BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00030457
         (1137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   506   e-174
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   527   e-173
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   521   e-171
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   479   e-161
gb|PNX85109.1| retrovirus-related Pol polyprotein from transposo...   469   e-161
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   474   e-160
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   474   e-153
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   471   e-152
emb|CAN75114.1| hypothetical protein VITISV_001420 [Vitis vinifera]   455   e-148
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   457   e-146
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt...   459   e-145
gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposo...   427   e-144
gb|PNX90684.1| retrovirus-related Pol polyprotein from transposo...   414   e-141
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               439   e-139
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            437   e-139
emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]   433   e-138
gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposo...   417   e-137
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   438   e-136
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     434   e-134
gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposo...   417   e-133

>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 560

 Score =  506 bits (1302), Expect = e-174
 Identities = 244/380 (64%), Positives = 299/380 (78%), Gaps = 2/380 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMR+ GE M DVT+VEKILR+L+EK+NYVV SIEESKDID L+IDELQSSL+VHEQKF 
Sbjct: 139  NKMRTYGEQMQDVTVVEKILRSLSEKFNYVVCSIEESKDIDQLSIDELQSSLMVHEQKFT 198

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            + SGEEQALKVT +                           ++TVECYKCH+LGHFQ EC
Sbjct: 199  KHSGEEQALKVTHEGI-------------------------RATVECYKCHQLGHFQNEC 233

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P WNKEANYAEH EE+E+LLMSY++++E +REDAWFLDSGCSNHMCG++ +F  L+E F 
Sbjct: 234  PTWNKEANYAEHEEEEEMLLMSYMDVNETQREDAWFLDSGCSNHMCGDKALFYNLNEDFR 293

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
              VKLGNNS+M+V GKG V+L +NG T V T+VFYVP+LKNNLLSIGQLQE+GL+ILI+ 
Sbjct: 294  QIVKLGNNSKMSVLGKGNVRLKVNGFTHVVTEVFYVPELKNNLLSIGQLQEKGLSILIQN 353

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFS--QQQQNKCLLTSSQNMSHLWHQRYGHLSYKG 242
            G+CKIYHP+KGL+IQT+M+ NRMFVL +    Q+  CL T+ Q ++HLWH RYGHLS+KG
Sbjct: 354  GSCKIYHPEKGLVIQTEMTTNRMFVLTAVPMPQKPTCLHTTVQEIAHLWHCRYGHLSHKG 413

Query: 241  LRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPIT 62
            LRTLQ KKMV GLP      ++CT C+IGK HR+PIPKK++WRA+Q L L+HADICGPI+
Sbjct: 414  LRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHRDPIPKKANWRATQKLQLIHADICGPIS 473

Query: 61   PISNSNKRYTLCFIDDYSRK 2
            P SNS KRY +CFIDD++ K
Sbjct: 474  PTSNSKKRYLICFIDDFTMK 493


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  527 bits (1358), Expect = e-173
 Identities = 259/389 (66%), Positives = 304/389 (78%), Gaps = 11/389 (2%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMRSNGEDM DVT+VEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN
Sbjct: 197  NKMRSNGEDMKDVTVVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 256

Query: 955  R----SSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHF 788
            R    SSGEE ALKVT+DE                     ++ FSK+TVECY+CHKLGHF
Sbjct: 257  RNGSGSSGEEHALKVTIDERNKGGRGRGSFRGRGRGGGRGQRGFSKATVECYRCHKLGHF 316

Query: 787  QYECPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLD 608
            QYECP W+K+ANYAE +E++E+LLM+YVE     RE+ WFLDSGCSNHMCGN+ +F +L+
Sbjct: 317  QYECPTWDKQANYAELDEQEEMLLMAYVENIGASREEIWFLDSGCSNHMCGNKVLFAELN 376

Query: 607  EKFCHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAI 428
            + F H+V+LGNN+RM V+GKG VKL +NGV  V  DVFYVP+LKNNLLSIGQLQERGLAI
Sbjct: 377  KSFQHTVRLGNNTRMKVSGKGNVKLEVNGVNCVIGDVFYVPELKNNLLSIGQLQERGLAI 436

Query: 427  LIKGGACKIYHPDKGLIIQTDMSANRMFVL-------FSQQQQNKCLLTSSQNMSHLWHQ 269
            LI  G CKIYHP KGLIIQ++M+ANRMFVL        S   Q  C  T++Q+++HLWH 
Sbjct: 437  LIHYGKCKIYHPQKGLIIQSEMTANRMFVLVARIEPTLSDSNQEICFNTTTQDLTHLWHC 496

Query: 268  RYGHLSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLV 89
            R GH+S  GL+TLQ KKMV GLP  P  D +C DC+ GK HR PIPK+S+WRA+Q L+L+
Sbjct: 497  RLGHISNTGLQTLQRKKMVHGLPQLPALDVVCVDCLKGKQHREPIPKRSTWRATQRLELI 556

Query: 88   HADICGPITPISNSNKRYTLCFIDDYSRK 2
            HAD+CGPI+PISNS K+Y LC IDDYSRK
Sbjct: 557  HADLCGPISPISNSGKKYVLCLIDDYSRK 585


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  521 bits (1341), Expect = e-171
 Identities = 255/384 (66%), Positives = 308/384 (80%), Gaps = 6/384 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMR  GE+M DV +VEKILR+LTEK+NY+V SIEESKDIDSL+IDELQSSL VHEQKF 
Sbjct: 144  NKMRIYGENMPDVKVVEKILRSLTEKFNYIVCSIEESKDIDSLSIDELQSSLTVHEQKFQ 203

