BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00028689
         (624 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]    161   2e-42
gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]    161   2e-42
gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]            162   2e-42
dbj|BAS06276.1| polymerase polyprotein [Dahlia common mosaic virus]   160   2e-42
gb|ABW80581.1| polyprotein [Dahlia mosaic virus]                      160   7e-42
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] >...   159   9e-42
gb|AEA39176.1| polyprotein [Dahlia mosaic virus]                      159   1e-41
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]                  157   6e-41
ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic prote...   155   2e-40
gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]                      156   2e-40
gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]            154   1e-39
gb|AMN10080.1| reverse transcriptase [Angelica bushy stunt virus]     152   3e-39
ref|NP_619548.1| unnamed protein product [Figwort mosaic virus] ...   150   1e-38
emb|CAH68829.1| polyprotein [Carnation etched ring virus]             148   9e-38
ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia fl...   148   1e-37
dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus]      147   2e-37
dbj|BAO53463.1| reverse transcriptase [Cauliflower mosaic virus]      146   3e-37
gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]              146   3e-37
gb|AQS27979.1| putative reverse transcriptase [Strawberry vein b...   146   5e-37
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu...   146   5e-37

>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
          Length = 673

 Score =  161 bits (407), Expect = 2e-42
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E +  FPD L+DKKQLQ FLGV+ +A  +I  LA  RK     LKKD V+ W   
Sbjct: 455  QNHILEHLHNFPDRLEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQS 514

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSGL 375
              + +K++K+     PKL +P+ ED L++ TDASD +W  VL  + T   E+ CRY SG 
Sbjct: 515  DTDYVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGNELICRYSSGT 574

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDN-SSVKAFLKNKIESKPEKA 552
            F P+E   +H NEKE  AV++   K+ ++L    FT++ DN + +K F+  KI    ++ 
Sbjct: 575  FKPAE-LNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSKQG 633

Query: 553  RLLRWQAECQYYDYDIVIIKSHEN 624
            RL+RWQ    +Y +++  +K  +N
Sbjct: 634  RLIRWQMWLSHYTFNVNHLKGEKN 657


>gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]
          Length = 673

 Score =  161 bits (407), Expect = 2e-42
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E +  FPD L+DKKQLQ FLGV+ +A  +I  LA  RK     LKKD V+ W   
Sbjct: 455  QNHILEHLHNFPDRLEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQS 514

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSGL 375
              + +K++K+     PKL +P+ ED L++ TDASD +W  VL  + T   E+ CRY SG 
Sbjct: 515  DTDYVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGNELICRYSSGT 574

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDN-SSVKAFLKNKIESKPEKA 552
            F P+E   +H NEKE  AV++   K+ ++L    FT++ DN + +K F+  KI    ++ 
Sbjct: 575  FKPAE-LNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSKQG 633

Query: 553  RLLRWQAECQYYDYDIVIIKSHEN 624
            RL+RWQ    +Y +++  +K  +N
Sbjct: 634  RLIRWQMWLSHYTFNVNHLKGEKN 657


>gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]
          Length = 814

 Score =  162 bits (409), Expect = 2e-42
 Identities = 83/202 (41%), Positives = 121/202 (59%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLGV+ +A  +I  LA  RK     LKKD V++W+  
Sbjct: 602  QKHILENLHKFPDTLEDKKHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQS 661

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                IK++K+     PKL +P++E+ L++ TDAS+D+W  VL   T ++E  CRY SG F
Sbjct: 662  DTNYIKKIKKNLTSFPKLYLPKEEEFLIIETDASNDFWGGVLKAKTADKEEVCRYTSGSF 721

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV+    K+ ++L   KF ++ DN +   FLK KI    ++ RL
Sbjct: 722  KTAE-KNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRL 780

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 781  VRWQMWFSRYSFDIEHLEGSKN 802


>dbj|BAS06276.1| polymerase polyprotein [Dahlia common mosaic virus]
          Length = 672

 Score =  160 bits (406), Expect = 2e-42
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E +  FPD L+DKKQLQ FLGV+ +A  +I  LA  RK     LKKD V+ W   
Sbjct: 454  QNHILEHLHNFPDRLEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQS 513

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSGL 375
              + +K++K+     PKL +P+ ED L++ TDASD +W  VL  + T   E+ CRY SG 
Sbjct: 514  DTDYVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGNELICRYSSGT 573

