BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00027099
         (1573 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subt...   441   e-136
dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subt...   419   e-131
gb|KYP46236.1| Putative ribonuclease H protein At1g65750 family ...   386   e-126
dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subte...   411   e-125
dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subt...   408   e-125
dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subte...   404   e-125
gb|PNX74000.1| ribonuclease H [Trifolium pratense]                    386   e-124
dbj|GAU50545.1| hypothetical protein TSUD_409890 [Trifolium subt...   381   e-122
gb|PNX79261.1| ribonuclease H [Trifolium pratense]                    381   e-122
dbj|GAU27143.1| hypothetical protein TSUD_104520 [Trifolium subt...   382   e-122
gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense]           387   e-121
gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]           390   e-121
dbj|GAU24016.1| hypothetical protein TSUD_328180 [Trifolium subt...   378   e-120
gb|PNX71669.1| ribonuclease H [Trifolium pratense]                    376   e-120
gb|KYP35971.1| Putative ribonuclease H protein At1g65750 family ...   368   e-117
gb|PNY09839.1| ribonuclease H [Trifolium pratense]                    382   e-116
dbj|GAU35274.1| hypothetical protein TSUD_274760 [Trifolium subt...   372   e-116
gb|PNX94516.1| ribonuclease H [Trifolium pratense]                    378   e-114
dbj|GAU44081.1| hypothetical protein TSUD_399630 [Trifolium subt...   355   e-113
gb|PNY14982.1| ribonuclease H [Trifolium pratense]                    372   e-112

>dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subterraneum]
          Length = 1688

 Score =  441 bits (1134), Expect = e-136
 Identities = 209/512 (40%), Positives = 299/512 (58%), Gaps = 24/512 (4%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            Q++PTYCMSVFLLP +LGEE+QRM+NS+WWGS +  GR INW+ WDKL + K  GG+GFR
Sbjct: 1175 QSIPTYCMSVFLLPTTLGEEIQRMLNSFWWGSNRNNGRGINWLSWDKLTMRKEHGGMGFR 1234

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + + FNLA+L K GWK+ +N DT+++RI+KA+Y+PRG+FL + LG NPSF WRSI +S+ 
Sbjct: 1235 HLYGFNLAMLGKQGWKLATNHDTIVARIFKARYYPRGNFLEANLGHNPSFIWRSIHTSQV 1294

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++K G RW +GDGKSI++W D WLR+ +N ++T+  + G E + VH+L   G  EW  ++
Sbjct: 1295 IVKGGIRWRLGDGKSIRVWRDAWLRNEANSYVTTPMILGREDMCVHDLIEEGGREWRRSL 1354

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIID-ANLVCPG 717
            I   F +RD   IL  P+F +V+ D   W  S+ G Y+VKS Y   + +++D   L   G
Sbjct: 1355 IMGSFNERDARCILSTPLFGDVQEDVPSWKHSRNGEYSVKSAYYYTMENLVDNTGLRVEG 1414

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W +IW+L+IP K+K FLWR  R CLPTRY L +KGV+    CA+C +  EN+WH+F  C
Sbjct: 1415 NWGKIWELKIPQKMKVFLWRAARGCLPTRYRLQQKGVNCPHTCAYCQNNFENDWHVFFGC 1474

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              A   W  + +   +     + + F      +LE  S           W IWK+RN KI
Sbjct: 1475 VKAQEIWEEAGLWSFIEGMFESTEGFVSLFFSLLELLSQHKIILFVAAFWCIWKRRNQKI 1534

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKYPAHESG-----------------------TA 1188
            W +     + +++ A   +  W+ A+  +   ++                        T+
Sbjct: 1535 WEDIELHPSVSLQLASDIIYQWKTAQTSHQRQQTSAAILPHSAATRNASGEERSVSVTTS 1594

Query: 1189 AVCAYWHPPKFAELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGE 1368
            AV   W PP    LKCN+DAA F++Q  FG GM +RD  G  I  +T W  G     E E
Sbjct: 1595 AVRVIWTPPVQGMLKCNVDAAIFKEQNCFGAGMCLRDDKGNFIRAQTTWNYGNPLPYEAE 1654

Query: 1369 CRGLLEGLTWMKNLGLSKVTFEIDAKSVTDAL 1464
              GL   ++W++NLG   V  E+D K V D +
Sbjct: 1655 AWGLKAAISWLRNLGYVNVVIELDCKLVVDGI 1686


>dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subterraneum]
          Length = 1229

 Score =  419 bits (1078), Expect = e-131
 Identities = 207/534 (38%), Positives = 301/534 (56%), Gaps = 10/534 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+YCM  FLLP +LGEE++RM+NS++WG+KK GGR INW+ WDK+   K  GGL FR
Sbjct: 672  QAVPSYCMGAFLLPTTLGEEIERMMNSFYWGTKKHGGRGINWLRWDKMTTCKENGGLNFR 731

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +   FNLA+L K GWK+ +N  +L++R+ KAKYFPR  FL + +G NPS+TWRSI S+  
Sbjct: 732  DLEGFNLAMLGKQGWKLITNSSSLLTRVLKAKYFPRNGFLEANIGHNPSYTWRSIQSTIP 791

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            L+ LG RW IGDG +I +W  PW+R   N   T+        L V +LF P TN W+  +
Sbjct: 792  LLTLGYRWKIGDGSNINVWSAPWIRSRPNMRPTTAAHANYANLCVSDLFDPITNSWNHTL 851

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV 720
            I   F  +D   I +IP+ S    D +IW  S  GNYTVKS YK+ +      +    G 
Sbjct: 852  IASIFNGQDTADICRIPLHSRALHDSIIWKSSPNGNYTVKSAYKLCLQLTSHDSFNVSGD 911

Query: 721  WSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSCE 900
            W +IW +QIPPK+K+F WR+ R CLPTR  L  +GV+    CA C +  E+  H+F  C 
Sbjct: 912  WRKIWTMQIPPKLKHFCWRMLRYCLPTRLKLHIRGVNCQTTCAVCSNATEDELHLFFDCP 971

Query: 901  FAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKIW 1080
             A++CW+  N+   +   ++    F+     +L       +A+   ILW+IW+ RN  +W
Sbjct: 972  HAISCWKELNLWQRLEQKMHQSGSFSSIIFAILADLDADTQARFVAILWSIWRTRNDCLW 1031

Query: 1081 NNR-------CATATDTIKQ---AISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAEL 1230
             ++       C  ATD +       + +DT +++    P H          W  P+   L
Sbjct: 1032 EHKQPSTVTTCRLATDIVSDYTWCCNMLDTTQSSP---PVHR---------WKKPEANWL 1079

Query: 1231 KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 1410
            KCN+D A F  + KFG G+  R+  G ++   TM+FP EV V E E   L   L    + 
Sbjct: 1080 KCNVDGAIFSTEGKFGIGICFRNDQGILVQAHTMYFPFEVTVNECEASALKYALLIALSS 1139

Query: 1411 GLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            G  +V FE D+++V +++ +      E G ++ AC ++LS   +Y V +V R+A
Sbjct: 1140 GFERVIFESDSQTVVNSILNDYRYENELGSLLSACKSLLSVIASYNVAFVRRQA 1193


>gb|KYP46236.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 507

 Score =  386 bits (992), Expect = e-126
 Identities = 184/471 (39%), Positives = 274/471 (58%), Gaps = 7/471 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            Q++P+Y MSVFL+P SLG+E+QRM+NS+WWGS +  G+ I+W+ W+KL + K  GG+GFR
Sbjct: 43   QSIPSYYMSVFLIPSSLGDEIQRMLNSFWWGSNRHSGKGIHWLSWEKLSMRKEHGGMGFR 102