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            R +G+EQALKVT +                      R NF+K+T+ECY+CHKLGHF+YEC
Sbjct: 204  RRNGDEQALKVTYE----GGRGRGRGAFRGRGRGRGRTNFNKATMECYQCHKLGHFRYEC 259

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P+ N+EANY E N+E+ELLLMS+VEL++ +REDAWFLDSGCSNHMCG++ MF +LDE F 
Sbjct: 260  PD-NREANYVE-NDEEELLLMSFVELYDAKREDAWFLDSGCSNHMCGDRTMFSELDENFR 317

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
            HSVKLGNN++MNV GKG VK L+NG   + T+V+Y+P+L+NNLLSIGQLQE+GLAILIKG
Sbjct: 318  HSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLSIGQLQEKGLAILIKG 377

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFS------QQQQNKCLLTSSQNMSHLWHQRYGHL 254
            G CKI+HP+KGLIIQT+MS NRMF L S      Q Q ++C  T +Q++SHLWH+RYGHL
Sbjct: 378  GMCKIFHPEKGLIIQTNMSTNRMFTLRSQAQVSPQAQSDQCFHTKAQDLSHLWHRRYGHL 437

Query: 253  SYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADIC 74
            SYKGLRTL  K MVRGLP F  S  +CT+CI GK HR+PIPKKS+WRA+Q L+L+HAD+C
Sbjct: 438  SYKGLRTLLYKNMVRGLPQFSISSVICTNCINGKQHRDPIPKKSNWRATQKLELIHADVC 497

Query: 73   GPITPISNSNKRYTLCFIDDYSRK 2
            GPI+P SNSNKRY L FIDDYSRK
Sbjct: 498  GPISPSSNSNKRYILLFIDDYSRK 521


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  479 bits (1234), Expect = e-161
 Identities = 234/389 (60%), Positives = 290/389 (74%), Gaps = 11/389 (2%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            N MR+ GE+M DV IVEKILRTLT+K+NY+V SIEESKDID L++DELQSSL+VHEQKF 
Sbjct: 147  NDMRNYGENMQDVKIVEKILRTLTDKFNYIVCSIEESKDIDHLSVDELQSSLLVHEQKFR 206

Query: 955  RSSGEEQALKVTM--------DEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHK 800
            + + +EQ LKVT         +E                     RQ+F+K+ VEC+KCHK
Sbjct: 207  KGNSDEQVLKVTSVERLGPNREEDGFEGRGRGRGVFRSRGRGRGRQSFNKAVVECFKCHK 266

Query: 799  LGHFQYECPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMF 620
            LGHFQYECP W K  NYAE  EEDELLLM++VE ++ + ED WFLDSGCSNHMC N++ F
Sbjct: 267  LGHFQYECPSWEKRVNYAELEEEDELLLMAHVERNDSKPEDVWFLDSGCSNHMCCNKDWF 326

Query: 619  VKLDEKFCHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQER 440
              +DE+F HSVKLGNN+RM+V GKG ++L ++G+T V +DV++VP+L+NNLLSIGQLQE+
Sbjct: 327  TNIDEEFRHSVKLGNNARMSVMGKGSIRLKVDGLTQVISDVYFVPELRNNLLSIGQLQEK 386

Query: 439  GLAILIKGGACKIYHPDKGLIIQTDMSANRMFVLFSQ---QQQNKCLLTSSQNMSHLWHQ 269
            GLAILI+ G CKIYH  KGLI+QT M+ANRMFVL +       + C+  SS ++SHLWH 
Sbjct: 387  GLAILIQHGVCKIYHSKKGLIMQTPMTANRMFVLLANVVVTDFSTCMQASSDDLSHLWHC 446

Query: 268  RYGHLSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLV 89
            RY HL+YKGL+TL  +KMV+GLP    S  +C DC++GK  R+ IPK S WRASQ L LV
Sbjct: 447  RYSHLNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLV 506

Query: 88   HADICGPITPISNSNKRYTLCFIDDYSRK 2
            HADICGPITP SNS+KRY L FIDD+SRK
Sbjct: 507  HADICGPITPTSNSDKRYVLSFIDDFSRK 535


>gb|PNX85109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 488

 Score =  469 bits (1208), Expect = e-161
 Identities = 231/350 (66%), Positives = 283/350 (80%), Gaps = 6/350 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMR+ GE+M+DV +VEKILR+LTEK+NY+V SIEESKDID+L+IDELQSSL+VHEQKF 
Sbjct: 144  NKMRTYGEEMSDVKVVEKILRSLTEKFNYIVCSIEESKDIDALSIDELQSSLIVHEQKFQ 203

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            R SGEEQALKVT +                      R +F+K+TVECY+CH+LGHF+YEC
Sbjct: 204  RRSGEEQALKVTYE----GGRGRGRGAYRGRGRGRGRADFNKATVECYQCHRLGHFRYEC 259

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            PE NKEANYAE +EE E+LLMSYVEL+E +REDAWFLDSGCSNHMCG++ +F +LDEKF 
Sbjct: 260  PE-NKEANYAEIDEETEMLLMSYVELYEAKREDAWFLDSGCSNHMCGDRTVFNELDEKFR 318

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
            HSVKLGNN++MNV GKG VKLL+NG+    T+V+Y+P+L+NNLLSIGQLQE+GLAILIKG
Sbjct: 319  HSVKLGNNTKMNVMGKGSVKLLLNGMNFFVTEVYYIPELQNNLLSIGQLQEKGLAILIKG 378