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDN-SSVKAFLKNKIESKPEKA 552
            F P+E   +H NEKE  AV++   K+ ++L    FT++ DN + +K F+  KI    ++ 
Sbjct: 574  FKPAE-LNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSKQG 632

Query: 553  RLLRWQAECQYYDYDIVIIKSHEN 624
            RL+RWQ    +Y +++  +K  +N
Sbjct: 633  RLVRWQMWLSHYTFNVNHLKGEKN 656


>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
          Length = 812

 Score =  160 bits (405), Expect = 7e-42
 Identities = 82/202 (40%), Positives = 121/202 (59%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLGV+ +A  +I  LA  RK     LKKD V++W+  
Sbjct: 600  QKHILENLHKFPDTLEDKKHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQS 659

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                IK++K+     PKL +P++++ L++ TDAS+D+W  VL   T ++E  CRY SG F
Sbjct: 660  DTNYIKKIKKNLTSFPKLYLPKEKEFLIIETDASNDFWGGVLKAKTADKEEVCRYTSGSF 719

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV+    K+ ++L   KF ++ DN +   FLK KI    ++ RL
Sbjct: 720  KTAE-RNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRL 778

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 779  VRWQMWFSRYSFDIEHLEGSKN 800


>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
 gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
          Length = 674

 Score =  159 bits (402), Expect = 9e-42
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI++ I  FPD ++DKKQLQ FLGV+ +A  +I  LA  RK     LKKD V+ W   
Sbjct: 453  QNHILDHIHTFPDRIEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWTQS 512

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSGL 375
              + +K++K+     PKL +P+ ED L++ TDASD +W  VL  + T  EE+ CRY SG 
Sbjct: 513  DTDYVKKIKKGLINFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGEELICRYSSGT 572

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDN-SSVKAFLKNKIESKPEKA 552
            F P+E   +H NEKE  AV++   K+ ++L    FT++ DN + +K F+  KI    ++ 
Sbjct: 573  FKPAE-LNYHSNEKELLAVKQVITKFSIYLTPVCFTVRTDNVNLLKGFMNKKITGDSKQG 631

Query: 553  RLLRWQAECQYYDYDIVIIKSHEN 624
            RL+RWQ    +Y + +  +K  +N
Sbjct: 632  RLIRWQMWFSHYTFKVDHLKGEQN 655


>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
          Length = 808

 Score =  159 bits (403), Expect = 1e-41
 Identities = 82/202 (40%), Positives = 121/202 (59%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLGV+ +A  +I  LA  RK     LKKD V++W+  
Sbjct: 596  QKHILENLHKFPDTLEDKKHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQS 655

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                IK++K+     PKL +P++++ L++ TDAS+D+W  VL   T ++E  CRY SG F
Sbjct: 656  DTNYIKKIKKNLISFPKLYLPKEKEFLIIETDASNDFWGGVLKAKTADKEEVCRYTSGSF 715

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV+    K+ ++L   KF ++ DN +   FLK KI    ++ RL
Sbjct: 716  KTAE-KNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNKNFTYFLKTKISGDNKQGRL 774

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 775  VRWQMWFSRYSFDIEHLEGPKN 796


>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
          Length = 810

 Score =  157 bits (398), Expect = 6e-41
 Identities = 80/202 (39%), Positives = 121/202 (59%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLG++ +A  +I  LA  R+     LKKD V++W+  
Sbjct: 598  QKHILENLHKFPDTLEDKKHLQRFLGILTYAESYIPKLAELRRPLQVKLKKDYVWEWKQS 657

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                IK++K+     PKL +P++++ L++ TDAS+D+W  VL   T  +E  CRY SG F
Sbjct: 658  DTSYIKKIKKNLTSFPKLYLPKEKEFLIIETDASNDYWGGVLKAKTAEKEEVCRYTSGSF 717

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV+ A  K+ ++L   KF ++ D+ +   FLK KI    ++ RL
Sbjct: 718  KTAE-KNYHSNEKELLAVKNAISKFSIYLTPVKFLVRTDSKNFTYFLKTKISGDNKQGRL 776

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 777  VRWQMWFSRYTFDIEHLEGLKN 798


>ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
            Reverse transcriptase] [Carnation etched ring virus]
 sp|P05400.1|POL_CERV RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
 emb|CAA28360.1| unnamed protein product [Carnation etched ring virus]
 prf||1301227E ORF 5
          Length = 659

