ N H MITR KTG+LKPKT+ A ++EP + K AL P+W MK EY AL+ N
Sbjct: 891 ISNNNNHPMITRGKTGHLKPKTFTA----SIEPTTIKSALASPQWLQAMKSEYKALMDNN 946
Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
TWSL P LPP KK IGCKWIF++K N DGSV K+KARLVAKGF Q G D+TETFSPV
Sbjct: 947 TWSLVP---LPPHKKAIGCKWIFRVKENPDGSVNKYKARLVAKGFLQTPGFDFTETFSPV 1003
Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
IKP T++IIL+L++T W ++Q+DI+NAFLNG + E+YM Q GF + + +VCKL
Sbjct: 1004 IKPVTVRIILTLAVTYRWSVQQIDINNAFLNGLLQEEVYMSQPAGFEAS---DKTLVCKL 1060
Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
HKSLYGLKQA RAW +LT+ L GF SK D SL + + ++L YVDDI++T
Sbjct: 1061 HKSLYGLKQAPRAWYERLTQTLLQMGFVKSKCDPSLLVHHQHGACTYVLVYVDDILIT 1118
>emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]
Length = 1124
Score = 261 bits (668), Expect = 3e-76
Identities = 122/234 (52%), Positives = 172/234 (73%)
Frame = +1
Query: 169 QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
Q HHM+TRSK G KPK Y L EP++++E + P+W M +E+ AL+KN+TWSL
Sbjct: 473 QPHHMVTRSKNGIFKPKVYTIDLNVE-EPNTFQETISHPKWKEAMDEEFRALMKNKTWSL 531
Query: 349 FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
LP ++ +GCKW+FKLKRN DGSV+++KARLVAKG+ Q+ D+++TFS V+KP
Sbjct: 532 V---SLPSNRTSVGCKWVFKLKRNPDGSVSRYKARLVAKGYFQVPSFDFSKTFSLVVKPT 588
Query: 529 TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
TI+++L+++++ SW IR LD++NAFLNG++ E+YM+Q PGF + +++VCKLHK+L
Sbjct: 589 TIRVVLAVAVSQSWSIRXLDVNNAFLNGELQEEVYMDQXPGFDGRTNQEQKLVCKLHKTL 648
Query: 709 YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
YGLKQA RAW KL LQ FGF+ +K+D SLF R + S +F+L YVDDI+VT
Sbjct: 649 YGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVT 702
>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
Length = 1442
Score = 263 bits (671), Expect = 3e-76
Identities = 129/238 (54%), Positives = 167/238 (70%)
Frame = +1
Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
++ + H MITR+KTGNLKPK Y ++ EP + K AL P+W A M+ EY AL+ N
Sbjct: 902 ISNHNDHSMITRAKTGNLKPKAYLSLA----EPKTVKSALSDPQWLAAMQLEYKALMDNN 957
Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
TWSL P LPP ++ IGCKW+F++K N DG+V K+KARLVAKGF Q G D+TETFSPV
Sbjct: 958 TWSLVP---LPPHRRAIGCKWVFRIKENPDGTVNKYKARLVAKGFAQTPGFDFTETFSPV 1014
Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
IKP TI+IIL+L++TN W ++Q+D++NAFLNG + E+YM Q GF +VCKL
Sbjct: 1015 IKPITIRIILTLAVTNKWPVQQIDVNNAFLNGVLQEEVYMHQPAGFENA---DRSLVCKL 1071
Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
HKSLYGLKQA RAW KLT+ L +FGF SK D SL + + ++L YVDDI++T
Sbjct: 1072 HKSLYGLKQAPRAWYEKLTQTLLTFGFVKSKCDPSLLVHSHNGAVTYVLIYVDDILIT 1129
>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
Length = 1485
Score = 263 bits (671), Expect = 3e-76
Identities = 133/238 (55%), Positives = 169/238 (71%)
Frame = +1
Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
V+ + H M+TR KTGNLKPK + T LEP + + AL +W A MK EY AL+ N+
Sbjct: 945 VSNHNNHPMVTRGKTGNLKPKAFL----TQLEPKTVRHALADSKWLAAMKDEYHALMHNK 1000
Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
TW L P LPP KK IGC+WIF++K N DGSV K KARLVAKGF Q+ G D+TETFSPV
Sbjct: 1001 TWDLVP---LPPHKKAIGCRWIFRVKENPDGSVNKFKARLVAKGFHQIAGYDFTETFSPV 1057
Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
IKP TI+IIL+L++TN W ++Q+DI+NAFLNG + E+YM Q PGF H + +VCKL
Sbjct: 1058 IKPITIRIILTLAVTNKWTVQQIDINNAFLNGFLQEEVYMVQPPGF---EHSDKTLVCKL 1114
Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
++SLYGLKQA RAW +LT L +FGFT S+ D SL + S I++L YVDDI++T
Sbjct: 1115 NRSLYGLKQAPRAWYERLTAALITFGFTKSRCDPSLLVYDLNGSTIYVLIYVDDILIT 1172