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLF------SQQQQNKCLLTSSQNMSHLWHQRYGHL 254
            G+CKI+HP+KGL+IQT+MSANRMF+L       SQ Q ++C  T +Q++SHLWH+RYGHL
Sbjct: 379  GSCKIFHPEKGLMIQTNMSANRMFILLPQTQASSQAQFDQCFHTKAQDLSHLWHRRYGHL 438

Query: 253  SYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQ 104
            SYKGL+TL  K MVRGLP    S   CTDCI GK HR+ IP+KS+WRA+Q
Sbjct: 439  SYKGLKTLLYKNMVRGLPQLSISTVTCTDCINGKQHRDSIPRKSNWRATQ 488


>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  474 bits (1221), Expect = e-160
 Identities = 230/382 (60%), Positives = 292/382 (76%), Gaps = 4/382 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            +KMR+ GE M DV IVEKILR+LT+++NY+V SIEESKDIDSL+IDELQSSL+VHEQKF+
Sbjct: 146  SKMRTYGEQMQDVIIVEKILRSLTDRFNYIVCSIEESKDIDSLSIDELQSSLIVHEQKFH 205

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNF-SKSTVECYKCHKLGHFQYE 779
            +   EEQALKV+ +E                      +   +++T+EC+KCHKLGH++YE
Sbjct: 206  KKHEEEQALKVSSEERNDNGGRGRGSYRGRGRGRGRGRGRQNRATIECFKCHKLGHYKYE 265

Query: 778  CPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
            CP+W  +A Y   NEE+ELLLM+Y +LH+V+  +AWFLDSGCSNHMCGN+  F ++D+ F
Sbjct: 266  CPDW--DAYYVAFNEEEELLLMAYEDLHDVQTTNAWFLDSGCSNHMCGNRAWFKEVDDTF 323

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
               VKLGNN+RM VTGKG V+L I GVT V TDVF VP+LKNNLLSIGQLQE+GL ++ +
Sbjct: 324  KQHVKLGNNTRMEVTGKGSVRLNIKGVTHVITDVFLVPELKNNLLSIGQLQEKGLTVMFQ 383

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYK 245
             G CK+YHPDKGLI++T+M+ N MF+LF+Q   +++ C   S+Q++S LWH RY HLS+K
Sbjct: 384  SGTCKLYHPDKGLILETNMTTNIMFILFAQSATKKDSCFHISTQDLSSLWHHRYAHLSHK 443

Query: 244  GLRTLQNKKMVRGLP-NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGP 68
            GLR LQ+K MVRGLP +   ++ +C DC  GK HR+PIPKKS WRA Q L+L+HADICGP
Sbjct: 444  GLRILQSKGMVRGLPSSLSTTENVCEDCTKGKQHRDPIPKKSQWRAKQKLELIHADICGP 503

Query: 67   ITPISNSNKRYTLCFIDDYSRK 2
            ITP SNS KRY LCFIDDYSRK
Sbjct: 504  ITPSSNSQKRYFLCFIDDYSRK 525


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  474 bits (1221), Expect = e-153
 Identities = 228/380 (60%), Positives = 290/380 (76%), Gaps = 2/380 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM+++ E+M ++ IVEKILR++T K++YVV SIEES ++ ++TIDELQSSL+VHEQ+  
Sbjct: 144  NKMKAHSENMAELVIVEKILRSMTAKFDYVVCSIEESNNLTTMTIDELQSSLLVHEQRMR 203

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
               GEEQALKVT ++                      Q F+K+ VECYKCHKLGHFQYEC
Sbjct: 204  GHGGEEQALKVTYEDRTSGRGRGRGGFRGRGRGRSR-QQFNKALVECYKCHKLGHFQYEC 262

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            PEW K ANYAE +E++E+LLM+YVEL+  + E+ WFLDSGCSNHM GN++ F+ L+E+F 
Sbjct: 263  PEWEKGANYAELDEKEEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKKWFIDLNEQFR 322

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
             SVKLGNNS+M V GKG V+L  NGVT V TDV+Y+P+LKNNLLSIGQLQE+G+AILI+ 
Sbjct: 323  QSVKLGNNSKMAVMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVAILIQN 382

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYKG 242
            G C+IYHP KGLI+QT MSANRMFV+ +    Q + C  T S++ +HLWH RYGHLS+KG
Sbjct: 383  GMCQIYHPRKGLIMQTKMSANRMFVILANMLPQASACFQTVSEDNTHLWHCRYGHLSFKG 442

Query: 241  LRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPIT 62
            L+TLQ + MV+GLP+F    +LC DC++GK HR  IPKKS WRAS  L L+H+DICGPI 
Sbjct: 443  LKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIK 502

Query: 61   PISNSNKRYTLCFIDDYSRK 2
            P+SN+ KRY + FIDDYSRK
Sbjct: 503  PLSNNRKRYLISFIDDYSRK 522


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  471 bits (1212), Expect = e-152
 Identities = 229/381 (60%), Positives = 288/381 (75%), Gaps = 3/381 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM+++GE+M ++ IVEKILR++T K++Y+V SIEES ++ ++TI+ELQSSL+VHEQ+  
Sbjct: 144  NKMKAHGENMIELVIVEKILRSMTAKFDYMVCSIEESNNLTTMTINELQSSLLVHEQRMR 203

Query: 955  RSSGEEQALKVTM-DEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYE 779
               GEEQAL VT  D                      RQ F K+ VECYKCHKLGHFQ+E
Sbjct: 204  SHGGEEQALNVTYEDRTGGRGRGRGRGGFRGRGRGRGRQQFDKALVECYKCHKLGHFQHE 263

Query: 778  CPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
             PEW K ANYAEH+E +E+LLM+YVEL+  + E+ WFLDSGCSNHM GN++ F  L+E+F
Sbjct: 264  FPEWEKGANYAEHDENEEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKQWFTDLNEQF 323

