BLASTX nr result

ID: Rehmannia29_contig00027656 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00027656
         (432 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KZV25510.1| replication protein A 70 kDa DNA-binding subunit ...    42   3e-06
gb|KZV17224.1| Replication protein A 70 kDa DNA-binding subunit ...    39   7e-06

>gb|KZV25510.1| replication protein A 70 kDa DNA-binding subunit B-like [Dorcoceras
           hygrometricum]
          Length = 161

 Score = 41.6 bits (96), Expect(2) = 3e-06
 Identities = 16/35 (45%), Positives = 29/35 (82%)
 Frame = -2

Query: 197 LTDVIGRMTAKNSPQHKQIAGRQTKMIDIVLENIQ 93
           L DVIG++ A++SPQ ++  GR+T+++DIVL++ +
Sbjct: 122 LFDVIGQVVARDSPQSREFGGRETRLLDIVLQDYE 156



 Score = 37.0 bits (84), Expect(2) = 3e-06
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = -1

Query: 396 IIFVGKTLLTEFFDDDFPCMIYDFKPFDSFTDVDFIDESIL 274
           I F+ KT + E FDD FP +++DFK F+   + + I+E++L
Sbjct: 83  INFITKTHVCEIFDDSFPSIMFDFKSFNDVKNAE-IEETML 122


>gb|KZV17224.1| Replication protein A 70 kDa DNA-binding subunit [Dorcoceras
           hygrometricum]
          Length = 388

 Score = 39.3 bits (90), Expect(2) = 7e-06
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = -2

Query: 197 LTDVIGRMTAKNSPQHKQIAGRQTKMIDIVLENIQ*N 87
           L DVIG++ A++SPQ K+  GR+T+++ IVL + + N
Sbjct: 202 LFDVIGQVVARDSPQSKEFGGRETRLLYIVLHDYEDN 238



 Score = 38.1 bits (87), Expect(2) = 7e-06
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = -1

Query: 396 IIFVGKTLLTEFFDDDFPCMIYDFKPFDSFTDVDFIDESIL 274
           I F+ KT + E FDD FP M++DFK F +  + + I+E++L
Sbjct: 163 INFITKTHVCEIFDDSFPSMMFDFKSFTNVKNAE-IEETML 202


Top