BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00027518
         (528 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009344495.1| ycf1 protein (chloroplast) [Rehmannia chingi...   359   e-112
ref|YP_009354264.1| ycf1 protein (chloroplast) [Rehmannia piasez...   358   e-111
ref|YP_009354089.1| ycf1 protein (chloroplast) [Rehmannia henryi...   357   e-111
ref|YP_009354002.1| ycf1 protein (chloroplast) [Rehmannia glutin...   356   e-110
gb|AFI72609.1| Ycf1, partial (plastid) [Callicarpa pedunculata]       310   1e-94
gb|AFI72608.1| Ycf1, partial (plastid) [Callicarpa japonica]          310   1e-94
gb|AFI72647.1| Ycf1, partial (plastid) [Pseudocarpidium wrightii]     309   2e-94
gb|AFI72624.1| Ycf1, partial (plastid) [Gmelina arborea]              302   5e-92
ref|YP_009309597.1| Ycf1 (chloroplast) [Paulownia tomentosa] >gi...   300   3e-91
ref|YP_009309510.1| Ycf1 (chloroplast) [Paulownia coreana] >gi|8...   300   3e-91
ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]...   299   7e-91
ref|YP_008815995.1| Ycf1 (chloroplast) [Lindenbergia philippensi...   296   9e-90
ref|YP_009117280.1| hypothetical chloroplast RF19 (chloroplast) ...   295   2e-89
gb|AFI72645.1| Ycf1, partial (plastid) [Phryma leptostachya]          293   8e-89
ref|YP_009108418.1| hypothetical chloroplast RF19 (chloroplast) ...   290   1e-87
gb|ADX62247.1| Ycf1, partial (chloroplast) [Ocimum basilicum]         288   4e-87
gb|AFI72646.1| Ycf1, partial (plastid) [Prostanthera incisa]          288   4e-87
gb|ARV78722.1| Ycf1, partial (chloroplast) [Perillula reptans]        286   4e-87
gb|ARV78721.1| Ycf1, partial (chloroplast) [Perillula reptans]        286   4e-87
ref|YP_009388828.1| hypothetical chloroplast RF19 (chloroplast) ...   288   4e-87

>ref|YP_009344495.1| ycf1 protein (chloroplast) [Rehmannia chingii]
 ref|YP_009354351.1| ycf1 protein (chloroplast) [Rehmannia elata]
 gb|APT42234.1| ycf1 protein (chloroplast) [Rehmannia chingii]
 gb|AQZ40824.1| ycf1 protein (chloroplast) [Rehmannia elata]
          Length = 1871

 Score =  359 bits (921), Expect = e-112
 Identities = 175/175 (100%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM
Sbjct: 372 VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL
Sbjct: 432 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
           YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI
Sbjct: 492 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 546


>ref|YP_009354264.1| ycf1 protein (chloroplast) [Rehmannia piasezkii]
 gb|AQZ40737.1| ycf1 protein (chloroplast) [Rehmannia piasezkii]
          Length = 1871

 Score =  358 bits (918), Expect = e-111
 Identities = 174/175 (99%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM
Sbjct: 372 VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL
Sbjct: 432 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
           YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFI+KFGINRIHGI
Sbjct: 492 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIDKFGINRIHGI 546


>ref|YP_009354089.1| ycf1 protein (chloroplast) [Rehmannia henryi]
 ref|YP_009354177.1| ycf1 protein (chloroplast) [Rehmannia solanifolia]
 gb|AQZ40562.1| ycf1 protein (chloroplast) [Rehmannia henryi]
 gb|AQZ40649.1| ycf1 protein (chloroplast) [Rehmannia solanifolia]
          Length = 1871

 Score =  357 bits (917), Expect = e-111
 Identities = 174/175 (99%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM
Sbjct: 372 VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRISLPTLEKFASN+LYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL
Sbjct: 432 IKRRISLPTLEKFASNKLYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
           YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI
Sbjct: 492 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 546


>ref|YP_009354002.1| ycf1 protein (chloroplast) [Rehmannia glutinosa]
 gb|AQZ40474.1| ycf1 protein (chloroplast) [Rehmannia glutinosa]
          Length = 1867

 Score =  356 bits (913), Expect = e-110
 Identities = 174/175 (99%), Positives = 174/175 (99%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRWNRPFRYIKNT IDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM
Sbjct: 372 VNLLFDSKRWNRPFRYIKNTRIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL
Sbjct: 432 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
           YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI
Sbjct: 492 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 546


>gb|AFI72609.1| Ycf1, partial (plastid) [Callicarpa pedunculata]
          Length = 1523