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
              SVKLGNNS+M V GKG V+L  NGVT V TDV+Y+P+LKNNLLSIGQLQE+G+ ILI+
Sbjct: 324  RQSVKLGNNSKMAVMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVTILIR 383

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYK 245
             G C+IYHP KGLI+QT MSANRMFV+ +    Q + C  T S++ +HLWH RYGHLS+K
Sbjct: 384  NGMCQIYHPRKGLIMQTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFK 443

Query: 244  GLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPI 65
            GLR+LQ +KMV+GLP+F  S +LC DC++GK HR  IPKKS WRAS  L L+H+DICGPI
Sbjct: 444  GLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPI 503

Query: 64   TPISNSNKRYTLCFIDDYSRK 2
             P+SNS KRY + FIDDYSRK
Sbjct: 504  KPLSNSRKRYLISFIDDYSRK 524


>emb|CAN75114.1| hypothetical protein VITISV_001420 [Vitis vinifera]
          Length = 1095

 Score =  455 bits (1170), Expect = e-148
 Identities = 226/380 (59%), Positives = 271/380 (71%), Gaps = 2/380 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMR +GE M +VTIVEKILR+LT+ +NY+V SIEESKD D+LTIDELQSSL+VHEQKF+
Sbjct: 82   NKMRFHGEQMREVTIVEKILRSLTDNFNYIVCSIEESKDTDTLTIDELQSSLIVHEQKFH 141

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            +   EEQALKVT+DE                      Q  +++TVECY+CH+LGHFQY+C
Sbjct: 142  KKPVEEQALKVTIDERIGTGGRGRNSYRGRGRGRGR-QALNRATVECYRCHQLGHFQYDC 200

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P WNKEANYAE  E +++LLM+YVE  E +  D WFLDSG SNHMCG+  MF +LDE F 
Sbjct: 201  PTWNKEANYAELEEHEDVLLMAYVEEQEAKHNDVWFLDSGYSNHMCGDARMFSELDESFR 260

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
              VKLGNNSR+ + G+G V+L +NG   V   VFYVP+LKNNLLSIGQLQE+GLAI+I  
Sbjct: 261  QQVKLGNNSRITMKGRGNVRLQLNGFNYVLKAVFYVPELKNNLLSIGQLQEKGLAIMIHD 320

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFSQQQQNK--CLLTSSQNMSHLWHQRYGHLSYKG 242
            G CKIYHP KGLIIQT MS NRMF L + +Q+ K  C   SSQ + HLWH+RYGHLS+KG
Sbjct: 321  GLCKIYHPGKGLIIQTAMSTNRMFTLLTNKQEKKEVCFQASSQELYHLWHRRYGHLSHKG 380

Query: 241  LRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPIT 62
            L  L  K MVRGLP+   +   CTDC+ GK HR+PIPKK              +ICGP+T
Sbjct: 381  LNILXTKNMVRGLPHLLPTTLXCTDCLNGKQHRDPIPKK--------------NICGPVT 426

Query: 61   PISNSNKRYTLCFIDDYSRK 2
            P SN  KRY LCFIDD+SRK
Sbjct: 427  PTSNGKKRYALCFIDDFSRK 446


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  457 bits (1176), Expect = e-146
 Identities = 219/381 (57%), Positives = 277/381 (72%), Gaps = 3/381 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            N MR+NGE M D+ IVEKILRTLTE++NY+VVSIEESKDI+ L++DELQSSL+VHEQKF 
Sbjct: 143  NNMRNNGEAMQDIQIVEKILRTLTERFNYIVVSIEESKDINCLSVDELQSSLIVHEQKFR 202

Query: 955  RS-SGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYE 779
            R  + EEQ LKVT +E                          K+ +EC+KCHK GHFQYE
Sbjct: 203  RRINEEEQVLKVTQEERSGRGRGRSTFGGYRGRGRGRSSPAYKAAIECFKCHKKGHFQYE 262

Query: 778  CPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
            CP+W +EAN+AE   EDELLLM+YVE  +  RE+ WFLDSGCSNHM GN+E F  L+E F
Sbjct: 263  CPDWEREANFAELEHEDELLLMAYVEEKKETREEIWFLDSGCSNHMSGNKEWFTDLNEDF 322

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
              +VKLGN+SR+ VTG G V+L +NG+  V T+V+Y+P+LKNNLLSIGQLQE+GL +LI+
Sbjct: 323  KQTVKLGNDSRIAVTGIGSVRLWVNGIVQVITNVYYIPELKNNLLSIGQLQEKGLTVLIQ 382

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLFSQQQQN--KCLLTSSQNMSHLWHQRYGHLSYK 245
             G CK+ HP +G I+ +DMS NRMF   ++      KC+   + + S LWH R+GHL+YK
Sbjct: 383  NGTCKVLHPSRGPIMHSDMSGNRMFYFLAKMVSTLPKCMQVEADDESRLWHSRFGHLNYK 442

Query: 244  GLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPI 65
            GLRTL  + MV GLP      +LCT C++GK HR+PIPK++ WRA+  L LVH+DICGPI
Sbjct: 443  GLRTLAYRGMVEGLPTVKTPQKLCTHCLVGKQHRDPIPKRNLWRATHKLQLVHSDICGPI 502

