BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00029893
         (749 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposo...   341   e-108
emb|CAN77201.1| hypothetical protein VITISV_002545 [Vitis vinifera]   329   e-107
gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposo...   342   e-107
gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]    346   e-107
gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-...   328   e-107
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-...   333   e-107
gb|KYP49204.1| Retrovirus-related Pol polyprotein from transposo...   319   e-106
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc...   333   e-106
gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subc...   327   e-105
emb|CAE04777.3| OSJNBb0115I21.5 [Oryza sativa Japonica Group]         329   e-105
emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group]         322   e-105
gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subc...   333   e-104
emb|CAH66262.1| OSIGBa0135A16.5 [Oryza sativa]                        319   e-104
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc...   333   e-103
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   333   e-103
emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa Japonica Group]         335   e-103
gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subc...   328   e-103
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         335   e-103
emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]         332   e-103
gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sat...   333   e-103

>gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 900

 Score =  341 bits (874), Expect = e-108
 Identities = 157/249 (63%), Positives = 202/249 (81%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+LEEEIYM QPEG  V G+E KVC+L+KSLYGLKQAP QWHEKFD V++++G
Sbjct: 491  VKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDG 550

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F  +  D+CVY K ++D CVI+CLYVDD+LIFG+   ++  TK FL+++FDMKD+G   V
Sbjct: 551  FSSSSADRCVYTKSMNDDCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASV 610

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            ILG+K++R  +SI LSQ HY+E+LL KF+Y     V+TPYD + +L++NKG S++Q +Y+
Sbjct: 611  ILGVKVVRKGDSILLSQGHYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYA 670

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSLLHLMN +RPDIAYAV RL+RYTH PN  HW+AL RL +YL+GT+DY I ++GFP
Sbjct: 671  QIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFP 730

Query: 721  DVLEGYSDA 747
             VLEGYSDA
Sbjct: 731  AVLEGYSDA 739


>emb|CAN77201.1| hypothetical protein VITISV_002545 [Vitis vinifera]
          Length = 515

 Score =  329 bits (844), Expect = e-107
 Identities = 157/249 (63%), Positives = 195/249 (78%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKT FLNGDLEEEIYM QPEG VV  +EKKVCKLVKSLYGLKQAP QW  KFD V+++NG
Sbjct: 176 VKTTFLNGDLEEEIYMEQPEGRVVPRKEKKVCKLVKSLYGLKQAPKQWRNKFDHVLVTNG 235

Query: 181 FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
           + IN  DKC+Y K  D+TCV++ LYVDD+LIFG+++ ++ +TKKFLS  FDMK+L   +V
Sbjct: 236 YSINDADKCIYSKYEDNTCVVIYLYVDDMLIFGTSLEIVCETKKFLSPKFDMKNLEKAEV 295

Query: 361 ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
           ILGIKI R  N + LSQ HY+EK+L KF +     VSTPYDP   L+KN+  SV+Q +++
Sbjct: 296 ILGIKITRPPNELKLSQEHYVEKILRKFEHFYCKLVSTPYDPISLLKKNREHSVAQIEHA 355

Query: 541 QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
           QIIGSL++ MN+TRPDIAYAVGRL+RYT SPN  HW  + R+ KYL+GTI+Y + F GFP
Sbjct: 356 QIIGSLMYFMNYTRPDIAYAVGRLSRYTQSPNQDHWTIVRRVLKYLRGTINYGLCFCGFP 415

Query: 721 DVLEGYSDA 747
            VLEG+SDA
Sbjct: 416 SVLEGFSDA 424


>gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1012

 Score =  342 bits (877), Expect = e-107
 Identities = 158/249 (63%), Positives = 202/249 (81%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+LEEEIYM QPEG  V G+E KVC+L+KSLYGLKQAP QWHEKFD V++++G
Sbjct: 603  VKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDG 662

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F  +  DKCVY K ++D CVI+CLYVDD+LIFG+   ++  TK FL+++FDMKD+G   V
Sbjct: 663  FSSSSADKCVYTKSMNDDCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASV 722

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            ILG+K++R  +SI LSQ HY+E+LL KF+Y     V+TPYD + +L++NKG S++Q +Y+
Sbjct: 723  ILGVKVVRKGDSILLSQGHYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYA 782

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSLLHLMN +RPDIAYAV RL+RYTH PN  HW+AL RL +YL+GT+DY I ++GFP
Sbjct: 783  QIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFP 842

Query: 721  DVLEGYSDA 747
             VLEGYSDA
Sbjct: 843  AVLEGYSDA 851


>gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1330

 Score =  346 bits (888), Expect = e-107
 Identities = 166/250 (66%), Positives = 202/250 (80%), Gaps = 1/250 (0%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNGDL+EEIYM QPEGFV+ G E KVCKLVKSLYGLKQAP QWH+KFD V++SNG
Sbjct: 931  VKTAFLNGDLDEEIYMKQPEGFVMPGNEHKVCKLVKSLYGLKQAPKQWHQKFDEVVLSNG 990