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            N + FNLA+L K GWK  +N D +++R++KAKYFPRGDFL + LG NPSFTWRSI +S+ 
Sbjct: 103  NLYGFNLAMLGKQGWKFLTNQDAIVTRVFKAKYFPRGDFLGANLGHNPSFTWRSIHASQV 162

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IG+G  I  W DPWLR     ++TS    G E + + +L       W  ++
Sbjct: 163  VVMGGMRWCIGNGLRINPWIDPWLRQQGKPYVTSLPSAGYEEIRIADLIDFENGTWKFDL 222

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLV-CPG 717
            I   F  RDV+ I  IP+    E D L W+ ++ G+Y+VKS Y +++ S++  ++   PG
Sbjct: 223  INRIFNQRDVDAIKDIPLLQLDEADTLTWNLNRKGSYSVKSAYYLIMESLLCNSISRLPG 282

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W ++W L IP  +K FLWR+ RDCLP+R  L +KGV  T +C  C++  ENNWHIF  C
Sbjct: 283  DWKKLWALPIPHNMKIFLWRLLRDCLPSRQRLQQKGVPCTSLCPHCEAAQENNWHIFFGC 342

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            + A   W+++ +   +   ++  +   +    +L   S S   ++ + L  IW++RN+K+
Sbjct: 343  QEAQTVWQATGIWQHIKSLIDVGEGIVEVIFSLLGSISQSHIVEVVVTLSCIWRRRNAKV 402

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKY------PAHESGTAAVCAYWHPPKFAELKCN 1239
            W+     +     QA  +   W+AA+ +       P H+         W  P      CN
Sbjct: 403  WDQGAPPSGVATSQAKQYFRDWQAAQARSSTQRTPPVHD-------LQWKKPHAGTFTCN 455

Query: 1240 IDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGL 1392
            IDAA FQD   FG  M +R+ +G  +  +T W  G   V E E   LL  +
Sbjct: 456  IDAALFQDSSYFGYSMCIRNDHGQFLTAKTGWAHGLPPVHEAEATALLTAI 506


>dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subterraneum]
          Length = 1601

 Score =  411 bits (1057), Expect = e-125
 Identities = 200/525 (38%), Positives = 291/525 (55%), Gaps = 1/525 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            Q++PTYCMS FLLP +LGEE+QRMINS+WWG+ +  GR INW+ WDKL + K  GG+GFR
Sbjct: 1071 QSIPTYCMSTFLLPTTLGEEIQRMINSFWWGTNRRQGRGINWLSWDKLTMRKEFGGMGFR 1130

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + + FNLA+L K GWK+ +N DT+++RI+KA+YFP       E+ S              
Sbjct: 1131 HLYGFNLAMLGKQGWKLLTNQDTIVARIFKARYFPNCGASVMEVES-------------- 1176

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
                             +W +PWLRD +N H+TS  V G E   + +L   GT  W+  +
Sbjct: 1177 ----------------IVWSEPWLRDEANSHVTSAMVQGWEHTRIIDLIHQGTKSWNWEL 1220

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSII-DANLVCPG 717
            I   F  RD E+I ++P+      D+ IW ++  G YTVKS Y+  ++++I +     PG
Sbjct: 1221 IGRLFNARDKEEISRLPIVGMEGKDKRIWRYNNKGIYTVKSAYRFAMDTLINNEQYKIPG 1280

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  IW+L IP +VK FLWR+   CLPTR  L  +GV  T +C  C++  EN+WH+F+SC
Sbjct: 1281 DWMLIWKLSIPQRVKIFLWRIAIGCLPTRDRLQSRGVQCTDLCPHCETTYENDWHLFVSC 1340

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              A   WR +N+   V   V T     D+    L   +   +++  ++LW +WK RN KI
Sbjct: 1341 NKAHEVWREANLWDEVCSVVETVSCIKDFIFAALAALAEPRRSEFVMMLWCLWKCRNDKI 1400

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAFF 1257
            W ++       ++ A   +  WR AR +        +     W PP   ++KCNIDAA F
Sbjct: 1401 WEDKVQPVRVGMQLARDMLYQWRNARRREDTTGHHDSHNVIQWQPPPIGKVKCNIDAALF 1460

Query: 1258 QDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFEI 1437
             +Q KFG GM +RD +G  +  RT WF G    +E E   L E +TWM  L LS+V  E+
Sbjct: 1461 NEQHKFGLGMCIRDDHGIFVKARTKWFHGSPPPVEAEAWALKEAITWMGELELSRVVIEL 1520

Query: 1438 DAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            D   V +A+       +EFG +I  C+ +L + P +++ +V R+A
Sbjct: 1521 DCLLVVNAIKSNSNNQSEFGHIISDCHRLLENYPNFEISFVKRQA 1565


>dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subterraneum]
          Length = 1362

 Score =  408 bits (1048), Expect = e-125
 Identities = 193/530 (36%), Positives = 301/530 (56%), Gaps = 6/530 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P Y MS++LLP SL ++++RMIN++WWG   +  + I W+ W ++   K EGGLGFR
Sbjct: 798  QAIPAYVMSIYLLPDSLIDDIERMINAFWWGGG-DNNKGIRWLAWKRMACPKEEGGLGFR 856

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +F  FN+A+LAK GW + +NP++L+++++KA+YFP    L+S+LG+NPSFTWRSIW SR+
Sbjct: 857  DFQLFNMAMLAKQGWNLINNPNSLVAKVFKARYFPHSSLLDSKLGNNPSFTWRSIWKSRK 916

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IGDG +IK+  +PWLR      + S Q   +  L++ +L +P +  WD++ 
Sbjct: 917  VLLHGCRWSIGDGSNIKVMGEPWLRVEDGGWVESPQNQCVYNLSIQQLMLPNSKHWDVDK 976

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPG- 717
            I   F +R    IL +P+   VE DR++W+    G Y+V+SGY+ L+     ++    G 
Sbjct: 977  IHSLFSERVANMILAVPLLHLVERDRVVWNEESDGIYSVRSGYRKLLKEKNSSSRPRGGE 1036

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  +W++  PPK K+ LWR+C++CLPTR  L  + V     C FC    E  WH+F  C
Sbjct: 1037 AWGALWKVHAPPKAKHLLWRICKECLPTRTRLRNRHVQCPIECPFCLVVPEEEWHMFFDC 1096

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            E     W S+ +  ++    + F   +D    +       +  K   +LW IW+ RNS +
Sbjct: 1097 EGHKDAWSSAGLHQIIQTRFDKFYNISDLLFDICRLEDKQVAGKTATLLWCIWQNRNSNV 1156

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKYPAHESG-----TAAVCAYWHPPKFAELKCNI 1242
            WNN   +A     QA+   + W  A+     + S      T  V   W  P+F  +KCN+
Sbjct: 1157 WNNNKLSAQQVGIQAVHLWNEWAMAQGMLDEYHSQDQQLLTPRVAVQWQQPQFGIVKCNV 1216

Query: 1243 DAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSK 1422
            DA+F+      G G  VRDH G  I+  T      + ++EGE   + E +  M   G S 
Sbjct: 1217 DASFYDIAGATGWGWCVRDHQGRYIIAGTNLLQARLNILEGEAMAIKEAMEEMLQRGFSH 1276