Query: 64   TPISNSNKRYTLCFIDDYSRK 2
            +PISNSNKRY L FIDD++RK
Sbjct: 503  SPISNSNKRYILSFIDDFTRK 523


>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  459 bits (1181), Expect = e-145
 Identities = 221/383 (57%), Positives = 277/383 (72%), Gaps = 5/383 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM+SNGE M   T+V KILR+LT K+NYVV SIEES D+ +L+IDEL  SL+VHEQ+  
Sbjct: 145  NKMKSNGETMEQSTVVSKILRSLTSKFNYVVCSIEESNDLSTLSIDELHGSLLVHEQRMQ 204

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
                EE  LK+T D+                     RQ+ +++T+EC+KCHKLGHFQYEC
Sbjct: 205  GFQAEEHVLKITSDDRPVRGRGGRGLYRGGRGRGRGRQSLNRATIECFKCHKLGHFQYEC 264

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P+W  +ANYAE  EE+ELLLM+Y EL +  +E+AWFLDSGCSNHM GN++ F +++E FC
Sbjct: 265  PDWENKANYAELEEEEELLLMAYEELRQPSQEEAWFLDSGCSNHMTGNKKWFSEMEEGFC 324

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
             +VKLGN++ M V  KG +++ INGVT V +DV++VP+LKNNLLS+GQLQE+GLAILI+ 
Sbjct: 325  RTVKLGNDTTMAVVAKGSIRVQINGVTQVISDVYFVPELKNNLLSLGQLQEKGLAILIQN 384

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFSQQQQNK---CLLTS--SQNMSHLWHQRYGHLS 251
              CK++HPDKGLI+ T M  NRMF L      NK   CL     S+  + LWH R+GHL+
Sbjct: 385  NTCKVFHPDKGLIMHTSMKGNRMFYLTVSAAPNKHSMCLQAEMMSEKETQLWHSRFGHLN 444

Query: 250  YKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICG 71
            YKGL TL NKKMV GLP+     ++CT C+IGK HR  IPKKSSWRAS+ L LVHADICG
Sbjct: 445  YKGLNTLSNKKMVIGLPSLKSPKKICTTCLIGKQHRESIPKKSSWRASKKLQLVHADICG 504

Query: 70   PITPISNSNKRYTLCFIDDYSRK 2
            PITP SNSNKRY L FIDD++RK
Sbjct: 505  PITPSSNSNKRYILSFIDDFTRK 527


>gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  427 bits (1099), Expect = e-144
 Identities = 219/383 (57%), Positives = 274/383 (71%), Gaps = 5/383 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM++NGED+ D  IVEKILR++T K+NYVV SIEESKD   L++DELQSSL+VHEQ+ +
Sbjct: 144  NKMKANGEDLKDFAIVEKILRSMTPKFNYVVCSIEESKDTSMLSLDELQSSLLVHEQRMS 203

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
             +  EEQALKVT                         QNF+K+TVE + CHKLGHFQ+EC
Sbjct: 204  NTVHEEQALKVTHGNQYAGRGRGRGGFGGRGRGRNG-QNFNKATVESFACHKLGHFQWEC 262

Query: 775  PEWNKE-ANYAEHNEEDE--LLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDE 605
               NK  AN+AE   E E  +LLM+YVE  E  + D WFLDSGCSNHMCG +E F  LDE
Sbjct: 263  ---NKGVANFAESQVESEEHMLLMAYVEEIEQHKTDMWFLDSGCSNHMCGKREYFSDLDE 319

Query: 604  KFCHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAIL 425
             F   VKLGNNS + V GKG ++L I+G+  + + VFYV +LKNNLLS+GQLQE+GL+IL
Sbjct: 320  NFTDLVKLGNNSNIVVNGKGNIRLKIDGIISIISGVFYVLELKNNLLSLGQLQEKGLSIL 379

Query: 424  IKGGACKIYHPDKGLIIQTDMSANRMFVL--FSQQQQNKCLLTSSQNMSHLWHQRYGHLS 251
             + G CKIYHPDKGLI++ +M ANRMF+L   S    + C   ++++++HLWH R+GHLS
Sbjct: 380  FQQGHCKIYHPDKGLIMKANMFANRMFILHSISLPISSTCFKIATEDVAHLWHCRFGHLS 439

Query: 250  YKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICG 71
            +KGL+TLQ K+MV+GLP      +LC DCI GK HR+  P KSSWRASQ+L LVHADICG
Sbjct: 440  FKGLQTLQQKEMVKGLPLLKSPSKLCKDCIAGKQHRDSFPIKSSWRASQILQLVHADICG 499

Query: 70   PITPISNSNKRYTLCFIDDYSRK 2
            PI P SNSNKRY + FIDD+S+K
Sbjct: 500  PIKPASNSNKRYLITFIDDFSQK 522


>gb|PNX90684.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 372

 Score =  414 bits (1064), Expect = e-141
 Identities = 196/373 (52%), Positives = 265/373 (71%), Gaps = 9/373 (2%)
 Frame = -3

Query: 1129 MRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFNRS 950
            M+++GE M  + +VEKILR++  +++YVV +IEES D++++TIDELQSSL+VHEQ+ N  
Sbjct: 1    MKAHGERMEQLVVVEKILRSMNRQFDYVVAAIEESNDLNTMTIDELQSSLLVHEQRMNSH 60

Query: 949  SGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXR-------QNFSKSTVECYKCHKLGH 791
              EEQ LKVT+D+                             Q F++  +ECYKCHKLGH
Sbjct: 61   IREEQVLKVTLDDNSERNNNDRFGGRGRGRGGFRGRGRGRGRQQFNRELIECYKCHKLGH 120

Query: 790  FQYECPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKL 611
            FQYECP+W + A+YAE NE +E+LLM++ E HE +  + WFLDSGCSNHM GN++ F  +
Sbjct: 121  FQYECPDWERNAHYAELNESEEILLMAHAE-HEEKSVELWFLDSGCSNHMTGNKKWFTDI 179