 Score =  310 bits (793), Expect = 1e-94
 Identities = 152/175 (86%), Positives = 159/175 (90%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D AV+NEMSQYFF+ICQSDGKERIS TYPPSLSIF EM
Sbjct: 40  VTLLFDSKRWNRPFRYIKNNQFDRAVRNEMSQYFFDICQSDGKERISLTYPPSLSIFLEM 99

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P LEKF+SNELYNPWV+TNKQKGKSFNNEFLNRI+ALDKE ISLNILETRTRL
Sbjct: 100 IKRRISPPPLEKFSSNELYNPWVYTNKQKGKSFNNEFLNRIKALDKEDISLNILETRTRL 159

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  K+YLSKRYDPFLN SYRK IYKNLSPS LKKTLIENFI+KFGINRIHGI
Sbjct: 160 CNDDSTKEYLSKRYDPFLNGSYRKTIYKNLSPSTLKKTLIENFIDKFGINRIHGI 214


>gb|AFI72608.1| Ycf1, partial (plastid) [Callicarpa japonica]
          Length = 1523

 Score =  310 bits (793), Expect = 1e-94
 Identities = 152/175 (86%), Positives = 159/175 (90%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D AV+NEMSQYFF+ICQSDGKERIS TYPPSLSIF EM
Sbjct: 40  VTLLFDSKRWNRPFRYIKNNQFDRAVRNEMSQYFFDICQSDGKERISLTYPPSLSIFLEM 99

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P LEKF+SNELYNPWV+TNKQKGKSFNNEFLNRI+ALDKE ISLNILETRTRL
Sbjct: 100 IKRRISPPPLEKFSSNELYNPWVYTNKQKGKSFNNEFLNRIKALDKEDISLNILETRTRL 159

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  K+YLSKRYDPFLN SYRK IYKNLSPS LKKTLIENFI+KFGINRIHGI
Sbjct: 160 CNDDSTKEYLSKRYDPFLNGSYRKTIYKNLSPSTLKKTLIENFIDKFGINRIHGI 214


>gb|AFI72647.1| Ycf1, partial (plastid) [Pseudocarpidium wrightii]
          Length = 1544

 Score =  309 bits (791), Expect = 2e-94
 Identities = 150/175 (85%), Positives = 159/175 (90%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN H D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EM
Sbjct: 40  VTLLFDSKRWNRPFRYIKNNHFDRAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEM 99

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS PT+EKF+SNELYNPWV+TNKQKGKS NNEF NRI+ALDKE ISLNILET+TRL
Sbjct: 100 IKRRISSPTIEKFSSNELYNPWVYTNKQKGKSLNNEFFNRIKALDKEDISLNILETKTRL 159

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            N+D  K+YLSKRYDPFLN SYRK IYK LSPS LKKTLIENFIEKFGINRIHGI
Sbjct: 160 CNNDSTKEYLSKRYDPFLNGSYRKTIYKTLSPSTLKKTLIENFIEKFGINRIHGI 214


>gb|AFI72624.1| Ycf1, partial (plastid) [Gmelina arborea]
          Length = 1526

 Score =  302 bits (774), Expect = 5e-92
 Identities = 149/175 (85%), Positives = 156/175 (89%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRP RYIKN   D AV+NEMSQYFF+ICQSD KERISFTYPPSLSIFFEM
Sbjct: 40  VTLLFDSKRWNRPLRYIKNNQFDKAVRNEMSQYFFDICQSDEKERISFTYPPSLSIFFEM 99

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRI  PTLEK A NELYNPWV+TNKQKGKSFNNEF+NRI+ALDKE ISLNIL+TRTRL
Sbjct: 100 IKRRIPTPTLEKCAFNELYNPWVYTNKQKGKSFNNEFINRIKALDKEDISLNILKTRTRL 159

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  K+YLSKRYDPFLN SYRK IYKNLSPS LKK LIENFIEKFGINRIHGI
Sbjct: 160 CNDDSQKEYLSKRYDPFLNGSYRKTIYKNLSPSTLKKILIENFIEKFGINRIHGI 214


>ref|YP_009309597.1| Ycf1 (chloroplast) [Paulownia tomentosa]
 gb|AKM21657.1| Ycf1 (chloroplast) [Paulownia tomentosa]
          Length = 1860