Query: 1423 VTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            V FE D+K V DA+  ++E  ++F  +I +  ++L S P ++V++V R+A
Sbjct: 1277 VIFESDSKIVVDAISSRQEGISDFSLLISSIQSLLMSNPNFEVKFVKRQA 1326


>dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subterraneum]
          Length = 1194

 Score =  404 bits (1038), Expect = e-125
 Identities = 193/530 (36%), Positives = 300/530 (56%), Gaps = 6/530 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P Y M+++LLP SL  +++RMIN++WWG   +  + I W+ W+KL  +K EGGLGFR
Sbjct: 630  QAIPAYVMNIYLLPDSLINDIERMINAFWWGGG-DNNKGIRWLAWNKLTCTKEEGGLGFR 688

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +F  FN+A++AK GWK  +NP++L++RI+KA+YFPR  FL+S LG+NPSF WRSIW SRQ
Sbjct: 689  DFQKFNMAMVAKQGWKFLNNPNSLVARIFKARYFPRSSFLDSCLGTNPSFIWRSIWKSRQ 748

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IGDG +IK+  +PWLR      + + Q   +  L++ +L IP   +WD+  
Sbjct: 749  VLLQGCRWSIGDGSNIKVMGEPWLRVEDGRWVAAPQKQDVYNLSIQQLMIPNLKQWDVEK 808

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPG- 717
            I   F + +  +I+ +P+   VE DR+IW     G Y+V+SGY+ L+           G 
Sbjct: 809  INLLFPENEAHKIIAVPLLHMVEADRVIWSAESNGVYSVRSGYRKLMQESNSTFRQTEGE 868

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  + ++Q P K K+ LWR+C+DCLPTR  L  + V     C+ C  + E  WH+F  C
Sbjct: 869  AWGDLCKVQAPLKAKHLLWRICKDCLPTRTRLRNRYVQCLIECSLCVLEPEEEWHMFFEC 928

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            E ++  W    + H++    + F+   D    +    +  +  K+  +LW +W+ RN+K+
Sbjct: 929  EGSIDAWSVVGLNHIILPRSHKFNNIRDLLFDICRYENKQVAGKMATLLWCLWQNRNNKV 988

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCA-----YWHPPKFAELKCNI 1242
            W N   +A     QA    + W   +      +SG   + A      WH P+F  +KCN+
Sbjct: 989  WKNNKLSAQQVGVQAAHMWNEWSVVQGISSEQQSGEQQLVANRPTIQWHNPRFGYVKCNV 1048

Query: 1243 DAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSK 1422
            DA+FF      G G  VRDH G  I+  +      + ++EGE   + E +  M   G S 
Sbjct: 1049 DASFFNIAGATGWGWCVRDHQGRFIIAGSNIMQARLNILEGEAMAIKEAMIEMTQKGFSH 1108

Query: 1423 VTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            V  E D+K+V DA+   +   +EF  +I +  ++L S P ++V++V R+A
Sbjct: 1109 VIIESDSKTVIDAISSSQVGISEFSLLISSIKSLLVSNPNFEVKFVKRQA 1158


>gb|PNX74000.1| ribonuclease H [Trifolium pratense]
          Length = 652

 Score =  386 bits (991), Expect = e-124
 Identities = 197/577 (34%), Positives = 296/577 (51%), Gaps = 53/577 (9%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P Y M+++LLP SL  +++RMIN++WWG      + I W+ WDK+   K  GGLGFR
Sbjct: 43   QAIPAYVMNIYLLPDSLVNDIERMINAFWWGGGSNN-KGIRWLAWDKMAWPKEMGGLGFR 101

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +FH FN+A++AK GW   + P++L++RI+KA+YFP+    +S LG NPSFTWRSIW SRQ
Sbjct: 102  DFHMFNMAMVAKQGWNFINKPNSLVARIFKARYFPQSSLFDSSLGHNPSFTWRSIWKSRQ 161

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IGDG  IK+  +PWLR      + S Q  GM  LT+  L +P   +WD   
Sbjct: 162  VLTNGCRWRIGDGSKIKVMGEPWLRVEDGCWLASPQCEGMYNLTIKHLMLPDNKQWDDEK 221

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCP-- 714
            ++  F ++D   IL +P+   VE D++IW+    G YTV+SGY+ L+       LV P  
Sbjct: 222  VKLLFSEKDANMILAVPLVHLVEEDKIIWNEESDGLYTVRSGYRKLMKE--KMVLVGPRE 279

Query: 715  -GVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFL 891
               W  +W++Q PPK K+ LWR+C++CLPTR  L  + V  ++ C  C  + E  WH+  
Sbjct: 280  ENTWGSLWKIQAPPKAKHLLWRICKECLPTRTRLRSRFVMCSEECPICLREPEEEWHLLF 339

Query: 892  SCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNS 1071
            SCE     W    + H++   +N    F D    +    S  +  ++ ++L NIW+ RN+
Sbjct: 340  SCEGIKDAWNVMGLYHIMQTRLNHCHNFKDLIFDICRNESKQVAGRVAVLLRNIWQNRNN 399

Query: 1072 KIWNNRCATATDTIKQAISFMDTW--------------------RAARLKYP-------- 1167
             +WNN  ++A     QA    + W                    R  +   P        
Sbjct: 400  YVWNNNKSSAQQIGMQAAHMWNEWAMVQGLFEEQQTQEQQQQMHRPQQYSTPQQHIYQSQ 459

Query: 1168 ----------------------AHESGTAAVCAYWHPPKFAELKCNIDAAFFQDQRKFGC 1281
                                  A    TA     W  P    +KCN+DA+F+   +  G 
Sbjct: 460  HEQRHQRHGQQQSLHIQQQCTRAQHQQTAPTVQQWRNPPPGVVKCNVDASFYDTVKATGW 519

Query: 1282 GMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFEIDAKSVTDA 1461
            G   RDH+G  I+  T     ++  +EGE   + E +  M   GLS V FE   K V DA
Sbjct: 520  GWCARDHHGRFIIAGTNIMYSKLNTIEGEAMAIKEAMEEMIQRGLSHVIFESXXKIVVDA 579

Query: 1462 LGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            +  ++   +EF  +I    ++L   P+++V++V R+A
Sbjct: 580  ISSRQIGISEFSMLISCIKSLLLLNPSFEVKFVKRQA 616


>dbj|GAU50545.1| hypothetical protein TSUD_409890 [Trifolium subterraneum]
          Length = 607

 Score =  381 bits (979), Expect = e-122
 Identities = 180/534 (33%), Positives = 285/534 (53%), Gaps = 10/534 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            Q++ +Y MSV+L+P    ++++RMINS+WWG  +   R I W+ WD++   K  GGLGFR
Sbjct: 43   QSILSYVMSVYLIPEMTIKKIERMINSFWWGGGRANNRGIKWLAWDRMTYPKEYGGLGFR 102

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            N H FN+A++AK GW     P +L++++YKA+YFP      + LG+NPS+ WRSIW SR 
Sbjct: 103  NLHLFNMAMVAKQGWNFIMKPHSLVAKVYKARYFPNSSLFEAHLGNNPSYAWRSIWKSRH 162

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IGD   IK+  +PWLR      + S Q  G   + V++L +P    WD N 
Sbjct: 163  VLMNGCRWRIGDVTKIKVMNEPWLRKEDGLWVQSPQQQGAFDMFVNQLMLPNEKVWDSNK 222