 Score =  155 bits (392), Expect = 2e-40
 Identities = 76/202 (37%), Positives = 119/202 (58%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E I  FPD ++DKKQLQ FLG++ +A  +I  LA  RK     LK+D+ + W D 
Sbjct: 444  QNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDT 503

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
              + + ++K+  K  PKL  P+  D+LV+ TDAS+++W  +L  +  + E  CRY SG F
Sbjct: 504  DSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSF 563

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV +  KK+ ++L   +F ++ DN +   F+   ++   ++ RL
Sbjct: 564  KAAE-RNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRL 622

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     YD+D+  I   +N
Sbjct: 623  VRWQMWLSQYDFDVEHIAGTKN 644


>gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]
          Length = 806

 Score =  156 bits (394), Expect = 2e-40
 Identities = 79/202 (39%), Positives = 120/202 (59%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLGV+ +A  +I  LA  R+     LKKD V++W+  
Sbjct: 594  QKHILENLHKFPDTLEDKKHLQRFLGVLTYAESYIPKLAELRRPLQVKLKKDYVWEWKQS 653

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                IK++K+     PKL +P++++  ++ TDAS+D+W  VL   T ++E  CRY SG F
Sbjct: 654  DTNYIKKIKKNLTSFPKLYLPKEKEFPIIETDASNDFWGGVLKAKTADKEAVCRYTSGSF 713

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEK+  AV+    K+ ++L   KF ++ DN +   FLK KI    ++ RL
Sbjct: 714  KTAE-KNYHSNEKKLLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRL 772

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 773  IRWQMWFSRYSFDIEHLEGSKN 794


>gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]
          Length = 825

 Score =  154 bits (388), Expect = 1e-39
 Identities = 79/202 (39%), Positives = 117/202 (57%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E +  FPDTL+DKK LQ FLGV+ +A  +I  LA  R+     LKKD V++W+  
Sbjct: 609  QKHILENLHKFPDTLEDKKHLQRFLGVLTYAESYIPKLAELRRPLQVKLKKDFVWEWKQS 668

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
                +K++K+     PKL +P  ED L++ T AS+++W  VL   T   E  C+Y SG F
Sbjct: 669  DTNYVKKIKKNLTSFPKLYLPNKEDFLIIETGASNEFWGGVLKVKTAETEEICKYTSGSF 728

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV+    K+ ++L+  KF ++ DN +   FLK KI    ++ RL
Sbjct: 729  KTAE-KNYHSNEKELLAVKNTISKFSIYLIPVKFLVRTDNRNFTYFLKTKISGDNKQGRL 787

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     Y +DI  ++  +N
Sbjct: 788  VRWQMWFSRYSFDIEHLEGPKN 809


>gb|AMN10080.1| reverse transcriptase [Angelica bushy stunt virus]
          Length = 703

 Score =  152 bits (384), Expect = 3e-39
 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 1/203 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E I  FPD ++DKKQLQ FLG++ +A  +I  LA  R      LKKD  + W   
Sbjct: 488  QNHILEHIAKFPDKIEDKKQLQRFLGILTYASDYIPGLASKRAPLQVKLKKDISWNWTAS 547

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPN-EEVPCRYCSGL 375
                + +LK+     PKL  P  +D+L++ TDAS D+W  +L     N EE+ CRY SG 
Sbjct: 548  DTSYVAKLKKGLNNFPKLYHPLPDDKLIIETDASQDYWGGILKAANTNGEELICRYASGS 607

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKAR 555
            F  +E TR+H NEKE+ AV +  KK+ ++L    FT++ DN +   F+  +I+   ++ R
Sbjct: 608  FKSAE-TRYHSNEKEYLAVIRVIKKFSIYLTPVHFTVRTDNKNFTHFMNLQIQGDNKQGR 666

Query: 556  LLRWQAECQYYDYDIVIIKSHEN 624
            L+RWQ    +Y + +  I+  +N
Sbjct: 667  LVRWQQWLSHYSFTVEHIEGSKN 689


>ref|NP_619548.1| unnamed protein product [Figwort mosaic virus]
 sp|P09523.1|POL_FMVD RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
 emb|CAA29527.1| unnamed protein product [Figwort mosaic virus]
          Length = 666