Query: 181  FYINKGDKCVYIKVVDDTC-VILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVD 357
            F +N+ DKCVY K  D    VI+CLYVDD+LIFG++   ++ TKKFLS+ FDMKDLG  +
Sbjct: 991  FVLNQADKCVYSKFDDSRKGVIICLYVDDMLIFGTDQDQVDKTKKFLSSCFDMKDLGEAE 1050

Query: 358  VILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKY 537
            VILGI+I R  N IS+SQSHYIEK+L KFN+   +PVSTP DP+FKL  N+G +VSQ +Y
Sbjct: 1051 VILGIRIKRENNGISISQSHYIEKILKKFNFHDSSPVSTPMDPAFKLSPNEGVAVSQLEY 1110

Query: 538  SQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGF 717
            S+ IGSL++ M  TRPDIAYAVG+L+RYT +P  SHW A+ R+F+YLKGT+ Y + +TGF
Sbjct: 1111 SRAIGSLMYAMISTRPDIAYAVGKLSRYTSNPGASHWQAMNRVFRYLKGTMKYGLTYTGF 1170

Query: 718  PDVLEGYSDA 747
            P VLEGYSDA
Sbjct: 1171 PSVLEGYSDA 1180


>gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA91827.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 527

 Score =  328 bits (841), Expect = e-107
 Identities = 155/249 (62%), Positives = 196/249 (78%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKT FLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 198 VKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDITLTSAG 257

Query: 181 FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
           F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 258 FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 317

Query: 361 ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
           IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 318 ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 377

Query: 541 QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
           QIIGSL++L + TRPDI++AV +L+R+  +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 378 QIIGSLMYLASATRPDISFAVSKLSRFISNPGDDHWRALERVMRYLKGTVELGLHYTGYP 437

Query: 721 DVLEGYSDA 747
            VLEGYSD+
Sbjct: 438 AVLEGYSDS 446


>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 713

 Score =  333 bits (854), Expect = e-107
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 296  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 355

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 356  FVVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 415

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 416  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 475

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 476  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 535

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 536  AVLEGYSDS 544


>gb|KYP49204.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 313

 Score =  319 bits (818), Expect = e-106
 Identities = 160/227 (70%), Positives = 182/227 (80%), Gaps = 1/227 (0%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKT+FLNGDLEEEIYMNQPEGF+  G E KVCKLVKSLYGLKQAP QWH+KFD V+ S G
Sbjct: 89  VKTSFLNGDLEEEIYMNQPEGFIEPGMENKVCKLVKSLYGLKQAPKQWHDKFDQVVSSYG 148

Query: 181 FYINKGDKCVYIKVVDD-TCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVD 357
           F  N  DKCVY+K  DD +CVILCLYVDDILIFGSN+HVIND K FLS++F+MKDLG VD
Sbjct: 149 FQFNNSDKCVYVKQFDDNSCVILCLYVDDILIFGSNLHVINDVKSFLSSNFEMKDLGLVD 208

Query: 358 VILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKY 537
           VILGIK+I+N + I L+QSHYIEK+L KFNY  V PVSTP+DPS KL+KN G SVS  +Y
Sbjct: 209 VILGIKLIKNHDGIVLTQSHYIEKILKKFNYFDVKPVSTPFDPSIKLKKNIGESVSPLQY 268

Query: 538 SQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYL 678
           SQIIGSLLHL N +RPDIAY VGRL  YTH+      D L ++F  L
Sbjct: 269 SQIIGSLLHLSNFSRPDIAYTVGRLGIYTHNLA----DLLRKIFTLL 311


>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 764

 Score =  333 bits (853), Expect = e-106
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 327  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 386

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 387  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 446

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 447  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 506

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 507  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 566

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 567  AVLEGYSDS 575


>gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 622

 Score =  327 bits (839), Expect = e-105
 Identities = 156/249 (62%), Positives = 197/249 (79%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKTAFLN +L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP Q HEKFD  + S G
Sbjct: 198 VKTAFLNRELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQCHEKFDKTLTSAG 257

Query: 181 FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
           F +N+ DKCVY +   D  VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 258 FAVNEADKCVYYRHGGDEGVILCLYVDDILIFGTNLEVINEAKSFLSQNFDMKDLGVADV 317

Query: 361 ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
           IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 318 ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 377

Query: 541 QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
           QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 378 QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 437

Query: 721 DVLEGYSDA 747
            VLEGYSD+
Sbjct: 438 AVLEGYSDS 446


>emb|CAE04777.3| OSJNBb0115I21.5 [Oryza sativa Japonica Group]
          Length = 722

 Score =  329 bits (844), Expect = e-105
 Identities = 156/249 (62%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKF+  + S G
Sbjct: 408  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFNKTLTSAG 467

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 468  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLGVINEVKSFLSQNFDMKDLGVADV 527

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 528  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 587

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 588  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVIRYLKGTMELGLHYTGYP 647

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 648  AVLEGYSDS 656


>emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group]
          Length = 478

 Score =  322 bits (824), Expect = e-105
 Identities = 152/249 (61%), Positives = 194/249 (77%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKT FLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 90  VKTVFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 149

Query: 181 FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
           F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 150 FAVNEADKCVYYRHDGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 209