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV 720
            I   F     + IL +P+F   E D+LIW +   GNY VKSGY +L+N II A   C   
Sbjct: 223  IHTLFPLHIAKSILDVPLFDQFEEDKLIWLYDTHGNYNVKSGYNLLLNPIICAVTPCENE 282

Query: 721  WSR-IWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
              + +W++Q PPK K+ LWR+C++CLPTR  L  + V+    C  C ++ E++WH    C
Sbjct: 283  ELKWLWKIQAPPKAKHLLWRICKECLPTRTRLRERFVNCPLECPMCGNETESDWHFLFDC 342

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              +   W+++ +  +++  V       +  +K+  G+      K+ +++W +W  RN+ +
Sbjct: 343  MDSKRAWQTAGLEAIISSQVQQHMTVKEALLKLCRGTDVQNAGKLAMVVWALWNNRNNWV 402

Query: 1078 WNNRCATATDTIKQAISFMDTWRA---------ARLKYPAHESGTAAVCAYWHPPKFAEL 1230
            WN+   +      +       WR           RL+   H +        W  P     
Sbjct: 403  WNHTKESGQQLGVKTTCLWSEWRVVQDSNNISRTRLQVQQHIA--------WQKPLHGHY 454

Query: 1231 KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 1410
            KCN+DA F   + K   G  VRD+ G  I+  T+W P + +++EGE   +LE +  ++  
Sbjct: 455  KCNVDAGFHDAEGKTSAGWCVRDYMGRFIMAGTVWMPEKCSIIEGEAMAMLEAMKELERQ 514

Query: 1411 GLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            G + V FE D+K+V DA+       ++F  ++     ILS    + V+ + R+A
Sbjct: 515  GFTNVIFETDSKNVADAIQSMHNGVSDFSVIVTKIRCILSLNSDFVVKSIKRQA 568


>gb|PNX79261.1| ribonuclease H [Trifolium pratense]
          Length = 620

 Score =  381 bits (979), Expect = e-122
 Identities = 182/526 (34%), Positives = 287/526 (54%), Gaps = 2/526 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+PTY MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K +GGLGFR
Sbjct: 60   QAIPTYVMSVYLLPDSTVKDIERMLNSFWWGGGANN-KGIRWLAWDRMTYPKTQGGLGFR 118

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + H FNLA++AK GW I + P TL+SR+YKA+YFP      S++G NPS+ WR IW +R+
Sbjct: 119  DIHMFNLAMIAKQGWNIMTKPHTLVSRLYKARYFPNSSLFESKIGHNPSYAWRGIWKARE 178

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IG G SIKI  +PWLR   +  + S Q+ G+   T ++L +P    WD   
Sbjct: 179  ILMNGCRWSIGSGTSIKIMSEPWLRGQGSVWLPSPQIQGVHNFTTNDLMLPNMKVWDKEK 238

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV 720
            IE  F       IL+ P+   +E D+LIW     G Y+VKSGYK+L+      ++     
Sbjct: 239  IESIFPMHIANCILETPLLDIIENDKLIWADDMHGQYSVKSGYKLLLTGTGKVDVGSQQK 298

Query: 721  -WSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             WS +W +  PPK K+ LWR+ + CLPTR  L  + V  + +C  C+   E++WH+F  C
Sbjct: 299  DWSSLWSILAPPKAKHLLWRIVKGCLPTRMRLQERRVPCSLLCPLCNQHNEDDWHVFFGC 358

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              +    +++ +  ++   +  F   AD    +    +        +++W +W  RN+ +
Sbjct: 359  ATSHQARQAAGLEQIITPRLQQFCSVADMIFSICLTENKETAGTFAMLVWILWNNRNNCV 418

Query: 1078 WNNRCATATDT-IKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAF 1254
            WN+     T   +K    + + +  A+++    +         W  P     KCN+DAAF
Sbjct: 419  WNDNNEPGTSLGVKTRHLWNEWFSVAQVQQNRSQIAQQQQDTRWQKPVQGWYKCNVDAAF 478

Query: 1255 FQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFE 1434
             +++ +   G  +RD  G  ++  T W  G  +++EGE   LLE L  ++  G+S V FE
Sbjct: 479  HKERNRSSFGWCLRDDEGRFVMAETTWLNGNCSIIEGESIALLEALKVLEQRGISHVIFE 538

Query: 1435 IDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
             D+KSV DA+ +     +EF  +I      L   P +KV+++ R+A
Sbjct: 539  TDSKSVVDAIHNLRSGSSEFSSIICLIKNTLLCNPNFKVKFIKRQA 584


>dbj|GAU27143.1| hypothetical protein TSUD_104520 [Trifolium subterraneum]
          Length = 699

 Score =  382 bits (982), Expect = e-122
 Identities = 182/511 (35%), Positives = 277/511 (54%), Gaps = 2/511 (0%)
 Frame = +1

Query: 28   VFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFRNFHYFNLAL 207
            ++L+P +  +E++RM+NS+WWG     G  I W+ WD++   K  GGLGFRN H FN+A+
Sbjct: 120  MYLIPETNIKEIERMLNSFWWGGGSNNGG-IKWLAWDRIPYLKAYGGLGFRNLHLFNMAM 178

Query: 208  LAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQLIKLGTRWI 387
            +AK GWK  +NP++L++R+YKA+YFP   F  S LG+NPS+ WRSIW SRQ++  G RW 
Sbjct: 179  VAKQGWKFATNPNSLVARVYKARYFPNSTFFASHLGNNPSYAWRSIWKSRQVLMNGCRWR 238

Query: 388  IGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNIIEEYFCDRD 567
            IGDG  I +  +PWLR      + S Q   +  L V++L +P    WD N I   F    
Sbjct: 239  IGDGTKINVTNEPWLRMEDGKWMQSPQDHEVSNLYVNQLMLPNEKVWDSNKIHTLFSSNV 298

Query: 568  VEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV-WSRIWQLQ 744
               IL +P+F N+  D L+W     GNY VKSGY +L+ S ++A+ +     W  +W++Q
Sbjct: 299  ANSILAVPLFDNIGEDYLVWDDDTHGNYNVKSGYNLLLQSTLEASAIQEEEDWKWLWKIQ 358

Query: 745  IPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSCEFAVACWRS 924
             PPK K+ LWR+CR CLPTR  L  + V  T  C  C+ + EN+WH+   CE +   WRS
Sbjct: 359  APPKTKHLLWRICRGCLPTRSRLKERNVQCTTSCPICEEEEENDWHLLYDCETSKRAWRS 418

Query: 925  SNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKIWNNRCATAT 1104
            + ++H++   V       +  +K+   S      K  +++W +WK RN+ +WN+      
Sbjct: 419  AGIVHIIQPHVQQAITTKECIMKLCRNSDRKEAGKAAMLIWMLWKNRNNCVWNHEKEQGQ 478

Query: 1105 DTIKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAFFQDQRKFGCG 1284
            +   +A+S+   W A +  Y +  +        W  P   + KCN+D       RK   G
Sbjct: 479  ELGIKALSYWHEWEAVQNTYSSGRNQVQKQLLSWKTPPQGKHKCNVDMGCNAAARKTSAG 538

Query: 1285 MVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWM-KNLGLSKVTFEIDAKSVTDA 1461
              VRD+ G  +   + W  G+ ++ EGE   LLE +  + +  G   V FE DA+++  A
Sbjct: 539  WCVRDYRGQFVFGGSSWIHGKCSINEGEALALLEAMKELQQQRGFKDVIFETDAQNIVYA 598

