BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00030184
         (1206 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020548722.1| RNA polymerase sigma factor sigD, chloroplas...   469   e-161
ref|XP_020548719.1| RNA polymerase sigma factor sigD, chloroplas...   456   e-155
gb|PIN23635.1| hypothetical protein CDL12_03626 [Handroanthus im...   438   e-149
ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD,...   438   e-149
ref|XP_012849779.1| PREDICTED: RNA polymerase sigma factor sigD,...   414   e-139
emb|CDP17818.1| unnamed protein product [Coffea canephora]            353   e-115
emb|CBI24961.3| unnamed protein product, partial [Vitis vinifera]     339   e-111
ref|XP_015063095.1| PREDICTED: RNA polymerase sigma factor sigD,...   342   e-111
ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD,...   342   e-111
ref|XP_019244276.1| PREDICTED: RNA polymerase sigma factor sigD,...   340   e-111
ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD,...   340   e-110
ref|XP_006345495.2| PREDICTED: RNA polymerase sigma factor sigD,...   339   e-110
ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD,...   338   e-110
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   339   e-110
gb|PHT60517.1| RNA polymerase sigma factor sigD, chloroplastic [...   336   e-109
gb|PHU30471.1| RNA polymerase sigma factor sigD, chloroplastic [...   333   e-108
gb|PHT94695.1| RNA polymerase sigma factor sigD, chloroplastic [...   332   e-107
ref|XP_019186188.1| PREDICTED: RNA polymerase sigma factor sigD,...   330   e-106
ref|XP_016556904.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   314   e-101
ref|XP_010103268.1| RNA polymerase sigma factor sigD, chloroplas...   314   e-100

>ref|XP_020548722.1| RNA polymerase sigma factor sigD, chloroplastic isoform X2 [Sesamum
            indicum]
          Length = 439

 Score =  469 bits (1207), Expect = e-161
 Identities = 246/320 (76%), Positives = 266/320 (83%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEM----GGQELSS 881
            E V  DED K VFVDKK GKSRFMT KEEA FSWYLKERARI  V+TE+    G +E+SS
Sbjct: 120  ERVKNDEDGKLVFVDKKEGKSRFMTSKEEARFSWYLKERARIVAVKTELLAETGRREVSS 179

Query: 880  SQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIG 701
            SQWAKAAGISQ  LD+ILCNGRESEE+ITS Y+RLVVS+ASSYQG+GLSLQDLTQEGSIG
Sbjct: 180  SQWAKAAGISQRNLDRILCNGRESEERITSCYRRLVVSIASSYQGKGLSLQDLTQEGSIG 239

Query: 700  LLRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLS 521
            LLRGAIKFNPERG KLSTYAYWWIRQ            IRLPGSIS LVPKICE    LS
Sbjct: 240  LLRGAIKFNPERGYKLSTYAYWWIRQSITRAIANKSKIIRLPGSISELVPKICEANAALS 299

Query: 520  RRLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEIT 341
            RRL+R PTYDEIAEAI AN +AVRLAIERNRSPISLD+ IT QG  MSLQDI+ GPDEIT
Sbjct: 300  RRLRRPPTYDEIAEAIDANSSAVRLAIERNRSPISLDEAITSQG-CMSLQDIVAGPDEIT 358

Query: 340  PEAMVKKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            PEAMVKKD LKPEIQKLLK LCDREAHIL+LHYGLNG+ PWSFEEI   L LSRERVRQI
Sbjct: 359  PEAMVKKDQLKPEIQKLLKPLCDREAHILRLHYGLNGETPWSFEEIGRVLELSRERVRQI 418

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            NSAAL K+R T+++ DLK+F
Sbjct: 419  NSAALLKIRQTSKVEDLKHF 438


>ref|XP_020548719.1| RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Sesamum
            indicum]
          Length = 470

 Score =  456 bits (1173), Expect = e-155
 Identities = 245/350 (70%), Positives = 266/350 (76%), Gaps = 34/350 (9%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEM----GGQELSS 881
            E V  DED K VFVDKK GKSRFMT KEEA FSWYLKERARI  V+TE+    G +E+SS
Sbjct: 120  ERVKNDEDGKLVFVDKKEGKSRFMTSKEEARFSWYLKERARIVAVKTELLAETGRREVSS 179

Query: 880  SQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIG 701
            SQWAKAAGISQ  LD+ILCNGRESEE+ITS Y+RLVVS+ASSYQG+GLSLQDLTQEGSIG
Sbjct: 180  SQWAKAAGISQRNLDRILCNGRESEERITSCYRRLVVSIASSYQGKGLSLQDLTQEGSIG 239