 Score =  150 bits (379), Expect = 1e-38
 Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 1/203 (0%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E I  FPD L+DKK LQ FLGV+ +A  +I  LA  RK     LKKD  + W   
Sbjct: 453  QNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQS 512

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSGL 375
              + +K++K+     PKL +P+ ED L++ TDASD +W  VL  +     E+ CRY SG 
Sbjct: 513  DSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGS 572

Query: 376  FTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKAR 555
            F  +E   +H N+KE  AV++   K+  +L   +FT++ DN +   FL+  ++   ++ R
Sbjct: 573  FKQAE-KNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGR 631

Query: 556  LLRWQAECQYYDYDIVIIKSHEN 624
            L+RWQ     Y +D+  ++  +N
Sbjct: 632  LVRWQNWFSKYQFDVEHLEGVKN 654


>emb|CAH68829.1| polyprotein [Carnation etched ring virus]
          Length = 656

 Score =  148 bits (373), Expect = 9e-38
 Identities = 74/202 (36%), Positives = 117/202 (57%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            QNHI+E I  FPD ++DKKQLQ  LG++ +A  +I  LA  RK     LK+D+ + W D 
Sbjct: 441  QNHILEHIHKFPDRIEDKKQLQRSLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDT 500

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNEEVPCRYCSGLF 378
              + + ++K+  K  PKL  P+  D+LV+ TDAS+++W  +L  +  + E  CRY SG F
Sbjct: 501  DSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSF 560

Query: 379  TPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKARL 558
              +E   +H NEKE  AV +   K+ ++L   +F ++ DN +   F+   ++   ++ RL
Sbjct: 561  KAAE-RNYHSNEKELLAVFRVIYKFSIYLTPCRFLIRSDNKNFTHFVNINLKGDRKQGRL 619

Query: 559  LRWQAECQYYDYDIVIIKSHEN 624
            +RWQ     YD+D+  I   +N
Sbjct: 620  VRWQMWLSQYDFDVEHIAGTKN 641


>ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia flower distortion virus]
 gb|ACL36982.1| putative enzymatic polyprotein [Rudbeckia flower distortion virus]
          Length = 701

 Score =  148 bits (373), Expect = 1e-37
 Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 1/198 (0%)
 Frame = +1

Query: 10   IILQNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKW 189
            I LQ+HI+E I+ FP  + DKK LQ FLG++ +A  +I  LA +RK     LKKD V++W
Sbjct: 482  IELQSHILENIKLFPSRIPDKKSLQRFLGILTYADQYIRKLAEWRKPLQRKLKKDTVWEW 541

Query: 190  EDEHQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYC 366
             D   + +++ K   K+ PKL  P  ++ L++ TDAS + WA VL ++ T N E  CRY 
Sbjct: 542  NDSDTQYVEKFKRNLKEFPKLHHPLPDEYLIIETDASHEHWAGVLKSRGTDNLERLCRYT 601

Query: 367  SGLFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPE 546
            SG F P+E   +H NEKE  AV++   K+  +L + +F ++ DN     FL+  I+   +
Sbjct: 602  SGSFKPAE-INYHSNEKEVLAVKRTITKFKGYLASSEFLVRTDNKYFTYFLRTSIKDDYK 660

Query: 547  KARLLRWQAECQYYDYDI 600
            + RL+RWQ    +Y +++
Sbjct: 661  QGRLIRWQQWFSHYKFNV 678


>dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  147 bits (371), Expect = 2e-37
 Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 4/206 (1%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E I  FPDTL+DKKQLQ FLG++ +A  +I+ LA  RK     LK++  +KW  E
Sbjct: 455  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYISKLAQIRKPLQAKLKENVPWKWTKE 514

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNE----EVPCRYC 366
                ++++K+  +  P L  P  E++L++ TDASDD+W  +L  +  NE    E+ CRY 
Sbjct: 515  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574

Query: 367  SGLFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPE 546
            SG F  +E   +H N+KE  AV    KK+ ++L    F ++ DN+  K+F+    +   +
Sbjct: 575  SGSFKAAE-KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633

Query: 547  KARLLRWQAECQYYDYDIVIIKSHEN 624
              R +RWQA   +Y +D+  IK  +N
Sbjct: 634  LGRNIRWQAWLSHYSFDVEHIKGTDN 659