Query: 361 ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
           IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  L KNK  + +Q +YS
Sbjct: 210 ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLLKNKRIAKNQLEYS 269

Query: 541 QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
           QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLK T++  +++TG+P
Sbjct: 270 QIIGSLMYLASTTRPDISFAVSKLSRFTSNPRDDHWRALERVMRYLKRTMELGLHYTGYP 329

Query: 721 DVLEGYSDA 747
            +LE YSD+
Sbjct: 330 AILEEYSDS 338


>gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 923

 Score =  333 bits (853), Expect = e-104
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            +KTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 552  IKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 611

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 612  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 671

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 672  ILNIKLIRGENGITLLQSHYVEKMLNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 731

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGTI+  +++TG+P
Sbjct: 732  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTIELGLHYTGYP 791

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 792  AVLEGYSDS 800


>emb|CAH66262.1| OSIGBa0135A16.5 [Oryza sativa]
          Length = 503

 Score =  319 bits (818), Expect = e-104
 Identities = 152/249 (61%), Positives = 193/249 (77%)
 Frame = +1

Query: 1   VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
           VKT FLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S  
Sbjct: 231 VKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAD 290

Query: 181 FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
           F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 291 FAVNEADKCVYYRHGGGERVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 350

Query: 361 ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
           IL IK+IR +N I+L QSHY++K+LN+F Y    P   P DPS  LRKNK  + +Q +YS
Sbjct: 351 ILNIKLIRGENGITLLQSHYVQKILNRFGYIDSKPSPAPDDPSLLLRKNKRIARNQLEYS 410

Query: 541 QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
           QIIGSL++L + TRPDI++AV +L R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 411 QIIGSLMYLASATRPDISFAVSKLNRFTSNPGDDHWRALERVMRYLKGTMELGLHYTGYP 470

Query: 721 DVLEGYSDA 747
            VLEGYSD+
Sbjct: 471 VVLEGYSDS 479


>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1060

 Score =  333 bits (853), Expect = e-103
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 771  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 830

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 831  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 890

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 891  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 950

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 951  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 1010

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 1011 AVLEGYSDS 1019


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  333 bits (853), Expect = e-103
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 696  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 755

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 756  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 815

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 816  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 875

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 876  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 935

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 936  AVLEGYSDS 944


>emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa Japonica Group]
          Length = 1282

 Score =  335 bits (859), Expect = e-103
 Identities = 158/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 784  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSTG 843

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIND K FLS +FDMKDLG  DV
Sbjct: 844  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINDVKSFLSQNFDMKDLGVADV 903

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 904  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 963

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 964  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 1023

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 1024 AVLEGYSDS 1032


>gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 909

 Score =  328 bits (841), Expect = e-103
 Identities = 155/249 (62%), Positives = 197/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 582  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 641

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 642  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 701

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 702  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 761

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRP+I++AV +L+R+T +P   HW ALER+ +YLKGT++  +++ G+P
Sbjct: 762  QIIGSLMYLASATRPNISFAVSKLSRFTSNPGDDHWRALERIMRYLKGTMELGLHYIGYP 821

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 822  AVLEGYSDS 830


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  335 bits (858), Expect = e-103
 Identities = 158/249 (63%), Positives = 199/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  +IS G
Sbjct: 903  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAG 962

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 963  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSKNFDMKDLGVADV 1022

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 1023 ILNIKLIRGENEITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 1082

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 1083 QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 1142

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 1143 AVLEGYSDS 1151


>emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]
          Length = 1113

 Score =  332 bits (850), Expect = e-103
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 696  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 755

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 756  FAVNEVDKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 815

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 816  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 875

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 876  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 935

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 936  AVLEGYSDS 944


>gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1198

 Score =  333 bits (853), Expect = e-103
 Identities = 157/249 (63%), Positives = 198/249 (79%)
 Frame = +1

Query: 1    VKTAFLNGDLEEEIYMNQPEGFVVAGEEKKVCKLVKSLYGLKQAPMQWHEKFDSVIISNG 180
            VKTAFLNG+L+EEIYM+QP+GFVV G+E KVCKL+KSLYGLKQAP QWHEKFD  + S G
Sbjct: 793  VKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAG 852

Query: 181  FYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVINDTKKFLSNHFDMKDLGPVDV 360
            F +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN+ K FLS +FDMKDLG  DV
Sbjct: 853  FAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADV 912

Query: 361  ILGIKIIRNKNSISLSQSHYIEKLLNKFNYSSVNPVSTPYDPSFKLRKNKGASVSQHKYS 540
            IL IK+IR +N I+L QSHY+EK+LN+F Y    P  TPYDPS  LRKNK  + +Q +YS
Sbjct: 913  ILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYS 972

Query: 541  QIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALERLFKYLKGTIDYAINFTGFP 720
            QIIGSL++L + TRPDI++AV +L+R+T +P   HW ALER+ +YLKGT++  +++TG+P
Sbjct: 973  QIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP 1032

Query: 721  DVLEGYSDA 747
             VLEGYSD+
Sbjct: 1033 AVLEGYSDS 1041