Query: 700  LLRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLS 521
            LLRGAIKFNPERG KLSTYAYWWIRQ            IRLPGSIS LVPKICE    LS
Sbjct: 240  LLRGAIKFNPERGYKLSTYAYWWIRQSITRAIANKSKIIRLPGSISELVPKICEANAALS 299

Query: 520  RRLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQG---------------- 389
            RRL+R PTYDEIAEAI AN +AVRLAIERNRSPISLD+ IT QG                
Sbjct: 300  RRLRRPPTYDEIAEAIDANSSAVRLAIERNRSPISLDEAITSQGCMSLQVLSTPVLYIIL 359

Query: 388  --------------RSMSLQDIIPGPDEITPEAMVKKDMLKPEIQKLLKCLCDREAHILK 251
                          R+  LQDI+ GPDEITPEAMVKKD LKPEIQKLLK LCDREAHIL+
Sbjct: 360  HYFYFYNWDRHRRTRTHRLQDIVAGPDEITPEAMVKKDQLKPEIQKLLKPLCDREAHILR 419

Query: 250  LHYGLNGDAPWSFEEIATFLNLSRERVRQINSAALTKLRTTTEIHDLKYF 101
            LHYGLNG+ PWSFEEI   L LSRERVRQINSAAL K+R T+++ DLK+F
Sbjct: 420  LHYGLNGETPWSFEEIGRVLELSRERVRQINSAALLKIRQTSKVEDLKHF 469


>gb|PIN23635.1| hypothetical protein CDL12_03626 [Handroanthus impetiginosus]
          Length = 411

 Score =  438 bits (1127), Expect = e-149
 Identities = 231/315 (73%), Positives = 252/315 (80%), Gaps = 4/315 (1%)
 Frame = -3

Query: 1033 DEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTE----MGGQELSSSQWAK 866
            DE ++ VF D K G+SR MTPKEEA  SWYLKERARIE VR E    MGG  LS+SQWAK
Sbjct: 97   DEGDEVVFGDNKGGRSRVMTPKEEARCSWYLKERARIEAVRAELEADMGGHGLSTSQWAK 156

Query: 865  AAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGA 686
            AAGISQ KLDKILCNGRE EE ITS Y+RLVVSVASS+QGRGLSL+DLTQEGSIGLL GA
Sbjct: 157  AAGISQRKLDKILCNGRECEEIITSCYRRLVVSVASSHQGRGLSLRDLTQEGSIGLLHGA 216

Query: 685  IKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQR 506
             KFNPERG KLSTYAYWWIRQ            IRLPGSIS  VPKICE   VLS +L R
Sbjct: 217  TKFNPERGYKLSTYAYWWIRQAITRAIAKKSKLIRLPGSISQRVPKICEANNVLSGKLGR 276

Query: 505  FPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMV 326
            FPTY+EIAEAI  N + VRLAIERNRSP+SLDQ IT QG  MSLQDIIPGP+EITPE MV
Sbjct: 277  FPTYEEIAEAIDVNASVVRLAIERNRSPVSLDQAITTQG-CMSLQDIIPGPEEITPEIMV 335

Query: 325  KKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAAL 146
            KKD+LKPEIQ LLK LC REA +L+LHYGLNG+ PWSFEEI     LSRER+RQINS+AL
Sbjct: 336  KKDLLKPEIQMLLKPLCYREAQVLRLHYGLNGETPWSFEEIGRLFKLSRERIRQINSSAL 395

Query: 145  TKLRTTTEIHDLKYF 101
            +KLR T++I DLKYF
Sbjct: 396  SKLRKTSQIDDLKYF 410


>ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X2
            [Erythranthe guttata]
          Length = 436

 Score =  438 bits (1127), Expect = e-149
 Identities = 232/330 (70%), Positives = 265/330 (80%), Gaps = 11/330 (3%)
 Frame = -3

Query: 1057 SILECVNTDEDE-----KFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEMGGQ 893
            ++LEC+N D+D+     KF+F DK +GKSRFM PKEEA FSW+L+ERARIE VRTE   +
Sbjct: 107  NLLECMNIDDDDDYQNHKFLFSDKNSGKSRFMNPKEEAKFSWHLQERARIEAVRTEALAK 166

Query: 892  ------ELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSL 731
                  ELSS QWA AAGISQ  LD+I+ NG++SE++IT SY RLVVSVASSYQG+GLSL
Sbjct: 167  MEEEEHELSSIQWANAAGISQKNLDRIIWNGKQSEKRITKSYLRLVVSVASSYQGKGLSL 226

Query: 730  QDLTQEGSIGLLRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVP 551
            QDLTQEGSIGLLRGAIKFNPE+G KLSTYAYWWIRQ            IRLPGSI  LVP
Sbjct: 227  QDLTQEGSIGLLRGAIKFNPEKGYKLSTYAYWWIRQAITRAITKKSKIIRLPGSIHELVP 286

Query: 550  KICETITVLSRRLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQ 371
            KICE   VLSR+L+RFPTY+EIAE I AN ++VRLAIERN+SPISLDQ  T +G SMSLQ
Sbjct: 287  KICEANAVLSRKLRRFPTYEEIAEEIDANASSVRLAIERNKSPISLDQASTSRG-SMSLQ 345

Query: 370  DIIPGPDEITPEAMVKKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFL 191
             IIPGPDE+TPEAMVKK+ LKPEI+KLL+ LCDREAH+L+LHYGLNG AP SFEEI   L
Sbjct: 346  AIIPGPDEMTPEAMVKKEALKPEIEKLLEPLCDREAHVLRLHYGLNGGAPRSFEEIGKLL 405

Query: 190  NLSRERVRQINSAALTKLRTTTEIHDLKYF 101
             LSRERVRQINS+AL+KLR   EI DLKYF
Sbjct: 406  ELSRERVRQINSSALSKLREIVEIDDLKYF 435


>ref|XP_012849779.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Erythranthe guttata]
          Length = 487

 Score =  414 bits (1065), Expect = e-139
 Identities = 232/381 (60%), Positives = 265/381 (69%), Gaps = 62/381 (16%)
 Frame = -3

Query: 1057 SILECVNTDEDE-----KFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEMGGQ 893
            ++LEC+N D+D+     KF+F DK +GKSRFM PKEEA FSW+L+ERARIE VRTE   +
Sbjct: 107  NLLECMNIDDDDDYQNHKFLFSDKNSGKSRFMNPKEEAKFSWHLQERARIEAVRTEALAK 166

Query: 892  ------ELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSL 731
                  ELSS QWA AAGISQ  LD+I+ NG++SE++IT SY RLVVSVASSYQG+GLSL
Sbjct: 167  MEEEEHELSSIQWANAAGISQKNLDRIIWNGKQSEKRITKSYLRLVVSVASSYQGKGLSL 226

Query: 730  QDLTQEGSIGLLRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVP 551
            QDLTQEGSIGLLRGAIKFNPE+G KLSTYAYWWIRQ            IRLPGSI  LVP
Sbjct: 227  QDLTQEGSIGLLRGAIKFNPEKGYKLSTYAYWWIRQAITRAITKKSKIIRLPGSIHELVP 286

Query: 550  KICETITVLSRRLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMS-- 377
            KICE   VLSR+L+RFPTY+EIAE I AN ++VRLAIERN+SPISLDQ  T +G SMS  
Sbjct: 287  KICEANAVLSRKLRRFPTYEEIAEEIDANASSVRLAIERNKSPISLDQASTSRG-SMSLQ 345

Query: 376  -------------------------------------------------LQDIIPGPDEI 344
                                                             LQ IIPGPDE+
Sbjct: 346  VLSIQFRKISSHFFTSGTLMISYSGGARIGPPIPQPRIFFFVNSSFYDVLQAIIPGPDEM 405

Query: 343  TPEAMVKKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQ 164
            TPEAMVKK+ LKPEI+KLL+ LCDREAH+L+LHYGLNG AP SFEEI   L LSRERVRQ
Sbjct: 406  TPEAMVKKEALKPEIEKLLEPLCDREAHVLRLHYGLNGGAPRSFEEIGKLLELSRERVRQ 465

Query: 163  INSAALTKLRTTTEIHDLKYF 101
            INS+AL+KLR   EI DLKYF
Sbjct: 466  INSSALSKLREIVEIDDLKYF 486


>emb|CDP17818.1| unnamed protein product [Coffea canephora]
          Length = 445

 Score =  353 bits (905), Expect = e-115
 Identities = 184/312 (58%), Positives = 232/312 (74%), Gaps = 5/312 (1%)
 Frame = -3

Query: 1030 EDEKFVF--VDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSSQWAK 866
            E+EK +     K     +++TPK+EA ++  LKE AR+E VR    E    E++ +QWAK
Sbjct: 128  ENEKVIMNVAIKPTNSGQYLTPKQEAEYTLCLKEEARVEAVRKRIEETTENEVTFAQWAK 187

Query: 865  AAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGA 686
            AAG+S++ LDK+LC+GRE++E+IT  Y+RLV+SVASSYQG+GLSLQDL QEG++GLL GA
Sbjct: 188  AAGMSKNSLDKVLCDGREAQERITRCYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGA 247

