BLASTX nr result

ID: Rehmannia29_contig00032153 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00032153
         (737 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75434.1| hypothetical protein VITISV_027911 [Vitis vinifera]    40   2e-06

>emb|CAN75434.1| hypothetical protein VITISV_027911 [Vitis vinifera]
          Length = 1162

 Score = 39.7 bits (91), Expect(3) = 2e-06
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +3

Query: 318 NCVAKFPHKCC*F*ELDLRKMIGSVEMCSRFYFLK 422
           NCV KF    C F  LD RK IGS +MCS  Y L+
Sbjct: 316 NCVTKFGSNLCEFQVLDSRKTIGSAKMCSGLYLLE 350



 Score = 33.9 bits (76), Expect(3) = 2e-06
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 166 LSDRIADGLLPRVTGLGSIVSSKKVTFNLVMYVPK 270
           L+ RIA+G L ++ G GS+  SK +T + V+ VPK
Sbjct: 266 LTVRIANGSLSKMAGTGSVRVSKNITLDSVLLVPK 300



 Score = 26.2 bits (56), Expect(3) = 2e-06
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 32  MVNDSSPRSPPTSNQQSATATLAQKGNFPLPLNVIQDK 145
           + + S P   PT      T +LAQKGNF   LNV ++K
Sbjct: 201 LFSQSLPAPAPTV---VGTGSLAQKGNFFSALNVKKEK 235


Top