Query: 610  DEKFCHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLA 431
            DE++  SVKLGNN +M V G+G VKL +NG+  V T+V+YVP+LKNNL+SIGQL E+G++
Sbjct: 180  DEQYQQSVKLGNNFKMAVVGRGNVKLHVNGIMQVITNVYYVPELKNNLISIGQLIEKGVS 239

Query: 430  ILIKGGACKIYHPDKGLIIQTDMSANRMFVLFS--QQQQNKCLLTSSQNMSHLWHQRYGH 257
            +LI+ G C+ YH  +GL +QT MSANRMFV  +    Q + C  T+S++ +HLWH RYGH
Sbjct: 240  VLIQNGECRCYHSKEGLFLQTKMSANRMFVFHATPMSQFSSCFKTASEDETHLWHCRYGH 299

Query: 256  LSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADI 77
            L+Y GL+TLQ+KKMV GLP      +LC DC++GK  R PIPKKS WRA+  L L+H+DI
Sbjct: 300  LNYNGLKTLQSKKMVTGLPEIRTPSKLCNDCVMGKQQRKPIPKKSLWRATHKLQLIHSDI 359

Query: 76   CGPITPISNSNKR 38
            CGPITP ++S KR
Sbjct: 360  CGPITPSTSSGKR 372


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  439 bits (1128), Expect = e-139
 Identities = 214/383 (55%), Positives = 277/383 (72%), Gaps = 5/383 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM++NGE M   TIV KILR+LT K+NYVV SIEES D+ +L+IDEL  SL+VHEQ+ N
Sbjct: 145  NKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLLVHEQRLN 204

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQN-FSKSTVECYKCHKLGHFQYE 779
                EEQALKVT +E                      ++  +++ VECYKCH LGHFQYE
Sbjct: 205  GHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTNRAIVECYKCHNLGHFQYE 264

Query: 778  CPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
            CPEW K ANYAE  EE+ELLLM+YVE ++  R++ WFLDSGCSNHM G++E F +L+E F
Sbjct: 265  CPEWEKNANYAELEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELEEGF 324

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
              +VKLGN++RM+V GKG VK+ +NGVT V  +V+YVP+L+NNLLS+GQLQERGLAILI+
Sbjct: 325  NRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQLQERGLAILIR 384

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLFSQQQQNKCLLTSSQNM----SHLWHQRYGHLS 251
             G CK+YHP KG I++T+MS NRMF L + + Q   L   ++ +    +HLWH R+GHL+
Sbjct: 385  DGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGHLN 444

Query: 250  YKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICG 71
             +GL+ L +KKMV GLP    + E+C  C+ GK HR  + KK+SW++S  L LVH+DICG
Sbjct: 445  QEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICG 504

Query: 70   PITPISNSNKRYTLCFIDDYSRK 2
            PITPIS+S KRY L FIDD++RK
Sbjct: 505  PITPISHSGKRYILSFIDDFTRK 527


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  437 bits (1125), Expect = e-139
 Identities = 214/381 (56%), Positives = 279/381 (73%), Gaps = 3/381 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKM+++GE M+   I EKILR++  K++YVV SIEES ++D++TIDELQSSL+VHEQ+  
Sbjct: 146  NKMKAHGESMSQTIITEKILRSMISKFDYVVCSIEESNNLDTMTIDELQSSLLVHEQRMT 205

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
                EEQ LK++  E                     RQ ++K+ +EC++CH+LGH+QYEC
Sbjct: 206  SHREEEQVLKIS-HEDRYGRGRGRGMFRGGRGRGRGRQPYNKALIECFRCHQLGHYQYEC 264

Query: 775  PEWNKEANYAEHNE-EDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
            P+W ++ANYAE  E E+E+LLMSYVE+    +E+ WFLDSGCSNHM GN++ F  LDE F
Sbjct: 265  PDWEQKANYAEFEEKEEEILLMSYVEIKHDEKEEMWFLDSGCSNHMSGNKKWFSDLDESF 324

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
             H+VKLGN+SRM V GKG V++ +NG T V ++V+Y+P+LKNNLLSIGQLQ++GL+ILI+
Sbjct: 325  RHTVKLGNDSRMAVIGKGNVRMRVNGFTQVISNVYYIPELKNNLLSIGQLQDKGLSILIQ 384

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLFSQQQQNK--CLLTSSQNMSHLWHQRYGHLSYK 245
             G C IYHP KGLI++T MS N+MF L +    N+  C    S+N S+LWH R+GHLSY+
Sbjct: 385  HGKCMIYHPTKGLIMETIMSGNKMFCLVASMMPNESTCFQNVSENESYLWHCRFGHLSYQ 444

Query: 244  GLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPI 65
            GLRTL  KKMV GLP+     +LCT+C+IGK HR+ + KKS WRAS  L LVHADICGPI
Sbjct: 445  GLRTLFYKKMVNGLPSIQIPKKLCTECLIGKQHRDSMSKKSLWRASNKLQLVHADICGPI 504

Query: 64   TPISNSNKRYTLCFIDDYSRK 2
             P SNSNKRY L FIDD++RK
Sbjct: 505  KPESNSNKRYFLSFIDDFTRK 525


>emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]
          Length = 1246

 Score =  433 bits (1114), Expect = e-138
 Identities = 215/378 (56%), Positives = 264/378 (69%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            NKMR +GE + +VTIVEKILR+LT+ +NY+V SIEESKD D+LTI+ELQ SL+VHEQKF+
Sbjct: 146  NKMRFHGEQIREVTIVEKILRSLTDNFNYIVCSIEESKDTDTLTINELQISLIVHEQKFH 205