Query: 685  IKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQR 506
             KFNPE+G KLSTY YWWIRQ             RLPGS+S LVP+ICE   VLSRRL++
Sbjct: 248  KKFNPEKGYKLSTYVYWWIRQAITKAIAKKSKITRLPGSVSELVPRICEANAVLSRRLRK 307

Query: 505  FPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMV 326
             PT  EIAEA+  + + V LA+ERNR PISLDQPI   G SMSLQ+I+ GPDE TPEA+V
Sbjct: 308  LPTCQEIAEAVKRDMSTVWLALERNREPISLDQPIVA-GASMSLQEIVAGPDETTPEAIV 366

Query: 325  KKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAAL 146
            KK  +K +I+KLLK LCDRE +IL+L+YGLNG+ P SFEEI   L LSRERVRQI+  AL
Sbjct: 367  KKQFMKRDIEKLLKGLCDREVNILRLYYGLNGNTPQSFEEIGRQLELSRERVRQISCTAL 426

Query: 145  TKLRTTTEIHDL 110
            TKLR T+ ++DL
Sbjct: 427  TKLRQTSMVNDL 438


>emb|CBI24961.3| unnamed protein product, partial [Vitis vinifera]
          Length = 319

 Score =  339 bits (869), Expect = e-111
 Identities = 176/302 (58%), Positives = 221/302 (73%), Gaps = 3/302 (0%)
 Frame = -3

Query: 997 AGKSRFMTPKEEATFSWYLKERARIEGVR---TEMGGQELSSSQWAKAAGISQHKLDKIL 827
           A +S  +TP+EEA F   LKE A +E  R    E    E +S+QWA+A GI +  LDK+L
Sbjct: 17  AARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKML 76

Query: 826 CNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERGNKLST 647
           CNGRES E+I  SY+RLVVS+A+ YQG+GLSLQDL QEGSIGLLRGA +F+P+RG KLST
Sbjct: 77  CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLST 136

Query: 646 YAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQRFPTYDEIAEAIGA 467
           Y YWWIRQ            IRLPGSI  +V KI E  TVLSRRL+R PTYDEIAE I  
Sbjct: 137 YVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDV 196

Query: 466 NPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLKPEIQKLL 287
           N + VRL  ER+R+PIS+DQ +T QG  M+LQ+IIPGPDE TP+ MVK+ ++K E+++ L
Sbjct: 197 NVSTVRLVSERSRTPISVDQAVTSQG-CMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL 255

Query: 286 KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAALTKLRTTTEIHDLK 107
             LC+REA+IL+L++G+NG+ P SFEEI   + LSRERVRQINS AL+KLR T+ +  LK
Sbjct: 256 NTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLK 315

Query: 106 YF 101
            +
Sbjct: 316 LY 317


>ref|XP_015063095.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Solanum
            pennellii]
          Length = 423

 Score =  342 bits (878), Expect = e-111
 Identities = 185/320 (57%), Positives = 234/320 (73%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC+  ++++K +F  K      ++T KEEA +SWYLKE ARIE +R    E    +LSS 
Sbjct: 104  ECLEMEKEDK-IFNLKPLKTGFYLTHKEEAKYSWYLKEEARIEILRKMVEETSEIDLSSK 162

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  +LDK+L N +ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 163  QLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGL 222

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR
Sbjct: 223  LHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNANTELSR 282

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P+YDEIAEA+G + + VRL  ERNR+PIS+DQ +T QG  MSLQ+II GP++ TP
Sbjct: 283  KLRRMPSYDEIAEALGMDVSTVRLVTERNRAPISIDQIVTTQG-YMSLQNIISGPEDTTP 341

Query: 337  EAMVKKDMLKPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E  VK+ M+K +++K+L+  LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQI
Sbjct: 342  EENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQSFEEIGRVLKLSRERIRQI 401

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ + + K +
Sbjct: 402  NCTALSKLRESSMLDNFKMY 421


>ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 423

 Score =  342 bits (878), Expect = e-111
 Identities = 185/320 (57%), Positives = 234/320 (73%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC+  ++++  +F  K      ++T KEEA +SWYLKE ARIE +R    E    +LSS 
Sbjct: 104  ECLEMEKEDN-IFNLKPLKTGFYLTHKEEAKYSWYLKEEARIEILRKMVEETSEIDLSSK 162

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  +LDK+L N +ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 163  QLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGL 222

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR
Sbjct: 223  LHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNANTELSR 282

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P+YDEIAEA+G + + VRL IERNR+PIS+DQ +T QG  MSLQ+II GP++ TP
Sbjct: 283  KLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTTQG-YMSLQNIISGPEDTTP 341