Query: 1462 LGDKEERHTEFGRMIRACNAILSSEPTYKVQ 1554
               +    +EF  +I     ILS    ++ Q
Sbjct: 599  FHHRNTGRSEFSSIIHKIKCILSLNSDFEWQ 629


>gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense]
          Length = 917

 Score =  387 bits (995), Expect = e-121
 Identities = 188/532 (35%), Positives = 288/532 (54%), Gaps = 8/532 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MSV+LLP  + ++++RM+NS+WWG      + I W+ WD++ + K++GG+GFR
Sbjct: 357  QAIPSYVMSVYLLPDGVIKDIERMMNSFWWGGGANN-KGIRWLAWDRMTIPKDQGGMGFR 415

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + H FNLA++AK GW I + P T+++++YKA+YFP      S+LG NPS+ WR IW +RQ
Sbjct: 416  DLHSFNLAMIAKQGWNIMTKPHTILAKLYKARYFPNSSLFESKLGHNPSYAWRGIWKARQ 475

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW +G+GK+IK+  +PWLR  +   + S Q  G+    V++L +     WD + 
Sbjct: 476  ILMNGCRWRVGNGKNIKVMSEPWLRGENGAWLPSPQDQGVHNYNVNDLMMSNVTMWDKDK 535

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLV---NSIIDANLVC 711
            IE  F      +IL IP+F  VE D+L+W  S  GNY VKSGYK+++     + DA    
Sbjct: 536  IESLFSIHIANRILGIPLFDMVEEDKLLWIDSTNGNYNVKSGYKLMMKIAGKVHDAPQ-- 593

Query: 712  PGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFL 891
               W  +W +Q PPK K+ LWRV + CLPTR  L  + V    +C  C+ + E++WH+F 
Sbjct: 594  QAAWRDLWSIQAPPKAKHLLWRVSKGCLPTRLRLQERQVSCPLLCPVCNQENEDDWHVFF 653

Query: 892  SCEFAVACWRSSNMLH----LVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWK 1059
             CE +   W+++ +L      + H  N   L    C                ++ W +W 
Sbjct: 654  GCEISKQAWQAAGILQNLEARLQHNNNANQLIHTIC----STEDKETAGMFAMLAWVLWN 709

Query: 1060 QRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAV-CAYWHPPKFAELKC 1236
             RN+ +WN+          +A    + W + +     H           W  P     KC
Sbjct: 710  NRNNMVWNDTNEPGRSLGIKARVLWEEWNSVQQVQQGHSRHEQQQHTTRWQTPDPGWYKC 769

Query: 1237 NIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGL 1416
            N+DA F Q   K   G V+RD  G  ++  T W  G  ++MEGE   L++ L  +   G+
Sbjct: 770  NVDAGFHQAINKTSTGWVLRDDRGRFVMAETTWMEGNCSIMEGESIALIKALETLSQRGI 829

Query: 1417 SKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            SKV FE D+KSV DA+       +EF  +I   N I+   P +KV+++ R+A
Sbjct: 830  SKVIFETDSKSVVDAVHRLHSGSSEFSLLISHINKIMLCNPNFKVKFIKRQA 881


>gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1094

 Score =  390 bits (1003), Expect = e-121
 Identities = 186/527 (35%), Positives = 286/527 (54%), Gaps = 3/527 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MSV+LLP +   E++RM+NS+WWG      + I W+ WD++   K  GGLGF+
Sbjct: 565  QAIPSYVMSVYLLPETTINEIERMMNSFWWGGGANN-QGIRWLAWDRMAFPKALGGLGFK 623

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + H FNLA++AK GW I + P TL++RIYKA+YFP     N+ LG NPS+ WRSIW +R 
Sbjct: 624  DLHTFNLAMIAKQGWNIMTKPHTLVARIYKARYFPNSSLFNANLGHNPSYAWRSIWKARH 683

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RWIIG G +I +  DPWLR+     I S QV G   + V++L +P   +WD   
Sbjct: 684  ILMNGCRWIIGKGTNINVMGDPWLREKEGAWIQSPQVQGAHKINVNDLLLPNEKKWDKEK 743

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV 720
            IE  F    V  IL IP+F  VE D+LIW+ S  G Y+VKSGY M++N+      +    
Sbjct: 744  IESLFSSDVVSNILDIPLFDMVEEDKLIWNDSLHGQYSVKSGYNMMLNNTGRVEEMTQEN 803

Query: 721  WSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSCE 900
            W  +W++  PPK K+ LWR+C+ CLPTR  L  + V    +C  C+   E++WHI  +C 
Sbjct: 804  WQYLWKIHAPPKAKHLLWRICKGCLPTRTRLQERRVTCPLLCPLCEQSNEDDWHILFNCN 863

Query: 901  FAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKIW 1080
             ++   +++ +  ++   +  +    D    +             ++LW +W  RN K+W
Sbjct: 864  DSLQARQAAGLEQVIAARMQQYHTTQDVIKSICHDMDRDTAGLFAVLLWVLWNNRNDKVW 923

Query: 1081 NNRCATATDTIKQAISFMDTWRAARLKY---PAHESGTAAVCAYWHPPKFAELKCNIDAA 1251
            N           +A      W + + ++   P  E     V   W  P     KCN DA 
Sbjct: 924  NGSTEAGRSLGLKARQLWCEWYSVQTQWQQRPGAEQQQQQVLT-WQKPPTGWYKCNADAG 982

Query: 1252 FFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTF 1431
            F+ +  K   G  +RDH G  +   T+W  G+ +++EGE   LLE +  +K+ G++   F
Sbjct: 983  FYNELNKSSAGWCLRDHTGSFVKAGTIWNEGKCSIIEGEALALLEAMKAVKDRGITHAIF 1042

Query: 1432 EIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            E D+K+V DA+ +     +EF  +I     ++   P + V+++ R+A
Sbjct: 1043 ETDSKNVVDAIHNLRGGTSEFSSLICDIKNVMMFNPNFVVKFIKRQA 1089


>dbj|GAU24016.1| hypothetical protein TSUD_328180 [Trifolium subterraneum]
          Length = 659

 Score =  378 bits (970), Expect = e-120
 Identities = 183/525 (34%), Positives = 287/525 (54%), Gaps = 2/525 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MSV+LLP S  +E++RM+NS+WWG      + I W+ WDK+   K  GGLGFR
Sbjct: 99   QAIPSYVMSVYLLPESTIKEIERMMNSFWWGGGANN-KGIQWLSWDKMTSPKALGGLGFR 157

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + H FNL ++AK GW I + PDTL++++YKA+YFP   F +S++G NPS+ WR IW +R+
Sbjct: 158  DLHSFNLEMIAKQGWNIMTKPDTLVAKLYKARYFPNSSFFDSQIGHNPSYAWRGIWKARK 217

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW IG+G +IK+  +PWLRD     I S Q   +  +TV +L       W+   
Sbjct: 218  ILMNGCRWSIGNGANIKVMSEPWLRDKEEAWIPSPQAHSVYDITVKDLMNTHEKTWNKEK 277

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANL-VCPG 717
            IE  F      +I+  P+   +  D+LIW  +  G+Y+VKSGY +++N     ++ +  G
Sbjct: 278  IESLFPLHVAIRIINTPLCDMIVEDKLIWIDNVHGHYSVKSGYNLMLNVTGRVSVSIQQG 337