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            +   EEQALKVT DE                      Q F+++TVECY+CH+LGHFQY C
Sbjct: 206  KKPVEEQALKVTTDERIGAGGHGRNGYRGRGRGRGR-QAFNRATVECYRCHQLGHFQYNC 264

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P WNKEANYAE  E +++LLM+YVE HE  R D WFLD GCSNHMCG+  MF +LDE F 
Sbjct: 265  PTWNKEANYAELEEHEDVLLMAYVEEHEAMRNDVWFLDFGCSNHMCGDARMFSELDESFR 324

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
              VKLGNNS++ V G+G V+L +NG   V T VFYVP+LKNNLLSIGQLQE+GLAI+I  
Sbjct: 325  QQVKLGNNSKITVKGRGNVRLQLNGFNYVLTVVFYVPELKNNLLSIGQLQEKGLAIMIHD 384

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLFSQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLR 236
            G CKIYHP+KGLIIQT MS NRMF L + +Q+                            
Sbjct: 385  GLCKIYHPNKGLIIQTAMSTNRMFTLLANKQE---------------------------- 416

Query: 235  TLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPI 56
              +N+ MV GLP+   +  +CTDC+ GK HR+PIPKKS+WRA++ L L+HA+ICGP+TP 
Sbjct: 417  --KNENMVHGLPHLLPTTLVCTDCLNGKQHRDPIPKKSAWRATKKLQLIHANICGPVTPT 474

Query: 55   SNSNKRYTLCFIDDYSRK 2
            SN  KRY LCFIDD+SRK
Sbjct: 475  SNGKKRYALCFIDDFSRK 492


>gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 722

 Score =  417 bits (1072), Expect = e-137
 Identities = 210/385 (54%), Positives = 268/385 (69%), Gaps = 7/385 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            N MR  GE M D  IVEKILRTL++KYNY+V SIEESKDI+ + +DELQSSL++HE K  
Sbjct: 142  NDMRGAGEAMEDGHIVEKILRTLSDKYNYIVCSIEESKDINEMMVDELQSSLLIHEHKIK 201

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            R    EQALKVT D                          ++  +ECY+C KLGHFQYEC
Sbjct: 202  RQEMTEQALKVTGD--------------------YSAPRVTEHLIECYRCRKLGHFQYEC 241

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P +   A   E ++E E+LLMSYVE+   +R++ WFLDSGCSNHM G+++ F +LD+ F 
Sbjct: 242  PTYANYAEDTELDDEQEMLLMSYVEMQGDKRDEIWFLDSGCSNHMSGDRKWFTELDQSFR 301

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
            HSVKLGN+ ++NV GKG V++ + G T+  T+VFY PDLK+NLLSIGQLQER L+ILIK 
Sbjct: 302  HSVKLGNDFKLNVMGKGNVRMKLGGRTVTITEVFYTPDLKSNLLSIGQLQERNLSILIKN 361

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLF-------SQQQQNKCLLTSSQNMSHLWHQRYGH 257
            G C IYH  +GLII+T +SANRMFVL        +   +  CL  +S+N++ LWHQR+GH
Sbjct: 362  GCCSIYHDTEGLIIRTTISANRMFVLTASIPVVDTNISKAACLNVTSENITSLWHQRFGH 421

Query: 256  LSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADI 77
            L+ KGLRTL  +KMV+GLP      +LCT C+ GK  R+  P+KS+WRAS+ L L+H+DI
Sbjct: 422  LNMKGLRTLAYRKMVQGLPILKNQFKLCTICMTGKQQRHSFPQKSTWRASKPLQLIHSDI 481

Query: 76   CGPITPISNSNKRYTLCFIDDYSRK 2
            CGPITP S+S+KRY L FIDDYSRK
Sbjct: 482  CGPITPESHSHKRYILTFIDDYSRK 506


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  438 bits (1127), Expect = e-136
 Identities = 215/386 (55%), Positives = 280/386 (72%), Gaps = 8/386 (2%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            N MR+ GED++DV IVEKILRTLT+K+NY+V SIEESKDID L++D LQSSL+VHEQKF 
Sbjct: 144  NDMRNYGEDVDDVKIVEKILRTLTDKWNYIVCSIEESKDIDQLSVDALQSSLLVHEQKFK 203

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXR--QNFSKSTVECYKCHKLGHFQY 782
             S  +E ALKVT ++                     R  Q  SK TVECYKCH+LGH+QY
Sbjct: 204  VSGEDEHALKVTHEQSYGGRGRGRTAFRGGRGQGRGRSSQPRSKETVECYKCHQLGHYQY 263

Query: 781  ECPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEK 602
            EC     +ANYA+  E +E++LM+YV+     R+  W++DSGCSNHMCG+  +F +L+E 
Sbjct: 264  EC-----QANYADLEESEEMVLMAYVDTFGGDRDVVWYIDSGCSNHMCGDSSLFCELEEG 318

Query: 601  FCHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILI 422
            F   V+LGN + MNV GKG V+L + GV  +  DV+YVP LKNNLLS+GQLQERGLA+L+
Sbjct: 319  FNKVVRLGNYASMNVVGKGSVRLNVKGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLM 378

Query: 421  KGGACKIYHPDKGLIIQTDMSANRMFVLFSQQQ------QNKCLLTSSQNMSHLWHQRYG 260
            +   C+IYH  KGL+ QT+M+ANRMFVL S  Q      + +C   ++ +++HLWH+R+G
Sbjct: 379  QSNECRIYHHTKGLVFQTNMTANRMFVLLSSTQSIKKENKEECFQVTTDDVAHLWHRRFG 438