Query: 337  EAMVKKDMLKPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E  VK+ M+K +++K+L+  LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQI
Sbjct: 342  EENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQSFEEIGRVLKLSRERIRQI 401

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ + + K +
Sbjct: 402  NCTALSKLRESSMLDNFKMY 421


>ref|XP_019244276.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nicotiana
            attenuata]
 gb|OIT07758.1| rna polymerase sigma factor sigd, chloroplastic [Nicotiana attenuata]
          Length = 427

 Score =  340 bits (873), Expect = e-111
 Identities = 182/319 (57%), Positives = 233/319 (73%), Gaps = 4/319 (1%)
 Frame = -3

Query: 1045 CVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSSQ 875
            C++ ++++K + + K      ++T KEE+ +SWYLKE AR+E +R    E    EL+ +Q
Sbjct: 109  CLDMEKEDK-ISISKPVKTGLYLTLKEESEYSWYLKEEARMETLRKRVEETSEIELNPNQ 167

Query: 874  WAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLL 695
             AKAAG+S+ +LDK+L N + S++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGLL
Sbjct: 168  LAKAAGMSRRRLDKVLVNAKISQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLL 227

Query: 694  RGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRR 515
             GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR+
Sbjct: 228  HGAKKFNPKKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNANTELSRK 287

Query: 514  LQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPE 335
            LQR P+YDEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSLQDII GP++I PE
Sbjct: 288  LQRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQIVTSQG-YMSLQDIISGPEDILPE 346

Query: 334  AMVKKDMLKPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 158
             +VK+ M+K +++KLL+  LC REA ILKLH+GLNGD P SFEEI   L LSRER+RQIN
Sbjct: 347  EIVKRQMMKQDLEKLLQNVLCHREAKILKLHFGLNGDTPQSFEEIGKVLKLSRERIRQIN 406

Query: 157  SAALTKLRTTTEIHDLKYF 101
              AL+KLR +T +   K +
Sbjct: 407  CTALSKLRESTMLDSFKMY 425


>ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nicotiana
            sylvestris]
 ref|XP_016513390.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Nicotiana tabacum]
          Length = 426

 Score =  340 bits (872), Expect = e-110
 Identities = 182/320 (56%), Positives = 231/320 (72%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC++ D+ +K + + K      ++T KEE+ +SWYLKE AR+E +R    E    E++ +
Sbjct: 107  ECLDMDKGDK-ISISKPVKTGLYLTLKEESEYSWYLKEEARMETLRKRVEETSEIEVNPN 165

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S+ +LDK+L N + S++KI   Y  LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 166  QLAKAAGMSRRRLDKVLINAKISQKKIIKCYTGLVVSVAASYQGKGLSLQDLIQEGSIGL 225

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP +G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR
Sbjct: 226  LHGAKKFNPNKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNANTELSR 285

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +LQR P+YDEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSLQDII GP++I P
Sbjct: 286  KLQRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQIVTSQG-YMSLQDIISGPEDILP 344

Query: 337  EAMVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E ++K+ M+K +++KLL   LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQI
Sbjct: 345  EEILKRQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIGKVLKLSRERIRQI 404

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ +   K +
Sbjct: 405  NCTALSKLRESSMLDSFKMY 424


>ref|XP_006345495.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Solanum
            tuberosum]
          Length = 423

 Score =  339 bits (870), Expect = e-110
 Identities = 183/320 (57%), Positives = 232/320 (72%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC+  ++ ++ +   K      ++T +EEA +SWYLKE ARIE +R    E    +LSS 
Sbjct: 104  ECLEMEKGDR-ILNSKPLKTGFYLTHEEEAKYSWYLKEEARIEILRKMVEETSEIDLSSK 162

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  +LDK+L N +ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 163  QLAKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGL 222

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR
Sbjct: 223  LHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNANTELSR 282

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P+YDEIAEA+G + + VRL IERNR+PIS+DQ +T QG  MSLQ+II GP++ TP
Sbjct: 283  KLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTSQG-YMSLQNIISGPEDTTP 341

Query: 337  EAMVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E  VK+ M+K +++K+L   LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQI
Sbjct: 342  EENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQSFEEIGRVLKLSRERIRQI 401

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ + + K +
Sbjct: 402  NCTALSKLRESSMLDNFKMY 421


>ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nicotiana
            tomentosiformis]
 ref|XP_016469693.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Nicotiana tabacum]
          Length = 416

 Score =  338 bits (868), Expect = e-110
 Identities = 182/314 (57%), Positives = 227/314 (72%), Gaps = 4/314 (1%)
 Frame = -3