 Score =  300 bits (769), Expect = 3e-91
 Identities = 151/175 (86%), Positives = 156/175 (89%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKNT   GAV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EM
Sbjct: 372 VTLLFDSKRWNRPFRYIKNTQSAGAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P LEK  SNELYNPW +TNKQKGKSFNNEFLNRIEAL K SISLNILETRTRL
Sbjct: 432 IKRRISPPPLEKSLSNELYNPWGYTNKQKGKSFNNEFLNRIEALGKGSISLNILETRTRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
             DD  K+YLSKRYDPFLN SYRK IYKNLSPSILKKTLIENFI KFGINRI+GI
Sbjct: 492 CTDDSTKEYLSKRYDPFLNGSYRKTIYKNLSPSILKKTLIENFIAKFGINRIYGI 546


>ref|YP_009309510.1| Ycf1 (chloroplast) [Paulownia coreana]
 gb|AKM21570.1| Ycf1 (chloroplast) [Paulownia coreana]
          Length = 1811

 Score =  300 bits (769), Expect = 3e-91
 Identities = 151/175 (86%), Positives = 156/175 (89%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKNT   GAV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EM
Sbjct: 323 VTLLFDSKRWNRPFRYIKNTQSAGAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEM 382

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P LEK  SNELYNPW +TNKQKGKSFNNEFLNRIEAL K SISLNILETRTRL
Sbjct: 383 IKRRISPPPLEKSLSNELYNPWGYTNKQKGKSFNNEFLNRIEALGKGSISLNILETRTRL 442

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
             DD  K+YLSKRYDPFLN SYRK IYKNLSPSILKKTLIENFI KFGINRI+GI
Sbjct: 443 CTDDSTKEYLSKRYDPFLNGSYRKTIYKNLSPSILKKTLIENFIAKFGINRIYGI 497


>ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]
 emb|CCP47191.1| YCF1 protein (chloroplast) [Tectona grandis]
 emb|CCP47280.1| YCF1 protein (chloroplast) [Tectona grandis]
 emb|CCP47369.1| YCF1 protein (chloroplast) [Tectona grandis]
          Length = 1898

 Score =  299 bits (766), Expect = 7e-91
 Identities = 151/177 (85%), Positives = 157/177 (88%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRP RYIKN   D AV+NEMSQYFF+ICQSDGKERISFTYPPSLSIF EM
Sbjct: 409 VTLLFDSKRWNRPLRYIKNNQFDRAVRNEMSQYFFDICQSDGKERISFTYPPSLSIFLEM 468

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS  TL+KF SNELYNPWV+TNKQKGKSFNNEFLNRI+ALDKE ISLNILETRTRL
Sbjct: 469 IKRRISPLTLKKFLSNELYNPWVYTNKQKGKSFNNEFLNRIKALDKEDISLNILETRTRL 528

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFI--EKFGINRIHGI 526
            NDD  KKYLSKRYDPFLN SYRK IYKNLSPS LKKTLIEN I  +KFGINRIHGI
Sbjct: 529 CNDDSTKKYLSKRYDPFLNGSYRKTIYKNLSPSTLKKTLIENSIDMDKFGINRIHGI 585


>ref|YP_008815995.1| Ycf1 (chloroplast) [Lindenbergia philippensis]
 emb|CDI43976.1| Ycf1 (chloroplast) [Lindenbergia philippensis]
          Length = 1871

 Score =  296 bits (758), Expect = 9e-90
 Identities = 145/175 (82%), Positives = 155/175 (88%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRWNRP RYIKNTH DG V+NEMSQYFF+IC+SDGKERISFTY PSLSIFFEM
Sbjct: 372 VNLLFDSKRWNRPLRYIKNTHFDGTVRNEMSQYFFDICKSDGKERISFTYLPSLSIFFEM 431

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS  TLEK + N+L N WV+TN QKGKSFNNEF+NRIEALDKE  SLN+LETR RL
Sbjct: 432 IKRRISPTTLEKSSPNKLSNLWVYTNTQKGKSFNNEFINRIEALDKEFSSLNMLETRIRL 491

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDDY K+YLSKRYDPFLNRSYRK IYKN SP ILKKTL+ENFIE FGINRIHGI
Sbjct: 492 CNDDYTKEYLSKRYDPFLNRSYRKTIYKNFSPPILKKTLVENFIENFGINRIHGI 546


>ref|YP_009117280.1| hypothetical chloroplast RF19 (chloroplast) [Premna microphylla]
 gb|AJE28434.1| hypothetical chloroplast RF19 (chloroplast) [Premna microphylla]
          Length = 1891

 Score =  295 bits (756), Expect = 2e-89
 Identities = 144/175 (82%), Positives = 152/175 (86%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN     AV+ EMSQYFF ICQSDGKERISFTYPPSLSIF EM
Sbjct: 392 VTLLFDSKRWNRPFRYIKNNQFGKAVRKEMSQYFFEICQSDGKERISFTYPPSLSIFLEM 451