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
            VW R+WQ+  PPK K+ LWR+C+DCLPTR  L  K V     C  CD   EN+WH    C
Sbjct: 338  VWKRLWQIHAPPKTKHLLWRICKDCLPTRTRLQEKHVPCQLSCPVCDQGYENDWHALFDC 397

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              ++   R++ + H++   +  ++   D    +     N +  +  +++W IW  RN+ +
Sbjct: 398  YDSIQAARAAGLEHVIQPRIQQYNNAGDVIRHICATEDNQVAGQFAMLIWVIWNNRNNSL 457

Query: 1078 WNNRCATATDTIKQAISFMDTWRAA-RLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAF 1254
            WN+          +A    + W +  +L+     +        W  P      CN+DA F
Sbjct: 458  WNDSKEPGRSLGIKARLLWEEWNSVHQLQQQQQTTSQQQHIQSWQKPPVDWYTCNVDAGF 517

Query: 1255 FQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFE 1434
             ++  K   G  V DH G  ++  T W  G  +++EGE   LLE L  M++ G+S V FE
Sbjct: 518  NRNSNKTSFGWCVHDHLGEFVVAGTGWREGNHSIVEGESLALLEALKEMESRGISHVNFE 577

Query: 1435 IDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRR 1569
             D+ SV +A+      ++EF  +I     +L   P + V+++ R+
Sbjct: 578  TDSMSVVNAIRHLRGGYSEFSAIISNIKNVLLLHPNFAVKFIKRQ 622


>gb|PNX71669.1| ribonuclease H [Trifolium pratense]
          Length = 659

 Score =  376 bits (966), Expect = e-120
 Identities = 181/526 (34%), Positives = 289/526 (54%), Gaps = 2/526 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K  GGLGFR
Sbjct: 99   QAIPSYVMSVYLLPDSTIKDIERMMNSFWWGGGSNN-KGIRWLAWDRMIHPKTRGGLGFR 157

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + + FNLA++AK GW + + P TL++++YKA+YFP      +++G NPS+ WR IW SR+
Sbjct: 158  DIYAFNLAMIAKQGWNLMTKPHTLVAKLYKARYFPNSTLFEAKIGHNPSYAWRGIWKSRE 217

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW +G G +IK+  +PWLR   N  + S Q  G+  LTV++L +P    WD   
Sbjct: 218  ILMNGCRWSVGSGTNIKVMSEPWLRGQGNAWLPSPQTQGVHNLTVNDLMVPNMKMWDKAK 277

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANL-VCPG 717
            I+  F    V  IL+ P+   +E D+LIW     G+Y+VKSGYK+++N    A++     
Sbjct: 278  IDSIFPLHIVNCILETPLHDMLENDKLIWADDMHGHYSVKSGYKLMMNVTGKADMSFQQR 337

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  +W ++ PPK K+ LWR+ + CLPTR  L  K V    +C  C+   E++WH+   C
Sbjct: 338  DWGSLWAIRSPPKAKHLLWRIAKGCLPTRMRLQEKRVSCPLLCPLCNQHNEDDWHVLFGC 397

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              +    +S+ +  ++   +  F   +D    +    S        +++W +W  RN+ +
Sbjct: 398  ATSSQARQSACLEQVILPRLQRFSSASDVIFDICSNESQETAGSFAMLVWVLWNNRNNCV 457

Query: 1078 WNNRCATATDTIKQAISFMDTW-RAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAF 1254
            WN+   + +    +A      W   A+++  + +S        W  P     KCN+DAAF
Sbjct: 458  WNDMNESGSCLGIKARHLWAEWLSVAQVQQSSSQSDQNQQATRWQKPVQGWYKCNVDAAF 517

Query: 1255 FQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFE 1434
             ++Q +   G  +RD  G  +   T W  G  +++EGE   LLE L  ++  G + V  E
Sbjct: 518  HKEQNRTSFGWCIRDDEGQFVKAETAWMMGNCSIVEGESLALLEALKALEQSGKTHVIIE 577

Query: 1435 IDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
             D+K+V DA+       +EF  +IR  N IL   P +KV++V R+A
Sbjct: 578  TDSKNVVDAIRHLRGGSSEFSSIIRLINNILLCNPNFKVEFVKRQA 623


>gb|KYP35971.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 606

 Score =  368 bits (944), Expect = e-117
 Identities = 187/526 (35%), Positives = 277/526 (52%), Gaps = 2/526 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P Y MS FL+P+SL EE+QRM+NS+WWGS    GR I W+ W+KL V          
Sbjct: 70   QAIPAYYMSAFLIPISLEEEIQRMLNSFWWGSNSRSGRGIQWLNWEKLTVR--------- 120

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
                          W++ +NPD + +RI+KA+YFP+G FL + LG NPS+ WRSI  S+ 
Sbjct: 121  --------------WRLLTNPDAIFTRIFKARYFPQGYFLGARLGHNPSYVWRSIHESQA 166

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            +I+ G RW +G G SIK+W DPWLR  SN  I+S  ++G++ L V +L       W+  I
Sbjct: 167  IIQEGVRWCVGSGSSIKVWTDPWLRLSSNPFISSPTISGLDHLKVKDLIDHNMGRWNTTI 226

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSII-DANLVCPG 717
            +      RD + I  IP+F   + D + W  ++ G YT+KS Y  L+  +  + +L  PG
Sbjct: 227  LSALCNQRDNQVIQAIPLFHLQDSDMISWSHTRNGMYTIKSAYYQLMEHLTPNVDLRIPG 286

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             WS +W ++ P   K FLWRV R CLPTR NL R+ V  T +C  C + +EN WHIF  C
Sbjct: 287  NWSMLWSMKAPNTKKIFLWRVLRGCLPTRLNLQRRHVPCTMLCPTCSAGIENEWHIFFEC 346

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
              A   W +S     ++  +   D       ++L+  S S    +  ++W IW++RN  +
Sbjct: 347  VEAKDIWAASGFWPKISQIIADSDGIQQAIFQLLQCLSPSEALDLLCLMWGIWRKRNDIL 406

Query: 1078 WNNRCATATDTIKQAISFMDTWRAAR-LKYPAHESGTAAVCAYWHPPKFAELKCNIDAAF 1254
            WNN+   +   I  A   +  W +AR  +     +    +C +  PP++  +KCN+D   
Sbjct: 407  WNNKVTPSHTVIFLARQRISEWMSARETQQIPKVARNDPICWFKPPPEY--MKCNVDVTI 464

Query: 1255 FQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFE 1434
            F D    G    +RD  G      T W+ G +   E E    LE +TW+ N    KV  E
Sbjct: 465  FTDSNCCGFAFYIRDDLGRFKAATTGWYNGSLPPNEAEAMACLEAITWLANSHYEKVLIE 524

Query: 1435 IDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            +D K V D L D     +E+GR+     ++L+     +V++V R+A
Sbjct: 525  LDCKKVVDDLYDSTSLFSEYGRLSYKGRSLLALHKNLEVRFVRRQA 570


>gb|PNY09839.1| ribonuclease H [Trifolium pratense]
          Length = 1316

 Score =  382 bits (981), Expect = e-116
 Identities = 187/527 (35%), Positives = 293/527 (55%), Gaps = 3/527 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K +GG+GFR
Sbjct: 755  QAIPSYVMSVYLLPDSTIKDIERMMNSFWWGGGAHN-KGIRWLAWDRMTYPKTQGGMGFR 813