Query: 1030 EDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSSQWAKAA 860
            E E  + + K      ++T KEE+ +SWYLKE ARIE +R    E    EL+ +Q AKAA
Sbjct: 102  EKEDKISISKPVKTGLYLTLKEESEYSWYLKEEARIETLRKRVEETSEIELNPNQLAKAA 161

Query: 859  GISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIK 680
            G+S+ +LDK+L N + S++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGLL GA K
Sbjct: 162  GMSRRRLDKLLVNAKISQKKIIKCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKK 221

Query: 679  FNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQRFP 500
            FNP++G KLSTYAYWWIRQ            IRLPGSIS LVPKIC   T LSR+L+R P
Sbjct: 222  FNPKKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNANTELSRKLRRMP 281

Query: 499  TYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKK 320
            +YDEIAEA+  + + VRL IERNR+PIS+DQ +T +G  MSLQDII GP++I PE +VK+
Sbjct: 282  SYDEIAEALDMDVSTVRLVIERNRAPISIDQIVTSKG-YMSLQDIISGPEDIIPEEIVKR 340

Query: 319  DMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAALT 143
             M+K +++KLL   LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQIN  AL+
Sbjct: 341  QMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIGKVLKLSRERIRQINCTALS 400

Query: 142  KLRTTTEIHDLKYF 101
            KLR +T +   K +
Sbjct: 401  KLRESTMLDSFKMY 414


>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 442

 Score =  339 bits (869), Expect = e-110
 Identities = 176/302 (58%), Positives = 221/302 (73%), Gaps = 3/302 (0%)
 Frame = -3

Query: 997  AGKSRFMTPKEEATFSWYLKERARIEGVR---TEMGGQELSSSQWAKAAGISQHKLDKIL 827
            A +S  +TP+EEA F   LKE A +E  R    E    E +S+QWA+A GI +  LDK+L
Sbjct: 140  AARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKML 199

Query: 826  CNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERGNKLST 647
            CNGRES E+I  SY+RLVVS+A+ YQG+GLSLQDL QEGSIGLLRGA +F+P+RG KLST
Sbjct: 200  CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLST 259

Query: 646  YAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQRFPTYDEIAEAIGA 467
            Y YWWIRQ            IRLPGSI  +V KI E  TVLSRRL+R PTYDEIAE I  
Sbjct: 260  YVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDV 319

Query: 466  NPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLKPEIQKLL 287
            N + VRL  ER+R+PIS+DQ +T QG  M+LQ+IIPGPDE TP+ MVK+ ++K E+++ L
Sbjct: 320  NVSTVRLVSERSRTPISVDQAVTSQG-CMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL 378

Query: 286  KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAALTKLRTTTEIHDLK 107
              LC+REA+IL+L++G+NG+ P SFEEI   + LSRERVRQINS AL+KLR T+ +  LK
Sbjct: 379  NTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLK 438

Query: 106  YF 101
             +
Sbjct: 439  LY 440


>gb|PHT60517.1| RNA polymerase sigma factor sigD, chloroplastic [Capsicum baccatum]
          Length = 420

 Score =  336 bits (862), Expect = e-109
 Identities = 181/320 (56%), Positives = 230/320 (71%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC++ D+ +K +F  K      ++T KEE+ +SWYLKE ARIE +R    +    EL+ +
Sbjct: 101  ECLDMDKGDK-IFNSKSVKTGFYLTHKEESEYSWYLKEEARIEILRKMVEKTSEIELNQN 159

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  KLDK+L NG+ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 160  QLAKAAGMSTKKLDKLLVNGKESQKKIIQCYKGLVVSVAASYQGKGLSLQDLIQEGSIGL 219

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS L PKIC     LS 
Sbjct: 220  LHGAKKFNPKKGYKLSTYAYWWIRQAITRAVANKSRLIRLPGSISELFPKICNAKAELSI 279

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P++DEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSLQDII G ++ TP
Sbjct: 280  KLRRMPSFDEIAEALDLDVSTVRLVIERNRAPISIDQIVTSQGH-MSLQDIISGQEDTTP 338

Query: 337  EAMVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E +VK+ M+K +++K+L   LCDREA ILKLH+GLNGD P SFEEI   L LSRER+RQI
Sbjct: 339  EEIVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDTPQSFEEIGRVLKLSRERIRQI 398

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ +   K +
Sbjct: 399  NCTALSKLRESSMLDSFKMY 418


>gb|PHU30471.1| RNA polymerase sigma factor sigD, chloroplastic [Capsicum chinense]
          Length = 418

 Score =  333 bits (853), Expect = e-108
 Identities = 179/320 (55%), Positives = 230/320 (71%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC++ D+ +K +F  K      ++T KEE+ +SWYLKE ARIE +R    +    EL+ +
Sbjct: 99   ECLDMDKGDK-IFNSKSVKTGFYLTHKEESEYSWYLKEEARIEILRKMVEKTSEIELNQN 157