>dbj|BAO53463.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  146 bits (369), Expect = 3e-37
 Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 4/206 (1%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E I  FPDTL+DKKQLQ FLG++ +A  +I  LA  RK     LK++  +KW  E
Sbjct: 455  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 514

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNE----EVPCRYC 366
                ++++K+  +  P L  P  E++L++ TDASDD+W  +L  +  NE    E+ CRY 
Sbjct: 515  DSLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574

Query: 367  SGLFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPE 546
            SG F  +E   +H N+KE  AV    KK+ ++L    F ++ DN+  K+F+    +   +
Sbjct: 575  SGSFKAAE-KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633

Query: 547  KARLLRWQAECQYYDYDIVIIKSHEN 624
              R +RWQA   +Y +D+  IK  +N
Sbjct: 634  LGRNIRWQAWLSHYSFDVEHIKGTDN 659


>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
          Length = 675

 Score =  146 bits (369), Expect = 3e-37
 Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 4/206 (1%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E I  FPDTL+DKKQLQ FLG++ +A  +I  LA  RK     LK++  +KW  E
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNE----EVPCRYC 366
                ++++K+  +  P L  P  E++L++ TDASDD+W  +L  +  NE    E+ CRY 
Sbjct: 516  DTLYMQKVKKNLQAFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 367  SGLFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPE 546
            SG F  +E   +H N+KE  AV    KK+ ++L    F ++ DN+  K+F+    +   +
Sbjct: 576  SGSFKAAE-KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 634

Query: 547  KARLLRWQAECQYYDYDIVIIKSHEN 624
              R +RWQA   +Y +D+  IK  +N
Sbjct: 635  LGRNIRWQAWLSHYSFDVEHIKGTDN 660


>gb|AQS27979.1| putative reverse transcriptase [Strawberry vein banding virus]
          Length = 745

 Score =  146 bits (369), Expect = 5e-37
 Identities = 73/204 (35%), Positives = 118/204 (57%), Gaps = 1/204 (0%)
 Frame = +1

Query: 16   LQNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWED 195
            +Q+HI   +  FPD L D+  LQ FLG++N+   +   +A  R      LKK+ ++ W +
Sbjct: 529  IQSHIGLHLTAFPDQLADRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEIIWSWTE 588

Query: 196  EHQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVL-TKVTPNEEVPCRYCSG 372
            +  E ++++K + K LP L  P  ED+ ++  DASDD W AVL  K+   +EV CRY SG
Sbjct: 589  KDTETVRKIKSLVKSLPDLYNPSPEDKPIIECDASDDHWGAVLKVKLPEGKEVICRYASG 648

Query: 373  LFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPEKA 552
             F P+E   +H NEKE  ++ KA K +  ++L  KF ++ DN++   F++  I    +++
Sbjct: 649  TFKPAE-KNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQS 707

Query: 553  RLLRWQAECQYYDYDIVIIKSHEN 624
            RL+RWQ   + Y +DI  +   +N
Sbjct: 708  RLVRWQMALREYSFDIEHVSGQKN 731


>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
          Length = 674

 Score =  146 bits (368), Expect = 5e-37
 Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 4/206 (1%)
 Frame = +1

Query: 19   QNHIVEKIQGFPDTLKDKKQLQSFLGVVNFAGMFINNLAYYRKVFSPLLKKDAVFKWEDE 198
            Q HI+E I  FPDTL+DKKQLQ FLG++ +A  +I  LA  RK     LK++  +KW  E
Sbjct: 455  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 514

Query: 199  HQEGIKQLKEVCKKLPKLAIPQDEDELVLYTDASDDWWAAVLTKVTPNE----EVPCRYC 366
                ++++K+  +  P L  P  E++L++ TDASDD+W  +L  +  NE    E+ CRY 
Sbjct: 515  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574

Query: 367  SGLFTPSEATRWHINEKEFFAVRKAFKKWPLFLLAKKFTLKIDNSSVKAFLKNKIESKPE 546
            SG F  +E   +H N+KE  AV    KK+ ++L    F ++ DN+  K+F+    +   +
Sbjct: 575  SGSFKAAE-KNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633

Query: 547  KARLLRWQAECQYYDYDIVIIKSHEN 624
              R +RWQA   +Y +D+  IK  +N
Sbjct: 634  LGRNIRWQAWLSHYSFDVEHIKGTDN 659