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            + H FNLA++AK GWKI +   +L++++YKA+YFP+  F  ++LG NPS+ WR IW +R+
Sbjct: 814  DLHSFNLAMIAKQGWKIMTQAHSLLAKLYKARYFPKTSFFEAKLGHNPSYAWRGIWEARR 873

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW +G+G +IK+ ++PWLRD +   + S     +    V +L IP    WD   
Sbjct: 874  ILMNGCRWSVGNGATIKVMQEPWLRDAAGAWLPSPHDQSVHNFNVKDLMIPNRKMWDKEK 933

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDAN-LVCPG 717
            IE  F      +IL IP+F  +E D+L W  +  G Y+VKSGYK+++N    AN  V   
Sbjct: 934  IESIFPLHITNRILAIPLFDMLEEDKLTWIDNSNGLYSVKSGYKLMMNLTGKANGTVQQH 993

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  +W +  P K K+ LWR+ ++CLP+R  L  K V    +C  C+   E++WH+   C
Sbjct: 994  DWQSLWSICAPSKAKHLLWRISKECLPSRVRLQEKHVPCPVLCPVCNHDREDDWHVLFEC 1053

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            E +    +++ +   V   +       D  +K+ +   +S   +  +++W IW  RN+ +
Sbjct: 1054 ETSFQACQTAGLAATVESRLQHSSNARDVILKICKNEDSSTAGRFAMLVWVIWNNRNNIV 1113

Query: 1078 WNNRCATATDTIKQAISFMDTWRAA-RLKYP-AHESGTAAVCAYWHPPKFAELKCNIDAA 1251
            WN+          +A    + W +A +LK+   H +        W  P    LKCNIDA 
Sbjct: 1114 WNDTSEPGGRLGLKAKHLWEEWLSAQQLKHSRPHATQQQQQIPKWQKPSNGWLKCNIDAG 1173

Query: 1252 FFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTF 1431
            F  D  K   G  +RD  G  ++  T W  G  +++EGE   LL+ L  ++  GLS V F
Sbjct: 1174 FHVDMHKTSAGWCLRDDLGRFVMAETTWMEGNCSIVEGESIALLKALQALEQRGLSHVIF 1233

Query: 1432 EIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            E D+KSV DA+       +EF  +I   N+IL   P +KV+++ R+A
Sbjct: 1234 ETDSKSVVDAISHLSGGSSEFSFIISHINSILLCNPNFKVKFIKRQA 1280


>dbj|GAU35274.1| hypothetical protein TSUD_274760 [Trifolium subterraneum]
          Length = 885

 Score =  372 bits (956), Expect = e-116
 Identities = 185/507 (36%), Positives = 291/507 (57%), Gaps = 4/507 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            Q +P+Y MS+FL+P S+ +++++M+NS+WWG  +   + I W+ W++L V K +GG+GF+
Sbjct: 359  QTIPSYIMSIFLIPSSVIDDIEKMLNSFWWGHNRAQSKGIRWMSWERLSVHKQDGGMGFK 418

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +   FN A+L K  W + + PDTL+++++KAKYFP  DFL S +G NPS+ WRSIWSS+ 
Sbjct: 419  SLGAFNHAMLGKQAWNLITKPDTLVAKLFKAKYFPHSDFLESSIGHNPSYVWRSIWSSKF 478

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++K G +W IG G +I +W+  WL D ++        + +  LTV +L      EW   +
Sbjct: 479  VVKGGHKWSIGTGHNISLWDQNWLFDGTSIKKPDNIDSQLNNLTVADLLHHNAKEWVSGL 538

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSI--IDANLVCP 714
            I     D   ++IL  P+  +V+ D++ W   K G YTVKS Y+  +++I   D + V  
Sbjct: 539  IRGLVNDDIADKILHTPLLESVQNDKITWQHEKNGLYTVKSVYRFCISTIPGRDQHRV-E 597

Query: 715  GVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLS 894
            G    IWQ Q+PPK+K F+WR+CR+CLPTR  L  +GV     C  CD+  E++ H+F S
Sbjct: 598  GNSHLIWQTQMPPKIKKFMWRICRNCLPTRARLHDRGVTCPINCVLCDAGDEDSNHLFFS 657

Query: 895  CEFAVACWRSSNM-LHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNS 1071
            C+ ++ CW+   +   ++ H   T  +  +    ML+ +  S     C ++W+IWKQRN 
Sbjct: 658  CQNSINCWQQMGLWSSIMQHRNLTISVKENVFNIMLQLNEESRVVFAC-VMWSIWKQRND 716

Query: 1072 KIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCAY-WHPPKFAELKCNIDA 1248
             IW N     T   ++A S +  WR AR     + +   +   + W  P     KCN+DA
Sbjct: 717  VIWRNERVHRTVVCERANSLLTGWRNAREVRDMYNNQQHSPQRFEWTKPDAGTWKCNVDA 776

Query: 1249 AFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVT 1428
            +F + + K G G+ +RD+ G  +L +T W+   + V  GE  GLL  L W+K+L L+ V 
Sbjct: 777  SFSRSRNKVGIGVCIRDNQGQFVLAKTEWYSPILDVDTGEALGLLSALKWVKDLHLNSVV 836

Query: 1429 FEIDAKSVTDALGDKEERHTEFGRMIR 1509
            FE+D+K V D   +       FG +I+
Sbjct: 837  FELDSKRVVDKFNNNMIDEYVFGDIIK 863


>gb|PNX94516.1| ribonuclease H [Trifolium pratense]
          Length = 1358

 Score =  378 bits (970), Expect = e-114
 Identities = 189/530 (35%), Positives = 292/530 (55%), Gaps = 6/530 (1%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MS++LLP +L +EL+RMIN++WWG      R I W+ WD++  SK+ GGLGFR
Sbjct: 798  QAIPSYVMSIYLLPDTLIKELERMINAFWWGGSNNS-RGIKWLSWDRMVSSKDRGGLGFR 856

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +F  FNLA++AK GW   + P TL+SR +KA+YFP+    ++ LG+NPS+ WRSIW SRQ
Sbjct: 857  DFQVFNLAMVAKQGWNFITKPHTLVSRTFKARYFPKCSLFDAVLGNNPSYVWRSIWKSRQ 916

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            ++  G RW+IGDG  IK+ +DPWLR  +N  +++ Q   +  L V +L +P   +WD   
Sbjct: 917  VLLHGCRWVIGDGSKIKVMQDPWLRSSNNSWVSAPQNYTVHNLKVQQLLLPNQKQWDERK 976

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPG- 717
            I   F +  V+ IL IP+ +  E D +IW     G Y+V+SGYK ++    +     P  
Sbjct: 977  IMSLFPEHTVKDILAIPLLATTEEDMIIWKEESNGTYSVRSGYKKMMREKGEWCSNRPSE 1036

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  IW+++ P K K+ LWR+C+DCLPTR  L    V+    C FC    E+  H+F  C
Sbjct: 1037 PWGMIWKIKAPQKAKHLLWRICKDCLPTRVRLRNHFVNCPLDCPFCSHNDEDERHLFFEC 1096

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            E +   W    +  ++N  +  FD   D    +     N +  ++ ++LW +WK RN+ +
Sbjct: 1097 EGSKEAWIVMGLDSVINQRLQHFDNIRDIIFDVCAHEDNIVAGRMAILLWTLWKNRNNWV 1156