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  KLDK+L NG+ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 158  QLAKAAGMSTKKLDKLLVNGKESQKKIIQCYKGLVVSVAASYQGKGLSLQDLIQEGSIGL 217

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS L PKIC     LS 
Sbjct: 218  LHGAKKFNPKKGYKLSTYAYWWIRQAITRAVANKSRLIRLPGSISELFPKICNAKAELSI 277

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P+YDEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSL+DII G ++ TP
Sbjct: 278  KLRRMPSYDEIAEALDLDVSTVRLVIERNRAPISIDQIVTSQGH-MSLKDIISGQEDTTP 336

Query: 337  EAMVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E +V++ M+K +++K+L   LCDREA ILKL++GLNGD P SFEEI   L LSRER+RQI
Sbjct: 337  EEIVRRQMMKQDLEKILHNVLCDREAKILKLYFGLNGDTPQSFEEIGRVLKLSRERIRQI 396

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ +   K +
Sbjct: 397  NCTALSKLRESSMLDSFKMY 416


>gb|PHT94695.1| RNA polymerase sigma factor sigD, chloroplastic [Capsicum annuum]
          Length = 420

 Score =  332 bits (852), Expect = e-107
 Identities = 179/320 (55%), Positives = 230/320 (71%), Gaps = 4/320 (1%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSS 878
            EC++ D+ +K +F  K      ++T KEE+ +SWYLKE ARIE +R    +    EL+ +
Sbjct: 101  ECLDMDKGDK-IFNSKSVKTGFYLTHKEESEYSWYLKEEARIEILRKMVEKTSEIELNQN 159

Query: 877  QWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGL 698
            Q AKAAG+S  KLDK+L NG+ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGL
Sbjct: 160  QLAKAAGMSTKKLDKLLVNGKESQKKIIQCYKGLVVSVAASYQGKGLSLQDLIQEGSIGL 219

Query: 697  LRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSR 518
            L GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS L PKIC     LS 
Sbjct: 220  LHGAKKFNPKKGYKLSTYAYWWIRQAITRAVANKSRLIRLPGSISELFPKICNAKAELSI 279

Query: 517  RLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITP 338
            +L+R P++DEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSL+DII G ++ TP
Sbjct: 280  KLRRMPSFDEIAEALDLDVSTVRLVIERNRAPISIDQIVTSQGH-MSLKDIISGQEDTTP 338

Query: 337  EAMVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 161
            E +VK+ M+K +++K+L   LCDREA ILKL++GLNGD P SFEEI   L LSRER+RQI
Sbjct: 339  EEIVKRQMMKQDLEKILHNVLCDREAKILKLYFGLNGDTPQSFEEIGRVLKLSRERIRQI 398

Query: 160  NSAALTKLRTTTEIHDLKYF 101
            N  AL+KLR ++ +   K +
Sbjct: 399  NCTALSKLRESSMLDSFKMY 418


>ref|XP_019186188.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Ipomoea
            nil]
          Length = 431

 Score =  330 bits (846), Expect = e-106
 Identities = 178/314 (56%), Positives = 230/314 (73%), Gaps = 5/314 (1%)
 Frame = -3

Query: 1033 DEDEKFVFVDKKAGKSR-FMTPKEEATFSWYLKERARIEGVRTEM---GGQELSSSQWAK 866
            DE E+   V  + GKS  +++P+E A  SWYLKE AR+E VR  +   GG +L+++QWAK
Sbjct: 115  DEVEEKQLVHFRPGKSGLYLSPEEVAECSWYLKEEARVEAVRRSIEGAGGVKLTTNQWAK 174

Query: 865  AAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGA 686
            AAG++   L++IL N ++S+E I  SY+ LVVS+AS YQGRGLSLQDL QEGSIGLL GA
Sbjct: 175  AAGMNTKTLNRILFNAKKSKELIIRSYKALVVSIASLYQGRGLSLQDLIQEGSIGLLHGA 234

Query: 685  IKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRLQR 506
             KF+PERG KLSTY YWWIRQ            IRLPG +S LVPKIC T  VL+R+L R
Sbjct: 235  KKFDPERGFKLSTYVYWWIRQAILRAIANKSRVIRLPGRVSELVPKICNTNAVLTRKLHR 294

Query: 505  FPTYDEIAEAIGANPTAVRLAIER-NRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAM 329
            FPT+ EIAEA+  N + VRL ++R + +PIS+D+PIT +G + SLQ+IIPGP+++TPE M
Sbjct: 295  FPTHHEIAEALEMNSSTVRLIMQRTSTAPISIDEPITPRGHA-SLQNIIPGPEDLTPEEM 353