Query: 259  HLSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHAD 80
            HLSYKGL+TLQ K MVRGLP+F   + +CT+C+ GK HR+ I ++S+WRAS+ L+LVHAD
Sbjct: 439  HLSYKGLKTLQTKNMVRGLPSFSVGEIVCTNCLKGKQHRDVISRRSTWRASEKLELVHAD 498

Query: 79   ICGPITPISNSNKRYTLCFIDDYSRK 2
            ICGPI+P S  NKRY +CFIDDYSRK
Sbjct: 499  ICGPISPFSEGNKRYFICFIDDYSRK 524


>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  434 bits (1117), Expect = e-134
 Identities = 216/381 (56%), Positives = 275/381 (72%), Gaps = 3/381 (0%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKF- 959
            NKM+ NGED  +  +VEKILR++T K++YVV SIEESKD+D+LTIDELQSSL+VHEQ+  
Sbjct: 168  NKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDLDTLTIDELQSSLLVHEQRMT 227

Query: 958  NRSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYE 779
            +    EEQALKVT  +                      + F K+T+ECY CHKLGHF +E
Sbjct: 228  SHVLEEEQALKVTHGDHSGSRGRGHGNYRGRGRGRNR-RFFDKATMECYNCHKLGHFAWE 286

Query: 778  CPEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKF 599
            CP     A YA++ EE  +LLM+YV+L++  RED WFLDSGCSNHMCG ++ F   D  F
Sbjct: 287  CPHRETGAYYAKNQEE--MLLMAYVDLNKTSREDTWFLDSGCSNHMCGKKDYFSDFDGTF 344

Query: 598  CHSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIK 419
              SVKLGNN+ M+V GKG V+L +N +T + T VFYVP+LKNNLLSIGQLQE+GL IL +
Sbjct: 345  RDSVKLGNNTSMSVLGKGNVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTILFQ 404

Query: 418  GGACKIYHPDKGLIIQTDMSANRMFVLF--SQQQQNKCLLTSSQNMSHLWHQRYGHLSYK 245
             G CK++H  KGLI+ T MS+NRMF+L+  SQ   + C  T ++++  LWH RYGHLS++
Sbjct: 405  HGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPISSTCFNTVTEDILQLWHCRYGHLSFQ 464

Query: 244  GLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPI 65
            GL+TLQ +KMV GLP F    +LC DC++GK HR+ IPKKS+WRA+++L LVHADICGPI
Sbjct: 465  GLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPI 524

Query: 64   TPISNSNKRYTLCFIDDYSRK 2
             PISNS KRY L F DD+SRK
Sbjct: 525  NPISNSKKRYLLTFTDDFSRK 545


>gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1110

 Score =  417 bits (1072), Expect = e-133
 Identities = 210/385 (54%), Positives = 268/385 (69%), Gaps = 7/385 (1%)
 Frame = -3

Query: 1135 NKMRSNGEDMNDVTIVEKILRTLTEKYNYVVVSIEESKDIDSLTIDELQSSLVVHEQKFN 956
            N MR  GE M D  IVEKILRTL++KYNY+V SIEESKDI+ + +DELQSSL++HE K  
Sbjct: 121  NDMRGAGEAMEDGHIVEKILRTLSDKYNYIVCSIEESKDINEMMVDELQSSLLIHEHKIK 180

Query: 955  RSSGEEQALKVTMDEXXXXXXXXXXXXXXXXXXXXXRQNFSKSTVECYKCHKLGHFQYEC 776
            R    EQALKVT D                          ++  +ECY+C KLGHFQYEC
Sbjct: 181  RQEMTEQALKVTGD--------------------YSAPRVTEHLIECYRCRKLGHFQYEC 220

Query: 775  PEWNKEANYAEHNEEDELLLMSYVELHEVRREDAWFLDSGCSNHMCGNQEMFVKLDEKFC 596
            P +   A   E ++E E+LLMSYVE+   +R++ WFLDSGCSNHM G+++ F +LD+ F 
Sbjct: 221  PTYANYAEDTELDDEQEMLLMSYVEMQGDKRDEIWFLDSGCSNHMSGDRKWFTELDQSFR 280

Query: 595  HSVKLGNNSRMNVTGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKG 416
            HSVKLGN+ ++NV GKG V++ + G T+  T+VFY PDLK+NLLSIGQLQER L+ILIK 
Sbjct: 281  HSVKLGNDFKLNVMGKGNVRMKLGGRTVTITEVFYTPDLKSNLLSIGQLQERNLSILIKN 340

Query: 415  GACKIYHPDKGLIIQTDMSANRMFVLF-------SQQQQNKCLLTSSQNMSHLWHQRYGH 257
            G C IYH  +GLII+T +SANRMFVL        +   +  CL  +S+N++ LWHQR+GH
Sbjct: 341  GCCSIYHDTEGLIIRTTISANRMFVLTASIPVVDTNISKAACLNVTSENITSLWHQRFGH 400

Query: 256  LSYKGLRTLQNKKMVRGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADI 77
            L+ KGLRTL  +KMV+GLP      +LCT C+ GK  R+  P+KS+WRAS+ L L+H+DI
Sbjct: 401  LNMKGLRTLAYRKMVQGLPILKNQFKLCTICMTGKQQRHSFPQKSTWRASKPLQLIHSDI 460

Query: 76   CGPITPISNSNKRYTLCFIDDYSRK 2
            CGPITP S+S+KRY L FIDDYSRK
Sbjct: 461  CGPITPESHSHKRYILTFIDDYSRK 485