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARL-----KYPAHESGTAAVCAYWHPPKFAELKCNI 1242
            W    A+A  +  +A    + W +        +   H+         W PP    LKCN+
Sbjct: 1157 WKELRASARQSGFEAQHLWEEWHSVTTLGTLEQQQEHDHSLIT----WQPPPQGMLKCNV 1212

Query: 1243 DAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSK 1422
            DA+F  +    G G  +R  NG  I+  +     ++ +MEGE   + E +      G ++
Sbjct: 1213 DASFHSNIDACGWGWCLRGCNGQYIVAGSNVLYKKLNIMEGEAMAVKEAICETIQRGFTQ 1272

Query: 1423 VTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 1572
            V FE D+K V DA+  +    +EF  +I    ++L S P ++V++V R+A
Sbjct: 1273 VIFESDSKIVVDAILSRNVGVSEFWCIISCIRSMLLSYPNFEVKFVKRQA 1322


>dbj|GAU44081.1| hypothetical protein TSUD_399630 [Trifolium subterraneum]
          Length = 539

 Score =  355 bits (912), Expect = e-113
 Identities = 176/508 (34%), Positives = 284/508 (55%), Gaps = 7/508 (1%)
 Frame = +1

Query: 70   MINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFRNFHYFNLALLAKLGWKIFSNPDT 249
            M+NS+WWG      + I+W+ WDKL + KN+GG+GF+N   FNLALL K GW+I SNPD 
Sbjct: 1    MMNSFWWGHSGAHNKGIHWMSWDKLSMHKNDGGMGFKNLTAFNLALLGKQGWRIMSNPDI 60

Query: 250  LISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQLIKLGTRWIIGDGKSIKIWEDPW 429
            LIS++YKAKYF   +F +S++G NPSF WRSI +S+ L++ G+RW IG G +I +  + W
Sbjct: 61   LISQLYKAKYFLDCEFFDSKVGHNPSFVWRSICNSKFLLRAGSRWRIGSGNNIPLLNENW 120

Query: 430  LRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNIIEEYFCDRDVEQILKIPVFSNVE 609
            L D S+  +   +V+    L V ++ +P T  W++ ++        + ++L  P+F +V 
Sbjct: 121  LFDASSLQLQLTEVSLAGHLVVADVILPDTKCWNLPLLTTQLDSSGINKVLNTPLFDSVV 180

Query: 610  CDRLIWHFSKTGNYTVKSGYKMLVNSIID-ANLVCPGVWSRIWQLQIPPKVKYFLWRVCR 786
             D+ I    +   Y+V+S Y++ V+ ++D ++L   G W+ IW+L  PP+V+  LWR+CR
Sbjct: 181  EDKRICRMEENDAYSVRSAYRLCVHELLDTSHLRMDGTWNLIWKLNAPPRVRNLLWRICR 240

Query: 787  DCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSCE-----FAVACWRSSNMLHLVNH 951
             C+PTR NL  +G++ T VC+ C+ Q E++ HIF  C      +++ C+ +  +  L N 
Sbjct: 241  RCVPTRVNLRSRGMNCTTVCSLCNDQDEDSRHIFFDCPSSRNVWSMCCFGNKIIAALHND 300

Query: 952  WVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKIWNNRCATATDTIKQAISF 1131
            +  ++ +F      +L+  SN   + +  ++W+IWKQRNS+IWNN        + +A++ 
Sbjct: 301  YAASYLIF-----DLLQQLSNEDASLMACVIWSIWKQRNSRIWNNVIDAQNFVLSRAVAL 355

Query: 1132 MDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAFFQDQRKFGCGMVVRDHNGC 1311
            ++ W   +   P            W+ P    +KCNIDA+F     + G  + +RD  G 
Sbjct: 356  INDWCDVQQARPDAMGQHTTTEIKWNKPANGRVKCNIDASFSSHNNRVGISVCIRDEKGA 415

Query: 1312 IILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFEIDAKSVTDALGDKEERHTE 1491
             +  +   F     V  GE  G L  L+W+  L L  V FE+D+K V D         TE
Sbjct: 416  YVSAKLDQFSPICDVRVGEALGFLSALSWIHELNLGPVDFELDSKLVIDGFHSNNHDITE 475

Query: 1492 FGRMIRACNAILSS-EPTYKVQYVNRRA 1572
            F  +I  C  + +S      V+++ R+A
Sbjct: 476  FREIISHCRRLYNSFYANSSVEFIRRQA 503


>gb|PNY14982.1| ribonuclease H [Trifolium pratense]
          Length = 1316

 Score =  372 bits (955), Expect = e-112
 Identities = 181/528 (34%), Positives = 285/528 (53%), Gaps = 4/528 (0%)
 Frame = +1

Query: 1    QALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFR 180
            QA+P+Y MS++++P +   E++RM+NS+WWG      + I W+ W++L  +K EGGLGFR
Sbjct: 755  QAIPSYVMSIYIIPDTTMNEIERMLNSFWWGGGSNN-KGIRWLSWERLACAKGEGGLGFR 813

Query: 181  NFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQ 360
            +F  FN+A++AK GWKI + P+TL+++I+KA+YFP    + + LGSNPS+ W S+W S  
Sbjct: 814  DFKAFNMAMVAKQGWKIMARPETLVAKIFKARYFPHSSLIEANLGSNPSYVWSSLWKSCN 873

Query: 361  LIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNI 540
            +++LG RW IGDG +IK+ +D WLR      +++ Q  G+  L V +L + G  +W+M  
Sbjct: 874  VLRLGCRWNIGDGSNIKVMDDSWLRGKERGRVSAPQPEGVYNLCVKDLMLDGVKQWNMVR 933

Query: 541  IEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSI-IDANLVCPG 717
            I   F       IL IP+   V+ D+L+W   + G YTVKSGY++L+  I  +      G
Sbjct: 934  ISNLFTHDAATDILSIPLLREVKEDKLVWQEEQNGEYTVKSGYRLLMQKIKEEKQRGMTG 993

Query: 718  VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSC 897
             W  +WQ++ PPKVK+ LWR+CRDCLPTR  L    V    +C  C    E++ H+   C
Sbjct: 994  SWKALWQIRAPPKVKHLLWRICRDCLPTRTRLQHHHVQCPAICELCRGANEDSRHVLFDC 1053

Query: 898  EFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKI 1077
            E +  CW  + +  ++   +N ++   +    +    S  +  ++ + +W IW  RN  I
Sbjct: 1054 EESKNCWNVAGLYDVITGRLNQYNDAKEVIFDICSKESKDVAGRVAMTIWLIWNNRNQWI 1113

Query: 1078 WNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAV--CAYWHPPKFAELKCNIDAA 1251
            WN+    A     QA    + W   +  + +   G   V     W PP+   LKCN+DA 
Sbjct: 1114 WNHEKRNALQLGVQASHMWNEWYEIQ-NFSSSRGGEEQVQQQLQWVPPRQGWLKCNVDAG 1172

Query: 1252 FFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTF 1431
            F  D R    G  +R+  G  I   + W  G  +++E E   LLE +     +    +TF
Sbjct: 1173 FHNDGRITSGGWCLRNERGQFIRAGSYWKNGAHSILEAEALALLEAMKAACTMNRQHITF 1232

Query: 1432 EIDAKSVTDALGDKEERHTE-FGRMIRACNAILSSEPTYKVQYVNRRA 1572
            E D++ V  A+ D        F  +I     +L     ++V++V R+A
Sbjct: 1233 ESDSQLVVGAIQDANYNGASIFSIIISNIKNLLLLNSNFEVKFVKRQA 1280