Query: 328  VKKDMLKPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSAA 149
            VKK ++K +IQ +L  LCDREA IL+L+YGLNG+ P SFEEI    NLSRERVRQI+  A
Sbjct: 354  VKKQLMKTQIQNILGVLCDREASILRLYYGLNGNRPHSFEEIGWSFNLSRERVRQISYDA 413

Query: 148  LTKLRTTTEIHDLK 107
            + KLR +  + D+K
Sbjct: 414  MFKLRHSNVVDDMK 427


>ref|XP_016556904.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigD,
            chloroplastic [Capsicum annuum]
          Length = 407

 Score =  314 bits (805), Expect = e-101
 Identities = 172/318 (54%), Positives = 222/318 (69%), Gaps = 2/318 (0%)
 Frame = -3

Query: 1048 ECVNTDEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QELSSSQW 872
            EC++ D+ +K +F  K      ++T KEE+ +SWYLKE ARIE +R  +    E+  +Q 
Sbjct: 98   ECLDMDKGDK-IFNSKSVKTGFYLTHKEESEYSWYLKEEARIEILRKMVEKTSEIELNQ- 155

Query: 871  AKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLR 692
                     KLDK+L NG+ES++KI   Y+ LVVSVA+SYQG+GLSLQDL QEGSIGLL 
Sbjct: 156  -------NXKLDKLLVNGKESQKKIIQCYKGLVVSVAASYQGKGLSLQDLIQEGSIGLLH 208

Query: 691  GAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRRL 512
            GA KFNP++G KLSTYAYWWIRQ            IRLPGSIS L PKIC     LS +L
Sbjct: 209  GAKKFNPKKGYKLSTYAYWWIRQAITRAVANKSRLIRLPGSISELFPKICNAKAELSIKL 268

Query: 511  QRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEA 332
            +R P++DEIAEA+  + + VRL IERNR+PIS+DQ +T QG  MSL+DII G ++ TPE 
Sbjct: 269  RRMPSFDEIAEALDLDVSTVRLVIERNRAPISIDQIVTSQGH-MSLKDIISGQEDTTPEE 327

Query: 331  MVKKDMLKPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINS 155
            +VK+ M+K +++K+L   LCDREA ILKL++GLNGD P SFEEI   L LSRER+RQIN 
Sbjct: 328  IVKRQMMKQDLEKILHNVLCDREAKILKLYFGLNGDTPQSFEEIGRVLKLSRERIRQINC 387

Query: 154  AALTKLRTTTEIHDLKYF 101
             AL+KLR ++ +   K +
Sbjct: 388  TALSKLRESSMLDSFKMY 405


>ref|XP_010103268.1| RNA polymerase sigma factor sigD, chloroplastic [Morus notabilis]
 gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 422

 Score =  314 bits (805), Expect = e-100
 Identities = 170/324 (52%), Positives = 227/324 (70%), Gaps = 9/324 (2%)
 Frame = -3

Query: 1051 LECVNTDE-----DEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRTEMGGQE- 890
            LE ++TDE     D +F     K G   +++P+EEA     LKE A++E  R  M   E 
Sbjct: 97   LELLDTDEKSDGEDMRFSIGPMKLG---YLSPREEAECCLILKEGAKLEATRLRMTNSED 153

Query: 889  --LSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQ 716
               +S + AKA G+    +DK+LC+ RES+E+I+ SY+RLVVSVA+ YQG+GLS  DL Q
Sbjct: 154  HEPTSKELAKAMGMEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQ 213

Query: 715  EGSIGLLRGAIKFNPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICET 536
            EGS+GLLRGA KF+P+RGNKLSTY YWWIRQ            +RLPG++  +V K+ E 
Sbjct: 214  EGSVGLLRGAQKFDPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLPGNMCGIVAKVTEA 273

Query: 535  ITVLSRRLQRFPTYDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPG 356
              VL++RL+RFPTYDEIA+ +G + + VRL  ER R PISLD+ IT +G  M+LQ+IIPG
Sbjct: 274  NNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITERG-CMTLQEIIPG 332

Query: 355  PDEITPEAMVKKDMLKPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSR 179
            P+EI+PE MV+K ++K EI+KLLK  L DREA++L+LH+GL+GD P S EEI   L LSR
Sbjct: 333  PEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLSCEEIGRLLKLSR 392

Query: 178  ERVRQINSAALTKLRTTTEIHDLK 107
            ER+RQIN  AL+KL+ T  ++DL+
Sbjct: 393  ERIRQINGIALSKLQQTNIVNDLR 416