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRI  P LE+F+ NELYNPWV+TN+QKGKSFNNEFLNRI+ALDKE ISLNI ETRTRL
Sbjct: 452 IKRRIPAPRLEEFSFNELYNPWVYTNRQKGKSFNNEFLNRIKALDKEDISLNIFETRTRL 511

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD PK+YLSK YDP LN SYRK IYKNLSPS LKK LIENFIEKFGINRIHG+
Sbjct: 512 CNDDSPKEYLSKSYDPLLNGSYRKTIYKNLSPSTLKKLLIENFIEKFGINRIHGL 566


>gb|AFI72645.1| Ycf1, partial (plastid) [Phryma leptostachya]
          Length = 1376

 Score =  293 bits (749), Expect = 8e-89
 Identities = 143/175 (81%), Positives = 153/175 (87%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           + LLFDSKRWNRPFRYIKNT    AV+N+MSQYFF +CQSDGK+RISFTYPPSL IFFEM
Sbjct: 14  ITLLFDSKRWNRPFRYIKNTQFKRAVRNQMSQYFFEMCQSDGKDRISFTYPPSLCIFFEM 73

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS PTLE ++SNELYNPW +TNKQKGKS NNEF+NRIEALDKESI LNILETRTRL
Sbjct: 74  IKRRISPPTLENYSSNELYNPWFYTNKQKGKSLNNEFINRIEALDKESICLNILETRTRL 133

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  KKYLSKRYDPFLN SYRK I KN SPSILKK LI+N IEKFGINRIH I
Sbjct: 134 CNDDSTKKYLSKRYDPFLNGSYRKTIDKNPSPSILKKNLIKNLIEKFGINRIHSI 188


>ref|YP_009108418.1| hypothetical chloroplast RF19 (chloroplast) [Orobanche californica]
 emb|CDH98539.1| hypothetical chloroplast RF19 (chloroplast) [Orobanche californica]
          Length = 1818

 Score =  290 bits (742), Expect = 1e-87
 Identities = 142/175 (81%), Positives = 155/175 (88%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           VNLLFDSKRW RPFRYIKNT+ +G V+NEMSQYFFNIC+SDGKER+SFTY PSLSIFFEM
Sbjct: 364 VNLLFDSKRWIRPFRYIKNTYFNGTVRNEMSQYFFNICKSDGKERMSFTYLPSLSIFFEM 423

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRISLPTLEK ++N+L NPW +TNKQK KS NNEF+NRIEALDKE IS NILETRTRL
Sbjct: 424 IKRRISLPTLEKSSTNKLSNPWFYTNKQKSKSLNNEFINRIEALDKEFISFNILETRTRL 483

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDDY K+YLSKRYDPFLN+SYRK IYKN S    KKTLIEN IEKFGIN+IHGI
Sbjct: 484 CNDDYTKEYLSKRYDPFLNKSYRKKIYKNFSLPTPKKTLIENLIEKFGINQIHGI 538


>gb|ADX62247.1| Ycf1, partial (chloroplast) [Ocimum basilicum]
          Length = 1522

 Score =  288 bits (738), Expect = 4e-87
 Identities = 142/177 (80%), Positives = 153/177 (86%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D  V+NEMSQYFF+IC+SDG+ERISFTYPP LSIF EM
Sbjct: 41  VTLLFDSKRWNRPFRYIKNNQFDKVVRNEMSQYFFDICKSDGEERISFTYPPGLSIFLEM 100

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P  EKF SNELYNPWV+TNKQKGK+FNNEF NRI+ALDKE+ SLN+LETRTRL
Sbjct: 101 IKRRISPPLFEKFTSNELYNPWVYTNKQKGKNFNNEFQNRIKALDKEAFSLNVLETRTRL 160

Query: 362 YNDD--YPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD    K+YLSKRYDPFLN SYRK IYKNLSPS LK TLIENFI+KF INRIHGI
Sbjct: 161 CNDDSTSTKEYLSKRYDPFLNGSYRKTIYKNLSPSTLKTTLIENFIDKFEINRIHGI 217


>gb|AFI72646.1| Ycf1, partial (plastid) [Prostanthera incisa]
          Length = 1524

 Score =  288 bits (738), Expect = 4e-87
 Identities = 143/175 (81%), Positives = 152/175 (86%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRP RYIKN   D AV+NEMSQYFF ICQSDGKERISFTYPPSLSIFFEM
Sbjct: 44  VTLLFDSKRWNRPSRYIKNNQFDRAVRNEMSQYFFEICQSDGKERISFTYPPSLSIFFEM 103

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKR+IS   LEKF  NELYNPWV+TN++KGKSFNNEFLNRI+ALDKE ISLNI+ETRTRL
Sbjct: 104 IKRKISSHPLEKFPYNELYNPWVYTNQEKGKSFNNEFLNRIKALDKEEISLNIVETRTRL 163

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            ND   K+YL K YDPFLN SYRK IYK LSPSILKKTLIENFI+KF INRIHGI
Sbjct: 164 CNDYSTKEYLPKSYDPFLNGSYRKTIYKKLSPSILKKTLIENFIDKFRINRIHGI 218


>gb|ARV78722.1| Ycf1, partial (chloroplast) [Perillula reptans]
          Length = 1143

 Score =  286 bits (732), Expect = 4e-87
 Identities = 141/175 (80%), Positives = 151/175 (86%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D   +NEMSQYF +ICQSDGKE+ISFTYPPSLSIF EM
Sbjct: 39  VTLLFDSKRWNRPFRYIKNNQFDRISRNEMSQYFCHICQSDGKEKISFTYPPSLSIFLEM 98

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P  EKF+SNELYNPWV+TNKQKGK+FNNEF NRI+ALDKE+ISLN+LETRTRL
Sbjct: 99  IKRRISPPLFEKFSSNELYNPWVYTNKQKGKNFNNEFQNRIKALDKEAISLNVLETRTRL 158

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  K+YLSK YDPFLN SYRK IYKNLS S LK TLI NFIEKF INRIHGI
Sbjct: 159 CNDDSTKEYLSKGYDPFLNGSYRKTIYKNLSSSTLKNTLIGNFIEKFEINRIHGI 213


>gb|ARV78721.1| Ycf1, partial (chloroplast) [Perillula reptans]
          Length = 1144

 Score =  286 bits (732), Expect = 4e-87
 Identities = 141/175 (80%), Positives = 151/175 (86%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D   +NEMSQYF +ICQSDGKE+ISFTYPPSLSIF EM
Sbjct: 39  VTLLFDSKRWNRPFRYIKNNQFDRISRNEMSQYFCHICQSDGKEKISFTYPPSLSIFLEM 98

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P  EKF+SNELYNPWV+TNKQKGK+FNNEF NRI+ALDKE+ISLN+LETRTRL
Sbjct: 99  IKRRISPPLFEKFSSNELYNPWVYTNKQKGKNFNNEFQNRIKALDKEAISLNVLETRTRL 158

Query: 362 YNDDYPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD  K+YLSK YDPFLN SYRK IYKNLS S LK TLI NFIEKF INRIHGI
Sbjct: 159 CNDDSTKEYLSKGYDPFLNGSYRKTIYKNLSSSTLKNTLIGNFIEKFEINRIHGI 213


>ref|YP_009388828.1| hypothetical chloroplast RF19 (chloroplast) [Ocimum basilicum]
 gb|ARU77299.1| hypothetical chloroplast RF19 (chloroplast) [Ocimum basilicum]
          Length = 1845

 Score =  288 bits (738), Expect = 4e-87
 Identities = 142/177 (80%), Positives = 153/177 (86%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2   VNLLFDSKRWNRPFRYIKNTHIDGAVKNEMSQYFFNICQSDGKERISFTYPPSLSIFFEM 181
           V LLFDSKRWNRPFRYIKN   D  V+NEMSQYFF+IC+SDG+ERISFTYPP LSIF EM
Sbjct: 364 VTLLFDSKRWNRPFRYIKNNQFDKVVRNEMSQYFFDICKSDGEERISFTYPPGLSIFLEM 423

Query: 182 IKRRISLPTLEKFASNELYNPWVFTNKQKGKSFNNEFLNRIEALDKESISLNILETRTRL 361
           IKRRIS P  EKF SNELYNPWV+TNKQKGK+FNNEF NRI+ALDKE+ SLN+LETRTRL
Sbjct: 424 IKRRISPPLFEKFTSNELYNPWVYTNKQKGKNFNNEFQNRIKALDKEAFSLNVLETRTRL 483

Query: 362 YNDD--YPKKYLSKRYDPFLNRSYRKIIYKNLSPSILKKTLIENFIEKFGINRIHGI 526
            NDD    K+YLSKRYDPFLN SYRK IYKNLSPS LK TLIENFI+KF INRIHGI
Sbjct: 484 CNDDSTSTKEYLSKRYDPFLNGSYRKTIYKNLSPSTLKTTLIENFIDKFEINRIHGI 540